Query psy7399
Match_columns 107
No_of_seqs 220 out of 1297
Neff 9.1
Searched_HMMs 46136
Date Fri Aug 16 17:12:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7399.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7399hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3119 AslA Arylsulfatase A a 100.0 4.1E-28 8.8E-33 177.8 9.4 96 1-105 265-362 (475)
2 TIGR03417 chol_sulfatase choli 99.9 1.1E-26 2.4E-31 171.1 9.3 93 1-105 258-350 (500)
3 PRK13759 arylsulfatase; Provis 99.9 1.1E-25 2.4E-30 165.3 9.8 94 1-106 273-370 (485)
4 PF00884 Sulfatase: Sulfatase; 99.9 7.8E-24 1.7E-28 145.6 8.8 91 2-101 217-308 (308)
5 KOG3867|consensus 99.9 2E-23 4.3E-28 152.9 8.5 103 1-106 274-377 (528)
6 KOG3731|consensus 99.9 2.9E-22 6.4E-27 143.1 7.2 95 2-107 279-373 (541)
7 PRK11598 putative metal depend 99.8 8.1E-20 1.8E-24 135.7 10.0 93 1-105 423-530 (545)
8 COG3083 Predicted hydrolase of 99.8 2.1E-19 4.6E-24 130.2 9.3 95 2-106 429-524 (600)
9 PRK12363 phosphoglycerol trans 99.8 2.3E-19 5E-24 135.6 9.8 87 1-104 360-447 (703)
10 PRK11560 phosphoethanolamine t 99.8 3.7E-19 8E-24 132.4 9.1 91 1-105 437-542 (558)
11 PRK03776 phosphoglycerol trans 99.8 1.2E-18 2.6E-23 132.2 9.6 87 1-103 363-449 (762)
12 PRK09598 lipid A phosphoethano 99.8 1.1E-18 2.3E-23 129.3 8.1 94 1-104 409-506 (522)
13 PRK10649 hypothetical protein; 99.8 1.8E-18 3.9E-23 129.4 8.0 95 1-105 432-534 (577)
14 TIGR03397 acid_phos_Burk acid 99.7 1.9E-17 4.1E-22 120.8 9.9 89 2-103 365-454 (483)
15 TIGR01307 pgm_bpd_ind 2,3-bisp 99.7 6.9E-17 1.5E-21 118.5 9.7 88 2-107 408-495 (501)
16 PRK05362 phosphopentomutase; P 99.7 6.6E-17 1.4E-21 116.0 8.8 81 1-105 304-384 (394)
17 PRK05434 phosphoglyceromutase; 99.7 9.1E-17 2E-21 118.4 9.3 88 1-107 413-500 (507)
18 TIGR01696 deoB phosphopentomut 99.7 9.2E-17 2E-21 114.6 8.9 82 1-105 296-377 (381)
19 PRK12383 putative mutase; Prov 99.6 1.7E-15 3.8E-20 108.9 8.1 80 1-104 312-391 (406)
20 COG1368 MdoB Phosphoglycerol t 99.6 5.8E-15 1.3E-19 112.1 7.6 95 2-103 460-554 (650)
21 PLN02538 2,3-bisphosphoglycera 99.5 2.7E-13 5.8E-18 100.5 10.1 98 2-107 447-551 (558)
22 PF01676 Metalloenzyme: Metall 99.5 1.1E-13 2.4E-18 94.6 6.6 83 2-107 167-249 (252)
23 KOG2125|consensus 99.4 3.7E-12 7.9E-17 95.6 9.0 90 2-107 220-312 (760)
24 COG0696 GpmI Phosphoglyceromut 99.2 4.5E-11 9.8E-16 87.0 8.5 86 2-107 415-501 (509)
25 KOG4513|consensus 99.2 9.7E-11 2.1E-15 83.3 8.0 90 2-107 431-524 (531)
26 PF02995 DUF229: Protein of un 99.2 2.2E-11 4.8E-16 90.3 4.5 89 2-105 311-410 (497)
27 COG1015 DeoB Phosphopentomutas 99.1 2.9E-10 6.4E-15 80.5 7.6 80 2-105 308-387 (397)
28 KOG2126|consensus 98.9 5.8E-09 1.3E-13 80.3 7.4 83 2-105 235-321 (895)
29 COG2194 Predicted membrane-ass 98.9 3.2E-09 7E-14 79.5 4.7 90 2-103 425-529 (555)
30 cd00016 alkPPc Alkaline phosph 98.8 6E-08 1.3E-12 70.1 9.9 94 2-101 276-384 (384)
31 KOG2124|consensus 98.8 7.3E-09 1.6E-13 79.7 4.8 90 2-107 226-329 (883)
32 PF04185 Phosphoesterase: Phos 98.6 4.1E-07 9E-12 65.6 9.0 100 2-102 276-376 (376)
33 PF01663 Phosphodiest: Type I 98.4 4.7E-07 1E-11 63.8 4.9 37 2-38 212-248 (365)
34 PRK04024 cofactor-independent 98.3 4E-06 8.6E-11 61.3 7.3 76 2-101 320-406 (412)
35 PRK10518 alkaline phosphatase; 98.2 1.7E-05 3.7E-10 58.8 9.4 95 2-102 369-476 (476)
36 PF07394 DUF1501: Protein of u 98.2 4.9E-06 1.1E-10 60.1 6.5 87 2-103 270-367 (392)
37 KOG2645|consensus 98.1 3.4E-06 7.3E-11 61.5 4.1 38 1-38 202-239 (418)
38 COG1524 Uncharacterized protei 98.1 1.3E-05 2.7E-10 59.0 6.7 36 2-37 246-281 (450)
39 TIGR00306 apgM 2,3-bisphosphog 97.8 0.0001 2.2E-09 53.8 6.9 53 2-78 314-366 (396)
40 TIGR03396 PC_PLC phospholipase 97.8 0.00031 6.7E-09 54.4 9.5 103 3-105 307-430 (690)
41 TIGR02535 hyp_Hser_kinase prop 97.6 0.00027 5.8E-09 51.6 7.0 55 2-78 311-366 (396)
42 PRK04200 cofactor-independent 97.6 0.00028 6.1E-09 51.4 6.6 54 2-78 310-364 (395)
43 COG3635 Predicted phosphoglyce 97.5 0.00064 1.4E-08 49.1 7.2 74 2-100 323-407 (408)
44 PRK04135 cofactor-independent 97.4 0.00057 1.2E-08 49.8 6.5 74 1-101 305-389 (395)
45 COG1785 PhoA Alkaline phosphat 97.2 0.005 1.1E-07 45.9 8.9 38 63-103 444-481 (482)
46 TIGR02335 hydr_PhnA phosphonoa 96.8 0.0013 2.8E-08 48.2 3.5 29 2-38 215-243 (408)
47 smart00098 alkPPc Alkaline pho 96.6 0.0037 7.9E-08 46.0 4.1 94 2-101 279-418 (419)
48 PF00245 Alk_phosphatase: Alka 96.5 0.0043 9.3E-08 45.7 4.3 94 2-101 282-421 (421)
49 PF11658 DUF3260: Protein of u 95.1 0.31 6.7E-06 36.8 8.9 84 7-101 383-471 (518)
50 PF08665 PglZ: PglZ domain; I 95.0 0.05 1.1E-06 35.4 4.1 26 8-37 151-176 (181)
51 TIGR03368 cellulose_yhjU cellu 94.8 0.37 8E-06 36.3 8.6 83 7-100 380-467 (518)
52 COG3379 Uncharacterized conser 94.1 0.12 2.7E-06 38.0 4.8 36 70-106 424-459 (471)
53 COG4102 Uncharacterized protei 91.1 1.5 3.3E-05 31.9 6.8 34 4-37 294-328 (418)
54 TIGR02687 conserved hypothetic 90.0 0.37 8.1E-06 38.7 3.3 15 24-38 617-631 (844)
55 COG3379 Uncharacterized conser 88.7 0.55 1.2E-05 34.8 3.2 31 3-37 236-266 (471)
56 PF05991 NYN_YacP: YacP-like N 83.3 1.3 2.7E-05 28.6 2.5 31 4-37 78-108 (166)
57 KOG4126|consensus 81.6 2.4 5.2E-05 32.3 3.7 20 18-37 382-401 (529)
58 PRK13366 protocatechuate 4,5-d 78.5 3.9 8.5E-05 28.8 3.8 33 3-37 31-63 (284)
59 cd07364 PCA_45_Dioxygenase_B S 78.2 3.6 7.7E-05 28.8 3.6 33 4-38 32-64 (277)
60 cd07950 Gallate_Doxase_N The N 76.5 3.8 8.2E-05 28.7 3.3 32 4-37 32-63 (277)
61 PRK13365 protocatechuate 4,5-d 75.4 4.6 9.9E-05 28.3 3.5 32 4-37 32-63 (279)
62 PRK13364 protocatechuate 4,5-d 74.8 5.2 0.00011 28.1 3.7 32 4-37 32-63 (278)
63 PF14871 GHL6: Hypothetical gl 73.6 5.6 0.00012 24.7 3.2 26 10-37 3-28 (132)
64 PF08747 DUF1788: Domain of un 72.9 4.4 9.6E-05 25.1 2.6 54 10-78 47-104 (126)
65 COG0056 AtpA F0F1-type ATP syn 72.2 5.4 0.00012 30.2 3.3 25 7-31 203-227 (504)
66 cd07369 PydA_Rs_like PydA is a 71.6 9.2 0.0002 27.6 4.3 32 4-37 30-61 (329)
67 cd07949 PCA_45_Doxase_B_like_1 71.2 6.4 0.00014 27.6 3.4 30 6-37 34-63 (276)
68 PHA02754 hypothetical protein; 69.1 15 0.00032 19.7 3.7 17 6-22 17-33 (67)
69 COG2897 SseA Rhodanese-related 67.6 9 0.0002 27.1 3.5 28 10-37 76-103 (285)
70 cd07368 PhnC_Bs_like PhnC is a 66.3 11 0.00023 26.4 3.7 31 6-38 32-62 (277)
71 cd07366 3MGA_Dioxygenase Subun 64.9 12 0.00027 26.9 3.9 32 4-37 70-101 (328)
72 PF12646 DUF3783: Domain of un 64.6 19 0.00042 18.9 3.9 29 5-34 10-38 (58)
73 cd07367 CarBb CarBb is the B s 62.7 16 0.00035 25.4 4.0 30 6-37 28-57 (268)
74 PF14556 AF2331-like: AF2331-l 62.2 9.3 0.0002 21.9 2.3 23 11-34 10-32 (93)
75 PF05762 VWA_CoxE: VWA domain 62.1 14 0.00029 24.9 3.5 26 7-33 134-159 (222)
76 TIGR02049 gshA_ferroox glutama 60.3 27 0.00059 25.9 4.9 35 3-37 236-270 (403)
77 PF00702 Hydrolase: haloacid d 58.5 12 0.00026 24.1 2.7 25 8-35 131-155 (215)
78 COG4077 Uncharacterized protei 57.4 13 0.00029 23.3 2.6 24 2-25 79-102 (156)
79 cd01135 V_A-ATPase_B V/A-type 57.4 17 0.00036 25.6 3.4 27 7-33 114-141 (276)
80 PRK13373 putative dioxygenase; 56.4 23 0.0005 25.8 4.0 33 4-38 30-62 (344)
81 PRK05621 F0F1 ATP synthase sub 55.9 17 0.00037 25.4 3.3 12 26-37 77-88 (284)
82 PF02739 5_3_exonuc_N: 5'-3' e 55.7 28 0.00061 22.5 4.0 30 4-36 109-138 (169)
83 PF10673 DUF2487: Protein of u 54.6 37 0.00081 21.5 4.3 28 7-36 71-98 (142)
84 smart00481 POLIIIAc DNA polyme 53.1 27 0.00058 18.4 3.2 26 8-37 16-41 (67)
85 COG3885 Uncharacterized conser 51.9 45 0.00097 23.1 4.6 26 7-37 151-176 (261)
86 PF00231 ATP-synt: ATP synthas 51.8 10 0.00023 26.5 1.7 18 20-37 72-89 (290)
87 PRK00105 cobT nicotinate-nucle 51.6 13 0.00028 26.9 2.1 18 21-38 44-61 (335)
88 cd01132 F1_ATPase_alpha F1 ATP 51.1 26 0.00056 24.7 3.5 25 7-31 110-134 (274)
89 TIGR03160 cobT_DBIPRT nicotina 51.1 13 0.00028 26.9 2.1 19 21-39 43-61 (333)
90 cd01133 F1-ATPase_beta F1 ATP 51.0 26 0.00057 24.6 3.5 25 7-31 111-135 (274)
91 PF12281 DUF3620: Protein of u 50.8 14 0.0003 25.0 2.1 26 6-31 1-26 (217)
92 TIGR01146 ATPsyn_F1gamma ATP s 50.5 24 0.00051 24.8 3.3 12 26-37 78-89 (287)
93 PF02863 Arg_repressor_C: Argi 50.4 21 0.00046 19.5 2.5 27 8-34 27-58 (70)
94 PF08886 GshA: Glutamate-cyste 49.9 27 0.00058 25.9 3.5 35 3-37 239-273 (404)
95 PF01568 Molydop_binding: Moly 49.3 17 0.00038 21.0 2.2 24 14-37 37-60 (110)
96 KOG2645|consensus 48.9 16 0.00034 27.3 2.3 40 63-103 345-384 (418)
97 TIGR00962 atpA proton transloc 48.2 28 0.00061 26.7 3.5 25 7-31 202-226 (501)
98 PF02277 DBI_PRT: Phosphoribos 47.7 7.7 0.00017 27.9 0.5 17 21-37 51-67 (327)
99 COG1355 Predicted dioxygenase 47.3 47 0.001 23.5 4.2 32 3-37 164-196 (279)
100 PF12017 Tnp_P_element: Transp 46.2 45 0.00099 22.9 4.0 27 8-37 197-223 (236)
101 CHL00059 atpA ATP synthase CF1 45.6 26 0.00056 26.8 3.0 25 7-31 182-206 (485)
102 PF00006 ATP-synt_ab: ATP synt 45.5 35 0.00076 23.0 3.4 27 7-33 54-80 (215)
103 PRK13343 F0F1 ATP synthase sub 44.5 33 0.00072 26.3 3.4 25 7-31 203-227 (502)
104 PRK14111 F0F1 ATP synthase sub 44.3 18 0.00039 25.5 1.9 12 26-37 81-92 (290)
105 PRK13424 F0F1 ATP synthase sub 44.2 32 0.0007 24.2 3.2 12 26-37 79-90 (291)
106 cd07361 MEMO_like Memo (mediat 44.2 38 0.00081 23.4 3.5 28 7-37 157-184 (266)
107 PF00325 Crp: Bacterial regula 43.9 36 0.00078 15.8 2.3 15 7-21 17-31 (32)
108 PRK07165 F0F1 ATP synthase sub 43.8 33 0.00072 26.4 3.3 26 7-32 184-209 (507)
109 PTZ00185 ATPase alpha subunit; 43.6 39 0.00084 26.4 3.6 26 7-32 238-263 (574)
110 TIGR03324 alt_F1F0_F1_al alter 43.5 36 0.00079 26.1 3.5 26 7-32 203-228 (497)
111 PF05763 DUF835: Protein of un 43.2 42 0.00091 21.0 3.3 30 7-36 94-123 (136)
112 TIGR03323 alt_F1F0_F1_gam alte 42.9 44 0.00095 23.5 3.7 12 26-37 74-85 (285)
113 PRK13370 mhpB 3-(2,3-dihydroxy 42.8 66 0.0014 23.1 4.6 31 4-36 26-56 (313)
114 COG1137 YhbG ABC-type (unclass 42.6 36 0.00078 23.4 3.0 24 8-36 177-200 (243)
115 PF05746 DALR_1: DALR anticodo 42.2 19 0.00041 21.2 1.6 21 87-107 99-119 (119)
116 PRK09281 F0F1 ATP synthase sub 41.2 43 0.00092 25.7 3.6 25 7-31 203-227 (502)
117 PRK13363 protocatechuate 4,5-d 41.2 57 0.0012 23.7 4.1 29 7-37 75-103 (335)
118 PRK04196 V-type ATP synthase s 41.1 42 0.00091 25.4 3.5 28 7-34 188-216 (460)
119 PRK13423 F0F1 ATP synthase sub 40.8 33 0.00071 24.1 2.8 12 26-37 78-89 (288)
120 PF05827 ATP-synt_S1: Vacuolar 40.8 30 0.00065 24.0 2.6 29 2-33 149-177 (282)
121 KOG2791|consensus 40.6 52 0.0011 24.3 3.7 28 7-34 130-157 (455)
122 PF11181 YflT: Heat induced st 40.1 76 0.0016 18.5 3.9 28 6-33 9-36 (103)
123 COG1438 ArgR Arginine represso 39.5 32 0.00068 22.1 2.3 29 7-35 105-138 (150)
124 cd00008 53EXOc 5'-3' exonuclea 38.5 61 0.0013 22.1 3.8 31 4-37 108-138 (240)
125 PHA00439 exonuclease 38.0 64 0.0014 22.9 3.8 31 4-36 120-150 (286)
126 PF04220 YihI: Der GTPase acti 37.9 54 0.0012 21.5 3.2 21 3-23 129-149 (169)
127 PRK10517 magnesium-transportin 37.7 46 0.001 27.4 3.5 26 8-36 554-579 (902)
128 PF00656 Peptidase_C14: Caspas 37.3 37 0.00081 22.4 2.6 29 9-37 51-79 (248)
129 PRK09482 flap endonuclease-lik 37.1 67 0.0015 22.4 3.8 30 4-36 107-136 (256)
130 PHA02567 rnh RnaseH; Provision 36.9 61 0.0013 23.3 3.6 30 4-36 130-159 (304)
131 PF02887 PK_C: Pyruvate kinase 36.8 92 0.002 18.4 5.5 31 4-34 72-104 (117)
132 COG3511 PlcC Phospholipase C [ 36.8 2E+02 0.0044 22.4 7.1 88 17-104 325-426 (527)
133 cd07359 PCA_45_Doxase_B_like S 36.4 84 0.0018 21.6 4.2 29 7-37 31-59 (271)
134 PLN02723 3-mercaptopyruvate su 36.1 59 0.0013 23.1 3.5 27 10-36 89-115 (320)
135 cd03063 TRX_Fd_FDH_beta TRX-li 35.8 92 0.002 18.1 4.2 30 6-37 17-46 (92)
136 PRK15122 magnesium-transportin 35.0 53 0.0011 27.0 3.4 26 8-36 554-579 (903)
137 smart00187 INB Integrin beta s 34.7 66 0.0014 24.2 3.6 32 9-40 210-246 (423)
138 smart00475 53EXOc 5'-3' exonuc 34.7 71 0.0015 22.2 3.6 31 4-37 107-137 (259)
139 cd01520 RHOD_YbbB Member of th 34.3 1.1E+02 0.0023 18.4 4.3 27 7-33 69-95 (128)
140 cd07408 MPP_SA0022_N Staphyloc 34.2 60 0.0013 22.1 3.2 23 9-34 26-48 (257)
141 PF00245 Alk_phosphatase: Alka 34.1 50 0.0011 24.7 2.9 8 12-19 89-96 (421)
142 COG3688 Predicted RNA-binding 33.4 83 0.0018 20.6 3.5 33 3-37 81-113 (173)
143 cd02787 MopB_CT_ydeP The MopB_ 33.2 64 0.0014 18.8 2.9 24 14-37 38-61 (112)
144 COG5012 Predicted cobalamin bi 33.2 67 0.0015 22.1 3.2 24 8-31 171-194 (227)
145 PRK02118 V-type ATP synthase s 33.2 62 0.0013 24.5 3.3 25 7-31 179-203 (436)
146 KOG1348|consensus 32.9 38 0.00083 25.2 2.1 15 23-37 154-168 (477)
147 TIGR01524 ATPase-IIIB_Mg magne 32.9 62 0.0013 26.5 3.5 26 8-36 519-544 (867)
148 PRK14010 potassium-transportin 32.8 63 0.0014 25.8 3.4 26 8-36 445-470 (673)
149 PRK01122 potassium-transportin 32.8 60 0.0013 26.0 3.3 26 8-36 449-474 (679)
150 PF12123 Amidase02_C: N-acetyl 32.7 66 0.0014 16.2 2.4 18 5-22 25-42 (45)
151 TIGR01041 ATP_syn_B_arch ATP s 32.4 70 0.0015 24.3 3.5 27 7-33 186-213 (458)
152 PF07765 KIP1: KIP1-like prote 32.3 50 0.0011 18.6 2.1 18 2-19 20-37 (74)
153 PF14883 GHL13: Hypothetical g 32.1 89 0.0019 22.4 3.8 29 3-33 13-42 (294)
154 PRK13367 protocatechuate 4,5-d 31.9 86 0.0019 23.6 3.8 32 4-37 32-63 (420)
155 KOG1976|consensus 31.8 74 0.0016 23.1 3.3 31 6-37 200-230 (391)
156 cd07365 MhpB_like Subunit B of 31.8 1.2E+02 0.0025 21.8 4.4 28 7-36 29-56 (310)
157 KOG0371|consensus 31.6 58 0.0013 23.1 2.7 27 8-34 71-97 (319)
158 cd01445 TST_Repeats Thiosulfat 31.6 88 0.0019 19.3 3.4 23 10-32 81-103 (138)
159 cd02778 MopB_CT_Thiosulfate-R- 31.5 71 0.0015 18.8 2.9 24 14-37 37-60 (123)
160 TIGR01647 ATPase-IIIA_H plasma 31.5 66 0.0014 25.9 3.4 25 8-35 446-470 (755)
161 PF00931 NB-ARC: NB-ARC domain 31.4 1.1E+02 0.0024 20.7 4.2 29 6-35 2-30 (287)
162 cd00508 MopB_CT_Fdh-Nap-like T 31.4 60 0.0013 18.9 2.6 23 15-37 43-65 (120)
163 cd07399 MPP_YvnB Bacillus subt 31.1 1E+02 0.0022 20.4 3.8 29 3-34 18-46 (214)
164 PRK13372 pcmA protocatechuate 31.1 91 0.002 23.7 3.8 32 4-37 179-210 (444)
165 COG0474 MgtA Cation transport 31.0 50 0.0011 27.3 2.7 26 8-36 551-576 (917)
166 COG2217 ZntA Cation transport 30.8 56 0.0012 26.3 2.9 25 9-36 542-566 (713)
167 PRK05244 Der GTPase activator; 30.7 82 0.0018 20.8 3.2 21 3-23 128-148 (177)
168 PRK09280 F0F1 ATP synthase sub 30.7 82 0.0018 24.0 3.6 25 7-31 186-210 (463)
169 COG4570 Rus Holliday junction 30.6 71 0.0015 20.0 2.8 19 4-22 83-101 (132)
170 cd07956 Anticodon_Ia_Arg Antic 30.6 48 0.001 20.7 2.1 21 87-107 136-156 (156)
171 TIGR01039 atpD ATP synthase, F 30.5 80 0.0017 24.1 3.5 24 7-30 185-208 (461)
172 COG2968 Uncharacterized conser 30.5 76 0.0017 22.0 3.1 24 2-25 70-93 (243)
173 COG4974 XerD Site-specific rec 30.5 29 0.00064 24.8 1.2 26 3-28 3-29 (300)
174 PF11799 IMS_C: impB/mucB/samB 30.5 93 0.002 18.1 3.3 29 3-31 32-60 (127)
175 cd07406 MPP_CG11883_N Drosophi 30.4 84 0.0018 21.5 3.4 25 8-34 25-49 (257)
176 cd07372 2A5CPDO_B The beta sub 30.3 1.2E+02 0.0026 21.5 4.2 26 5-32 35-60 (294)
177 KOG2756|consensus 30.3 80 0.0017 22.6 3.3 31 6-36 224-255 (349)
178 cd02786 MopB_CT_3 The MopB_CT_ 30.3 69 0.0015 18.7 2.7 24 14-37 38-61 (116)
179 COG3078 Uncharacterized protei 30.2 90 0.0019 20.1 3.2 21 3-23 129-149 (169)
180 PRK14976 5'-3' exonuclease; Pr 30.2 96 0.0021 21.8 3.7 31 4-37 113-143 (281)
181 cd00845 MPP_UshA_N_like Escher 30.1 84 0.0018 21.0 3.4 24 8-33 24-47 (252)
182 PF11121 DUF2639: Protein of u 30.1 49 0.0011 16.2 1.6 13 10-22 6-18 (40)
183 PRK13427 F0F1 ATP synthase sub 30.0 37 0.00081 23.9 1.7 12 26-37 79-90 (289)
184 PRK13425 F0F1 ATP synthase sub 29.9 40 0.00087 23.8 1.8 12 26-37 79-90 (291)
185 TIGR03395 sphingomy sphingomye 29.2 89 0.0019 21.9 3.4 31 7-37 160-190 (283)
186 cd02789 MopB_CT_FmdC-FwdD The 29.1 69 0.0015 18.7 2.5 24 14-37 38-61 (106)
187 PRK10016 DNA gyrase inhibitor; 29.0 1.5E+02 0.0032 18.4 4.4 30 5-34 26-55 (156)
188 TIGR03305 alt_F1F0_F1_bet alte 28.9 86 0.0019 23.8 3.4 25 7-31 180-204 (449)
189 PF04852 DUF640: Protein of un 28.9 68 0.0015 20.1 2.5 19 4-22 93-111 (132)
190 PF14136 DUF4303: Domain of un 28.6 1.4E+02 0.003 18.6 4.0 26 9-34 108-139 (155)
191 PF04666 Glyco_transf_54: N-Ac 28.5 56 0.0012 23.3 2.3 33 3-35 67-99 (297)
192 smart00836 DALR_1 DALR anticod 28.5 54 0.0012 19.4 2.0 21 87-107 102-122 (122)
193 COG3581 Uncharacterized protei 28.5 93 0.002 23.3 3.5 30 8-37 55-85 (420)
194 TIGR02370 pyl_corrinoid methyl 28.3 1.1E+02 0.0024 20.1 3.6 24 8-31 151-174 (197)
195 cd01519 RHOD_HSP67B2 Member of 28.0 80 0.0017 17.8 2.7 25 11-35 53-77 (106)
196 PRK13422 F0F1 ATP synthase sub 27.9 40 0.00088 23.8 1.6 12 26-37 78-89 (298)
197 TIGR00109 hemH ferrochelatase. 27.9 1.5E+02 0.0033 21.2 4.5 33 3-36 167-199 (322)
198 TIGR01517 ATPase-IIB_Ca plasma 27.8 76 0.0016 26.2 3.2 26 8-36 583-608 (941)
199 PRK13426 F0F1 ATP synthase sub 27.7 40 0.00087 23.7 1.5 12 26-37 78-89 (291)
200 PF03975 CheD: CheD chemotacti 27.6 44 0.00095 20.0 1.5 26 3-28 17-42 (114)
201 TIGR03496 FliI_clade1 flagella 27.6 95 0.0021 23.2 3.5 25 7-31 176-200 (411)
202 PRK12597 F0F1 ATP synthase sub 27.5 87 0.0019 23.8 3.3 25 7-31 185-209 (461)
203 cd02783 MopB_CT_2 The MopB_CT_ 27.5 76 0.0016 20.0 2.6 24 14-37 39-62 (156)
204 cd07320 Extradiol_Dioxygenase_ 27.3 1.1E+02 0.0025 20.7 3.6 27 8-35 145-171 (260)
205 PF02698 DUF218: DUF218 domain 27.2 1E+02 0.0022 19.0 3.2 25 6-32 83-107 (155)
206 cd00419 Ferrochelatase_C Ferro 26.8 96 0.0021 19.2 3.0 28 9-37 79-109 (135)
207 PF12213 Dpoe2NT: DNA polymera 26.8 74 0.0016 17.7 2.2 22 4-25 39-60 (73)
208 cd02794 MopB_CT_DmsA-EC The Mo 26.3 91 0.002 18.5 2.7 24 14-37 37-60 (121)
209 PF02631 RecX: RecX family; I 26.3 68 0.0015 19.1 2.2 21 4-24 6-26 (121)
210 PRK11493 sseA 3-mercaptopyruva 26.2 1.2E+02 0.0026 21.0 3.6 26 10-35 73-98 (281)
211 PF00501 AMP-binding: AMP-bind 26.0 1.9E+02 0.004 20.6 4.7 33 3-35 25-57 (417)
212 PF07796 DUF1638: Protein of u 25.9 1.8E+02 0.0039 18.4 4.4 28 10-37 16-43 (166)
213 PF09612 HtrL_YibB: Bacterial 25.7 42 0.0009 23.7 1.3 30 3-32 45-75 (271)
214 PF00072 Response_reg: Respons 25.6 1.3E+02 0.0027 16.8 3.2 24 10-35 59-82 (112)
215 cd01401 PncB_like Nicotinate p 25.6 1.2E+02 0.0025 22.6 3.6 27 7-33 286-312 (377)
216 PF01205 UPF0029: Uncharacteri 25.4 1.2E+02 0.0025 18.3 3.0 21 10-31 65-85 (110)
217 TIGR01523 ATPase-IID_K-Na pota 25.4 94 0.002 26.2 3.4 26 8-36 650-675 (1053)
218 cd02779 MopB_CT_Arsenite-Ox Th 25.4 90 0.0019 18.3 2.6 24 14-37 40-63 (115)
219 cd02791 MopB_CT_Nitrate-R-NapA 25.3 82 0.0018 18.5 2.4 24 14-37 42-65 (122)
220 cd02792 MopB_CT_Formate-Dh-Na- 25.3 94 0.002 18.2 2.7 23 15-37 43-65 (122)
221 cd01449 TST_Repeat_2 Thiosulfa 25.0 94 0.002 18.0 2.6 25 11-35 65-89 (118)
222 PF00762 Ferrochelatase: Ferro 24.8 79 0.0017 22.6 2.6 28 9-37 243-273 (316)
223 PF12010 DUF3502: Domain of un 24.7 82 0.0018 19.4 2.4 18 5-22 99-116 (134)
224 COG4242 CphB Cyanophycinase an 24.7 1.3E+02 0.0029 21.2 3.5 28 8-35 195-228 (293)
225 PLN02949 transferase, transfer 24.4 1.5E+02 0.0033 22.3 4.1 31 6-37 50-80 (463)
226 smart00843 Ftsk_gamma This dom 24.2 69 0.0015 17.4 1.7 12 10-21 37-48 (63)
227 KOG0366|consensus 24.0 43 0.00094 23.8 1.1 26 78-103 275-300 (329)
228 PRK00782 hypothetical protein; 24.0 1.5E+02 0.0032 20.6 3.8 16 22-37 168-183 (267)
229 TIGR03884 sel_bind_Methan sele 23.9 1.1E+02 0.0023 17.3 2.4 24 4-29 26-49 (74)
230 PRK14110 F0F1 ATP synthase sub 23.9 56 0.0012 23.0 1.7 12 26-37 80-91 (291)
231 TIGR01529 argR_whole arginine 23.8 74 0.0016 20.0 2.1 25 8-32 102-131 (146)
232 cd02781 MopB_CT_Acetylene-hydr 23.6 1.1E+02 0.0024 18.2 2.8 24 14-37 40-63 (130)
233 cd08164 MPP_Ted1 Saccharomyces 23.6 1.4E+02 0.0031 19.8 3.5 28 4-33 27-54 (193)
234 cd02793 MopB_CT_DMSOR-BSOR-TMA 23.6 97 0.0021 18.7 2.5 24 14-37 40-63 (129)
235 PF04548 AIG1: AIG1 family; I 23.4 91 0.002 20.6 2.6 11 20-30 114-124 (212)
236 PF09423 PhoD: PhoD-like phosp 23.4 1.3E+02 0.0028 22.4 3.6 26 8-35 351-377 (453)
237 cd02439 DMB-PRT_CobT Nicotinat 23.3 44 0.00096 23.9 1.1 18 21-38 28-45 (315)
238 KOG4277|consensus 23.3 68 0.0015 23.4 2.0 27 8-34 339-367 (468)
239 TIGR00341 conserved hypothetic 23.2 1.2E+02 0.0025 22.1 3.1 19 6-24 51-69 (325)
240 PRK15052 D-tagatose-1,6-bispho 23.1 1.5E+02 0.0032 22.4 3.7 29 9-37 64-92 (421)
241 PF02900 LigB: Catalytic LigB 23.1 91 0.002 21.4 2.6 28 6-35 27-54 (272)
242 cd04824 eu_ALAD_PBGS_cysteine_ 23.0 83 0.0018 22.8 2.3 28 4-31 163-190 (320)
243 PRK01045 ispH 4-hydroxy-3-meth 22.9 1.1E+02 0.0025 21.8 3.0 26 11-37 44-78 (298)
244 PF02082 Rrf2: Transcriptional 22.9 1E+02 0.0022 17.1 2.3 15 7-21 40-54 (83)
245 TIGR02810 agaZ_gatZ D-tagatose 22.8 1.5E+02 0.0033 22.4 3.7 29 9-37 63-91 (420)
246 PF02348 CTP_transf_3: Cytidyl 22.7 1.4E+02 0.003 19.3 3.3 26 8-35 26-51 (217)
247 PRK13358 protocatechuate 4,5-d 22.7 2.1E+02 0.0046 19.7 4.4 15 22-36 42-56 (269)
248 cd01462 VWA_YIEM_type VWA YIEM 22.6 1.9E+02 0.0041 17.5 3.8 26 7-33 79-104 (152)
249 PRK10997 yieM hypothetical pro 22.6 1.3E+02 0.0027 23.2 3.4 29 5-34 399-427 (487)
250 KOG0796|consensus 22.5 1.1E+02 0.0025 22.1 2.9 22 2-23 124-145 (319)
251 PF13730 HTH_36: Helix-turn-he 22.5 1.2E+02 0.0025 15.1 2.4 16 6-21 39-54 (55)
252 PRK13490 chemoreceptor glutami 22.4 90 0.002 20.1 2.3 26 3-28 64-89 (162)
253 COG0444 DppD ABC-type dipeptid 22.4 1.6E+02 0.0034 21.4 3.6 28 7-36 190-217 (316)
254 cd07373 2A5CPDO_A The alpha su 22.3 2.2E+02 0.0049 19.7 4.4 26 7-34 29-54 (271)
255 PLN02449 ferrochelatase 22.3 2.1E+02 0.0045 22.1 4.4 34 3-37 255-288 (485)
256 cd02782 MopB_CT_1 The MopB_CT_ 22.2 1.2E+02 0.0025 18.2 2.7 24 14-37 40-63 (129)
257 PRK00035 hemH ferrochelatase; 22.0 2.2E+02 0.0048 20.2 4.4 33 4-37 168-201 (333)
258 TIGR01522 ATPase-IIA2_Ca golgi 22.0 1.2E+02 0.0027 24.9 3.4 27 7-36 531-557 (884)
259 cd02777 MopB_CT_DMSOR-like The 21.8 1.2E+02 0.0025 18.2 2.6 24 14-37 41-64 (127)
260 cd00032 CASc Caspase, interleu 21.7 1.5E+02 0.0033 20.1 3.4 12 25-36 76-87 (243)
261 PF09397 Ftsk_gamma: Ftsk gamm 21.6 84 0.0018 17.1 1.7 13 9-21 37-49 (65)
262 TIGR01657 P-ATPase-V P-type AT 21.5 1.1E+02 0.0024 25.7 3.1 26 8-36 660-685 (1054)
263 PF05060 MGAT2: N-acetylglucos 21.5 1.7E+02 0.0037 21.6 3.7 29 7-35 44-72 (356)
264 PRK03341 arginine repressor; P 21.5 82 0.0018 20.5 2.0 26 8-33 121-151 (168)
265 TIGR00991 3a0901s02IAP34 GTP-b 21.4 1.4E+02 0.0031 21.5 3.3 27 5-31 136-162 (313)
266 COG0462 PrsA Phosphoribosylpyr 21.3 97 0.0021 22.4 2.4 27 10-37 150-176 (314)
267 PF12371 DUF3651: Protein of u 21.1 63 0.0014 17.7 1.2 17 18-35 8-24 (73)
268 cd01853 Toc34_like Toc34-like 21.1 1.1E+02 0.0025 20.9 2.7 13 19-31 146-158 (249)
269 PRK09192 acyl-CoA synthetase; 21.0 2.4E+02 0.0051 21.4 4.6 34 3-36 53-86 (579)
270 PF09784 L31: Mitochondrial ri 20.9 1.6E+02 0.0035 17.6 2.9 20 2-21 28-47 (103)
271 PF12791 RsgI_N: Anti-sigma fa 20.7 86 0.0019 16.0 1.6 14 21-34 3-16 (56)
272 TIGR01501 MthylAspMutase methy 20.6 1.9E+02 0.0042 18.0 3.4 17 7-23 67-83 (134)
273 PRK05943 50S ribosomal protein 20.6 80 0.0017 18.2 1.6 27 66-95 25-51 (94)
274 PF09861 DUF2088: Domain of un 20.5 2.2E+02 0.0047 19.1 3.9 33 5-37 70-104 (204)
275 cd07411 MPP_SoxB_N Thermus the 20.3 1.7E+02 0.0037 20.0 3.5 26 8-34 37-62 (264)
276 cd01427 HAD_like Haloacid deha 20.3 1.7E+02 0.0038 16.5 3.2 21 8-31 28-48 (139)
277 TIGR01136 cysKM cysteine synth 20.2 2.5E+02 0.0054 19.6 4.3 16 22-37 278-293 (299)
278 TIGR02536 eut_hyp ethanolamine 20.2 1.7E+02 0.0038 19.7 3.3 28 6-33 2-30 (207)
279 PF09967 DUF2201: VWA-like dom 20.2 1.6E+02 0.0036 17.8 3.0 26 9-36 69-94 (126)
280 PRK15458 tagatose 6-phosphate 20.2 1.7E+02 0.0037 22.1 3.6 29 9-37 67-95 (426)
281 COG3439 Uncharacterized conser 20.1 1.3E+02 0.0027 18.9 2.5 29 5-37 21-49 (137)
282 COG1488 PncB Nicotinic acid ph 20.0 1.9E+02 0.0041 21.6 3.8 29 7-37 276-304 (405)
No 1
>COG3119 AslA Arylsulfatase A and related enzymes [Inorganic ion transport and metabolism]
Probab=99.95 E-value=4.1e-28 Score=177.78 Aligned_cols=96 Identities=38% Similarity=0.532 Sum_probs=85.3
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCCCeEEEEEcCCCCCCCCCCcccCCCCCCCCcccccCCccCCCccccEEEEcCCCC-C-
Q psy7399 1 MLKSLDESVGRVIQSLEEEGLLGNSLVVFISDNGGPTVDSLHFHGNTASNWPLRGTKYSFHEGGVRNVAALWSPLLR-K- 78 (107)
Q Consensus 1 ~i~~~D~~ig~l~~~l~~~g~~~nTlii~tsDHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vP~ii~~p~~~-~- 78 (107)
||+++|.+||+|+++|++.|++|||+||||||||.... ....++++.|.+.|++++||||||+||+.. +
T Consensus 265 ~v~~~D~~iGrll~~L~~~g~~DnTivvftsDhG~~~~---------~~~~~~~~~k~~~~egg~~VPliI~~Pg~i~~~ 335 (475)
T COG3119 265 CVRYLDDQIGRLLDALKELGLLDNTIVVFTSDHGAWLG---------AHGTPFRGYKGTLYEGGTRVPLIIRWPGGIKPG 335 (475)
T ss_pred HHHHHHHHHhHHHHHHHHhCCccCcEEEEeCCCCCccc---------CCCCcccccccccccCcccceEEEeccCccCCC
Confidence 58999999999999999999999999999999997542 334667778888999999999999999864 3
Q ss_pred CeeeccceehhhHHHHHHHHhCCCCCC
Q psy7399 79 GQVLENLMHITDWLPTLYFIAGKEKNI 105 (107)
Q Consensus 79 ~~~~~~~~~~~Di~pTil~l~gi~~~~ 105 (107)
+..++.+++.+||+||+|+++|++.|+
T Consensus 336 g~~~~~~v~~~Di~PTll~~aG~~~~~ 362 (475)
T COG3119 336 GRVVDALVSLIDLLPTLLDAAGVPPPK 362 (475)
T ss_pred CccccccchhhHHHHHHHHHcCCCCcc
Confidence 778899999999999999999999886
No 2
>TIGR03417 chol_sulfatase choline-sulfatase.
Probab=99.94 E-value=1.1e-26 Score=171.13 Aligned_cols=93 Identities=28% Similarity=0.369 Sum_probs=79.1
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCCCeEEEEEcCCCCCCCCCCcccCCCCCCCCcccccCCccCCCccccEEEEcCCCCCCe
Q psy7399 1 MLKSLDESVGRVIQSLEEEGLLGNSLVVFISDNGGPTVDSLHFHGNTASNWPLRGTKYSFHEGGVRNVAALWSPLLRKGQ 80 (107)
Q Consensus 1 ~i~~~D~~ig~l~~~l~~~g~~~nTlii~tsDHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vP~ii~~p~~~~~~ 80 (107)
+|+++|++||+|+++|++.|++|||+||||||||....+ ...+ .|...|++++||||||+||+..++.
T Consensus 258 ~v~~~D~~iG~il~~L~~~g~~dnTivvf~sDHG~~~G~----------~g~~--~K~~~ye~~~~vPlii~~p~~~~~~ 325 (500)
T TIGR03417 258 AISYLDDKIGELLQTLEETRQADDTIVLFTSDHGDMLGE----------RGLW--YKMSFFEGSARVPLMVHAPGRFAPG 325 (500)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcCCcEEEEECCCchhhcc----------CCcc--cccCcccccceEeEEEEeCCCCCCc
Confidence 478999999999999999999999999999999987621 1211 3678899999999999999954333
Q ss_pred eeccceehhhHHHHHHHHhCCCCCC
Q psy7399 81 VLENLMHITDWLPTLYFIAGKEKNI 105 (107)
Q Consensus 81 ~~~~~~~~~Di~pTil~l~gi~~~~ 105 (107)
+++.+++++||+||||+++|++.|.
T Consensus 326 ~~~~~v~~~Di~pTil~l~g~~~~~ 350 (500)
T TIGR03417 326 RVAAPVSTVDLLPTLVDLAGGDMDE 350 (500)
T ss_pred ccCCceeehhHHHHHHHHhCCCCcc
Confidence 4688999999999999999999873
No 3
>PRK13759 arylsulfatase; Provisional
Probab=99.93 E-value=1.1e-25 Score=165.34 Aligned_cols=94 Identities=29% Similarity=0.501 Sum_probs=80.1
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCCCeEEEEEcCCCCCCCCCCcccCCCCCCCCcccccCCccCCCccccEEEEcCCC----
Q psy7399 1 MLKSLDESVGRVIQSLEEEGLLGNSLVVFISDNGGPTVDSLHFHGNTASNWPLRGTKYSFHEGGVRNVAALWSPLL---- 76 (107)
Q Consensus 1 ~i~~~D~~ig~l~~~l~~~g~~~nTlii~tsDHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vP~ii~~p~~---- 76 (107)
+|+++|++||+|+++|++.|+++||+|||+||||.... ....+ .|...|++++||||||+||+.
T Consensus 273 ~i~~~D~~iG~l~~~l~~~g~~dnTiiv~tsDHG~~~g----------~~~~~--~k~~~~e~~~rVPlii~~p~~~~~~ 340 (485)
T PRK13759 273 LITHIDHQIGRFLQALKEFGLLDNTIILFVSDHGDMLG----------DHYLF--RKGYPYEGSAHIPFIIYDPGGLLAG 340 (485)
T ss_pred HHHHHHHHHHHHHHHHHhcCCccCeEEEEECCCccccc----------ccccc--cCCccccccceeeEEEecCCccccc
Confidence 47899999999999999999999999999999998752 11222 356778999999999999984
Q ss_pred CCCeeeccceehhhHHHHHHHHhCCCCCCC
Q psy7399 77 RKGQVLENLMHITDWLPTLYFIAGKEKNID 106 (107)
Q Consensus 77 ~~~~~~~~~~~~~Di~pTil~l~gi~~~~~ 106 (107)
..+.+++.+++++||+|||++++|++.|..
T Consensus 341 ~~g~~~~~~v~~~Di~pTil~l~g~~~p~~ 370 (485)
T PRK13759 341 NRGTVIDQVVELRDIMPTLLDLAGGTIPDD 370 (485)
T ss_pred CCCceecCcceecchHHHHHHHhCCCCCcC
Confidence 236678999999999999999999998864
No 4
>PF00884 Sulfatase: Sulfatase; InterPro: IPR000917 Sulphatases 3.1.6. from EC are enzymes that hydrolyze various sulphate esters. The sequence of different types of sulphatases are available and have shown to be structurally related [, , ]; these include: arylsulphatase A 3.1.6.8 from EC (ASA), a lysosomal enzyme which hydrolyses cerebroside sulphate; arylsulphatase B 3.1.6.12 from EC (ASB), which hydrolyses the sulphate ester group from N-acetylgalactosamine 4-sulphate residues of dermatan sulphate; arylsulphatase C (ASD) and E (ASE); steryl-sulphatase 3.1.6.2 from EC (STS), a membrane bound microsomal enzyme which hydrolyses 3-beta-hydroxy steroid sulphates; iduronate 2-sulphatase precursor 3.1.6.13 from EC (IDS), a lysosomal enzyme that hydrolyses the 2-sulphate groups from non-reducing-terminal iduronic acid residues in dermatan sulphate and heparan sulphate; N-acetylgalactosamine-6-sulphatase 3.1.6.4 from EC, which hydrolyses the 6-sulphate groups of the N-acetyl-d-galactosamine 6-sulphate units of chondroitin sulphate and the D-galactose 6-sulphate units of keratan sulphate; glucosamine-6-sulphatase 3.1.6.14 from EC (G6S), which hydrolyses the N-acetyl-D-glucosamine 6-sulphate units of heparan sulphate and keratan sulphate; N-sulphoglucosamine sulphohydrolase 3.10.1.1 from EC (sulphamidase), the lysosomal enzyme that catalyses the hydrolysis of N-sulpho-d-glucosamine into glucosamine and sulphate; sea urchin embryo arylsulphatase 3.1.6.1 from EC; green algae arylsulphatase 3.1.6.1 from EC, which plays an important role in the mineralisation of sulphates; and arylsulphatase 3.1.6.1 from EC from Escherichia coli (aslA), Klebsiella aerogenes (gene atsA) and Pseudomonas aeruginosa (gene atsA). ; GO: 0008484 sulfuric ester hydrolase activity, 0008152 metabolic process; PDB: 1P49_A 1FSU_A 2QZU_A 2W5Q_A 2W5T_A 2W5S_A 2W5R_A 3LXQ_A 1HDH_B 1E33_P ....
Probab=99.90 E-value=7.8e-24 Score=145.58 Aligned_cols=91 Identities=25% Similarity=0.388 Sum_probs=76.3
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCCeEEEEEcCCCCCCCCCCcccCCCCCCCCcccccC-CccCCCccccEEEEcCCCCCCe
Q psy7399 2 LKSLDESVGRVIQSLEEEGLLGNSLVVFISDNGGPTVDSLHFHGNTASNWPLRGTKY-SFHEGGVRNVAALWSPLLRKGQ 80 (107)
Q Consensus 2 i~~~D~~ig~l~~~l~~~g~~~nTlii~tsDHG~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~vP~ii~~p~~~~~~ 80 (107)
+.++|++|++|+++||++|.++||+||++||||....+ ........+. ..+++..+||++|++|+..+.+
T Consensus 217 i~~~D~~l~~~~~~l~~~~~~d~TiiiitsDHG~~~~e---------~~~~~~~~~~~~~~~~~~~vP~~i~~p~~~~~~ 287 (308)
T PF00884_consen 217 IAYVDDQLGRFIEYLKEQGLYDNTIIIITSDHGESFGE---------NGHYFHGGKGNDLYEESYHVPLIIYWPGGEPQQ 287 (308)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGEEEEEEESSSSSTGG---------HHTTSSSSTTHSSSHHHHBEEEEEECTTSSSCE
T ss_pred HHHHHHHhhhhhhhhhhcCCcccceeEEecCcCccccc---------ccccccccccccchhhccccceEEEcCCCCCCc
Confidence 68999999999999999999999999999999998721 0112223444 6788889999999999998877
Q ss_pred eeccceehhhHHHHHHHHhCC
Q psy7399 81 VLENLMHITDWLPTLYFIAGK 101 (107)
Q Consensus 81 ~~~~~~~~~Di~pTil~l~gi 101 (107)
+.+..++++||+||||+++||
T Consensus 288 ~~~~~~s~~Di~pTll~l~Gi 308 (308)
T PF00884_consen 288 TIDRLVSHIDIAPTLLDLLGI 308 (308)
T ss_dssp EECS-EEGGGHHHHHHHHTT-
T ss_pred EECCeEEhHHHHHHHHHHhCC
Confidence 889999999999999999996
No 5
>KOG3867|consensus
Probab=99.89 E-value=2e-23 Score=152.93 Aligned_cols=103 Identities=42% Similarity=0.567 Sum_probs=92.9
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCCCeEEEEEcCCCCCCCCCCcccCCCCCCCCcccccCCccCCCccccEEEEcCCCCC-C
Q psy7399 1 MLKSLDESVGRVIQSLEEEGLLGNSLVVFISDNGGPTVDSLHFHGNTASNWPLRGTKYSFHEGGVRNVAALWSPLLRK-G 79 (107)
Q Consensus 1 ~i~~~D~~ig~l~~~l~~~g~~~nTlii~tsDHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vP~ii~~p~~~~-~ 79 (107)
||+++|..||+++++|++.|+++||+|+||||||....+ .....+.++++++.+...|++++|+|.+++||+.++ +
T Consensus 274 ~V~~mD~~VG~ildaL~~~gl~nnTiv~FtSDnG~~~~~---~~~~~~~n~~~~g~~~~~weggir~~~~~~~p~~~~~g 350 (528)
T KOG3867|consen 274 MVSEMDWSVGRILDALDDLGLANNTLVIFTSDNGGPLEG---GRGNGGSNGPWNGIKKPGWEGGIRVPGLARWPGVVPAG 350 (528)
T ss_pred HHHHHHHHHHHHHHHHHHhCcccCeEEEEeCCCCccccC---ccccccccCCccceecCCccccCCCcchhcCccccccc
Confidence 689999999999999999999999999999999998855 233445667888888889999999999999999888 8
Q ss_pred eeeccceehhhHHHHHHHHhCCCCCCC
Q psy7399 80 QVLENLMHITDWLPTLYFIAGKEKNID 106 (107)
Q Consensus 80 ~~~~~~~~~~Di~pTil~l~gi~~~~~ 106 (107)
++..++++.+|++||+++++|++.|.+
T Consensus 351 ~v~~e~~s~~D~~PTl~~lag~~~p~d 377 (528)
T KOG3867|consen 351 QVSNELTSLLDILPTLADLAGGPLPQD 377 (528)
T ss_pred eeccccccccccchHHHHHcCCCCCcC
Confidence 999999999999999999999999864
No 6
>KOG3731|consensus
Probab=99.87 E-value=2.9e-22 Score=143.06 Aligned_cols=95 Identities=28% Similarity=0.282 Sum_probs=83.3
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCCeEEEEEcCCCCCCCCCCcccCCCCCCCCcccccCCccCCCccccEEEEcCCCCCCee
Q psy7399 2 LKSLDESVGRVIQSLEEEGLLGNSLVVFISDNGGPTVDSLHFHGNTASNWPLRGTKYSFHEGGVRNVAALWSPLLRKGQV 81 (107)
Q Consensus 2 i~~~D~~ig~l~~~l~~~g~~~nTlii~tsDHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vP~ii~~p~~~~~~~ 81 (107)
+..+|..|.++.+.|++.|.++||.||.|||||..... + .....|...||-.+||||+|++|++.++..
T Consensus 279 lqSvd~sve~l~n~l~elgeLdnTyivytsDhGyhlGq----f-------gl~kgks~pyEfdiRVPf~iRgP~v~~~~~ 347 (541)
T KOG3731|consen 279 LQSVDDSVERLYNLLGELGELDNTYIVYTSDHGYHLGQ----F-------GLWKGKSMPYEFDIRVPFLIRGPGVAPNKT 347 (541)
T ss_pred HHhHHHHHHHHHHHHHHhhcccceEEEEEcCCcccccc----c-------ccccCCCCceeEeeeeeEEeeCCCCCcccc
Confidence 35689999999999999999999999999999988721 1 122256667999999999999999999899
Q ss_pred eccceehhhHHHHHHHHhCCCCCCCC
Q psy7399 82 LENLMHITDWLPTLYFIAGKEKNIDS 107 (107)
Q Consensus 82 ~~~~~~~~Di~pTil~l~gi~~~~~~ 107 (107)
.+.+|..+|++|||++++|++.|+.|
T Consensus 348 ~~~Iv~niDlaPTilDiAGlp~p~~m 373 (541)
T KOG3731|consen 348 VNEIVLNIDLAPTILDIAGLPKPACM 373 (541)
T ss_pred chhhheeccccchhhhhcCCCCcccc
Confidence 99999999999999999999999765
No 7
>PRK11598 putative metal dependent hydrolase; Provisional
Probab=99.82 E-value=8.1e-20 Score=135.66 Aligned_cols=93 Identities=18% Similarity=0.143 Sum_probs=72.5
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCCCeEEEEEcCCCCCCCCCCcccCCCCCCCCcccccCCcc----CCCccccEEEEcCC-
Q psy7399 1 MLKSLDESVGRVIQSLEEEGLLGNSLVVFISDNGGPTVDSLHFHGNTASNWPLRGTKYSFH----EGGVRNVAALWSPL- 75 (107)
Q Consensus 1 ~i~~~D~~ig~l~~~l~~~g~~~nTlii~tsDHG~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~vP~ii~~p~- 75 (107)
+|+++|++||+++++||+.+.++||+||++||||+...+ +..+ .++..| ++++||||++|+|.
T Consensus 423 sI~ytD~~lg~ii~~Lk~~~~~~nT~iIy~SDHGe~lge----------~g~~--~hg~~y~~aP~~~~~VPliiw~s~~ 490 (545)
T PRK11598 423 TILYVDYIVDKAINLLKQHQDKFNTSLVYLSDHGESLGE----------NGIY--LHGLPYAIAPDQQTHVPMLLWLSPD 490 (545)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcCCeEEEEECcCCCcccc----------CCcc--cCCCccccCccccccccEEEEECcc
Confidence 378999999999999999999999999999999998732 1111 122222 67899999998754
Q ss_pred CCCC----------eeeccceehhhHHHHHHHHhCCCCCC
Q psy7399 76 LRKG----------QVLENLMHITDWLPTLYFIAGKEKNI 105 (107)
Q Consensus 76 ~~~~----------~~~~~~~~~~Di~pTil~l~gi~~~~ 105 (107)
..++ ...++++++.||+||+|+++|++.|.
T Consensus 491 ~~~~~~~~~~~l~~~~~~~~~s~ddl~~TlL~l~gI~t~~ 530 (545)
T PRK11598 491 YQKRYGVDQQCLQKQAQTQDYSQDNLFSTLLGLTGVQTKE 530 (545)
T ss_pred hhccccchhhhhhhhccCCceeHHhHHHHHHHHhCCCCCC
Confidence 3321 12356899999999999999998875
No 8
>COG3083 Predicted hydrolase of alkaline phosphatase superfamily [General function prediction only]
Probab=99.80 E-value=2.1e-19 Score=130.22 Aligned_cols=95 Identities=22% Similarity=0.353 Sum_probs=75.9
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCCeEEEEEcCCCCCCCCCCcccCCCCCCCCcccccCCccCCCccccEEEEcCCCCCCee
Q psy7399 2 LKSLDESVGRVIQSLEEEGLLGNSLVVFISDNGGPTVDSLHFHGNTASNWPLRGTKYSFHEGGVRNVAALWSPLLRKGQV 81 (107)
Q Consensus 2 i~~~D~~ig~l~~~l~~~g~~~nTlii~tsDHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vP~ii~~p~~~~~~~ 81 (107)
+.++|.+||++++.|+++|.+|||+||+|||||..+...... +.|+........++||++|+|||..++ .
T Consensus 429 ~~~vD~~I~~vLe~L~~~~~L~NTvVIITs~HG~eFne~~~~---------ywG~~t~ysr~qlqVPlvihwpg~~~~-~ 498 (600)
T COG3083 429 LREVDSQIGRVLEQLRNSGLLDNTVVIITADHGEEFNEEEQN---------YWGHGTNYSRYQLQVPLVIHWPGTPAG-R 498 (600)
T ss_pred HHHHHHHHHHHHHHHhhcccccceEEEEECCCCcccCccccc---------cccCCCccccceecccEEEEeCCCcch-h
Confidence 578999999999999999999999999999999988541111 122222222335899999999998864 4
Q ss_pred eccceehhhHHHHHHH-HhCCCCCCC
Q psy7399 82 LENLMHITDWLPTLYF-IAGKEKNID 106 (107)
Q Consensus 82 ~~~~~~~~Di~pTil~-l~gi~~~~~ 106 (107)
+...++++|++||++. ++|+..|..
T Consensus 499 v~~lTsH~Dl~~tLMq~ll~V~np~~ 524 (600)
T COG3083 499 VNHLTSHLDLMTTLMQRLLGVSNPPS 524 (600)
T ss_pred hcCccchhhhHHHHHHHHhcCCCChh
Confidence 5889999999999999 999998763
No 9
>PRK12363 phosphoglycerol transferase I; Provisional
Probab=99.80 E-value=2.3e-19 Score=135.62 Aligned_cols=87 Identities=17% Similarity=0.111 Sum_probs=69.1
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCCCeEEEEEcCCCCCCCCCCcccCCCCCCCCcccccCCccCCCccccEEEEcC-CCCCC
Q psy7399 1 MLKSLDESVGRVIQSLEEEGLLGNSLVVFISDNGGPTVDSLHFHGNTASNWPLRGTKYSFHEGGVRNVAALWSP-LLRKG 79 (107)
Q Consensus 1 ~i~~~D~~ig~l~~~l~~~g~~~nTlii~tsDHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vP~ii~~p-~~~~~ 79 (107)
+++++|++||+|+++||++|+++||+|||+||||..... .... .....|+|+++++| +++++
T Consensus 360 tI~ysD~aIG~FId~LKksglydNTIIV~~GDH~~~~~~---------~~~~--------L~~~kRvP~~I~ip~gik~g 422 (703)
T PRK12363 360 AIKCSDRLIGQLVDRIRNSRYGKNTIIVIASDHLAMPND---------LSDV--------LTKQKRENLLLFLGKDIAPQ 422 (703)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcCCeEEEEEcCCCccccc---------cccc--------CCCCCeEEEEEEECCcCCCC
Confidence 368999999999999999999999999999999965411 0011 11224889888885 55556
Q ss_pred eeeccceehhhHHHHHHHHhCCCCC
Q psy7399 80 QVLENLMHITDWLPTLYFIAGKEKN 104 (107)
Q Consensus 80 ~~~~~~~~~~Di~pTil~l~gi~~~ 104 (107)
.+.++..+++||+|||++++|++.+
T Consensus 423 ~i~~~~gS~iDI~PTLL~LLGi~~~ 447 (703)
T PRK12363 423 QVVTRAGTTLDSGATLLQLLEPGMR 447 (703)
T ss_pred cEECCeeeeeHHHHHHHHHhCCCCC
Confidence 6779999999999999999998754
No 10
>PRK11560 phosphoethanolamine transferase; Provisional
Probab=99.79 E-value=3.7e-19 Score=132.37 Aligned_cols=91 Identities=16% Similarity=0.191 Sum_probs=70.2
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCCCeEEEEEcCCCCCCCCCCcccCCCCCCCCcccccCCcc-CCCccccEEEEcCCCC--
Q psy7399 1 MLKSLDESVGRVIQSLEEEGLLGNSLVVFISDNGGPTVDSLHFHGNTASNWPLRGTKYSFH-EGGVRNVAALWSPLLR-- 77 (107)
Q Consensus 1 ~i~~~D~~ig~l~~~l~~~g~~~nTlii~tsDHG~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~vP~ii~~p~~~-- 77 (107)
+|+++|+.||++++.||+ +||+|||+||||+.... +..+.+.+...+ ++++||||++|+++..
T Consensus 437 sI~ytD~~lg~ii~~Lk~----~nTivIy~SDHGe~lge----------~~~lhg~~~~~~~~~~~~VPliv~~s~~~~~ 502 (558)
T PRK11560 437 SVLYVDHFISSVIDQLRD----KKAIVFYAADHGESINE----------REHLHGTPREMAPPEQFRVPMMVWMSDKYLA 502 (558)
T ss_pred HHHHHHHHHHHHHHHHHh----cCeEEEEEcCCCCcCCC----------CcccCCCCcccCCccCeeeCEEEEEcccccc
Confidence 478999999999999998 58999999999998621 222334444433 4789999999984311
Q ss_pred ------------CCeeeccceehhhHHHHHHHHhCCCCCC
Q psy7399 78 ------------KGQVLENLMHITDWLPTLYFIAGKEKNI 105 (107)
Q Consensus 78 ------------~~~~~~~~~~~~Di~pTil~l~gi~~~~ 105 (107)
++...++++++.||+||+|+++|++.|.
T Consensus 503 ~p~~~~~~~~l~~~~~~~~~~s~~dlf~TlL~~~gv~~p~ 542 (558)
T PRK11560 503 NPDNAQAFAQLKKQADMKVPRRHVELFDTILGCLGYTSPD 542 (558)
T ss_pred CCccchhHHHhccccccCCceeehhHHHHHHHHcCCCCCh
Confidence 1334578899999999999999999763
No 11
>PRK03776 phosphoglycerol transferase I; Provisional
Probab=99.78 E-value=1.2e-18 Score=132.22 Aligned_cols=87 Identities=14% Similarity=0.143 Sum_probs=69.5
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCCCeEEEEEcCCCCCCCCCCcccCCCCCCCCcccccCCccCCCccccEEEEcCCCCCCe
Q psy7399 1 MLKSLDESVGRVIQSLEEEGLLGNSLVVFISDNGGPTVDSLHFHGNTASNWPLRGTKYSFHEGGVRNVAALWSPLLRKGQ 80 (107)
Q Consensus 1 ~i~~~D~~ig~l~~~l~~~g~~~nTlii~tsDHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vP~ii~~p~~~~~~ 80 (107)
+++++|++||+|+++||++|+++||+|||+||||..... .... .......++++++.+|+. .+.
T Consensus 363 ~v~~~D~~iG~fi~~Lk~~g~~dNTiIV~~sDHG~m~g~----------~~~~-----l~~~kr~~i~lII~~p~~-~g~ 426 (762)
T PRK03776 363 AVSCSQENIAALINKIKASPWFKNTVIVVSSDHLAMNNT----------AWKY-----LNKQDRNNLFFVIRGDKP-QQE 426 (762)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccCeEEEEEccCCccccc----------cchh-----hccCCceeEEEEEECCCc-CCc
Confidence 478999999999999999999999999999999986521 0100 001112467899999984 467
Q ss_pred eeccceehhhHHHHHHHHhCCCC
Q psy7399 81 VLENLMHITDWLPTLYFIAGKEK 103 (107)
Q Consensus 81 ~~~~~~~~~Di~pTil~l~gi~~ 103 (107)
++++.++++|++||+|+++|++.
T Consensus 427 ~~~~~vs~IDI~PTILdlaGi~~ 449 (762)
T PRK03776 427 TLAVKRNTMDNGATVLDILGGDN 449 (762)
T ss_pred eECCceeehhHHHHHHHHhCCCc
Confidence 78999999999999999999976
No 12
>PRK09598 lipid A phosphoethanolamine transferase; Reviewed
Probab=99.77 E-value=1.1e-18 Score=129.32 Aligned_cols=94 Identities=11% Similarity=0.051 Sum_probs=72.6
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCCCeEEEEEcCCCCCCCCCCcccCCCCCCCCcccccCCccCCCccccEEEEcCCCCC-C
Q psy7399 1 MLKSLDESVGRVIQSLEEEGLLGNSLVVFISDNGGPTVDSLHFHGNTASNWPLRGTKYSFHEGGVRNVAALWSPLLRK-G 79 (107)
Q Consensus 1 ~i~~~D~~ig~l~~~l~~~g~~~nTlii~tsDHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vP~ii~~p~~~~-~ 79 (107)
+|+|+|+.++++++.||+.+. ||+||++||||+...+ +..+..+. .+...++++.|||+++|+|+..+ +
T Consensus 409 sI~ytD~~l~~ii~~Lk~~~~--~t~iIy~SDHGe~lge----~g~~~hg~----p~~~~~~~~~~VP~ii~~s~~~~~~ 478 (522)
T PRK09598 409 TIFYNDYLLDKIISMLKNLKQ--PALMIYLSDHGESLGE----GAFYLHGI----PKSIAPKEQYEIPFIVWASDSFKKQ 478 (522)
T ss_pred HHHHHHHHHHHHHHHHHhCCC--CeEEEEEccCcccccc----CCcccCCC----CcCCCccccccccEEEEEChhhhhh
Confidence 378999999999999999876 9999999999998732 11111111 12344678899999999987443 2
Q ss_pred ---eeeccceehhhHHHHHHHHhCCCCC
Q psy7399 80 ---QVLENLMHITDWLPTLYFIAGKEKN 104 (107)
Q Consensus 80 ---~~~~~~~~~~Di~pTil~l~gi~~~ 104 (107)
...++++|+.||+||+|+++|++.|
T Consensus 479 ~~~~~~~~~~S~ddif~TlL~l~gv~t~ 506 (522)
T PRK09598 479 HSIIQTQTPINQNVIFHSVLGVFDFKNP 506 (522)
T ss_pred chhhhcCCCchHHHHHHHHHHHcCCCCc
Confidence 2457899999999999999999887
No 13
>PRK10649 hypothetical protein; Provisional
Probab=99.76 E-value=1.8e-18 Score=129.44 Aligned_cols=95 Identities=17% Similarity=0.185 Sum_probs=72.7
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCCCeEEEEEcCCCCCCCCCCcccCCCCCCCCcccc-cCCccCCCccccEEEEcCCC-C-
Q psy7399 1 MLKSLDESVGRVIQSLEEEGLLGNSLVVFISDNGGPTVDSLHFHGNTASNWPLRGT-KYSFHEGGVRNVAALWSPLL-R- 77 (107)
Q Consensus 1 ~i~~~D~~ig~l~~~l~~~g~~~nTlii~tsDHG~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~vP~ii~~p~~-~- 77 (107)
+|+++|+.||++++.||+. .+||+|||+||||+...+. +. ..+.|. +...++++.|||||+|++.. .
T Consensus 432 sI~y~D~~l~~ii~~Lk~~--~~nt~iiy~SDHGe~~~~~-------~~-~~~lG~~~~~~~~~~~~VP~ii~~s~~~~~ 501 (577)
T PRK10649 432 ANLYNDHVVASLIKDFKAT--DPNGFLVYFSDHGEEVYDT-------PP-HKTQGRNEDNPTRHMYTIPFLLWTSEKWQA 501 (577)
T ss_pred HHHHHHHHHHHHHHHHhcC--CCCeEEEEECCCCcccccC-------Cc-ccccCCCCCCCCcccceecEEEEECHHHHh
Confidence 4789999999999999987 4899999999999985220 00 112222 24567888999999998542 2
Q ss_pred --C---CeeeccceehhhHHHHHHHHhCCCCCC
Q psy7399 78 --K---GQVLENLMHITDWLPTLYFIAGKEKNI 105 (107)
Q Consensus 78 --~---~~~~~~~~~~~Di~pTil~l~gi~~~~ 105 (107)
+ +..+++++++.|++||+++++|++.+.
T Consensus 502 ~~~~~~~~~~~~~~s~~Dl~~Tll~laGi~~~~ 534 (577)
T PRK10649 502 AHPRDFSQDVDRKYSLAELIHTWSDLAGLSYDG 534 (577)
T ss_pred hCchhhhhhhcCCeeHHhHHHHHHHHcCCCCCc
Confidence 1 234689999999999999999998764
No 14
>TIGR03397 acid_phos_Burk acid phosphatase, Burkholderia-type. A member of this family, AcpA from Burkholderia mallei, has been charactized as a surface-bound glycoprotein with acid phosphatase activity, as can be shown with the colorigenic substrate 5-bromo-4-chloro-3-indolyl phosphate. This family shares regions of sequence similarity with phosphocholine-preferring phospholipase C enzymes (TIGR03396) from many of the same species.
Probab=99.74 E-value=1.9e-17 Score=120.83 Aligned_cols=89 Identities=25% Similarity=0.181 Sum_probs=78.2
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCCeEEEEEcC-CCCCCCCCCcccCCCCCCCCcccccCCccCCCccccEEEEcCCCCCCe
Q psy7399 2 LKSLDESVGRVIQSLEEEGLLGNSLVVFISD-NGGPTVDSLHFHGNTASNWPLRGTKYSFHEGGVRNVAALWSPLLRKGQ 80 (107)
Q Consensus 2 i~~~D~~ig~l~~~l~~~g~~~nTlii~tsD-HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vP~ii~~p~~~~~~ 80 (107)
+...|+.|+++++.|++.+.++||+||||+| ||..... ... .|...|+++.|||+|+.||+.++|.
T Consensus 365 v~~gD~~vg~vl~aL~~~p~w~NTlII~T~DENGG~~Dh---------v~p----Pk~~~~ggG~RVP~IVisP~~k~G~ 431 (483)
T TIGR03397 365 VAAGDRHIADVIAHLQKSPQWKNMVVIVTYDENGGFWDH---------VAP----PKGDRWGPGTRIPAIVVSPFAKKGY 431 (483)
T ss_pred HHHHHHHHHHHHHHHHhCccccCcEEEEEEECCCCcCcC---------CCC----CCcCCCCCccEEEEEEEECCCCCCc
Confidence 6789999999999999999999999999999 9854311 111 2567899999999999999997789
Q ss_pred eeccceehhhHHHHHHHHhCCCC
Q psy7399 81 VLENLMHITDWLPTLYFIAGKEK 103 (107)
Q Consensus 81 ~~~~~~~~~Di~pTil~l~gi~~ 103 (107)
+.+.+++++||+|||.+++|++.
T Consensus 432 v~~~~~dh~SiL~Tie~~~GL~~ 454 (483)
T TIGR03397 432 VDHTPYDTTSILRFITRRFGLPP 454 (483)
T ss_pred EeCceeeeehHHHHHHHHhCCCC
Confidence 99999999999999999999987
No 15
>TIGR01307 pgm_bpd_ind 2,3-bisphosphoglycerate-independent phosphoglycerate mutase. This protein is about double in length of, and devoid of homology to the form of phosphoglycerate mutase that uses 2,3-bisphosphoglycerate as a cofactor.
Probab=99.71 E-value=6.9e-17 Score=118.53 Aligned_cols=88 Identities=16% Similarity=0.177 Sum_probs=65.0
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCCeEEEEEcCCCCCCCCCCcccCCCCCCCCcccccCCccCCCccccEEEEcCCCCCCee
Q psy7399 2 LKSLDESVGRVIQSLEEEGLLGNSLVVFISDNGGPTVDSLHFHGNTASNWPLRGTKYSFHEGGVRNVAALWSPLLRKGQV 81 (107)
Q Consensus 2 i~~~D~~ig~l~~~l~~~g~~~nTlii~tsDHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vP~ii~~p~~~~~~~ 81 (107)
|+.+|++||+|+++|++.|. +||||||||..... .. ....+. ......+||||++||+..+ .
T Consensus 408 IE~vD~~LGrIl~aLke~G~----~VIiTADHGnae~m-----~d-~~g~p~------t~HT~~~VP~Ii~~p~~i~--~ 469 (501)
T TIGR01307 408 VEALDVCLGRIVEACKKVGG----TLFLTADHGNAEEM-----ID-ENGNPH------TAHTTNPVPFVCVGAKNVK--L 469 (501)
T ss_pred HHHHHHHHHHHHHHHHhCCC----EEEEEcCCCChhhc-----cC-CCCCcc------cCCCCeEeeEEEEECCccc--c
Confidence 78999999999999999886 69999999975311 00 001111 1234689999999995322 1
Q ss_pred eccceehhhHHHHHHHHhCCCCCCCC
Q psy7399 82 LENLMHITDWLPTLYFIAGKEKNIDS 107 (107)
Q Consensus 82 ~~~~~~~~Di~pTil~l~gi~~~~~~ 107 (107)
.....+++||+||+|+++|++.|.+|
T Consensus 470 ~~~~~sL~DIaPTiLdL~Gi~~P~em 495 (501)
T TIGR01307 470 IREGGVLADIAPTILDLMGLEQPAEM 495 (501)
T ss_pred cCCCceEhHHHHHHHHHhCcCCCCCC
Confidence 34457899999999999999999865
No 16
>PRK05362 phosphopentomutase; Provisional
Probab=99.70 E-value=6.6e-17 Score=116.00 Aligned_cols=81 Identities=21% Similarity=0.277 Sum_probs=64.7
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCCCeEEEEEcCCCCCCCCCCcccCCCCCCCCcccccCCccCCCccccEEEEcCCCCCCe
Q psy7399 1 MLKSLDESVGRVIQSLEEEGLLGNSLVVFISDNGGPTVDSLHFHGNTASNWPLRGTKYSFHEGGVRNVAALWSPLLRKGQ 80 (107)
Q Consensus 1 ~i~~~D~~ig~l~~~l~~~g~~~nTlii~tsDHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vP~ii~~p~~~~~~ 80 (107)
+++.+|+++++++++|++ ||+||||||||..... + +... ...+||+|++||+.. +.
T Consensus 304 ale~~D~~lg~ll~~L~~-----~tlliiTaDHG~d~t~------------~--gt~H----T~e~VPlIi~gp~v~-~~ 359 (394)
T PRK05362 304 ALEEFDARLPELLAALKE-----DDLLIITADHGNDPTW------------P--GTDH----TREYVPLLVYGPKFK-GG 359 (394)
T ss_pred HHHHHHHHHHHHHHHhcc-----CCEEEEeCCCCCCCCC------------C--CCCC----CCCceeEEEEECCCC-cc
Confidence 378999999999999974 7999999999974411 0 0111 135999999999976 55
Q ss_pred eeccceehhhHHHHHHHHhCCCCCC
Q psy7399 81 VLENLMHITDWLPTLYFIAGKEKNI 105 (107)
Q Consensus 81 ~~~~~~~~~Di~pTil~l~gi~~~~ 105 (107)
.....+++.||+||+++++|++.|.
T Consensus 360 ~l~~~~sl~DI~pTia~l~Gv~~P~ 384 (394)
T PRK05362 360 SLGHRETFADIGATIADNFGVEPME 384 (394)
T ss_pred EECCCCEehhHHHHHHHHcCcCCCC
Confidence 6788899999999999999999764
No 17
>PRK05434 phosphoglyceromutase; Provisional
Probab=99.70 E-value=9.1e-17 Score=118.35 Aligned_cols=88 Identities=16% Similarity=0.161 Sum_probs=65.6
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCCCeEEEEEcCCCCCCCCCCcccCCCCCCCCcccccCCccCCCccccEEEEcCCCCCCe
Q psy7399 1 MLKSLDESVGRVIQSLEEEGLLGNSLVVFISDNGGPTVDSLHFHGNTASNWPLRGTKYSFHEGGVRNVAALWSPLLRKGQ 80 (107)
Q Consensus 1 ~i~~~D~~ig~l~~~l~~~g~~~nTlii~tsDHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vP~ii~~p~~~~~~ 80 (107)
+|+.+|++||+++++|++.|. +||||||||....- ..... .+....+...+||||++||+...
T Consensus 413 AIe~vD~~LGrll~aLk~~g~----ivIITADHGn~e~m-----~d~~t------g~~~~~HT~~~VPlII~~p~~i~-- 475 (507)
T PRK05434 413 AVEAVDECLGRVVDAVLKVGG----TLLITADHGNAEQM-----IDPET------GQPHTAHTTNPVPFILVGGKALR-- 475 (507)
T ss_pred HHHHHHHHHHHHHHHHHhCCC----EEEEEcCCCccccc-----ccCCC------CCcccCCCCeeeEEEEEECCccc--
Confidence 378999999999999999876 89999999975421 00000 11122345689999999997221
Q ss_pred eeccceehhhHHHHHHHHhCCCCCCCC
Q psy7399 81 VLENLMHITDWLPTLYFIAGKEKNIDS 107 (107)
Q Consensus 81 ~~~~~~~~~Di~pTil~l~gi~~~~~~ 107 (107)
....++.||+||||+++|++.|++|
T Consensus 476 --~~~~sL~DIaPTIL~LlGi~~P~~m 500 (507)
T PRK05434 476 --LEGGKLADIAPTILDLLGLEQPAEM 500 (507)
T ss_pred --CCCccHHHHHHHHHHHhCcCCCCCC
Confidence 1357899999999999999999865
No 18
>TIGR01696 deoB phosphopentomutase. This protein is involved in the purine and pyrimidine salvage pathway. It catalyzes the conversion of D-ribose 1-phosphate to D-ribose 5-phosphate and the conversion of 2-deoxy-D-ribose 1-phosphate to 2-deoxy-D-ribose 5-phosphate. The seed members of this protein are characterized deoB proteins from E.Coli and Bacillus. This model matches pfam01676 for Metalloenzyme superfamily.
Probab=99.70 E-value=9.2e-17 Score=114.57 Aligned_cols=82 Identities=18% Similarity=0.225 Sum_probs=64.9
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCCCeEEEEEcCCCCCCCCCCcccCCCCCCCCcccccCCccCCCccccEEEEcCCCCCCe
Q psy7399 1 MLKSLDESVGRVIQSLEEEGLLGNSLVVFISDNGGPTVDSLHFHGNTASNWPLRGTKYSFHEGGVRNVAALWSPLLRKGQ 80 (107)
Q Consensus 1 ~i~~~D~~ig~l~~~l~~~g~~~nTlii~tsDHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vP~ii~~p~~~~~~ 80 (107)
+++.+|++|++++++|+ +||+||||||||..+.. .+...+ ..+||+|++||+.+++.
T Consensus 296 ale~vD~~Lg~ll~~L~-----~~tllIITADHG~Dp~~--------------~~t~HT----re~VPlIi~gp~i~~g~ 352 (381)
T TIGR01696 296 ALELFDRRLPELFSLLR-----EDDLLIITADHGNDPTW--------------TGTDHT----REYIPVLVYSPKVKPGH 352 (381)
T ss_pred HHHHHHHHHHHHHHHhc-----cCCEEEEECCCCCCCCC--------------CCCcCC----CCCEeEEEEECCCCCCc
Confidence 47899999999999997 47899999999984311 001111 13899999999976666
Q ss_pred eeccceehhhHHHHHHHHhCCCCCC
Q psy7399 81 VLENLMHITDWLPTLYFIAGKEKNI 105 (107)
Q Consensus 81 ~~~~~~~~~Di~pTil~l~gi~~~~ 105 (107)
......++.||+|||++++|++.|.
T Consensus 353 ~l~~~~slaDIapTIldllGv~~p~ 377 (381)
T TIGR01696 353 SLGHRETFADIGATIADNFGTSDPE 377 (381)
T ss_pred eeCCCCEehhHHHHHHHHcCcCCCC
Confidence 6788899999999999999999764
No 19
>PRK12383 putative mutase; Provisional
Probab=99.62 E-value=1.7e-15 Score=108.89 Aligned_cols=80 Identities=16% Similarity=0.187 Sum_probs=61.9
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCCCeEEEEEcCCCCCCCCCCcccCCCCCCCCcccccCCccCCCccccEEEEcCCCCCCe
Q psy7399 1 MLKSLDESVGRVIQSLEEEGLLGNSLVVFISDNGGPTVDSLHFHGNTASNWPLRGTKYSFHEGGVRNVAALWSPLLRKGQ 80 (107)
Q Consensus 1 ~i~~~D~~ig~l~~~l~~~g~~~nTlii~tsDHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vP~ii~~p~~~~~~ 80 (107)
+++++|+++++++++|+ +++++|||||||..... +++.+ ...+||+++++|+..+ .
T Consensus 312 aiE~iD~~lg~ll~~L~-----~~~lliITaDHG~d~~~-----------------~~t~H-Tre~VPlLi~gp~i~~-~ 367 (406)
T PRK12383 312 RLEVVDRNLARLLEAMT-----PDDCLVVMADHGNDPTI-----------------GHSHH-TREVVPLLVYQKGLQA-T 367 (406)
T ss_pred HHHHHHHHHHHHHHHhc-----cCCEEEEEcCCCCCCCC-----------------CCcCC-CCcceEEEEEECCccc-c
Confidence 47899999999999997 47899999999985411 00111 1258999999999764 2
Q ss_pred eeccceehhhHHHHHHHHhCCCCC
Q psy7399 81 VLENLMHITDWLPTLYFIAGKEKN 104 (107)
Q Consensus 81 ~~~~~~~~~Di~pTil~l~gi~~~ 104 (107)
......++.||+||+++++|++.|
T Consensus 368 ~lg~~~slaDIapTIl~~~Gv~~p 391 (406)
T PRK12383 368 QLGVRTTLSDVGATVCEFFGAPPP 391 (406)
T ss_pred cCCCCcEEhhHHHHHHHHcCCCCC
Confidence 234568999999999999999876
No 20
>COG1368 MdoB Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]
Probab=99.58 E-value=5.8e-15 Score=112.07 Aligned_cols=95 Identities=20% Similarity=0.233 Sum_probs=74.3
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCCeEEEEEcCCCCCCCCCCcccCCCCCCCCcccccCCccCCCccccEEEEcCCCCCCee
Q psy7399 2 LKSLDESVGRVIQSLEEEGLLGNSLVVFISDNGGPTVDSLHFHGNTASNWPLRGTKYSFHEGGVRNVAALWSPLLRKGQV 81 (107)
Q Consensus 2 i~~~D~~ig~l~~~l~~~g~~~nTlii~tsDHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vP~ii~~p~~~~~~~ 81 (107)
++|.|++++++++++|++|+++||++|++|||........ .....+.+. ...+....+||++++.|+...+..
T Consensus 460 ~~y~D~al~~F~~~lkk~~~~~~sviv~~GDH~~~~~~~~------~~~~~~~~~-~~~~~~~~~vP~~i~~~g~~~~~~ 532 (650)
T COG1368 460 VHYADEALGQFIDKLKKSGLYKNSVIVLYGDHYGISGNQN------LAMPKFLGK-SYDIDMLQRVPLLIHAPGIKNKKK 532 (650)
T ss_pred hhhHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCcchhhh------hhhhhhccc-ccchhHHhcCCeEEEcCCCCcccc
Confidence 6899999999999999999999999999999998763311 000111112 133344568999999999887566
Q ss_pred eccceehhhHHHHHHHHhCCCC
Q psy7399 82 LENLMHITDWLPTLYFIAGKEK 103 (107)
Q Consensus 82 ~~~~~~~~Di~pTil~l~gi~~ 103 (107)
.++..+++||+||+++++|++.
T Consensus 533 ~~~~~~qidi~pTil~l~gi~~ 554 (650)
T COG1368 533 IDTVGGQLDIAPTILGLLGIST 554 (650)
T ss_pred ccccccccchhhHHHHHcCCCC
Confidence 7889999999999999999983
No 21
>PLN02538 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
Probab=99.49 E-value=2.7e-13 Score=100.45 Aligned_cols=98 Identities=17% Similarity=0.185 Sum_probs=63.4
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCCeEEEEEcCCCCCCCCCCcccCCCCCCCCcccccC----CccCCCccccEEEEcCCCC
Q psy7399 2 LKSLDESVGRVIQSLEEEGLLGNSLVVFISDNGGPTVDSLHFHGNTASNWPLRGTKY----SFHEGGVRNVAALWSPLLR 77 (107)
Q Consensus 2 i~~~D~~ig~l~~~l~~~g~~~nTlii~tsDHG~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~vP~ii~~p~~~ 77 (107)
|+.+|++|+++++++++.| ..+|+|+|||....-... . ..+.+..+..+ ..-.....||+|+++|+..
T Consensus 447 IE~vD~~Lg~Il~al~~~g----~~liITADHGNaE~M~d~---~-~~G~p~~~~~Gtp~~~t~HT~npVP~Ii~g~~~~ 518 (558)
T PLN02538 447 CEAVDAAVKEILDAVEQVG----GIYLVTADHGNAEDMVKR---D-KSGKPLLDKDGNPQILTSHTLAPVPVAIGGPGLP 518 (558)
T ss_pred HHHHHHHHHHHHHHHHhcC----CEEEEeCCCCCchhhccc---c-ccCCccccccCCCCCCCCCCCCCcCEEEEeCCcc
Confidence 7899999999999998765 689999999966311000 0 00010000000 0111234799999999865
Q ss_pred CCeeec---cceehhhHHHHHHHHhCCCCCCCC
Q psy7399 78 KGQVLE---NLMHITDWLPTLYFIAGKEKNIDS 107 (107)
Q Consensus 78 ~~~~~~---~~~~~~Di~pTil~l~gi~~~~~~ 107 (107)
.+.... ...++.||+||||+++|++.|.+|
T Consensus 519 ~~~~l~~~l~~~gLaDVApTIL~lLGl~~P~em 551 (558)
T PLN02538 519 PGVRFRDDLPTAGLANVAATVMNLHGFEAPADY 551 (558)
T ss_pred cCcccccCccCCcHHhHHHHHHHHhCCCCchhc
Confidence 421211 122599999999999999999987
No 22
>PF01676 Metalloenzyme: Metalloenzyme superfamily; InterPro: IPR006124 This domain unites alkaline phosphatase, N-acetylgalactosamine-4-sulphatase, and cerebroside sulphatase, enzymes with known three-dimensional structures, with phosphopentomutase, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, phosphoglycerol transferase, phosphonate monoesterase, streptomycin-6-phosphate phosphatase, alkaline phosphodiesterase/nucleotide pyrophosphatase PC-1, and several closely related sulphatases. This domain is also related to alkaline phosphatase IPR001952 from INTERPRO []. The most conserved residues are probably involved in metal binding and catalysis.; GO: 0003824 catalytic activity, 0046872 metal ion binding; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3UN5_F 3UN3_B 3M8Y_C 3UO0_B 3UN2_B 3UNY_E ....
Probab=99.48 E-value=1.1e-13 Score=94.61 Aligned_cols=83 Identities=17% Similarity=0.332 Sum_probs=62.5
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCCeEEEEEcCCCCCCCCCCcccCCCCCCCCcccccCCccCCCccccEEEEcCCCCCCee
Q psy7399 2 LKSLDESVGRVIQSLEEEGLLGNSLVVFISDNGGPTVDSLHFHGNTASNWPLRGTKYSFHEGGVRNVAALWSPLLRKGQV 81 (107)
Q Consensus 2 i~~~D~~ig~l~~~l~~~g~~~nTlii~tsDHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vP~ii~~p~~~~~~~ 81 (107)
++.+|+.|++|++++++ +++++|+|||||..... . .+ ....-.||+++++|++....
T Consensus 167 ie~~D~~l~~l~~~~~~----~~~~liiTaDHg~~~~~----------------~-~~-~Ht~~~VPll~~g~~~~~~~- 223 (252)
T PF01676_consen 167 IERIDRFLGRLLEALDK----EDDLLIITADHGNDETM----------------G-HT-SHTREPVPLLIYGPGVRGDS- 223 (252)
T ss_dssp HHHHHHHHHHHHHHHHH----TTEEEEEEESSBSTTTS----------------B-SS-S-B-B-EEEEEECTTEEE-S-
T ss_pred HHHHHHHHHHHHHHHhc----CCCEEEEECCCCCcccc----------------C-Cc-CCCCceEEEEEEeCCCccCc-
Confidence 68999999999999975 46899999999988732 0 01 11223799999999876432
Q ss_pred eccceehhhHHHHHHHHhCCCCCCCC
Q psy7399 82 LENLMHITDWLPTLYFIAGKEKNIDS 107 (107)
Q Consensus 82 ~~~~~~~~Di~pTil~l~gi~~~~~~ 107 (107)
..+..++.|++||+++++|++.|+.|
T Consensus 224 ~~~~~~~~di~~ti~~~~G~~~~~~~ 249 (252)
T PF01676_consen 224 VGEFGELADIAPTILELLGLELPEEM 249 (252)
T ss_dssp C-STSBCGHHHHHHHHHHTGGHHTTC
T ss_pred cCcCCEEehHHHHHHHHcCCCchHhh
Confidence 34556788999999999999998765
No 23
>KOG2125|consensus
Probab=99.37 E-value=3.7e-12 Score=95.64 Aligned_cols=90 Identities=19% Similarity=0.170 Sum_probs=71.8
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCCeEEEEEcCCCCCCCCCCcccCCCCCCCCcccccCCccCCCccccEEEEcCCCC--C-
Q psy7399 2 LKSLDESVGRVIQSLEEEGLLGNSLVVFISDNGGPTVDSLHFHGNTASNWPLRGTKYSFHEGGVRNVAALWSPLLR--K- 78 (107)
Q Consensus 2 i~~~D~~ig~l~~~l~~~g~~~nTlii~tsDHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vP~ii~~p~~~--~- 78 (107)
+++||+.++++.+++++..-.++|++++++|||+...+ .++....+...+|+.++.|+.. .
T Consensus 220 LkEmDeiv~~I~~~~~~~~s~d~tllil~gDHGM~e~G----------------nHGGss~~ET~s~l~~~~~N~~~~d~ 283 (760)
T KOG2125|consen 220 LKEMDEIVKRIHDYLMEHRSGDQTLLILCGDHGMTESG----------------NHGGSSPGETSSPLLFLLPNSNISDW 283 (760)
T ss_pred HHHHHHHHHHHHHHHhhcCCCCceEEEEEccccccccC----------------CCCCCCcccccccEEEEecCCCCccc
Confidence 57999999999999999888889999999999998744 2222223447899999999521 1
Q ss_pred CeeeccceehhhHHHHHHHHhCCCCCCCC
Q psy7399 79 GQVLENLMHITDWLPTLYFIAGKEKNIDS 107 (107)
Q Consensus 79 ~~~~~~~~~~~Di~pTil~l~gi~~~~~~ 107 (107)
.....+.+.++|++|||+.++|++.|+++
T Consensus 284 ~~a~~~rv~QiDl~pTI~~llgvpIP~~n 312 (760)
T KOG2125|consen 284 LAAGLERVEQIDLAPTIALLLGVPIPKGN 312 (760)
T ss_pred chhccchhhhhhhHHHHHHHhCCCccCCC
Confidence 23345678999999999999999999864
No 24
>COG0696 GpmI Phosphoglyceromutase [Carbohydrate transport and metabolism]
Probab=99.24 E-value=4.5e-11 Score=86.98 Aligned_cols=86 Identities=16% Similarity=0.253 Sum_probs=62.0
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCCeEEEEEcCCCCCCCCCCcccCCCCCCCCcccccCCccCCCccccEEEEcC-CCCCCe
Q psy7399 2 LKSLDESVGRVIQSLEEEGLLGNSLVVFISDNGGPTVDSLHFHGNTASNWPLRGTKYSFHEGGVRNVAALWSP-LLRKGQ 80 (107)
Q Consensus 2 i~~~D~~ig~l~~~l~~~g~~~nTlii~tsDHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vP~ii~~p-~~~~~~ 80 (107)
|+.+|++||++++.+++.|. .+++|+|||....- .... +.+ ........||+|.-++ +...
T Consensus 415 vEavD~~lg~ivd~~~~~gg----~~~iTaDHGNaE~m-----~d~~-g~p------~TaHT~npVp~i~~~~~~v~~-- 476 (509)
T COG0696 415 VEAVDECLGRIVDAVKKNGG----TLLITADHGNAEQM-----SDPA-GNP------HTAHTTNPVPVIYTGKKGVKA-- 476 (509)
T ss_pred HHHHHHHHHHHHHHHHhcCC----eEEEeecCcchhhc-----cCCC-CCc------eeccccCCccEEEEcCCccee--
Confidence 67899999999999999874 57889999987621 0000 111 1122345799999873 3322
Q ss_pred eeccceehhhHHHHHHHHhCCCCCCCC
Q psy7399 81 VLENLMHITDWLPTLYFIAGKEKNIDS 107 (107)
Q Consensus 81 ~~~~~~~~~Di~pTil~l~gi~~~~~~ 107 (107)
.+-..+.||+||||+++|++.|.+|
T Consensus 477 --~~~g~LadiAPTiL~llg~~~P~eM 501 (509)
T COG0696 477 --RKSGKLADIAPTILDLLGLEIPAEM 501 (509)
T ss_pred --eeccchhhhhHHHHHHcCCCcchhh
Confidence 1227788999999999999999987
No 25
>KOG4513|consensus
Probab=99.20 E-value=9.7e-11 Score=83.32 Aligned_cols=90 Identities=22% Similarity=0.281 Sum_probs=66.2
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCCeEEEEEcCCCCCCCCCCcccCCCCCCCCcccccCCccCCCccccEEEEcCCCCCCee
Q psy7399 2 LKSLDESVGRVIQSLEEEGLLGNSLVVFISDNGGPTVDSLHFHGNTASNWPLRGTKYSFHEGGVRNVAALWSPLLRKGQV 81 (107)
Q Consensus 2 i~~~D~~ig~l~~~l~~~g~~~nTlii~tsDHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vP~ii~~p~~~~~~~ 81 (107)
++..|.+||+|++++++.| .++++|+|||....- -..+ +.|-+ .....+||++|.+||..++..
T Consensus 431 cEatD~aig~Iy~A~~~~~----y~lvvTADHGNAEkM-----v~~d------gGk~t-sHT~~~VPl~i~~pg~~~g~~ 494 (531)
T KOG4513|consen 431 CEATDEAIGKIYDAIEQVG----YILVVTADHGNAEKM-----VKRD------GGKLT-SHTLKPVPLAIGGPGLVKGVR 494 (531)
T ss_pred HHHHHHHHHHHHHHHHhcC----cEEEEEcCCCCHHHh-----ccCC------CCccc-cccccccceEecCCcccccee
Confidence 5789999999999999986 478899999987521 0001 12222 223468999999997765322
Q ss_pred ----eccceehhhHHHHHHHHhCCCCCCCC
Q psy7399 82 ----LENLMHITDWLPTLYFIAGKEKNIDS 107 (107)
Q Consensus 82 ----~~~~~~~~Di~pTil~l~gi~~~~~~ 107 (107)
.+.--++.|++||++.+.|++.|.+|
T Consensus 495 f~~~~dt~p~L~dVApTVl~imG~p~PsEm 524 (531)
T KOG4513|consen 495 FRGDVDTDPGLADVAPTVLNIMGFPAPSEM 524 (531)
T ss_pred eccccccCchhhhhhHHHHHHhCCCCcccc
Confidence 24446789999999999999999886
No 26
>PF02995 DUF229: Protein of unknown function (DUF229); InterPro: IPR004245 Members of this family are uncharacterised with a long conserved region that may contain several domains.
Probab=99.18 E-value=2.2e-11 Score=90.27 Aligned_cols=89 Identities=29% Similarity=0.292 Sum_probs=66.2
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCCeEEEEEcCCCCCCCCCCcccCCCCCCCCcccccCCccCCCccccEEEEc-CCC-C--
Q psy7399 2 LKSLDESVGRVIQSLEEEGLLGNSLVVFISDNGGPTVDSLHFHGNTASNWPLRGTKYSFHEGGVRNVAALWS-PLL-R-- 77 (107)
Q Consensus 2 i~~~D~~ig~l~~~l~~~g~~~nTlii~tsDHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vP~ii~~-p~~-~-- 77 (107)
+..+|..+-++++++++.|+++||+|||.||||..... ++.......| .|.|++..+ |.. .
T Consensus 311 ~~~~D~~~~~~l~~~~~~g~l~nT~vi~~SDHG~R~g~-------------~r~t~~G~~E--erlP~l~i~lP~~fr~~ 375 (497)
T PF02995_consen 311 PSSLDDDLLDFLEKLQEEGVLDNTFVIFMSDHGLRFGS-------------FRETSQGKLE--ERLPFLFISLPPWFREK 375 (497)
T ss_pred hHHHHHHHHHHHHHhhhcCcccccEEEEEcCCCcccCc-------------cccccccchh--hcCccceeEcCHHHHhH
Confidence 57899999999999999999999999999999987721 2222222233 377877643 432 1
Q ss_pred -----C--CeeeccceehhhHHHHHHHHhCCCCCC
Q psy7399 78 -----K--GQVLENLMHITDWLPTLYFIAGKEKNI 105 (107)
Q Consensus 78 -----~--~~~~~~~~~~~Di~pTil~l~gi~~~~ 105 (107)
. .....++++..|+..||.+++....+.
T Consensus 376 ~p~~~~nL~~N~~rL~T~~Dlh~TL~~il~~~~~~ 410 (497)
T PF02995_consen 376 YPEAVENLKENQNRLTTPFDLHATLKDILNLQELS 410 (497)
T ss_pred HHHHHHHHHHHHhccCChhHHHHHHHHHhcccccc
Confidence 1 234578999999999999999876643
No 27
>COG1015 DeoB Phosphopentomutase [Carbohydrate transport and metabolism]
Probab=99.12 E-value=2.9e-10 Score=80.50 Aligned_cols=80 Identities=21% Similarity=0.249 Sum_probs=62.6
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCCeEEEEEcCCCCCCCCCCcccCCCCCCCCcccccCCccCCCccccEEEEcCCCCCCee
Q psy7399 2 LKSLDESVGRVIQSLEEEGLLGNSLVVFISDNGGPTVDSLHFHGNTASNWPLRGTKYSFHEGGVRNVAALWSPLLRKGQV 81 (107)
Q Consensus 2 i~~~D~~ig~l~~~l~~~g~~~nTlii~tsDHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vP~ii~~p~~~~~~~ 81 (107)
++++|+.+.++++.|++ +-++|+|+|||..+.. .+... .--+||+++++|+++++ .
T Consensus 308 Le~FD~rL~e~~~~l~e-----dDlLiiTADHGnDPT~--------------~gTdH----TRE~iPvl~y~~~~k~~-~ 363 (397)
T COG1015 308 LEEFDRRLPELIENLRE-----DDLLIITADHGNDPTW--------------GGTDH----TREYIPVLVYGPGLKPG-S 363 (397)
T ss_pred HHHHHHHHHHHHHhcCC-----CCEEEEecCCCCCCCC--------------CCCCc----cccccceEEEcCCccCC-c
Confidence 67899999999999875 4578999999988721 11111 11379999999999985 3
Q ss_pred eccceehhhHHHHHHHHhCCCCCC
Q psy7399 82 LENLMHITDWLPTLYFIAGKEKNI 105 (107)
Q Consensus 82 ~~~~~~~~Di~pTil~l~gi~~~~ 105 (107)
....-+..||..|+++.+|+++|.
T Consensus 364 lg~r~tfADiGaTvA~~fgv~~~~ 387 (397)
T COG1015 364 LGTRETFADIGATVADNFGVSPPQ 387 (397)
T ss_pred ccccccHHHHHHHHHHHhCCCCcc
Confidence 455678899999999999999875
No 28
>KOG2126|consensus
Probab=98.90 E-value=5.8e-09 Score=80.34 Aligned_cols=83 Identities=19% Similarity=0.255 Sum_probs=60.2
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCCeEEEEEcCCCCCCCCCCcccCCCCCCCCcccccCCccCCCccccEEEEcCCCCC---
Q psy7399 2 LKSLDESVGRVIQSLEEEGLLGNSLVVFISDNGGPTVDSLHFHGNTASNWPLRGTKYSFHEGGVRNVAALWSPLLRK--- 78 (107)
Q Consensus 2 i~~~D~~ig~l~~~l~~~g~~~nTlii~tsDHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vP~ii~~p~~~~--- 78 (107)
+..+|+.|+++++.++ |||+++++||||+...| .++...+..++.-++++.+...-
T Consensus 235 L~qmD~vI~~ii~~md-----edTlLvVmGDHGMt~nG----------------dHGGdS~dEv~a~lf~ySKk~~f~~l 293 (895)
T KOG2126|consen 235 LVQMDRVINEIIKKMD-----EDTLLVVMGDHGMTDNG----------------DHGGDSEDEVEATLFAYSKKHRFALL 293 (895)
T ss_pred HHHHHHHHHHHHHHhc-----cCeeEEEecCCCCCCCC----------------CCCCccHHHhhhheeEEecCccccCC
Confidence 4689999999999988 78999999999998754 22222233355566776654221
Q ss_pred -CeeeccceehhhHHHHHHHHhCCCCCC
Q psy7399 79 -GQVLENLMHITDWLPTLYFIAGKEKNI 105 (107)
Q Consensus 79 -~~~~~~~~~~~Di~pTil~l~gi~~~~ 105 (107)
.....+...++|+.||+.-++|.+.|=
T Consensus 294 p~~~~~~~~~QIDLVptlalllGlPIPf 321 (895)
T KOG2126|consen 294 PPENKVESIEQIDLVPTLALLLGLPIPF 321 (895)
T ss_pred CCCCCccceeeehhHhHHHHHhCCCCCc
Confidence 112234588999999999999999884
No 29
>COG2194 Predicted membrane-associated, metal-dependent hydrolase [General function prediction only]
Probab=98.86 E-value=3.2e-09 Score=79.55 Aligned_cols=90 Identities=18% Similarity=0.202 Sum_probs=64.0
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCCeEEEEEcCCCCCCCCCCcccCCCCCCCCc-cccc-CCccCCCccccEEEEcCCCC-C
Q psy7399 2 LKSLDESVGRVIQSLEEEGLLGNSLVVFISDNGGPTVDSLHFHGNTASNWPL-RGTK-YSFHEGGVRNVAALWSPLLR-K 78 (107)
Q Consensus 2 i~~~D~~ig~l~~~l~~~g~~~nTlii~tsDHG~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~vP~ii~~p~~~-~ 78 (107)
|.|+|+.|.++++.||++.- +|.+|+.||||++..+ +.++ .+.. ....++..|||||+|..... .
T Consensus 425 ilYtD~~L~~vi~~Lk~~~~--~~~liY~SDHGEslgE----------n~~ylhg~p~~~ap~~q~~VP~i~w~S~~~~~ 492 (555)
T COG2194 425 ILYTDYFLSKLIDQLKDKKD--NTSLIYFSDHGESLGE----------NGPYLHGTPYEIAPQEQYHVPFIVWSSDKFQQ 492 (555)
T ss_pred hhhhHHHHHHHHHHHHhCCC--CeEEEEEcCccHhhcc----------CCcccccCcccCCchhheeeeEEEEEChHHHh
Confidence 67999999999999999875 9999999999998732 1221 1111 12346789999999986411 1
Q ss_pred --C----------eeeccceehhhHHHHHHHHhCCCC
Q psy7399 79 --G----------QVLENLMHITDWLPTLYFIAGKEK 103 (107)
Q Consensus 79 --~----------~~~~~~~~~~Di~pTil~l~gi~~ 103 (107)
+ .......++.+++.|++.+.++..
T Consensus 493 ~~~~~~~~~c~~~~~~~~~~~~d~lf~s~lg~~~~~~ 529 (555)
T COG2194 493 KHPRQKDLRCLNYFAQELSYSHDNLFHSLLGVSGVKT 529 (555)
T ss_pred hhhhhhHHHHHHHhhhccchhHHHhHhhccCcccccc
Confidence 2 111123578999999999888765
No 30
>cd00016 alkPPc Alkaline phosphatase homologues; alkaline phosphatases are non-specific phosphomonoesterases that catalyze the hydrolysis reaction via a phosphoseryl intermediate to produce inorganic phosphate and the corresponding alcohol, optimally at high pH. Alkaline phosphatase exists as a dimer, each monomer binding 2 zinc atoms and one magnesium atom, which are essential for enzymatic activity.
Probab=98.81 E-value=6e-08 Score=70.09 Aligned_cols=94 Identities=17% Similarity=0.169 Sum_probs=61.6
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCCeEEEEEcCCCCCCCCCCc-ccCC--C---------CCCCCccc---ccCCccCCCcc
Q psy7399 2 LKSLDESVGRVIQSLEEEGLLGNSLVVFISDNGGPTVDSLH-FHGN--T---------ASNWPLRG---TKYSFHEGGVR 66 (107)
Q Consensus 2 i~~~D~~ig~l~~~l~~~g~~~nTlii~tsDHG~~~~~~~~-~~~~--~---------~~~~~~~~---~~~~~~~~~~~ 66 (107)
+..+|+.|+++++.++ ..++|+||+|||||........ .... . ....++.. ...+.-..+.-
T Consensus 276 l~~~D~av~~~l~~l~---~~~dTLiIvTADHg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~Htg~~ 352 (384)
T cd00016 276 TLAFDDAVEAALDFAK---KDGDTLVVVTADHSHGGTILGYAGRGNPILGLADAPELDVDGLPYTTLTYANTTGTHGGED 352 (384)
T ss_pred HHHHHHHHHHHHHHhh---CCCCeEEEEECCCCCCccccCCCCCCCcccccccccccccCCCCceEEEecCCCCCCcCce
Confidence 5789999999999998 3578999999999986421000 0000 0 00111100 00122234568
Q ss_pred ccEEEEcCCCCCCeeeccceehhhHHHHHHHHhCC
Q psy7399 67 NVAALWSPLLRKGQVLENLMHITDWLPTLYFIAGK 101 (107)
Q Consensus 67 vP~ii~~p~~~~~~~~~~~~~~~Di~pTil~l~gi 101 (107)
||+++++|+... ......+.||++.|+..+++
T Consensus 353 Vpv~a~Gp~a~~---f~g~~ent~I~~~i~~al~~ 384 (384)
T cd00016 353 VPVFAYGPGSHL---FRGVMENTEIAHVMAYALGL 384 (384)
T ss_pred eeEEeecCCccc---cCcceecHHHHHHHHHHhcC
Confidence 999999998753 45678899999999998875
No 31
>KOG2124|consensus
Probab=98.79 E-value=7.3e-09 Score=79.72 Aligned_cols=90 Identities=18% Similarity=0.276 Sum_probs=71.1
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCCeEEEEEcCCCCCCCCCCcccCCCCCCCCcccccCCccCCCccccEEEEcCCCCCC--
Q psy7399 2 LKSLDESVGRVIQSLEEEGLLGNSLVVFISDNGGPTVDSLHFHGNTASNWPLRGTKYSFHEGGVRNVAALWSPLLRKG-- 79 (107)
Q Consensus 2 i~~~D~~ig~l~~~l~~~g~~~nTlii~tsDHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vP~ii~~p~~~~~-- 79 (107)
++++|+.|.++.+.+++-=-.++|..++|+|||....+ .++.-.+++++.|++.||.|++..
T Consensus 226 l~~~d~~i~~~y~l~e~~fnD~kTayi~TaDhgms~~g----------------sHg~G~~~~~~TPlv~WGaGik~~~~ 289 (883)
T KOG2124|consen 226 LKYTDKGIRELYDLFENYFNDGKTAYIFTADHGMSDFG----------------SHGDGHPENTRTPLVAWGAGIKYPVP 289 (883)
T ss_pred hhcCCccHHHHHHHHHHHhcCCcceEEEehhccccccc----------------ccCCCCcccccChHHHhcCCCCccCC
Confidence 67899999999999998755788999999999998744 233334677899999999987641
Q ss_pred ---eeec---------cceehhhHHHHHHHHhCCCCCCCC
Q psy7399 80 ---QVLE---------NLMHITDWLPTLYFIAGKEKNIDS 107 (107)
Q Consensus 80 ---~~~~---------~~~~~~Di~pTil~l~gi~~~~~~ 107 (107)
..-+ .-+.|.||+|-+-.+.|+++|.++
T Consensus 290 n~~~~~~~~~~~~~~~~dl~Qa~IApLMS~LiGlp~P~Ns 329 (883)
T KOG2124|consen 290 NSEQNFDEYSLTEIKRHDLNQADIAPLMSYLIGLPPPVNS 329 (883)
T ss_pred CCCcCCccccccccchhhhhHHHHHHHHHHHhCCCCcccc
Confidence 1111 346789999999999999999874
No 32
>PF04185 Phosphoesterase: Phosphoesterase family; InterPro: IPR007312 This entry includes both bacterial phospholipase C enzymes (3.1.4.3 from EC) and eukaryotic acid phosphatases 3.1.3.2 from EC.; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 2D1G_B.
Probab=98.61 E-value=4.1e-07 Score=65.57 Aligned_cols=100 Identities=20% Similarity=0.203 Sum_probs=58.2
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCCeEEEEEcCCCCCCCCCCcccC-CCCCCCCcccccCCccCCCccccEEEEcCCCCCCe
Q psy7399 2 LKSLDESVGRVIQSLEEEGLLGNSLVVFISDNGGPTVDSLHFHG-NTASNWPLRGTKYSFHEGGVRNVAALWSPLLRKGQ 80 (107)
Q Consensus 2 i~~~D~~ig~l~~~l~~~g~~~nTlii~tsDHG~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~vP~ii~~p~~~~~~ 80 (107)
+..-|..+++++++|+....+++|+||+|=|-+....+...... .........+ ......-|.|||+|+..|-.++|.
T Consensus 276 ~~~gd~~l~~vv~ai~~sp~W~~T~iiIt~DE~gG~~DHV~pp~~~~~~~~~~~g-~~~~~g~G~RVP~ivISP~~k~G~ 354 (376)
T PF04185_consen 276 IADGDAFLARVVEAIRNSPYWKNTAIIITYDENGGFYDHVPPPRSPVPNPDEWVG-PFGFDGLGPRVPAIVISPYAKGGT 354 (376)
T ss_dssp HHHHHHHHHHHHHHHHCSTTGGGEEEEEEES--TT----------TTTT-------STT------B--EEEESTTB-TTE
T ss_pred hhHHHHHHHHHHHHHhcCcCcCCeEEEEEEecCCCcCCCCCCCCCCccccccccc-cCCCCCccccCCeEEeCCCCCCCc
Confidence 36779999999999999999999999999884433211000000 0000000001 123344579999999999999999
Q ss_pred eeccceehhhHHHHHHHHhCCC
Q psy7399 81 VLENLMHITDWLPTLYFIAGKE 102 (107)
Q Consensus 81 ~~~~~~~~~Di~pTil~l~gi~ 102 (107)
+.+...++..|..||-.++|++
T Consensus 355 v~~~~ydh~Silrtie~~~gLP 376 (376)
T PF04185_consen 355 VDHTPYDHTSILRTIEERFGLP 376 (376)
T ss_dssp EE---EETHHHHHHHHHHHT--
T ss_pred EeCCccchhHHHHHHHHHhCCC
Confidence 9999999999999999999975
No 33
>PF01663 Phosphodiest: Type I phosphodiesterase / nucleotide pyrophosphatase; InterPro: IPR002591 This family consists of phosphodiesterases, including human plasma-cell membrane glycoprotein PC-1 / alkaline phosphodiesterase I / nucleotide pyrophosphatase (nppase). These enzymes catalyse the cleavage of phosphodiester and phosphosulphate bonds in NAD, deoxynucleotides and nucleotide sugars []. Another member of this family is ATX an autotaxin, tumor cell motility-stimulating protein which exhibits type I phosphodiesterases activity []. The alignment encompasses the active site [, ]. Also present within this family is 60 kDa Ca2+-ATPase from Myroides odoratus []. This signature also hits a number of ethanolamine phosphate transferase involved in glycosylphosphatidylinositol-anchor biosynthesis.; GO: 0003824 catalytic activity; PDB: 2XRG_A 2XR9_A 3T02_A 3T01_A 3SZZ_A 3SZY_A 3T00_A 3NKM_A 3NKN_A 3NKR_A ....
Probab=98.41 E-value=4.7e-07 Score=63.85 Aligned_cols=37 Identities=32% Similarity=0.728 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCCeEEEEEcCCCCCCC
Q psy7399 2 LKSLDESVGRVIQSLEEEGLLGNSLVVFISDNGGPTV 38 (107)
Q Consensus 2 i~~~D~~ig~l~~~l~~~g~~~nTlii~tsDHG~~~~ 38 (107)
++.+|++||+|+++|++.+..++|.|+++||||....
T Consensus 212 ~~~~D~~ig~l~~~l~~~~~~~~~~iiv~SDHG~~~~ 248 (365)
T PF01663_consen 212 YRRIDQAIGRLLEALDENGLLEDTNIIVTSDHGMTPV 248 (365)
T ss_dssp HHHHHHHHHHHHHHHHHTT-TTTEEEEEEES---EEE
T ss_pred HHHHHHHHHHHHHHHHhhCCCCceEEEEEccCccccc
Confidence 6789999999999999999999999999999998863
No 34
>PRK04024 cofactor-independent phosphoglycerate mutase; Provisional
Probab=98.28 E-value=4e-06 Score=61.26 Aligned_cols=76 Identities=16% Similarity=0.337 Sum_probs=52.2
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCCeEEEEEcCCCCCCCCCCcccCCCCCCCCcccccCCccCCCccccEEEEcCCCCC-C-
Q psy7399 2 LKSLDESVGRVIQSLEEEGLLGNSLVVFISDNGGPTVDSLHFHGNTASNWPLRGTKYSFHEGGVRNVAALWSPLLRK-G- 79 (107)
Q Consensus 2 i~~~D~~ig~l~~~l~~~g~~~nTlii~tsDHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vP~ii~~p~~~~-~- 79 (107)
|+.+|++++++++.+++ +++++++|+|||... . .+.. ..-.||+++++|++.. .
T Consensus 320 iE~iD~~l~~il~~l~~----~~~~liITaDHgtp~-~----------------~~~H---T~~pVP~ii~g~~v~~d~~ 375 (412)
T PRK04024 320 IEKIDKMLGYILDNLDL----DEVYIAVTGDHSTPV-E----------------VKDH---SGDPVPILIYGPGVRVDDV 375 (412)
T ss_pred HHHHHHHHHHHHHHhhc----CCCEEEEecCCCCCc-c----------------cccC---CCCCEeEEEEcCCccCCCC
Confidence 78999999999999863 356899999999853 1 1111 1235999999999854 1
Q ss_pred eeecc---------ceehhhHHHHHHHHhCC
Q psy7399 80 QVLEN---------LMHITDWLPTLYFIAGK 101 (107)
Q Consensus 80 ~~~~~---------~~~~~Di~pTil~l~gi 101 (107)
...++ ...-.|+++.++++++.
T Consensus 376 ~~f~E~~~~~g~l~~~~g~~lm~~~l~~~~~ 406 (412)
T PRK04024 376 EKFNELSAAKGGLGRIRGLDVMPILLDLMNR 406 (412)
T ss_pred CccCHHHHhCCCCCcccHHHHHHHHHHHhch
Confidence 11111 12335999999987764
No 35
>PRK10518 alkaline phosphatase; Provisional
Probab=98.21 E-value=1.7e-05 Score=58.81 Aligned_cols=95 Identities=19% Similarity=0.167 Sum_probs=62.5
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCCeEEEEEcCCCCCCCCCCcccCCCC--------CCCCccccc-----CCccCCCcccc
Q psy7399 2 LKSLDESVGRVIQSLEEEGLLGNSLVVFISDNGGPTVDSLHFHGNTA--------SNWPLRGTK-----YSFHEGGVRNV 68 (107)
Q Consensus 2 i~~~D~~ig~l~~~l~~~g~~~nTlii~tsDHG~~~~~~~~~~~~~~--------~~~~~~~~~-----~~~~~~~~~vP 68 (107)
+..+|+.|+..++..++. +||+||+|+||+....-........+ ...++.-.. .+.-..+..||
T Consensus 369 ~~~fD~AV~~A~~~~~~~---~dTLVIVTADH~h~~~i~g~~~~~~g~~~~~~~~dg~~~~l~y~~g~g~s~~HtG~dV~ 445 (476)
T PRK10518 369 TVDLDEAVQKALEFARKD---GNTLVIVTADHAHSSQIIAPDAKAPGLTQALNTKDGAVMVVSYGNSEEDSQEHTGTQLR 445 (476)
T ss_pred HHHHHHHHHHHHHHHhcC---CCeEEEEEccCCCcceecCCCCCCCCcccccccCCCCeeEEEeccCCCCCcCcCCceeE
Confidence 346899999999999976 48999999999987632110000000 111111000 12233567899
Q ss_pred EEEEcCCCCCCeeeccceehhhHHHHHHHHhCCC
Q psy7399 69 AALWSPLLRKGQVLENLMHITDWLPTLYFIAGKE 102 (107)
Q Consensus 69 ~ii~~p~~~~~~~~~~~~~~~Di~pTil~l~gi~ 102 (107)
+..++|+... ......+.+|+.+|...+++.
T Consensus 446 v~A~GP~A~~---f~G~~eqt~if~~m~~Al~~~ 476 (476)
T PRK10518 446 IAAYGPHAAN---VVGLTDQTDLFYTMKDALGLK 476 (476)
T ss_pred EEecCCcccc---cccceeccHHHHHHHHHhCCC
Confidence 9999998753 455677889999999999863
No 36
>PF07394 DUF1501: Protein of unknown function (DUF1501); InterPro: IPR010869 This family contains a number of hypothetical bacterial proteins of unknown function approximately 400 residues long.
Probab=98.21 E-value=4.9e-06 Score=60.14 Aligned_cols=87 Identities=26% Similarity=0.315 Sum_probs=59.3
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCCeEEEEEcCCCCCCCCCCcccCCCCCCCCcccccCCccCCCccccEEEEcCCCCCCe-
Q psy7399 2 LKSLDESVGRVIQSLEEEGLLGNSLVVFISDNGGPTVDSLHFHGNTASNWPLRGTKYSFHEGGVRNVAALWSPLLRKGQ- 80 (107)
Q Consensus 2 i~~~D~~ig~l~~~l~~~g~~~nTlii~tsDHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vP~ii~~p~~~~~~- 80 (107)
+..+|+.|..|++.|+++|++|+|+||.+||.|....... ..++.+- +.--++++.+.+++.|+
T Consensus 270 l~~L~~alaaf~~dL~~~g~~d~t~vv~~SEFGRt~~~N~--------------~~GtDH~-g~g~~~~v~GGgv~gG~v 334 (392)
T PF07394_consen 270 LPELDQALAAFIQDLKERGLLDDTLVVTMSEFGRTPRENG--------------SGGTDHW-GWGGSMLVAGGGVKGGRV 334 (392)
T ss_pred HHHHHHHHHHHHHHHHhcCCcCceEEEEeeecCCCcccCC--------------CCCCCCC-CCcceEEEeCCCcCCCcE
Confidence 5789999999999999999999999999999999874300 0011110 11123455555444332
Q ss_pred ----------eeccceehhhHHHHHHHHhCCCC
Q psy7399 81 ----------VLENLMHITDWLPTLYFIAGKEK 103 (107)
Q Consensus 81 ----------~~~~~~~~~Di~pTil~l~gi~~ 103 (107)
..+++++.-|++.|++..++++.
T Consensus 335 ~G~~p~l~~~~~~~~~~~~dl~~t~~~~~~~d~ 367 (392)
T PF07394_consen 335 YGETPSLGEDPLDNPVSPRDLYATRLLPLGIDP 367 (392)
T ss_pred eCCCCCcccccccCCcChhhccCCeeeccccCh
Confidence 23456777899999888887765
No 37
>KOG2645|consensus
Probab=98.12 E-value=3.4e-06 Score=61.55 Aligned_cols=38 Identities=29% Similarity=0.578 Sum_probs=35.5
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCCCeEEEEEcCCCCCCC
Q psy7399 1 MLKSLDESVGRVIQSLEEEGLLGNSLVVFISDNGGPTV 38 (107)
Q Consensus 1 ~i~~~D~~ig~l~~~l~~~g~~~nTlii~tsDHG~~~~ 38 (107)
+++.+|..++++++.|+++++.+.+-||++||||+...
T Consensus 202 ~l~~vD~~i~~L~~~Lk~r~L~~~vNvIi~SDHGM~~~ 239 (418)
T KOG2645|consen 202 ALKEVDDFIGYLIKGLKDRNLFEDVNVIIVSDHGMTDI 239 (418)
T ss_pred HHHHHHHHHHHHHHHHHHccccccceEEEeecCCcccc
Confidence 36889999999999999999999999999999999875
No 38
>COG1524 Uncharacterized proteins of the AP superfamily [General function prediction only]
Probab=98.09 E-value=1.3e-05 Score=59.05 Aligned_cols=36 Identities=28% Similarity=0.561 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCCeEEEEEcCCCCCC
Q psy7399 2 LKSLDESVGRVIQSLEEEGLLGNSLVVFISDNGGPT 37 (107)
Q Consensus 2 i~~~D~~ig~l~~~l~~~g~~~nTlii~tsDHG~~~ 37 (107)
++.+|..++++++.+++.|..++++++++||||+..
T Consensus 246 ~~~~d~~l~~ll~~l~~~~~~~~~~~ii~sDHG~~~ 281 (450)
T COG1524 246 VREVDSLLGELLELLKKRGLYEEYLVIITSDHGMSP 281 (450)
T ss_pred hhhhhhhHHHHHHHHHhhccccceEEEEecccccch
Confidence 578999999999999999999999999999999983
No 39
>TIGR00306 apgM 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, archaeal form. This model describes a set of proteins in the Archaea (two each in Methanococcus jannaschii, Methanobacterium thermoautotrophicum, and Archaeoglobus fulgidus) and in Aquifex aeolicus (1 member).
Probab=97.80 E-value=0.0001 Score=53.76 Aligned_cols=53 Identities=13% Similarity=0.250 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCCeEEEEEcCCCCCCCCCCcccCCCCCCCCcccccCCccCCCccccEEEEcCCCCC
Q psy7399 2 LKSLDESVGRVIQSLEEEGLLGNSLVVFISDNGGPTVDSLHFHGNTASNWPLRGTKYSFHEGGVRNVAALWSPLLRK 78 (107)
Q Consensus 2 i~~~D~~ig~l~~~l~~~g~~~nTlii~tsDHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vP~ii~~p~~~~ 78 (107)
|+.+|+.+.++++.|++ ++.++++|+|||... . .+.. ....||+++++|++..
T Consensus 314 IE~iD~~l~~~l~~l~~----~~~~liiTaDHgtp~-~----------------~~~H---t~~pVP~ii~g~~~~~ 366 (396)
T TIGR00306 314 IEKIDSKIVGPLLALDL----DETRLILTADHSTPV-E----------------VKDH---SADPVPIVIVGPGVRV 366 (396)
T ss_pred HHHHHHHHHHHHHHhhh----CCCEEEEeCCCCCCC-C----------------CCCC---CCCCeeEEEEeCCccC
Confidence 68899999998988864 346889999999763 1 1111 1235999999999864
No 40
>TIGR03396 PC_PLC phospholipase C, phosphocholine-specific, Pseudomonas-type. Members of this protein family are bacterial, phosphatidylcholine-hydrolyzing phospholipase C enzymes, with a characteristic domain architecture as found in hemolytyic (PlcH) and nonhemolytic (PlcN) secreted enzymes of Pseudomonas aeruginosa. PlcH hydrolyzes phosphatidylcholine to diacylglycerol and phosphocholine, but unlike PlcN can also hydrolyze sphingomyelin to ceramide ((N-acylsphingosine)) and phosphocholine. Members of this family share the twin-arginine signal sequence for Sec-independent transport across the plasma membrane. PlcH is secreted as a heterodimer with a small chaperone, PlcR, encoded immediately downstream.
Probab=97.78 E-value=0.00031 Score=54.36 Aligned_cols=103 Identities=16% Similarity=0.028 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHHHhC-CCCCeEEEEEcCCCCCCCCCCcccC--C------------CCCCCCcc------cccCCcc
Q psy7399 3 KSLDESVGRVIQSLEEEG-LLGNSLVVFISDNGGPTVDSLHFHG--N------------TASNWPLR------GTKYSFH 61 (107)
Q Consensus 3 ~~~D~~ig~l~~~l~~~g-~~~nTlii~tsDHG~~~~~~~~~~~--~------------~~~~~~~~------~~~~~~~ 61 (107)
.+=+..|.++++.|.+.. +|++|+||++=|-...+.+...... . .+....+. ......+
T Consensus 307 ~~G~~~i~~vl~aL~~nP~vW~~TvliItyDE~gGffDHV~PP~~p~~~~~~~~~g~~t~~~~~e~~~~~~~~~~~~~p~ 386 (690)
T TIGR03396 307 AYGAWYVSRVLDALTANPEVWSKTVLLLNYDENDGFFDHVPPPVPPSYNADGTSAGKSTLDTAGEYFDVPDPAEARGRPI 386 (690)
T ss_pred HHHHHHHHHHHHHHHhChhhhhceEEEEEEeCCCCcccCcCCCCCCCcccccccccccccCCCccccccccccccccCcC
Confidence 345678999999999887 6999999999884333211100000 0 00000000 0011234
Q ss_pred CCCccccEEEEcCCCCCCeeeccceehhhHHHHHHHHhCCCCCC
Q psy7399 62 EGGVRNVAALWSPLLRKGQVLENLMHITDWLPTLYFIAGKEKNI 105 (107)
Q Consensus 62 ~~~~~vP~ii~~p~~~~~~~~~~~~~~~Di~pTil~l~gi~~~~ 105 (107)
.-|.|||+++..|-.+.|.+.++...+..|.-+|-..+|+..|.
T Consensus 387 GlG~RVP~iVISPwsrgG~V~s~~~DHtSvLrflE~~fgl~~~n 430 (690)
T TIGR03396 387 GLGPRVPMYVISPWSKGGWVNSQVFDHTSVLRFLEKRFGVREPN 430 (690)
T ss_pred CccceeeEEEECCCCCCCcccCccccHHHHHHHHHHHhCCCCcc
Confidence 55899999999999999999999999999999999999998763
No 41
>TIGR02535 hyp_Hser_kinase proposed homoserine kinase. The proposal that this family encodes a kinase is based on analogy to phosphomutases which are intramolecular phosphotransferases. A mutase active site could evolve to bring together homoserine and a phosphate donor such as phosphoenolpyruvate resulting in a kinase activity.
Probab=97.63 E-value=0.00027 Score=51.58 Aligned_cols=55 Identities=15% Similarity=0.233 Sum_probs=39.2
Q ss_pred hHHHHHH-HHHHHHHHHHhCCCCCeEEEEEcCCCCCCCCCCcccCCCCCCCCcccccCCccCCCccccEEEEcCCCCC
Q psy7399 2 LKSLDES-VGRVIQSLEEEGLLGNSLVVFISDNGGPTVDSLHFHGNTASNWPLRGTKYSFHEGGVRNVAALWSPLLRK 78 (107)
Q Consensus 2 i~~~D~~-ig~l~~~l~~~g~~~nTlii~tsDHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vP~ii~~p~~~~ 78 (107)
|+.+|+. ++.+++.|++.| ++.++++|||||.... .+.. ....||++++++++..
T Consensus 311 IE~lD~~~~~~ll~al~~~~--~~~~~~vt~DH~tp~~-----------------~~~H---t~~pVP~ii~g~~~~~ 366 (396)
T TIGR02535 311 IELIDSRIVGPLLEALSDRD--EPFRILVLPDHPTPLE-----------------LKTH---TAEPVPFLLYGKGIES 366 (396)
T ss_pred HHHHHHHHHHHHHHHHHhcC--CCeEEEEeeeCccCCC-----------------CCcc---CCCCEeEEEEeCCcCC
Confidence 6889997 568999997654 3458999999996431 1111 2246999999998754
No 42
>PRK04200 cofactor-independent phosphoglycerate mutase; Provisional
Probab=97.59 E-value=0.00028 Score=51.44 Aligned_cols=54 Identities=15% Similarity=0.271 Sum_probs=38.8
Q ss_pred hHHHHHH-HHHHHHHHHHhCCCCCeEEEEEcCCCCCCCCCCcccCCCCCCCCcccccCCccCCCccccEEEEcCCCCC
Q psy7399 2 LKSLDES-VGRVIQSLEEEGLLGNSLVVFISDNGGPTVDSLHFHGNTASNWPLRGTKYSFHEGGVRNVAALWSPLLRK 78 (107)
Q Consensus 2 i~~~D~~-ig~l~~~l~~~g~~~nTlii~tsDHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vP~ii~~p~~~~ 78 (107)
|+.+|+. ++.+++.|++. ++.++++|||||.... .+.. ..--||++++++++..
T Consensus 310 iE~lD~~~~~~ll~al~~~---~~~~l~it~DH~tp~~-----------------~~~H---t~~pVP~ii~g~~~~~ 364 (395)
T PRK04200 310 IEDIDERVVGPILEALKKY---EDYRILVLPDHPTPIE-----------------LKTH---TADPVPFLIYGEGIEP 364 (395)
T ss_pred HHHHHHHhHHHHHHHHHhc---CCCEEEEeccCCcCCC-----------------CCcc---CCCCEeEEEEcCCcCC
Confidence 6889998 55899999752 3668999999996431 1111 1236999999998764
No 43
>COG3635 Predicted phosphoglycerate mutase, AP superfamily [Carbohydrate transport and metabolism]
Probab=97.49 E-value=0.00064 Score=49.07 Aligned_cols=74 Identities=19% Similarity=0.398 Sum_probs=51.8
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCCeEEEEEcCCCCCCCCCCcccCCCCCCCCcccccCCccCCCccccEEEEcCCCCCCe-
Q psy7399 2 LKSLDESVGRVIQSLEEEGLLGNSLVVFISDNGGPTVDSLHFHGNTASNWPLRGTKYSFHEGGVRNVAALWSPLLRKGQ- 80 (107)
Q Consensus 2 i~~~D~~ig~l~~~l~~~g~~~nTlii~tsDHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vP~ii~~p~~~~~~- 80 (107)
|+.+|+.++.+++ + -+++++|++|+||..... -|...+ --||++||++......
T Consensus 323 IE~iD~~i~pll~-~----~~~~~~i~vt~DHsTPv~-----------------vk~Hs~---dPVPili~~~~v~~D~v 377 (408)
T COG3635 323 IEDIDKAIGPLLD-L----DLDEDVIAVTGDHSTPVS-----------------VKDHSG---DPVPILIYGPYVRRDDV 377 (408)
T ss_pred HHHHHHHhhhhhc-c----ccCCcEEEEeCCCCCccc-----------------ccccCC---CCccEEEecCCcccCcc
Confidence 6788988888887 2 246789999999986641 222333 3699999999864311
Q ss_pred -eec---------cceehhhHHHHHHHHhC
Q psy7399 81 -VLE---------NLMHITDWLPTLYFIAG 100 (107)
Q Consensus 81 -~~~---------~~~~~~Di~pTil~l~g 100 (107)
..+ ..+.-.|++|-++++++
T Consensus 378 ~~F~E~~~~~G~Lgri~g~dlm~ill~~~~ 407 (408)
T COG3635 378 KRFDEFSCARGSLGRIRGSDLMPILLDLAG 407 (408)
T ss_pred ceecHhhhhcCCcceeehHHHHHHHHHhhc
Confidence 111 14566799999999876
No 44
>PRK04135 cofactor-independent phosphoglycerate mutase; Provisional
Probab=97.44 E-value=0.00057 Score=49.79 Aligned_cols=74 Identities=19% Similarity=0.201 Sum_probs=49.0
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCCCeEEEEEcCCCCCCCCCCcccCCCCCCCCcccccCCccCCCccccEEEEcCCCCC-C
Q psy7399 1 MLKSLDESVGRVIQSLEEEGLLGNSLVVFISDNGGPTVDSLHFHGNTASNWPLRGTKYSFHEGGVRNVAALWSPLLRK-G 79 (107)
Q Consensus 1 ~i~~~D~~ig~l~~~l~~~g~~~nTlii~tsDHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vP~ii~~p~~~~-~ 79 (107)
+|+.+|+.+..|+ .+ +++.|++||||+.... .+... .--||+++++++... .
T Consensus 305 ~IE~iD~~l~~ll-~l------~~~~ivVT~DH~TP~~-----------------~~~Hs---~dPVP~li~g~~~~~D~ 357 (395)
T PRK04135 305 VIEEVDALLPEIL-AL------KPDVLVITGDHSTPAV-----------------LKGHS---WHPVPLLLYSKYCRPDL 357 (395)
T ss_pred HHHHHHHHHHHHh-cC------CCcEEEEeCCCCCccc-----------------ccccC---CCCEeEEEEcCCCCCCC
Confidence 3688899888777 54 3458999999997752 11222 236999999998754 1
Q ss_pred -eeec---------cceehhhHHHHHHHHhCC
Q psy7399 80 -QVLE---------NLMHITDWLPTLYFIAGK 101 (107)
Q Consensus 80 -~~~~---------~~~~~~Di~pTil~l~gi 101 (107)
...+ ....-.|+++.++++++-
T Consensus 358 v~~F~E~~~~~G~L~~~~G~~lm~~~l~~~~~ 389 (395)
T PRK04135 358 SQRFTERECARGGLGHIPAVDLMPLALAHALR 389 (395)
T ss_pred CCccCHHHHcCCCcCcccHHHHHHHHHHhhhh
Confidence 1111 134567899999886653
No 45
>COG1785 PhoA Alkaline phosphatase [Inorganic ion transport and metabolism]
Probab=97.16 E-value=0.005 Score=45.88 Aligned_cols=38 Identities=13% Similarity=0.124 Sum_probs=30.6
Q ss_pred CCccccEEEEcCCCCCCeeeccceehhhHHHHHHHHhCCCC
Q psy7399 63 GGVRNVAALWSPLLRKGQVLENLMHITDWLPTLYFIAGKEK 103 (107)
Q Consensus 63 ~~~~vP~ii~~p~~~~~~~~~~~~~~~Di~pTil~l~gi~~ 103 (107)
.+..||+..++|+... ......+.||+-.|...++++.
T Consensus 444 tG~dVpi~A~Gpgae~---f~G~~DnTei~~~i~~al~~~~ 481 (482)
T COG1785 444 TGEDVPIFAYGPGAEN---FRGVMDNTEIFQAIAAALGLSL 481 (482)
T ss_pred cCceeeeeeecCcccc---ccccccchHHHHHHHHHhccCc
Confidence 4567999999998754 4456778999999999998764
No 46
>TIGR02335 hydr_PhnA phosphonoacetate hydrolase. This family consists of examples of phosphonoacetate hydrolase, an enzyme specific for the cleavage of the C-P bond in phosphonoacetate. Phosphonates are organic compounds with a direct C-P bond that is far less labile that the C-O-P bonds of phosphate attachment sites. Phosphonates may be degraded for phosphorus and energy by broad spectrum C-P lyase encoded by large operon or by specific enzymes for some of the more common phosphonates in nature. This family represents an enzyme from the latter category. It may be found encoded near genes for phosphonate transport and for pther specific phosphonatases.
Probab=96.85 E-value=0.0013 Score=48.18 Aligned_cols=29 Identities=17% Similarity=0.310 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCCeEEEEEcCCCCCCC
Q psy7399 2 LKSLDESVGRVIQSLEEEGLLGNSLVVFISDNGGPTV 38 (107)
Q Consensus 2 i~~~D~~ig~l~~~l~~~g~~~nTlii~tsDHG~~~~ 38 (107)
++.+|+.|++|++. +|.|++|||||+...
T Consensus 215 ~~~lD~~l~~L~~~--------~~~vvvtaDHG~~~~ 243 (408)
T TIGR02335 215 YAAMDSRFKRYHEQ--------GAIVAITADHGMNAK 243 (408)
T ss_pred HHHHHHHHHHHHHC--------CCEEEEECCCCCccC
Confidence 57899999998873 689999999999863
No 47
>smart00098 alkPPc Alkaline phosphatase homologues.
Probab=96.55 E-value=0.0037 Score=46.05 Aligned_cols=94 Identities=10% Similarity=0.061 Sum_probs=58.3
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCCeEEEEEcCCCCCCC--CCC-cc--cC-----------------CCCCCCCc------
Q psy7399 2 LKSLDESVGRVIQSLEEEGLLGNSLVVFISDNGGPTV--DSL-HF--HG-----------------NTASNWPL------ 53 (107)
Q Consensus 2 i~~~D~~ig~l~~~l~~~g~~~nTlii~tsDHG~~~~--~~~-~~--~~-----------------~~~~~~~~------ 53 (107)
+..+|+.|+..++..++ .++|+||+|+||+.... +.. +. .. ..++....
T Consensus 279 ~~~fd~AV~~a~~~~~~---~~dTLiiVTADH~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~ 355 (419)
T smart00098 279 TVDFDQAIQAALEFAKK---EDETLVIVTADHSHVGTFGGYSLRGSDIFGLAPSLDADRKPYTLAYKNGPGYVVKDSNGI 355 (419)
T ss_pred HHHHHHHHHHHHHHhhC---CCCcEEEEEecCCCcccccccCCCCCccccccccccCCCCHHHHHHhcCCCcchhhhccc
Confidence 35789999999999987 57999999999986531 100 00 00 00110000
Q ss_pred --------------ccc----cCCccCCCccccEEEEcCCCCCCeeeccceehhhHHHHHHHHhCC
Q psy7399 54 --------------RGT----KYSFHEGGVRNVAALWSPLLRKGQVLENLMHITDWLPTLYFIAGK 101 (107)
Q Consensus 54 --------------~~~----~~~~~~~~~~vP~ii~~p~~~~~~~~~~~~~~~Di~pTil~l~gi 101 (107)
... .......+.-||+..++|+... ......+.||+..|...+++
T Consensus 356 ~~~~t~~~~~~~~~~~~~~~~~~~~~HtG~DV~v~A~GP~a~~---f~G~~ent~i~~~m~~a~~~ 418 (419)
T smart00098 356 RPNVTKAEIGSPEYRAQTAVPLDSETHTGEDVAVFAYGPHAHL---FRGVQEQTYIAHVMAYALCL 418 (419)
T ss_pred cCCCCHHHhhccccccccccccccccccCcceEEEecCCcccc---CcccccchhHHHHHHHHhcC
Confidence 000 0011134567899999998543 34567788999999988876
No 48
>PF00245 Alk_phosphatase: Alkaline phosphatase; InterPro: IPR001952 This entry represents alkaline phosphatases (3.1.3.1 from EC) (ALP), which act as non-specific phosphomonoesterases to hydrolyse phosphate esters, optimally at high pH. The reaction mechanism involves the attack of a serine alkoxide on a phosphorus of the substrate to form a transient covalent enzyme-phosphate complex, followed by the hydrolysis of the serine phosphate. Alkaline phosphatases are found in all kingdoms of life, with the exception of some plants. Alkaline phosphatases are metalloenzymes that exist as a dimer, each monomer binding metal ions. The metal ions they carry can differ, although zinc and magnesium are the most common. For example, Escherichia coli alkaline phosphatase (encoded by phoA) requires the presence of two zinc ions bound at the M1 and M2 metal sites, and one magnesium ion bound at the M3 site []. However, alkaline phosphatases from Thermotoga maritima and Bacillus subtilis require cobalt for maximal activity []. In mammals, there are four alkaline phosphatase isozymes: placental, placental-like (germ cell), intestinal and tissue-nonspecific (liver/bone/kidney). All four isozymes are anchored to the outer surface of the plasma membrane by a covalently attached glycosylphosphatidylinositol (GPI) anchor []. Human alkaline phosphatases have four metal binding sites: two for zinc, one for magnesium, and one for calcium ion. Placental alkaline phosphatase (ALPP or PLAP) is highly polymorphic, with at least three common alleles []. Its activity is down-regulated by a number of effectors such as l-phenylalanine, 5'-AMP, and by p-nitrophenyl-phosphonate (PNPPate) []. The placental-like isozyme (ALPPL or PLAP-like) is elevated in germ cell tumours. The intestinal isozyme (ALPI or IAP) has the ability to detoxify lipopolysaccharide and prevent bacterial invasion across the gut mucosal barrier []. The tissue-nonspecific isozyme (ALPL) is, and may play a role in skeletal mineralisation. Defects in ALPL are a cause of hypophosphatasia, including infantile-type (OMIM:241500), childhood-type (OMIM:241510) and adult-type (OMIM:146300). Hhypophosphatasia is an inherited metabolic bone disease characterised by defective skeletal mineralisation []. This entry also contains the related enzyme streptomycin-6-phosphate phosphatase (3.1.3.39 from EC) (encoded by strK) from Streptomyces species. This enzyme is involved in the synthesis of the antibiotic streptomycin, specifically cleaving both streptomycin-6-phosphate and, more slowly, streptomycin-3-phosphate [].; GO: 0016791 phosphatase activity, 0008152 metabolic process; PDB: 1AJD_B 1ALH_B 2ANH_B 3BDF_A 1ELZ_B 1ELX_B 1B8J_B 2GA3_A 1ANJ_B 1Y6V_B ....
Probab=96.52 E-value=0.0043 Score=45.71 Aligned_cols=94 Identities=11% Similarity=0.122 Sum_probs=56.9
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCCeEEEEEcCCCCCCC--CCCccc---C---------C----------CCCCCCccc--
Q psy7399 2 LKSLDESVGRVIQSLEEEGLLGNSLVVFISDNGGPTV--DSLHFH---G---------N----------TASNWPLRG-- 55 (107)
Q Consensus 2 i~~~D~~ig~l~~~l~~~g~~~nTlii~tsDHG~~~~--~~~~~~---~---------~----------~~~~~~~~~-- 55 (107)
+..+|+.|+..++..++. +||+||+|+||+.... +..... . . .+....+..
T Consensus 282 ~~~fD~AV~~a~~~~~~~---~~TLiIVTADHetg~~~~~~~~~~~~~~~l~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 358 (421)
T PF00245_consen 282 TLEFDDAVKVALDFAEKD---DDTLIIVTADHETGLTIGGYPDYGWDIEGLANQKASSDGLPYTILSYANGPGYNVEDGT 358 (421)
T ss_dssp HHHHHHHHHHHHHHHHHC---SSEEEEEEESSEESEEEBSCCBTTSBTCSCCCCES-TTCCCCHHCEESSCCHHHHHCCC
T ss_pred HHHHHHHHHHHHHHhccC---CCeEEEEEecccCccccCCcccCCCChhhhhhhhhhhhhhhhhhhhhccchhhhhhccc
Confidence 357899999999999854 8999999999987621 100000 0 0 000000000
Q ss_pred --------------------ccCCccCCCccccEEEEcCCCCCCeeeccceehhhHHHHHHHHhCC
Q psy7399 56 --------------------TKYSFHEGGVRNVAALWSPLLRKGQVLENLMHITDWLPTLYFIAGK 101 (107)
Q Consensus 56 --------------------~~~~~~~~~~~vP~ii~~p~~~~~~~~~~~~~~~Di~pTil~l~gi 101 (107)
...+.-..+.-||+..++|+... ......++||+-.|..++|+
T Consensus 359 ~~~~~~~~~~~~~~~~~a~vgwtt~~HTg~dV~v~A~Gp~a~~---f~G~~dNT~I~~~m~~algl 421 (421)
T PF00245_consen 359 RPDVNLSDAIGPILSQRAGVGWTTGGHTGEDVPVYAYGPGAEL---FRGVYDNTDIAKKMAEALGL 421 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHTCB-SSSSEE-S-EEEEEESTTGGG---GSSEEETTHHHHHHHHHHT-
T ss_pred ccccchhhhhccceecccccCCcCCCCCCcceeEEEECCCccc---CCCceehHHHHHHHHHHhCc
Confidence 00011123467999999998653 34557788999999999885
No 49
>PF11658 DUF3260: Protein of unknown function (DUF3260); InterPro: IPR017744 This protein was identified by the partial phylogenetic profiling algorithm [] as part of the system for cellulose biosynthesis in bacteria, and in fact is found in cellulose biosynthesis gene regions. The protein was designated YhjU in Salmonella enteritidis, where disruption of its gene disrupts cellulose biosynthesis and biofilm formation [].
Probab=95.10 E-value=0.31 Score=36.83 Aligned_cols=84 Identities=10% Similarity=0.088 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHhCCCCCeEEEEEcCCCCCCCCCCcccCCCCCCCCcccccCCccCCCccccEEEEcCCC--CC---Cee
Q psy7399 7 ESVGRVIQSLEEEGLLGNSLVVFISDNGGPTVDSLHFHGNTASNWPLRGTKYSFHEGGVRNVAALWSPLL--RK---GQV 81 (107)
Q Consensus 7 ~~ig~l~~~l~~~g~~~nTlii~tsDHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vP~ii~~p~~--~~---~~~ 81 (107)
..+.+|++.|+++| .+.+||++-.||....+ ..-.+-|...-....-+|||.-|+.=|. .. +.+
T Consensus 383 ddl~~F~~~Le~Sg--R~v~vv~VPEHGAAlrG---------Dk~QiaGLReIPsP~IthvPVgiK~iG~~~~~~g~~~~ 451 (518)
T PF11658_consen 383 DDLDRFFDELEKSG--RKVMVVVVPEHGAALRG---------DKMQIAGLREIPSPSITHVPVGIKFIGMKAPHQGSPVH 451 (518)
T ss_pred HHHHHHHHHHHHcC--CcEEEEEecCccccccc---------cchhhccccCCCCCcceecceEEEEeccCCCCCCCCeE
Confidence 45789999999987 58999999999998854 1111222333444566788987765443 22 568
Q ss_pred eccceehhhHHHHHHHHhCC
Q psy7399 82 LENLMHITDWLPTLYFIAGK 101 (107)
Q Consensus 82 ~~~~~~~~Di~pTil~l~gi 101 (107)
++++.|..=|.--+..++.-
T Consensus 452 I~~psSYLAlSeLvsr~l~~ 471 (518)
T PF11658_consen 452 IDQPSSYLALSELVSRLLDG 471 (518)
T ss_pred ECCCchHHHHHHHHHHHhcC
Confidence 88999988888777776543
No 50
>PF08665 PglZ: PglZ domain; InterPro: IPR013973 This entry is a member of the Alkaline phosphatase clan.
Probab=94.97 E-value=0.05 Score=35.44 Aligned_cols=26 Identities=31% Similarity=0.396 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhCCCCCeEEEEEcCCCCCC
Q psy7399 8 SVGRVIQSLEEEGLLGNSLVVFISDNGGPT 37 (107)
Q Consensus 8 ~ig~l~~~l~~~g~~~nTlii~tsDHG~~~ 37 (107)
.+.++++.|.+.| +-|++|||||...
T Consensus 151 ~L~~li~~l~~~~----~~V~ITsDHG~v~ 176 (181)
T PF08665_consen 151 ELRSLIKELRNAG----RRVVITSDHGFVY 176 (181)
T ss_pred HHHHHHHHHHhcC----ceEEEECCCCCEE
Confidence 4556666666663 5699999999875
No 51
>TIGR03368 cellulose_yhjU cellulose synthase operon protein YhjU. This protein was identified by the partial phylogenetic profiling algorithm (PubMed:16930487) as part of the system for cellulose biosynthesis in bacteria, and in fact is found in cellulose biosynthesis gene regions. The protein was designated YhjU in Salmonella enteritidis, where disruption of its gene disrupts cellulose biosynthesis and biofilm formation (PubMed:11929533).
Probab=94.82 E-value=0.37 Score=36.34 Aligned_cols=83 Identities=10% Similarity=0.078 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHhCCCCCeEEEEEcCCCCCCCCCCcccCCCCCCCCcccccCCccCCCccccEEEEc--CCCC---CCee
Q psy7399 7 ESVGRVIQSLEEEGLLGNSLVVFISDNGGPTVDSLHFHGNTASNWPLRGTKYSFHEGGVRNVAALWS--PLLR---KGQV 81 (107)
Q Consensus 7 ~~ig~l~~~l~~~g~~~nTlii~tsDHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vP~ii~~--p~~~---~~~~ 81 (107)
..+.+|++.|++.| .+.+||++-.||....++ ...+-|...-....-+|||.=|+. .+.. ...+
T Consensus 380 ddld~F~~~le~Sg--R~vvVv~VPEHGAAlrGD---------k~QisGLREIPsP~IthvPVGik~iG~~~~~~g~~~~ 448 (518)
T TIGR03368 380 DDLDRFFDELEKSG--RKVVVVLVPEHGAALRGD---------KMQISGLREIPSPSITHVPVGVKFFGLGAPRRGATVT 448 (518)
T ss_pred HHHHHHHHHHHHcC--CcEEEEEecCcchhcccc---------hhhhccccCCCCCcccccceEEEEeccCCCCCCCCeE
Confidence 45788999999987 589999999999988541 111222333334455788874433 2222 2567
Q ss_pred eccceehhhHHHHHHHHhC
Q psy7399 82 LENLMHITDWLPTLYFIAG 100 (107)
Q Consensus 82 ~~~~~~~~Di~pTil~l~g 100 (107)
++++.|..=+.--+..++.
T Consensus 449 I~~psSyLAlSeLvsr~v~ 467 (518)
T TIGR03368 449 ITAPSSYLALSELVSRLVA 467 (518)
T ss_pred ECCCchHHHHHHHHHHHhc
Confidence 8899998888777776554
No 52
>COG3379 Uncharacterized conserved protein [Function unknown]
Probab=94.11 E-value=0.12 Score=38.00 Aligned_cols=36 Identities=22% Similarity=0.385 Sum_probs=26.3
Q ss_pred EEEcCCCCCCeeeccceehhhHHHHHHHHhCCCCCCC
Q psy7399 70 ALWSPLLRKGQVLENLMHITDWLPTLYFIAGKEKNID 106 (107)
Q Consensus 70 ii~~p~~~~~~~~~~~~~~~Di~pTil~l~gi~~~~~ 106 (107)
-+.+|.++.+. ....++..||+||||.|.|++.|.+
T Consensus 424 ~~~~~~~~~~~-k~~s~~IyDvaPTIL~L~gi~~~~~ 459 (471)
T COG3379 424 DINGPIIKDGK-KQSSVSIYDVAPTILKLYGINCPSD 459 (471)
T ss_pred cccccchhccc-cccceeeEeechHHHHHhCCCCCcc
Confidence 34555555432 3456889999999999999998764
No 53
>COG4102 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.10 E-value=1.5 Score=31.92 Aligned_cols=34 Identities=15% Similarity=0.103 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHhC-CCCCeEEEEEcCCCCCC
Q psy7399 4 SLDESVGRVIQSLEEEG-LLGNSLVVFISDNGGPT 37 (107)
Q Consensus 4 ~~D~~ig~l~~~l~~~g-~~~nTlii~tsDHG~~~ 37 (107)
.++..+..|-..+.+.| .|++|+|+..||.|...
T Consensus 294 ql~~~da~l~a~~t~lG~~w~dt~i~t~tEFgRta 328 (418)
T COG4102 294 QLGGLDAALDAFETELGARWKDTVIVTATEFGRTA 328 (418)
T ss_pred HhcchHHHHHHHHhhccccccceEEEEeeccccce
Confidence 34445555555666778 89999999999999876
No 54
>TIGR02687 conserved hypothetical protein TIGR02687. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 880 amino acids in length. This protein is repeatedly found upstream of another uncharacterized protein of about 470 amino acids in length, modeled by TIGR02688.
Probab=89.99 E-value=0.37 Score=38.73 Aligned_cols=15 Identities=13% Similarity=0.164 Sum_probs=12.5
Q ss_pred CeEEEEEcCCCCCCC
Q psy7399 24 NSLVVFISDNGGPTV 38 (107)
Q Consensus 24 nTlii~tsDHG~~~~ 38 (107)
-+.|++|+|||....
T Consensus 617 ~~~i~iTADHGfi~~ 631 (844)
T TIGR02687 617 GTNIIVTADHGFLYQ 631 (844)
T ss_pred CcEEEEECCCccccc
Confidence 358999999998764
No 55
>COG3379 Uncharacterized conserved protein [Function unknown]
Probab=88.69 E-value=0.55 Score=34.75 Aligned_cols=31 Identities=16% Similarity=0.359 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCeEEEEEcCCCCCC
Q psy7399 3 KSLDESVGRVIQSLEEEGLLGNSLVVFISDNGGPT 37 (107)
Q Consensus 3 ~~~D~~ig~l~~~l~~~g~~~nTlii~tsDHG~~~ 37 (107)
+-+|+.||++.+.+. +++|.+++.||||...
T Consensus 236 ~LvD~~IG~~~~~i~----~~e~~l~vvSDHGf~s 266 (471)
T COG3379 236 SLVDKYIGLKLEIIG----FEETYLTVVSDHGFKS 266 (471)
T ss_pred HHHHHHHHHHHHhcc----ccceEEEEEecccccc
Confidence 357899999988864 4679999999999875
No 56
>PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana. The function of this family is unknown.
Probab=83.29 E-value=1.3 Score=28.65 Aligned_cols=31 Identities=19% Similarity=0.335 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHhCCCCCeEEEEEcCCCCCC
Q psy7399 4 SLDESVGRVIQSLEEEGLLGNSLVVFISDNGGPT 37 (107)
Q Consensus 4 ~~D~~ig~l~~~l~~~g~~~nTlii~tsDHG~~~ 37 (107)
..|..|.+++..+.+.+ ..+.|+||||....
T Consensus 78 tAD~~Ie~~v~~~~~~~---~~v~VVTSD~~iq~ 108 (166)
T PF05991_consen 78 TADDYIERLVRELKNRP---RQVTVVTSDREIQR 108 (166)
T ss_pred CHHHHHHHHHHHhccCC---CeEEEEeCCHHHHH
Confidence 46899999999987654 68999999997643
No 57
>KOG4126|consensus
Probab=81.58 E-value=2.4 Score=32.25 Aligned_cols=20 Identities=20% Similarity=0.195 Sum_probs=15.6
Q ss_pred HhCCCCCeEEEEEcCCCCCC
Q psy7399 18 EEGLLGNSLVVFISDNGGPT 37 (107)
Q Consensus 18 ~~g~~~nTlii~tsDHG~~~ 37 (107)
+.-.-++|+||+||||....
T Consensus 382 ~~t~~~dTLivvTaDHsh~~ 401 (529)
T KOG4126|consen 382 ELTSEEDTLIVVTADHSHTF 401 (529)
T ss_pred HhcCccCCEEEEecccccce
Confidence 33445789999999998765
No 58
>PRK13366 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=78.51 E-value=3.9 Score=28.80 Aligned_cols=33 Identities=12% Similarity=0.038 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCeEEEEEcCCCCCC
Q psy7399 3 KSLDESVGRVIQSLEEEGLLGNSLVVFISDNGGPT 37 (107)
Q Consensus 3 ~~~D~~ig~l~~~l~~~g~~~nTlii~tsDHG~~~ 37 (107)
+.+.+.+.++-+++++. .-+|+|||.+||...+
T Consensus 31 ~~~~~a~~~i~~~i~~~--~PDvvVii~~dH~~~f 63 (284)
T PRK13366 31 QPVFKGYEFSKQWEKEE--KPDVIFLVYNDHATAF 63 (284)
T ss_pred HHHHHHHHHHHHHHHHh--CCCEEEEEcCCcHHhh
Confidence 34556667777777665 4579999999998765
No 59
>cd07364 PCA_45_Dioxygenase_B Subunit B of the Class III extradiol dioxygenase, Protocatechuate 4,5-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of protocatechuate. Protocatechuate 4,5-dioxygenase (LigAB) catalyzes the oxidization and subsequent ring-opening of protocatechuate (or 3,4-dihydroxybenzoic acid, PCA), an intermediate in the breakdown of lignin and other compounds. Protocatechuate 4,5-dioxygenase is an aromatic ring opening dioxygenase belonging to the class III extradiol enzyme family, a group of enyzmes that cleaves aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon using a non-heme Fe(II). LigAB is composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. The B subunit (LigB) is the catalytic subunit of LigAB.
Probab=78.22 E-value=3.6 Score=28.84 Aligned_cols=33 Identities=6% Similarity=0.050 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHhCCCCCeEEEEEcCCCCCCC
Q psy7399 4 SLDESVGRVIQSLEEEGLLGNSLVVFISDNGGPTV 38 (107)
Q Consensus 4 ~~D~~ig~l~~~l~~~g~~~nTlii~tsDHG~~~~ 38 (107)
.+.+.+.++-+++++. .-+|+|||.+||...+.
T Consensus 32 ~~~~a~~~~~~~~~~~--~pD~vVvi~~dH~~~f~ 64 (277)
T cd07364 32 PLFKGYQPARDWIKKN--KPDVAIIVYNDHASAFD 64 (277)
T ss_pred HHHHHHHHHHHHHHHh--CCCEEEEEcCchHHhhc
Confidence 3455667777777665 45799999999998763
No 60
>cd07950 Gallate_Doxase_N The N-terminal domain of the Class III extradiol dioxygenase, Gallate Dioxygenase, which catalyzes the oxidization and subsequent ring-opening of gallate. Gallate Dioxygenase catalyzes the oxidization and subsequent ring-opening of gallate, an intermediate in the degradation of the aromatic compound, syringate. The reaction product of gallate dioxygenase is 4-oxalomesaconate. The amino acid sequence of the N-terminal and C-terminal regions of gallate dioxygenase exhibits homology with the sequence of PCA 4,5-dioxygenase B (catalytic) and A subunits, respectively. The enzyme is estimated to be a homodimer according to the Escherichia coli enzyme. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. In this subfamily, the subunits A and B are fused to make a single polypeptide chain. The dimer interface for this subfamily may resemble the tetramer interface of classical LigAB en
Probab=76.49 E-value=3.8 Score=28.70 Aligned_cols=32 Identities=19% Similarity=0.140 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHhCCCCCeEEEEEcCCCCCC
Q psy7399 4 SLDESVGRVIQSLEEEGLLGNSLVVFISDNGGPT 37 (107)
Q Consensus 4 ~~D~~ig~l~~~l~~~g~~~nTlii~tsDHG~~~ 37 (107)
.+.+.+.++-+++++.+ -+|+|||++||+..+
T Consensus 32 ~~~~a~~~~~~~i~~~~--PD~iVvi~~dH~~~f 63 (277)
T cd07950 32 PIFDGYEPVKQWLAEQK--PDVLFMVYNDHVTSF 63 (277)
T ss_pred HHHHHHHHHHHHHHHhC--CCEEEEEcCcHHHHh
Confidence 45566777777777653 579999999999876
No 61
>PRK13365 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=75.37 E-value=4.6 Score=28.34 Aligned_cols=32 Identities=25% Similarity=0.247 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHhCCCCCeEEEEEcCCCCCC
Q psy7399 4 SLDESVGRVIQSLEEEGLLGNSLVVFISDNGGPT 37 (107)
Q Consensus 4 ~~D~~ig~l~~~l~~~g~~~nTlii~tsDHG~~~ 37 (107)
.+.+.+.++-+++++. .-+|+|||.+||+..+
T Consensus 32 ~~~~a~~~i~~~v~~~--~PDviVvi~sdH~~~f 63 (279)
T PRK13365 32 PLFDGYEPVAAWLAEQ--KADVLVFFYNDHCTTF 63 (279)
T ss_pred HHHHHHHHHHHHHHHh--CCCEEEEEcCchHHHh
Confidence 4556677777777765 3579999999999865
No 62
>PRK13364 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=74.85 E-value=5.2 Score=28.08 Aligned_cols=32 Identities=25% Similarity=0.212 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHhCCCCCeEEEEEcCCCCCC
Q psy7399 4 SLDESVGRVIQSLEEEGLLGNSLVVFISDNGGPT 37 (107)
Q Consensus 4 ~~D~~ig~l~~~l~~~g~~~nTlii~tsDHG~~~ 37 (107)
.+.+.+.++-+++++. .-+++|||+.||+..+
T Consensus 32 ~v~~a~~~~~~~v~~~--~PDvvVvis~dH~~~f 63 (278)
T PRK13364 32 PFFDGFPPVREWLEKV--KPDVAVVFYNDHGLNF 63 (278)
T ss_pred HHHHHHHHHHHHHHHh--CCCEEEEECCchHhhh
Confidence 4566777777777775 4578999888999884
No 63
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=73.57 E-value=5.6 Score=24.73 Aligned_cols=26 Identities=27% Similarity=0.544 Sum_probs=21.5
Q ss_pred HHHHHHHHHhCCCCCeEEEEEcCCCCCC
Q psy7399 10 GRVIQSLEEEGLLGNSLVVFISDNGGPT 37 (107)
Q Consensus 10 g~l~~~l~~~g~~~nTlii~tsDHG~~~ 37 (107)
.++++.|++.+. |+++++..+||...
T Consensus 3 ~~~~~~lk~~~v--~si~i~a~~h~g~a 28 (132)
T PF14871_consen 3 EQFVDTLKEAHV--NSITIFAKCHGGYA 28 (132)
T ss_pred HHHHHHHHHhCC--CEEEEEcccccEEE
Confidence 578899999876 79999999988643
No 64
>PF08747 DUF1788: Domain of unknown function (DUF1788); InterPro: IPR014858 This entry represents a putative uncharacterised protein of length around 200 amino acids.
Probab=72.90 E-value=4.4 Score=25.07 Aligned_cols=54 Identities=11% Similarity=0.086 Sum_probs=29.4
Q ss_pred HHHHHHHHHh-CCCCCeEEEEEcCCCCCCCCCCcccCCCCCCCCcccccC--CccCCCc-cccEEEEcCCCCC
Q psy7399 10 GRVIQSLEEE-GLLGNSLVVFISDNGGPTVDSLHFHGNTASNWPLRGTKY--SFHEGGV-RNVAALWSPLLRK 78 (107)
Q Consensus 10 g~l~~~l~~~-g~~~nTlii~tsDHG~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~vP~ii~~p~~~~ 78 (107)
.++.+++++. ...++++|++|+ =|... |+...+. ...+..+ ++|+++..||...
T Consensus 47 ~~i~~~i~~~~~~~~~~vv~ltG-vG~l~--------------P~~R~h~lL~~l~~~~~~~plv~FyPG~y~ 104 (126)
T PF08747_consen 47 EKIAEYIQEELEDDDRDVVFLTG-VGSLF--------------PFIRSHELLNNLQPKFGNVPLVVFYPGEYD 104 (126)
T ss_pred HHHHHHHHHhccCCCCcEEEEeC-cchhc--------------chhhHHHHHHHHHHHhcCCeEEEECCceec
Confidence 3455566554 455677666555 34332 3321111 1122223 8999999999765
No 65
>COG0056 AtpA F0F1-type ATP synthase, alpha subunit [Energy production and conversion]
Probab=72.19 E-value=5.4 Score=30.16 Aligned_cols=25 Identities=36% Similarity=0.589 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHhCCCCCeEEEEEc
Q psy7399 7 ESVGRVIQSLEEEGLLGNSLVVFIS 31 (107)
Q Consensus 7 ~~ig~l~~~l~~~g~~~nTlii~ts 31 (107)
..|.++++.|++.|.+++|+||-.|
T Consensus 203 stva~vv~tL~e~gAmdyTiVV~As 227 (504)
T COG0056 203 STVANVVRTLEEHGAMDYTIVVAAS 227 (504)
T ss_pred HHHHHHHHHHHHcCCccceEEEEec
Confidence 4578999999999999999999887
No 66
>cd07369 PydA_Rs_like PydA is a Class III Extradiol ring-cleavage dioxygenase required for the degradation of 3-hydroxy-4-pyridone (HP). This subfamily is composed of Rhizobium sp. PydA and similar proteins. PydA is required for the degradation of 3-hydroxy-4-pyridone (HP), an intermediate in the Leucaena toxin mimosine degradation pathway. It is a member of the class III extradiol dioxygenase family, a group of enzymes that use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=71.65 E-value=9.2 Score=27.58 Aligned_cols=32 Identities=13% Similarity=0.218 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHhCCCCCeEEEEEcCCCCCC
Q psy7399 4 SLDESVGRVIQSLEEEGLLGNSLVVFISDNGGPT 37 (107)
Q Consensus 4 ~~D~~ig~l~~~l~~~g~~~nTlii~tsDHG~~~ 37 (107)
.+-+.+.++-+++++. .-+|+|||.+||...+
T Consensus 30 ~~~~a~~~l~~~v~~~--~PD~iVV~~sdH~~~~ 61 (329)
T cd07369 30 RTEEATLKLGRTLTAA--RPDVIIAFLDDHFENH 61 (329)
T ss_pred HHHHHHHHHHHHHHHh--CCCEEEEEcCCchhhh
Confidence 4455666777777664 3479999999998733
No 67
>cd07949 PCA_45_Doxase_B_like_1 The B subunit of unknown Class III extradiol dioxygenases with similarity to Protocatechuate 4,5-dioxygenase. This subfamily is composed of proteins of unknown function with similarity to the B subunit of Protocatechuate 4,5-dioxygenase (LigAB). LigAB belongs to the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Dioxygenases play key roles in the degradation of aromatic compounds. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=71.18 E-value=6.4 Score=27.58 Aligned_cols=30 Identities=27% Similarity=0.214 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHhCCCCCeEEEEEcCCCCCC
Q psy7399 6 DESVGRVIQSLEEEGLLGNSLVVFISDNGGPT 37 (107)
Q Consensus 6 D~~ig~l~~~l~~~g~~~nTlii~tsDHG~~~ 37 (107)
-+.+.++-+++++. .-+|+|||++||+..+
T Consensus 34 ~~a~~~~~~~v~~~--~PD~iVvis~dH~~~f 63 (276)
T cd07949 34 FDGFPPVHDWLEKA--KPDVAVVFYNDHGLNF 63 (276)
T ss_pred HHHHHHHHHHHHHc--CCCEEEEECCcHHhhh
Confidence 45667777777764 4578998888997765
No 68
>PHA02754 hypothetical protein; Provisional
Probab=69.15 E-value=15 Score=19.68 Aligned_cols=17 Identities=24% Similarity=0.436 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHhCCC
Q psy7399 6 DESVGRVIQSLEEEGLL 22 (107)
Q Consensus 6 D~~ig~l~~~l~~~g~~ 22 (107)
-+...++-+.|.++|++
T Consensus 17 ke~MRelkD~LSe~GiY 33 (67)
T PHA02754 17 KEAMRELKDILSEAGIY 33 (67)
T ss_pred HHHHHHHHHHHhhCceE
Confidence 34455556666677876
No 69
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=67.60 E-value=9 Score=27.09 Aligned_cols=28 Identities=29% Similarity=0.375 Sum_probs=24.1
Q ss_pred HHHHHHHHHhCCCCCeEEEEEcCCCCCC
Q psy7399 10 GRVIQSLEEEGLLGNSLVVFISDNGGPT 37 (107)
Q Consensus 10 g~l~~~l~~~g~~~nTlii~tsDHG~~~ 37 (107)
++|-+.+.+.|+.+++.||++.|.|...
T Consensus 76 e~fa~~~~~~GI~~d~tVVvYdd~~~~~ 103 (285)
T COG2897 76 EQFAKLLGELGIRNDDTVVVYDDGGGFF 103 (285)
T ss_pred HHHHHHHHHcCCCCCCEEEEECCCCCee
Confidence 5677888999999999999999988765
No 70
>cd07368 PhnC_Bs_like PhnC is a Class III Extradiol ring-cleavage dioxygenase involved in the polycyclic aromatic hydrocarbon (PAH) catabolic pathway. This subfamily is composed of Burkholderia sp. PhnC and similar poteins. PhnC is one of nine protein products encoded by the phn locus. These proteins are involved in the polycyclic aromatic hydrocarbon (PAH) catabolic pathway. PhnC is a member of the class III extradiol dioxygenase family, a group os enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=66.27 E-value=11 Score=26.44 Aligned_cols=31 Identities=16% Similarity=-0.081 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHhCCCCCeEEEEEcCCCCCCC
Q psy7399 6 DESVGRVIQSLEEEGLLGNSLVVFISDNGGPTV 38 (107)
Q Consensus 6 D~~ig~l~~~l~~~g~~~nTlii~tsDHG~~~~ 38 (107)
-+.+.++-+++++.+ -+|+|||+.||...+.
T Consensus 32 ~~a~~~~~~~v~~~~--pD~ivvi~~dH~~~f~ 62 (277)
T cd07368 32 WHAYAICAERLAALQ--VTSVVVIGDDHYTLFG 62 (277)
T ss_pred HHHHHHHHHHHHHcC--CCEEEEEcCchHhhhh
Confidence 345566666666543 4799999999998763
No 71
>cd07366 3MGA_Dioxygenase Subunit B of the Class III Extradiol ring-cleavage dioxygenase, 3-O-Methylgallate Dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 3-O-Methylgallate. 3-O-Methylgallate Dioxygenase catalyzes the oxidization and subsequent ring-opening of 3-O-Methylgallate (3MGA) between carbons 2 and 3. 3-O-Methylgallate Dioxygenase is a key enzyme in the syringate degradation pathway, in which the syringate is first converted to 3-O-Methylgallate by O-demethylase. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which uses a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=64.88 E-value=12 Score=26.90 Aligned_cols=32 Identities=9% Similarity=0.045 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHhCCCCCeEEEEEcCCCCCC
Q psy7399 4 SLDESVGRVIQSLEEEGLLGNSLVVFISDNGGPT 37 (107)
Q Consensus 4 ~~D~~ig~l~~~l~~~g~~~nTlii~tsDHG~~~ 37 (107)
.+.+.+.++-+.+++. .-+++|||+.||...+
T Consensus 70 ~~~~a~~~~~~~i~~~--~PDvlVIispDH~~~f 101 (328)
T cd07366 70 RCQAALDRLADFIRAA--RIDVAVIVGDDQKELF 101 (328)
T ss_pred HHHHHHHHHHHHHHHh--CCCEEEEEcCccHhhh
Confidence 3445667777777765 3479999999999765
No 72
>PF12646 DUF3783: Domain of unknown function (DUF3783); InterPro: IPR016621 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=64.64 E-value=19 Score=18.92 Aligned_cols=29 Identities=14% Similarity=0.338 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHhCCCCCeEEEEEcCCC
Q psy7399 5 LDESVGRVIQSLEEEGLLGNSLVVFISDNG 34 (107)
Q Consensus 5 ~D~~ig~l~~~l~~~g~~~nTlii~tsDHG 34 (107)
.++.+.++++.+|+.|+ ...+..+++.|-
T Consensus 10 ~~~el~~~l~~~r~~~~-~~~~kAvlT~tN 38 (58)
T PF12646_consen 10 SGEELDKFLDALRKAGI-PIPLKAVLTPTN 38 (58)
T ss_pred CHHHHHHHHHHHHHcCC-CcceEEEECCCc
Confidence 46789999999999998 667766666554
No 73
>cd07367 CarBb CarBb is the B subunit of the Class III Extradiol ring-cleavage dioxygenase, 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. CarBb is the B subunit of 2-aminophenol 1,6-dioxygenase (CarB), which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. It is a key enzyme in the carbazole degradation pathway isolated from bacterial strains with carbazole degradation ability. The enzyme is a heterotetramer composed of two A and two B subunits. CarB belongs to the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Although the enzyme was originally isolated as a meta-cleavage enzyme for 2'-aminobiphenyl-2,3-diol involved in carbazole degradation, it has also shown high specificity for 2,3-dihydroxybiphenyl.
Probab=62.66 E-value=16 Score=25.36 Aligned_cols=30 Identities=20% Similarity=0.135 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHhCCCCCeEEEEEcCCCCCC
Q psy7399 6 DESVGRVIQSLEEEGLLGNSLVVFISDNGGPT 37 (107)
Q Consensus 6 D~~ig~l~~~l~~~g~~~nTlii~tsDHG~~~ 37 (107)
-+.+.++-+++++. .-+++|||++||....
T Consensus 28 ~~al~~~~~~l~~~--~Pd~ivvis~dH~~~~ 57 (268)
T cd07367 28 VQGMAEIGRRVRES--RPDVLVVISSDHLFNI 57 (268)
T ss_pred HHHHHHHHHHHHHc--CCCEEEEEeCchhhhc
Confidence 33444555555442 3589999999998764
No 74
>PF14556 AF2331-like: AF2331-like; PDB: 2FDO_A.
Probab=62.19 E-value=9.3 Score=21.88 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=13.8
Q ss_pred HHHHHHHHhCCCCCeEEEEEcCCC
Q psy7399 11 RVIQSLEEEGLLGNSLVVFISDNG 34 (107)
Q Consensus 11 ~l~~~l~~~g~~~nTlii~tsDHG 34 (107)
-+++.|++ ++.+++++|+.||--
T Consensus 10 sFlkFlek-nl~ed~vvvVSSDVt 32 (93)
T PF14556_consen 10 SFLKFLEK-NLEEDKVVVVSSDVT 32 (93)
T ss_dssp HHHHHHHC-C--TTEEEEEE--EE
T ss_pred HHHHHHHh-ccCCCeEEEEeccch
Confidence 45666664 577999999999854
No 75
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=62.08 E-value=14 Score=24.88 Aligned_cols=26 Identities=23% Similarity=0.401 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHhCCCCCeEEEEEcCC
Q psy7399 7 ESVGRVIQSLEEEGLLGNSLVVFISDN 33 (107)
Q Consensus 7 ~~ig~l~~~l~~~g~~~nTlii~tsDH 33 (107)
..+.++.+.+....+ .+|.||+.||-
T Consensus 134 ~aL~~~~~~~~~~~~-~~t~vvIiSDg 159 (222)
T PF05762_consen 134 QALREFLRQYARPDL-RRTTVVIISDG 159 (222)
T ss_pred HHHHHHHHHhhcccc-cCcEEEEEecc
Confidence 455666666655556 79999999994
No 76
>TIGR02049 gshA_ferroox glutamate--cysteine ligase, T. ferrooxidans family. This family consists of a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.
Probab=60.29 E-value=27 Score=25.86 Aligned_cols=35 Identities=20% Similarity=0.347 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCeEEEEEcCCCCCC
Q psy7399 3 KSLDESVGRVIQSLEEEGLLGNSLVVFISDNGGPT 37 (107)
Q Consensus 3 ~~~D~~ig~l~~~l~~~g~~~nTlii~tsDHG~~~ 37 (107)
+.+|..+.++-++.++-|+.++-.||+=+|.|...
T Consensus 236 ~~Vd~~L~kir~KY~eYgI~e~PfViVKADaGTYG 270 (403)
T TIGR02049 236 TAVDQVLSKTQKKYEEYGIHTQPYVIVKADAGTYG 270 (403)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCCCC
Confidence 56899999999999999999999999999999864
No 77
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=58.49 E-value=12 Score=24.06 Aligned_cols=25 Identities=24% Similarity=0.518 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhCCCCCeEEEEEcCCCC
Q psy7399 8 SVGRVIQSLEEEGLLGNSLVVFISDNGG 35 (107)
Q Consensus 8 ~ig~l~~~l~~~g~~~nTlii~tsDHG~ 35 (107)
.+..+++.|++.|+ .+.++|+|+-.
T Consensus 131 ~~~~~l~~L~~~Gi---~~~i~TGD~~~ 155 (215)
T PF00702_consen 131 GAKEALQELKEAGI---KVAILTGDNES 155 (215)
T ss_dssp THHHHHHHHHHTTE---EEEEEESSEHH
T ss_pred hhhhhhhhhhccCc---ceeeeeccccc
Confidence 35788999999987 68889999653
No 78
>COG4077 Uncharacterized protein conserved in archaea [Function unknown]
Probab=57.45 E-value=13 Score=23.33 Aligned_cols=24 Identities=29% Similarity=0.548 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCCe
Q psy7399 2 LKSLDESVGRVIQSLEEEGLLGNS 25 (107)
Q Consensus 2 i~~~D~~ig~l~~~l~~~g~~~nT 25 (107)
|..+|+++.++++.+.+..++-+|
T Consensus 79 I~e~De~vr~~vei~te~~i~~d~ 102 (156)
T COG4077 79 IKEIDEFVRRIVEILTENPIYPDT 102 (156)
T ss_pred HHHHHHHHHHHHHhhhcCCCccCc
Confidence 678999999999999988766544
No 79
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=57.42 E-value=17 Score=25.65 Aligned_cols=27 Identities=19% Similarity=0.308 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHhCCCCCeEEEEE-cCC
Q psy7399 7 ESVGRVIQSLEEEGLLGNSLVVFI-SDN 33 (107)
Q Consensus 7 ~~ig~l~~~l~~~g~~~nTlii~t-sDH 33 (107)
+.+.+|++.+++.+.+++|++|+. ||.
T Consensus 114 rev~e~~~~~~~~~~l~~tv~v~~t~~~ 141 (276)
T cd01135 114 EDARFFKDDFEETGALERVVLFLNLAND 141 (276)
T ss_pred HHHHHHHHHhhhcCCcceEEEEEecCCC
Confidence 467899999999999999988854 444
No 80
>PRK13373 putative dioxygenase; Provisional
Probab=56.41 E-value=23 Score=25.83 Aligned_cols=33 Identities=18% Similarity=0.281 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHhCCCCCeEEEEEcCCCCCCC
Q psy7399 4 SLDESVGRVIQSLEEEGLLGNSLVVFISDNGGPTV 38 (107)
Q Consensus 4 ~~D~~ig~l~~~l~~~g~~~nTlii~tsDHG~~~~ 38 (107)
.+.+.+.++-+.+++. .-+.+|||.+||...+.
T Consensus 30 ~v~~a~~~ir~~i~e~--kPDVvVv~~nDH~~~Ff 62 (344)
T PRK13373 30 RLLQAADRLGRSLDAA--RPDVIIAFLDDHFENHF 62 (344)
T ss_pred HHHHHHHHHHHHHHHh--CCCEEEEEccchhhhhc
Confidence 4456666666677664 35799999999998763
No 81
>PRK05621 F0F1 ATP synthase subunit gamma; Validated
Probab=55.89 E-value=17 Score=25.38 Aligned_cols=12 Identities=33% Similarity=0.312 Sum_probs=10.6
Q ss_pred EEEEEcCCCCCC
Q psy7399 26 LVVFISDNGGPT 37 (107)
Q Consensus 26 lii~tsDHG~~~ 37 (107)
+|+|+||+|.+.
T Consensus 77 ~ivitSd~GLCG 88 (284)
T PRK05621 77 YIVVTSDRGLCG 88 (284)
T ss_pred EEEEeCCCcccc
Confidence 799999999875
No 82
>PF02739 5_3_exonuc_N: 5'-3' exonuclease, N-terminal resolvase-like domain; InterPro: IPR020046 The N-terminal and internal 5'3'-exonuclease domains are commonly found together, and are most often associated with 5' to 3' nuclease activities. The XPG protein signatures (PDOC00658 from PROSITEDOC) are never found outside the '53EXO' domains. The latter are found in more diverse proteins [, , ]. The number of amino acids that separate the two 53EXO domains, and the presence of accompanying motifs allow the diagnosis of several protein families. In the eubacterial type A DNA-polymerases, the N-terminal and internal domains are separated by a few amino acids, usually four. The pattern DNA_POLYMERASE_A (IPR001098 from INTERPRO) is always present towards the C terminus. Several eukaryotic structure-dependent endonucleases and exonucleases have the 53EXO domains separated by 24 to 27 amino acids, and the XPG protein signatures are always present. In several proteins from herpesviridae, the two 53EXO domains are separated by 50 to 120 amino acids. These proteins are implicated in the inhibition of the expression of the host genes. Eukaryotic DNA repair proteins with 600 to 700 amino acids between the 53_EXO domains all carry the XPG protein signatures. This entry represents the N-terminal resolvase-like domain, which has a 3-layer alpha/beta/alpha core structure and contains an alpha-helical arch [, ].; GO: 0003677 DNA binding, 0008409 5'-3' exonuclease activity; PDB: 1TAQ_A 1BGX_T 1TAU_A 1XO1_B 1EXN_A 1UT8_A 1UT5_B 3H7I_A 3H8J_A 3H8S_A ....
Probab=55.66 E-value=28 Score=22.46 Aligned_cols=30 Identities=17% Similarity=0.357 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHhCCCCCeEEEEEcCCCCC
Q psy7399 4 SLDESVGRVIQSLEEEGLLGNSLVVFISDNGGP 36 (107)
Q Consensus 4 ~~D~~ig~l~~~l~~~g~~~nTlii~tsDHG~~ 36 (107)
+.|..||.+....++.|. -++|+++|.-..
T Consensus 109 EADDvIatla~~~~~~~~---~v~IvS~DkD~~ 138 (169)
T PF02739_consen 109 EADDVIATLAKKASEEGF---EVIIVSGDKDLL 138 (169)
T ss_dssp -HHHHHHHHHHHHHHTTC---EEEEE-SSGGGG
T ss_pred cHHHHHHHHHhhhccCCC---EEEEEcCCCCHH
Confidence 579999999999998863 588899998654
No 83
>PF10673 DUF2487: Protein of unknown function (DUF2487); InterPro: IPR019615 This entry represents proteins with unknown function that appears to be restricted to Bacillus sp.
Probab=54.57 E-value=37 Score=21.51 Aligned_cols=28 Identities=21% Similarity=0.315 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHhCCCCCeEEEEEcCCCCC
Q psy7399 7 ESVGRVIQSLEEEGLLGNSLVVFISDNGGP 36 (107)
Q Consensus 7 ~~ig~l~~~l~~~g~~~nTlii~tsDHG~~ 36 (107)
..+.+.-+.|++.|. +-++++|+|+...
T Consensus 71 ~~L~~w~~~l~~~GF--khV~~lT~D~~Wk 98 (142)
T PF10673_consen 71 ERLNDWCEELKESGF--KHVFYLTSDSEWK 98 (142)
T ss_pred HHHHHHHHHHHhcCC--cEEEEEecCcccc
Confidence 456777888998886 4799999998754
No 84
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=53.09 E-value=27 Score=18.41 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhCCCCCeEEEEEcCCCCCC
Q psy7399 8 SVGRVIQSLEEEGLLGNSLVVFISDNGGPT 37 (107)
Q Consensus 8 ~ig~l~~~l~~~g~~~nTlii~tsDHG~~~ 37 (107)
.+.++++++++.|+. .+..+||+...
T Consensus 16 ~~~~~~~~a~~~g~~----~v~iTDh~~~~ 41 (67)
T smart00481 16 SPEELVKRAKELGLK----AIAITDHGNLF 41 (67)
T ss_pred CHHHHHHHHHHcCCC----EEEEeeCCccc
Confidence 356889999999874 57889998543
No 85
>COG3885 Uncharacterized conserved protein [Function unknown]
Probab=51.88 E-value=45 Score=23.14 Aligned_cols=26 Identities=12% Similarity=0.373 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHhCCCCCeEEEEEcCCCCCC
Q psy7399 7 ESVGRVIQSLEEEGLLGNSLVVFISDNGGPT 37 (107)
Q Consensus 7 ~~ig~l~~~l~~~g~~~nTlii~tsDHG~~~ 37 (107)
..++++++.++ ++-.+|+.+||+...
T Consensus 151 ~~l~~~le~~~-----~ki~lIiSaD~aHth 176 (261)
T COG3885 151 DNLGKALEEYE-----RKISLIISADHAHTH 176 (261)
T ss_pred HHHHHHHHHhh-----cceEEEEeccccccc
Confidence 34566666654 457889999999875
No 86
>PF00231 ATP-synt: ATP synthase This Pfam entry corresponds to chain g; InterPro: IPR000131 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. The ATPase F1 complex gamma subunit forms the central shaft that connects the F0 rotary motor to the F1 catalytic core. The gamma subunit functions as a rotary motor inside the cylinder formed by the alpha(3)beta(3) subunits in the F1 complex []. The best-conserved region of the gamma subunit is its C terminus, which seems to be essential for assembly and catalysis. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015986 ATP synthesis coupled proton transport, 0045261 proton-transporting ATP synthase complex, catalytic core F(1); PDB: 3OFN_G 3FKS_P 3OEE_Y 2HLD_Y 3OEH_Y 2XOK_G 3ZRY_G 3OE7_P 2WPD_G 3OAA_e ....
Probab=51.83 E-value=10 Score=26.50 Aligned_cols=18 Identities=28% Similarity=0.180 Sum_probs=11.1
Q ss_pred CCCCCeEEEEEcCCCCCC
Q psy7399 20 GLLGNSLVVFISDNGGPT 37 (107)
Q Consensus 20 g~~~nTlii~tsDHG~~~ 37 (107)
.....-+|+|+||.|.+.
T Consensus 72 ~~~~~~~ivitSDrGLCG 89 (290)
T PF00231_consen 72 EVKKVLLIVITSDRGLCG 89 (290)
T ss_dssp --SCEEEEEE--STSSST
T ss_pred ccceEEEEEEecCccccc
Confidence 344567889999999875
No 87
>PRK00105 cobT nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; Reviewed
Probab=51.55 E-value=13 Score=26.92 Aligned_cols=18 Identities=28% Similarity=0.388 Sum_probs=14.6
Q ss_pred CCCCeEEEEEcCCCCCCC
Q psy7399 21 LLGNSLVVFISDNGGPTV 38 (107)
Q Consensus 21 ~~~nTlii~tsDHG~~~~ 38 (107)
+.+..++||.+|||-...
T Consensus 44 ~~~~~~~vfaaDHGv~~~ 61 (335)
T PRK00105 44 VERPAVVVFAGDHGVAEE 61 (335)
T ss_pred CCCCEEEEEeCCCCcccC
Confidence 446799999999997764
No 88
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=51.13 E-value=26 Score=24.70 Aligned_cols=25 Identities=32% Similarity=0.583 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHhCCCCCeEEEEEc
Q psy7399 7 ESVGRVIQSLEEEGLLGNSLVVFIS 31 (107)
Q Consensus 7 ~~ig~l~~~l~~~g~~~nTlii~ts 31 (107)
+.+..+++.+++.+..++|+||+.+
T Consensus 110 ~ev~e~~~~~~~~~~~~~tvvv~~t 134 (274)
T cd01132 110 STVAQVVKTLEEHGAMEYTIVVAAT 134 (274)
T ss_pred HHHHHHHHHHHhcCccceeEEEEeC
Confidence 4678899999999999999877654
No 89
>TIGR03160 cobT_DBIPRT nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase. Members of this family are nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase, an enzyme of cobalamin biosynthesis.
Probab=51.07 E-value=13 Score=26.87 Aligned_cols=19 Identities=26% Similarity=0.378 Sum_probs=15.1
Q ss_pred CCCCeEEEEEcCCCCCCCC
Q psy7399 21 LLGNSLVVFISDNGGPTVD 39 (107)
Q Consensus 21 ~~~nTlii~tsDHG~~~~~ 39 (107)
+....++||.+|||-...+
T Consensus 43 ~~~~~~~vfaaDHGv~~~g 61 (333)
T TIGR03160 43 IDRPAVVVFAGDHGVAAEG 61 (333)
T ss_pred CCCceEEEEeCCCCcccCC
Confidence 3467899999999987643
No 90
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=50.99 E-value=26 Score=24.64 Aligned_cols=25 Identities=16% Similarity=0.369 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHhCCCCCeEEEEEc
Q psy7399 7 ESVGRVIQSLEEEGLLGNSLVVFIS 31 (107)
Q Consensus 7 ~~ig~l~~~l~~~g~~~nTlii~ts 31 (107)
+.+.++++.+++.+..++|+||+.+
T Consensus 111 ~Ev~e~~~~~~~~~~~~~tvvv~~t 135 (274)
T cd01133 111 REGNDLYHEMKESGVLSKTALVYGQ 135 (274)
T ss_pred HHHHHHHHHHHhcCCcceeEEEEEC
Confidence 4678899999999999999988754
No 91
>PF12281 DUF3620: Protein of unknown function (DUF3620); InterPro: IPR022550 Proteins containing this family are found in bacteria, and are typically between 281 and 358 amino acids in length. There are two completely conserved residues (G and P) that may be functionally important.
Probab=50.77 E-value=14 Score=25.03 Aligned_cols=26 Identities=31% Similarity=0.471 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHhCCCCCeEEEEEc
Q psy7399 6 DESVGRVIQSLEEEGLLGNSLVVFIS 31 (107)
Q Consensus 6 D~~ig~l~~~l~~~g~~~nTlii~ts 31 (107)
|...+++++.|.+.|++...++++-+
T Consensus 1 ~~~~~~~l~al~~~G~~r~~~vlVGt 26 (217)
T PF12281_consen 1 DNKTGRVLRALAAAGLFRLGGVLVGT 26 (217)
T ss_pred CchHHHHHHHHHhcCccccCeEEECH
Confidence 56789999999999998877776543
No 92
>TIGR01146 ATPsyn_F1gamma ATP synthase, F1 gamma subunit. This model describes the ATP synthase gamma subunit in bacteria and its equivalents in organelles, namely, mitochondria and chloroplast. F1/F0-ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involed in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. The gamma subunit is the part of F1 cluster. Surrounding the gamma subunit in a cylinder-like structure are three alpha and three subunits in an alternating fashion. This is the central catalytic unit whose different conformations permit the binding of ADP and inorganic phosphate and release of ATP.
Probab=50.46 E-value=24 Score=24.76 Aligned_cols=12 Identities=33% Similarity=0.379 Sum_probs=10.6
Q ss_pred EEEEEcCCCCCC
Q psy7399 26 LVVFISDNGGPT 37 (107)
Q Consensus 26 lii~tsDHG~~~ 37 (107)
+|+|+||+|.+.
T Consensus 78 ~ivitSDrGLCG 89 (287)
T TIGR01146 78 ILVITSDRGLCG 89 (287)
T ss_pred EEEEeCCCCccc
Confidence 689999999875
No 93
>PF02863 Arg_repressor_C: Arginine repressor, C-terminal domain; InterPro: IPR020899 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1B4B_B 1B4A_A 3V4G_A 1F9N_F 2P5M_A 1XXA_E 1XXC_C 1XXB_F 3LAJ_D 3BUE_D ....
Probab=50.38 E-value=21 Score=19.46 Aligned_cols=27 Identities=15% Similarity=0.338 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhCCC-----CCeEEEEEcCCC
Q psy7399 8 SVGRVIQSLEEEGLL-----GNSLVVFISDNG 34 (107)
Q Consensus 8 ~ig~l~~~l~~~g~~-----~nTlii~tsDHG 34 (107)
.++.+++.++..+++ +||++|++.+..
T Consensus 27 ~va~~iD~~~~~~I~GtIAgdDTilvi~~~~~ 58 (70)
T PF02863_consen 27 AVAAAIDQLNLPEIFGTIAGDDTILVICRSEE 58 (70)
T ss_dssp HHHHHHHHHCGTTEEEEEEESSEEEEEESTTS
T ss_pred HHHHHHHhcCCcccEEEEeCCCEEEEEeCCHH
Confidence 567777777665543 789999887643
No 94
>PF08886 GshA: Glutamate-cysteine ligase; InterPro: IPR011718 This entry represents a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria []. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.; PDB: 3K1T_A.
Probab=49.86 E-value=27 Score=25.94 Aligned_cols=35 Identities=17% Similarity=0.332 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCeEEEEEcCCCCCC
Q psy7399 3 KSLDESVGRVIQSLEEEGLLGNSLVVFISDNGGPT 37 (107)
Q Consensus 3 ~~~D~~ig~l~~~l~~~g~~~nTlii~tsDHG~~~ 37 (107)
..+|..+.++-++.++-|+.+.-.|++=+|.|...
T Consensus 239 ~~Vd~lL~kir~KY~eygI~e~PfV~VKAD~GTYG 273 (404)
T PF08886_consen 239 SAVDQLLAKIRKKYKEYGIKEKPFVFVKADAGTYG 273 (404)
T ss_dssp HHHHHHHHHHHHHHHHHT--S---EEEEEE-GGG-
T ss_pred HHHHHHHHHHHHHHHHcCCCCCceEEEEcCCCCCC
Confidence 56899999999999999999999999999999754
No 95
>PF01568 Molydop_binding: Molydopterin dinucleotide binding domain; InterPro: IPR006657 A domain in this entry corresponds to the C-terminal domain IV in dimethyl sulphoxide (DMSO)reductase which interacts with the 2-amino pyrimidone ring of both molybdopterin guanine dinucleotide molecules [].; GO: 0016491 oxidoreductase activity, 0030151 molybdenum ion binding, 0055114 oxidation-reduction process; PDB: 2IVF_A 1OGY_G 3ML1_A 3O5A_A 1TI2_G 1VLE_M 1VLD_U 1VLF_O 1TI4_I 1TI6_E ....
Probab=49.31 E-value=17 Score=21.03 Aligned_cols=24 Identities=17% Similarity=0.191 Sum_probs=18.3
Q ss_pred HHHHHhCCCCCeEEEEEcCCCCCC
Q psy7399 14 QSLEEEGLLGNSLVVFISDNGGPT 37 (107)
Q Consensus 14 ~~l~~~g~~~nTlii~tsDHG~~~ 37 (107)
+..++.|+.+...|.++|+.|...
T Consensus 37 ~dA~~~Gi~~Gd~V~v~s~~G~v~ 60 (110)
T PF01568_consen 37 EDAAKLGIKDGDWVRVSSPRGSVE 60 (110)
T ss_dssp HHHHHCT--TTCEEEEEETTEEEE
T ss_pred HHHHHhcCcCCCEEEEEeccceEe
Confidence 456889999999999999999653
No 96
>KOG2645|consensus
Probab=48.92 E-value=16 Score=27.34 Aligned_cols=40 Identities=13% Similarity=0.112 Sum_probs=33.2
Q ss_pred CCccccEEEEcCCCCCCeeeccceehhhHHHHHHHHhCCCC
Q psy7399 63 GGVRNVAALWSPLLRKGQVLENLMHITDWLPTLYFIAGKEK 103 (107)
Q Consensus 63 ~~~~vP~ii~~p~~~~~~~~~~~~~~~Di~pTil~l~gi~~ 103 (107)
..+|.-++.++|.++++.. -.+...++|++-+++++|+.+
T Consensus 345 ~~M~~if~a~Gp~F~~~~~-~~pfenv~vyn~~~~ll~l~~ 384 (418)
T KOG2645|consen 345 SDMRTIFVGHGPSFKKNTK-VPPFENVEIYNLLCDLLGLRP 384 (418)
T ss_pred hhhhhhhhhcccccCCCcc-cCCccceehhhhhhhhcCCcc
Confidence 4578889999999886433 567888999999999999984
No 97
>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.
Probab=48.16 E-value=28 Score=26.67 Aligned_cols=25 Identities=32% Similarity=0.577 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHhCCCCCeEEEEEc
Q psy7399 7 ESVGRVIQSLEEEGLLGNSLVVFIS 31 (107)
Q Consensus 7 ~~ig~l~~~l~~~g~~~nTlii~ts 31 (107)
+.+.++++.+++.+.+++|+||+.+
T Consensus 202 rev~e~~~~~~~~~~l~~tvvV~at 226 (501)
T TIGR00962 202 STVAQVVRKLEEHGAMDYTIVVAAT 226 (501)
T ss_pred HHHHHHHHHHHhcCccceeEEEEec
Confidence 4678899999999999999998754
No 98
>PF02277 DBI_PRT: Phosphoribosyltransferase; InterPro: IPR003200 Nicotinate mononucleotide (NaMN):5,6-dimethylbenzimidazole (DMB) phosphoribosyltransferase (CobT) plays a central role in the synthesis of alpha-ribazole-5'-phosphate, an intermediate for the lower ligand of cobalamin []. It is one of the enzymes of the anaerobic pathway of cobalamin biosynthesis, and one of the four proteins (CobU, CobT, CobC, and CobS) involved in the synthesis of the lower ligand and the assembly of the nucleotide loop [, ]. Vitamin B12 (cobalamin) is used as a cofactor in a number of enzyme-catalysed reactions in bacteria, archaea and eukaryotes []. The biosynthetic pathway to adenosylcobalamin from its five-carbon precursor, 5-aminolaevulinic acid, can be divided into three sections: (1) the biosynthesis of uroporphyrinogen III from 5-aminolaevulinic acid; (2) the conversion of uroporphyrinogen III into the ring-contracted, deacylated intermediate precorrin 6 or cobalt-precorrin 6; and (3) the transformation of this intermediate to form adenosylcobalamin []. Cobalamin is synthesised by bacteria and archaea via two alternative routes that differ primarily in the steps of section 2 that lead to the contraction of the macrocycle and excision of the extruded carbon molecule (and its attached methyl group) []. One pathway (exemplified by Pseudomonas denitrificans) incorporates molecular oxygen into the macrocycle as a prerequisite to ring contraction, and has consequently been termed the aerobic pathway. The alternative, anaerobic, route (exemplified by Salmonella typhimurium) takes advantage of a chelated cobalt ion, in the absence of oxygen, to set the stage for ring contraction []. This entry represents bacterial- and archaeal-type nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase enzymes involved in dimethylbenzimidazole synthesis, as well as a group of proteins of unknown function. This function is essential to de novo cobalamin (vitamin B12) production in bacteria.; GO: 0008939 nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1L5F_A 1L4E_A 1JHO_A 1L4F_A 1D0V_A 1L4N_A 1L4G_A 1JHR_A 1L5M_A 1JHA_A ....
Probab=47.71 E-value=7.7 Score=27.94 Aligned_cols=17 Identities=29% Similarity=0.520 Sum_probs=11.7
Q ss_pred CCCCeEEEEEcCCCCCC
Q psy7399 21 LLGNSLVVFISDNGGPT 37 (107)
Q Consensus 21 ~~~nTlii~tsDHG~~~ 37 (107)
+.+.+++||.+|||-..
T Consensus 51 ~~~~~v~vfaaDhGv~~ 67 (327)
T PF02277_consen 51 LERKAVLVFAADHGVAA 67 (327)
T ss_dssp --EEEEEEEEE-BGGGG
T ss_pred cccceEEEEecCCCccc
Confidence 44569999999999654
No 99
>COG1355 Predicted dioxygenase [General function prediction only]
Probab=47.26 E-value=47 Score=23.53 Aligned_cols=32 Identities=28% Similarity=0.399 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHH-HhCCCCCeEEEEEcCCCCCC
Q psy7399 3 KSLDESVGRVIQSLE-EEGLLGNSLVVFISDNGGPT 37 (107)
Q Consensus 3 ~~~D~~ig~l~~~l~-~~g~~~nTlii~tsDHG~~~ 37 (107)
..+++.+|+.+-++. +.| |++||.+||--...
T Consensus 164 ~~~a~~ig~~i~k~i~e~~---~~liIaSSDf~HYe 196 (279)
T COG1355 164 KEVARDIGRAIAKVIKELG---DALIIASSDFTHYE 196 (279)
T ss_pred HHHHHHHHHHHHHHHhhcC---CeEEEEecCccccC
Confidence 356788888776664 444 89999999965543
No 100
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=46.18 E-value=45 Score=22.94 Aligned_cols=27 Identities=30% Similarity=0.514 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhCCCCCeEEEEEcCCCCCC
Q psy7399 8 SVGRVIQSLEEEGLLGNSLVVFISDNGGPT 37 (107)
Q Consensus 8 ~ig~l~~~l~~~g~~~nTlii~tsDHG~~~ 37 (107)
.+..++++|.+.|+ .++-++||.|...
T Consensus 197 ~l~~iI~~l~~~g~---~VvAivsD~g~~N 223 (236)
T PF12017_consen 197 ILKNIIEKLHEIGY---NVVAIVSDMGSNN 223 (236)
T ss_pred HHHHHHHHHHHCCC---EEEEEECCCCcch
Confidence 46788999999998 6999999999765
No 101
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=45.56 E-value=26 Score=26.79 Aligned_cols=25 Identities=32% Similarity=0.522 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhCCCCCeEEEEEc
Q psy7399 7 ESVGRVIQSLEEEGLLGNSLVVFIS 31 (107)
Q Consensus 7 ~~ig~l~~~l~~~g~~~nTlii~ts 31 (107)
+.+.+|++.+++.|.+++|+||+.+
T Consensus 182 rev~e~~~~l~~~~~l~~tvvV~at 206 (485)
T CHL00059 182 SSVAQVVTTLQERGAMEYTIVVAET 206 (485)
T ss_pred hHHHHHHHHhhcccchhceEEEEeC
Confidence 5678999999999999999888764
No 102
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=45.50 E-value=35 Score=23.00 Aligned_cols=27 Identities=30% Similarity=0.463 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHhCCCCCeEEEEEcCC
Q psy7399 7 ESVGRVIQSLEEEGLLGNSLVVFISDN 33 (107)
Q Consensus 7 ~~ig~l~~~l~~~g~~~nTlii~tsDH 33 (107)
+.+.++++.+++.+..++|++|+.+-+
T Consensus 54 ~Ev~~~~~~~~~~~~~~~t~vv~~t~~ 80 (215)
T PF00006_consen 54 REVTEFIEELKGEGALERTVVVAATSD 80 (215)
T ss_dssp HHHHHHHHHHHHTTGGGGEEEEEEETT
T ss_pred hhHHHHHHHHhhcccccccccccccch
Confidence 467889999999999999988887633
No 103
>PRK13343 F0F1 ATP synthase subunit alpha; Provisional
Probab=44.47 E-value=33 Score=26.33 Aligned_cols=25 Identities=40% Similarity=0.569 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHhCCCCCeEEEEEc
Q psy7399 7 ESVGRVIQSLEEEGLLGNSLVVFIS 31 (107)
Q Consensus 7 ~~ig~l~~~l~~~g~~~nTlii~ts 31 (107)
+.+.+|++.+++.|..++|+||+.+
T Consensus 203 rev~e~~~~l~~~~~l~~tvvV~at 227 (502)
T PRK13343 203 SAVARVIETLREHGALEYTTVVVAE 227 (502)
T ss_pred HHHHHHHHHHHhcCccceeEEEEec
Confidence 4688999999999999999888764
No 104
>PRK14111 F0F1 ATP synthase subunit gamma; Provisional
Probab=44.25 E-value=18 Score=25.46 Aligned_cols=12 Identities=25% Similarity=0.423 Sum_probs=10.7
Q ss_pred EEEEEcCCCCCC
Q psy7399 26 LVVFISDNGGPT 37 (107)
Q Consensus 26 lii~tsDHG~~~ 37 (107)
+|+|+||+|-+.
T Consensus 81 ~IvitSDrGLCG 92 (290)
T PRK14111 81 LILVTPDRGLAG 92 (290)
T ss_pred EEEEeCCCCccc
Confidence 799999999875
No 105
>PRK13424 F0F1 ATP synthase subunit gamma; Provisional
Probab=44.18 E-value=32 Score=24.17 Aligned_cols=12 Identities=33% Similarity=0.379 Sum_probs=10.4
Q ss_pred EEEEEcCCCCCC
Q psy7399 26 LVVFISDNGGPT 37 (107)
Q Consensus 26 lii~tsDHG~~~ 37 (107)
+|||+||.|.+.
T Consensus 79 ~IvitSDrGLCG 90 (291)
T PRK13424 79 IVLITSDRGLCG 90 (291)
T ss_pred EEEEeCCCcccc
Confidence 688999999875
No 106
>cd07361 MEMO_like Memo (mediator of ErbB2-driven cell motility) is co-precipitated with the C terminus of ErbB2, a protein involved in cell motility. This subfamily is composed of Memo (mediator of ErbB2-driven cell motility) and similar proteins. Memo is a protein that is co-precipitated with the C terminus of ErbB2, a protein involved in cell motility. It is required for the ErbB2-driven cell mobility and is found in protein complexes with cofilin, ErbB2 and PLCgamma1. However, Memo is not homologous to any known signaling proteins, and its function in ErbB2 signaling is not known. Structural studies show that Memo binds directly to a specific ErbB2-derived phosphopeptide. Memo is homologous to class III nonheme iron-dependent extradiol dioxygenases, however, no metal binding or enzymatic activity can be detected for Memo. This subfamily also contains a few members containing a C-terminal AMMECR1-like domain. The AMMECR1 protein was proposed to be a regulatory factor that is potentia
Probab=44.16 E-value=38 Score=23.37 Aligned_cols=28 Identities=21% Similarity=0.199 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHhCCCCCeEEEEEcCCCCCC
Q psy7399 7 ESVGRVIQSLEEEGLLGNSLVVFISDNGGPT 37 (107)
Q Consensus 7 ~~ig~l~~~l~~~g~~~nTlii~tsDHG~~~ 37 (107)
+.+|++++.+ -..++++||.+||--...
T Consensus 157 ~~~g~~l~~~---~~~~~~~iV~SsDlSH~~ 184 (266)
T cd07361 157 EALAEALSKY---LLDPDTLIVISSDFSHYG 184 (266)
T ss_pred HHHHHHHHHH---hcCCCeEEEEeCCCCCcC
Confidence 3567777666 234789999999976554
No 107
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=43.86 E-value=36 Score=15.78 Aligned_cols=15 Identities=47% Similarity=0.919 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHhCC
Q psy7399 7 ESVGRVIQSLEEEGL 21 (107)
Q Consensus 7 ~~ig~l~~~l~~~g~ 21 (107)
+-+.|++.+|+++|+
T Consensus 17 ETVSR~l~~l~~~gl 31 (32)
T PF00325_consen 17 ETVSRILKKLERQGL 31 (32)
T ss_dssp HHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHcCC
Confidence 357889999999885
No 108
>PRK07165 F0F1 ATP synthase subunit alpha; Validated
Probab=43.81 E-value=33 Score=26.37 Aligned_cols=26 Identities=23% Similarity=0.487 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHhCCCCCeEEEEEcC
Q psy7399 7 ESVGRVIQSLEEEGLLGNSLVVFISD 32 (107)
Q Consensus 7 ~~ig~l~~~l~~~g~~~nTlii~tsD 32 (107)
+.+.++++.+++.|..++|+||..+.
T Consensus 184 ~ev~~~~~~l~~~gal~~tvvV~ats 209 (507)
T PRK07165 184 ENLSRIYETLKEHDALKNTIIIDAPS 209 (507)
T ss_pred HHHHHHHHHhhhcCceeeeEEEEeCC
Confidence 46788999999999999999987664
No 109
>PTZ00185 ATPase alpha subunit; Provisional
Probab=43.60 E-value=39 Score=26.38 Aligned_cols=26 Identities=23% Similarity=0.286 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhCCCCCeEEEEEcC
Q psy7399 7 ESVGRVIQSLEEEGLLGNSLVVFISD 32 (107)
Q Consensus 7 ~~ig~l~~~l~~~g~~~nTlii~tsD 32 (107)
+.+.++.+.|++.|.+++|+||+.+-
T Consensus 238 rEV~ei~~~L~e~GaL~~TvVV~AtA 263 (574)
T PTZ00185 238 SNVARIHRLLRSYGALRYTTVMAATA 263 (574)
T ss_pred HHHHHHHHHHHhcCCccceEEEEECC
Confidence 45677999999999999998887653
No 110
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=43.51 E-value=36 Score=26.10 Aligned_cols=26 Identities=27% Similarity=0.530 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHhCCCCCeEEEEEcC
Q psy7399 7 ESVGRVIQSLEEEGLLGNSLVVFISD 32 (107)
Q Consensus 7 ~~ig~l~~~l~~~g~~~nTlii~tsD 32 (107)
+.+.++++.+++.|.+++|+||+.+-
T Consensus 203 rev~e~i~~l~~~~~l~~tvvV~ats 228 (497)
T TIGR03324 203 SAVAKVVANLREHGAMDYTIVVVTEG 228 (497)
T ss_pred HHHHHHHHHhhhcCCcceeEEEEeCC
Confidence 46788999999999999999887653
No 111
>PF05763 DUF835: Protein of unknown function (DUF835); InterPro: IPR008553 The members of this archaebacterial protein entry are around 250-300 amino acid residues in length. The function of these proteins is not known.
Probab=43.22 E-value=42 Score=20.97 Aligned_cols=30 Identities=30% Similarity=0.441 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHhCCCCCeEEEEEcCCCCC
Q psy7399 7 ESVGRVIQSLEEEGLLGNSLVVFISDNGGP 36 (107)
Q Consensus 7 ~~ig~l~~~l~~~g~~~nTlii~tsDHG~~ 36 (107)
+.+-+++..||+.=+..|+.+|++.|-...
T Consensus 94 ~~v~KFL~~LkD~~~~~~~~lIl~~~~~al 123 (136)
T PF05763_consen 94 ESVLKFLASLKDYALLNNGTLILVVDPEAL 123 (136)
T ss_pred HHHHHHHHHhHHHeeccCCEEEEEEChhhc
Confidence 456789999999888899999999886543
No 112
>TIGR03323 alt_F1F0_F1_gam alternate F1F0 ATPase, F1 subunit gamma. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 gamma subunit of this apparent second ATP synthase.
Probab=42.94 E-value=44 Score=23.48 Aligned_cols=12 Identities=42% Similarity=0.409 Sum_probs=10.7
Q ss_pred EEEEEcCCCCCC
Q psy7399 26 LVVFISDNGGPT 37 (107)
Q Consensus 26 lii~tsDHG~~~ 37 (107)
+|+|+||.|.+.
T Consensus 74 ~IvitSDrGLCG 85 (285)
T TIGR03323 74 AIVFGSDQGLVG 85 (285)
T ss_pred EEEEECCCcCch
Confidence 799999999875
No 113
>PRK13370 mhpB 3-(2,3-dihydroxyphenyl)propionate dioxygenase; Provisional
Probab=42.76 E-value=66 Score=23.06 Aligned_cols=31 Identities=10% Similarity=0.090 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHhCCCCCeEEEEEcCCCCC
Q psy7399 4 SLDESVGRVIQSLEEEGLLGNSLVVFISDNGGP 36 (107)
Q Consensus 4 ~~D~~ig~l~~~l~~~g~~~nTlii~tsDHG~~ 36 (107)
.+++.+.++-+++++. .-+++|||+.||...
T Consensus 26 ~v~~a~~~l~~~l~~~--~PD~iVIigpdH~~~ 56 (313)
T PRK13370 26 EVNAVIAAAREFVAAF--DPELVVLFAPDHYNG 56 (313)
T ss_pred HHHHHHHHHHHHHHHh--CCCEEEEEcCCcccc
Confidence 4555666666666553 347999999999987
No 114
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=42.55 E-value=36 Score=23.39 Aligned_cols=24 Identities=29% Similarity=0.584 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHhCCCCCeEEEEEcCCCCC
Q psy7399 8 SVGRVIQSLEEEGLLGNSLVVFISDNGGP 36 (107)
Q Consensus 8 ~ig~l~~~l~~~g~~~nTlii~tsDHG~~ 36 (107)
.|.+++..|+++|+. |+.+||--.
T Consensus 177 dIq~iI~~L~~rgiG-----vLITDHNVR 200 (243)
T COG1137 177 DIQRIIKHLKDRGIG-----VLITDHNVR 200 (243)
T ss_pred HHHHHHHHHHhCCce-----EEEccccHH
Confidence 578999999999865 788999643
No 115
>PF05746 DALR_1: DALR anticodon binding domain; InterPro: IPR008909 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids [].; GO: 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1F7V_A 1F7U_A 1BS2_A 1IQ0_A.
Probab=42.21 E-value=19 Score=21.19 Aligned_cols=21 Identities=14% Similarity=-0.031 Sum_probs=12.1
Q ss_pred ehhhHHHHHHHHhCCCCCCCC
Q psy7399 87 HITDWLPTLYFIAGKEKNIDS 107 (107)
Q Consensus 87 ~~~Di~pTil~l~gi~~~~~~ 107 (107)
....++-..++++|+++|..|
T Consensus 99 ~v~~vl~~~l~llgi~~~~~M 119 (119)
T PF05746_consen 99 AVRQVLKNGLDLLGIEPLEKM 119 (119)
T ss_dssp HHHHHHHHHHHHTT----S--
T ss_pred HHHHHHHHHHHHcCCCccccC
Confidence 345788899999999999876
No 116
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=41.23 E-value=43 Score=25.73 Aligned_cols=25 Identities=32% Similarity=0.565 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhCCCCCeEEEEEc
Q psy7399 7 ESVGRVIQSLEEEGLLGNSLVVFIS 31 (107)
Q Consensus 7 ~~ig~l~~~l~~~g~~~nTlii~ts 31 (107)
+.+.+|++.+++.+.+++|+||+.+
T Consensus 203 ~ev~e~~~~~~~~~~l~~tvvv~at 227 (502)
T PRK09281 203 STVAQVVRKLEEHGAMEYTIVVAAT 227 (502)
T ss_pred HHHHHHHHHHhhcCCccceEEEEeC
Confidence 4678899999999999999888764
No 117
>PRK13363 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=41.20 E-value=57 Score=23.66 Aligned_cols=29 Identities=14% Similarity=0.101 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHhCCCCCeEEEEEcCCCCCC
Q psy7399 7 ESVGRVIQSLEEEGLLGNSLVVFISDNGGPT 37 (107)
Q Consensus 7 ~~ig~l~~~l~~~g~~~nTlii~tsDHG~~~ 37 (107)
+.+.++-+++++. .-+++|||+.||...+
T Consensus 75 ~a~~~~~~~i~~~--~PDvlViispdh~~~F 103 (335)
T PRK13363 75 AAIERMRDAIEAA--RIDVAVIVGNDQMELF 103 (335)
T ss_pred HHHHHHHHHHHHh--CCCEEEEEcCCchhhc
Confidence 4566666667665 3479999999996654
No 118
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=41.11 E-value=42 Score=25.44 Aligned_cols=28 Identities=29% Similarity=0.442 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHhCCCCCeEEEEE-cCCC
Q psy7399 7 ESVGRVIQSLEEEGLLGNSLVVFI-SDNG 34 (107)
Q Consensus 7 ~~ig~l~~~l~~~g~~~nTlii~t-sDHG 34 (107)
+.+.+|++.+++.+..++|+||+. ||.-
T Consensus 188 rEv~e~~~~~~~~~~l~rtvvV~atsd~p 216 (460)
T PRK04196 188 EEANFFMEDFEETGALERSVVFLNLADDP 216 (460)
T ss_pred HHHHHHHHHHHhcCCcceEEEEEEcCCCC
Confidence 467889999999999999988865 5443
No 119
>PRK13423 F0F1 ATP synthase subunit gamma; Provisional
Probab=40.84 E-value=33 Score=24.14 Aligned_cols=12 Identities=50% Similarity=0.432 Sum_probs=10.7
Q ss_pred EEEEEcCCCCCC
Q psy7399 26 LVVFISDNGGPT 37 (107)
Q Consensus 26 lii~tsDHG~~~ 37 (107)
+|+|+||.|.+.
T Consensus 78 ~IvitSDrGLCG 89 (288)
T PRK13423 78 LVVVTSDRGLCG 89 (288)
T ss_pred EEEEeCCCCCcc
Confidence 899999999875
No 120
>PF05827 ATP-synt_S1: Vacuolar ATP synthase subunit S1 (ATP6S1); InterPro: IPR024722 This family consists of metazoan vacuolar ATP synthase subunit S1 proteins [] and fungal proteins belonging to the BIG family. In Candida albicans BIG is required for normal beta-1,6-glucan synthesis, hyphal morphogenesis, adhesion and virulence [].
Probab=40.81 E-value=30 Score=24.01 Aligned_cols=29 Identities=24% Similarity=0.330 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCCeEEEEEcCC
Q psy7399 2 LKSLDESVGRVIQSLEEEGLLGNSLVVFISDN 33 (107)
Q Consensus 2 i~~~D~~ig~l~~~l~~~g~~~nTlii~tsDH 33 (107)
++.-|..|++++..|.+.+ +..+|+||+.
T Consensus 149 L~~nD~~l~~vl~~l~s~~---~ytvIyts~~ 177 (282)
T PF05827_consen 149 LSDNDEFLRKVLSKLPSPD---PYTVIYTSTP 177 (282)
T ss_pred hhhhhHHHHHHHHhcCCCC---cEEEEEEccC
Confidence 4667999999999998875 3457788866
No 121
>KOG2791|consensus
Probab=40.57 E-value=52 Score=24.30 Aligned_cols=28 Identities=18% Similarity=0.313 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHhCCCCCeEEEEEcCCC
Q psy7399 7 ESVGRVIQSLEEEGLLGNSLVVFISDNG 34 (107)
Q Consensus 7 ~~ig~l~~~l~~~g~~~nTlii~tsDHG 34 (107)
..+.-++|.|++..--++|++||.-|--
T Consensus 130 ~Ylr~lveSlrk~kGI~~tLlifSHD~~ 157 (455)
T KOG2791|consen 130 QYLRVLVESLRKVKGISETLLIFSHDGY 157 (455)
T ss_pred HHHHHHHHHHHhccCccceEEEEeccch
Confidence 3567889999887667899999988753
No 122
>PF11181 YflT: Heat induced stress protein YflT
Probab=40.07 E-value=76 Score=18.52 Aligned_cols=28 Identities=21% Similarity=0.374 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHhCCCCCeEEEEEcCC
Q psy7399 6 DESVGRVIQSLEEEGLLGNSLVVFISDN 33 (107)
Q Consensus 6 D~~ig~l~~~l~~~g~~~nTlii~tsDH 33 (107)
...+-.-++.|+..|..++-|.|++=|.
T Consensus 9 ~~E~~~~I~~L~~~Gy~~ddI~Vva~d~ 36 (103)
T PF11181_consen 9 EEEALSAIEELKAQGYSEDDIYVVAKDK 36 (103)
T ss_pred HHHHHHHHHHHHHcCCCcccEEEEEcCc
Confidence 4566778899999999999999888544
No 123
>COG1438 ArgR Arginine repressor [Transcription]
Probab=39.46 E-value=32 Score=22.07 Aligned_cols=29 Identities=17% Similarity=0.467 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHhCCC-----CCeEEEEEcCCCC
Q psy7399 7 ESVGRVIQSLEEEGLL-----GNSLVVFISDNGG 35 (107)
Q Consensus 7 ~~ig~l~~~l~~~g~~-----~nTlii~tsDHG~ 35 (107)
+.++++++.+...+++ |+|++|++.|...
T Consensus 105 ~~ia~~lD~~~~~eIlGTIaGdDTilVi~r~~~~ 138 (150)
T COG1438 105 QLIARLLDSLAKDEILGTIAGDDTILVICRSEET 138 (150)
T ss_pred HHHHHHHHhcCchhhheeeeCCCeEEEEecCchh
Confidence 4678888888766543 7899999887543
No 124
>cd00008 53EXOc 5'-3' exonuclease; T5 type 5'-3' exonuclease domains may co-occur with DNA polymerase I (Pol I) domains, or be part of Pol I containing complexes. They digest dsDNA and ssDNA, releasing mono-,di- and tri-nucleotides, as well as oligonucleotides, and have also been reported to possess RNase H activity. Also called 5' nuclease family, involved in structure-specific cleavage of flaps formed by Pol I activity (similar to mammalian flap endonuclease I, FEN-1). A single nucleic acid strand may be threaded through the 5' nuclease enzyme before cleavage occurs. The domain binds two divalent metal ions which are necessary for activity.
Probab=38.49 E-value=61 Score=22.09 Aligned_cols=31 Identities=23% Similarity=0.374 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHhCCCCCeEEEEEcCCCCCC
Q psy7399 4 SLDESVGRVIQSLEEEGLLGNSLVVFISDNGGPT 37 (107)
Q Consensus 4 ~~D~~ig~l~~~l~~~g~~~nTlii~tsDHG~~~ 37 (107)
+.|..++.+..+.++.| ..++|+|+|-....
T Consensus 108 EADD~ia~la~~~~~~g---~~~~I~S~DkD~~q 138 (240)
T cd00008 108 EADDVIGTLAKKAEAEG---YKVVIVSGDKDLLQ 138 (240)
T ss_pred CHHHHHHHHHHHHHHcC---CeEEEEeCCCChhh
Confidence 57899999998888776 45788899886543
No 125
>PHA00439 exonuclease
Probab=37.97 E-value=64 Score=22.94 Aligned_cols=31 Identities=16% Similarity=0.114 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHhCCCCCeEEEEEcCCCCC
Q psy7399 4 SLDESVGRVIQSLEEEGLLGNSLVVFISDNGGP 36 (107)
Q Consensus 4 ~~D~~ig~l~~~l~~~g~~~nTlii~tsDHG~~ 36 (107)
+.|..||.+-.+.++.|. +.++|+++|-...
T Consensus 120 EADDvIgtla~~~~~~g~--~~vvIvS~DKDl~ 150 (286)
T PHA00439 120 EGDDVMGIIGTNPSLFGF--KKAVLVSCDKDFK 150 (286)
T ss_pred cHHHHHHHHHHHHHHCCC--CeEEEEeCCCCHh
Confidence 579999999988887653 3578889987643
No 126
>PF04220 YihI: Der GTPase activator (YihI); InterPro: IPR007336 This entry contains Escherichia coli (strain K12) YihI. YihI activates the GTPase activity of Der, a 50S ribosomal subunit stability factor and can therefore be considered a GAP (GTPase activating)-like protein. The stimulation is specific to Der as YihI does not stimulate the GTPase activity of Era or ObgE. The interaction of YihI with Der requires only the C-terminal 78 amino acids of YihI []. A yihI deletion mutant is viable and shows a shorter lag period, but the same post-lag growth rate as a wild-type strain. yihI is expressed during the lag period. Overexpression of yihI inhibits cell growth and biogenesis of the 50S ribosomal subunit []. YihI is an unusual, highly hydrophilic protein with an uneven distribution of charged residues, resulting in an N-terminal region with high pI and a C-terminal region with low pI [].
Probab=37.86 E-value=54 Score=21.47 Aligned_cols=21 Identities=33% Similarity=0.509 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHhCCCC
Q psy7399 3 KSLDESVGRVIQSLEEEGLLG 23 (107)
Q Consensus 3 ~~~D~~ig~l~~~l~~~g~~~ 23 (107)
.|+|.++.|+=+.+++.|+.+
T Consensus 129 ~yvD~~LdRi~~Lm~~LGi~~ 149 (169)
T PF04220_consen 129 KYVDEKLDRIEELMEELGIED 149 (169)
T ss_pred HHHHHHHHHHHHHHHHhCCCc
Confidence 689999999999999999864
No 127
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=37.72 E-value=46 Score=27.39 Aligned_cols=26 Identities=12% Similarity=0.328 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHhCCCCCeEEEEEcCCCCC
Q psy7399 8 SVGRVIQSLEEEGLLGNSLVVFISDNGGP 36 (107)
Q Consensus 8 ~ig~l~~~l~~~g~~~nTlii~tsDHG~~ 36 (107)
...+.+++|++.|+ .++++|+||-..
T Consensus 554 ~a~~aI~~l~~aGI---~v~miTGD~~~t 579 (902)
T PRK10517 554 TTAPALKALKASGV---TVKILTGDSELV 579 (902)
T ss_pred hHHHHHHHHHHCCC---EEEEEcCCCHHH
Confidence 56778999999998 489999999754
No 128
>PF00656 Peptidase_C14: Caspase domain; InterPro: IPR011600 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of sequences represent the p20 (20kDa) and p10 (10kDa) subunits of caspases, which together form the catalytic domain of the caspase and are derived from the p45 (45 kDa) precursor (IPR002398 from INTERPRO) []. Caspases (Cysteine-dependent ASPartyl-specific proteASE) are cysteine peptidases that belong to the MEROPS peptidase family C14 (caspase family, clan CD) based on the architecture of their catalytic dyad or triad []. Caspases are tightly regulated proteins that require zymogen activation to become active, and once active can be regulated by caspase inhibitors. Activated caspases act as cysteine proteases, using the sulphydryl group of a cysteine side chain for catalysing peptide bond cleavage at aspartyl residues in their substrates. The catalytic cysteine and histidine residues are on the p20 subunit after cleavage of the p45 precursor. Caspases are mainly involved in mediating cell death (apoptosis) [, , ]. They have two main roles within the apoptosis cascade: as initiators that trigger the cell death process, and as effectors of the process itself. Caspase-mediated apoptosis follows two main pathways, one extrinsic and the other intrinsic or mitochondrial-mediated. The extrinsic pathway involves the stimulation of various TNF (tumour necrosis factor) cell surface receptors on cells targeted to die by various TNF cytokines that are produced by cells such as cytotoxic T cells. The activated receptor transmits the signal to the cytoplasm by recruiting FADD, which forms a death-inducing signalling complex (DISC) with caspase-8. The subsequent activation of caspase-8 initiates the apoptosis cascade involving caspases 3, 4, 6, 7, 9 and 10. The intrinsic pathway arises from signals that originate within the cell as a consequence of cellular stress or DNA damage. The stimulation or inhibition of different Bcl-2 family receptors results in the leakage of cytochrome c from the mitochondria, and the formation of an apoptosome composed of cytochrome c, Apaf1 and caspase-9. The subsequent activation of caspase-9 initiates the apoptosis cascade involving caspases 3 and 7, among others. At the end of the cascade, caspases act on a variety of signal transduction proteins, cytoskeletal and nuclear proteins, chromatin-modifying proteins, DNA repair proteins and endonucleases that destroy the cell by disintegrating its contents, including its DNA. The different caspases have different domain architectures depending upon where they fit into the apoptosis cascades, however they all carry the catalytic p10 and p20 subunits. Caspases can have roles other than in apoptosis, such as caspase-1 (interleukin-1 beta convertase) (3.4.22.36 from EC), which is involved in the inflammatory process. The activation of apoptosis can sometimes lead to caspase-1 activation, providing a link between apoptosis and inflammation, such as during the targeting of infected cells. Caspases may also be involved in cell differentiation [].; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 1M72_C 2NN3_C 3V4L_A 3IBF_B 2QLF_D 2QLB_C 3IBC_B 2QL9_A 3R5K_B 3H1P_A ....
Probab=37.28 E-value=37 Score=22.42 Aligned_cols=29 Identities=21% Similarity=0.389 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhCCCCCeEEEEEcCCCCCC
Q psy7399 9 VGRVIQSLEEEGLLGNSLVVFISDNGGPT 37 (107)
Q Consensus 9 ig~l~~~l~~~g~~~nTlii~tsDHG~~~ 37 (107)
|.+.++.+.+.....++++++.|=||...
T Consensus 51 i~~~l~~l~~~~~~~D~~~~yfsGHG~~~ 79 (248)
T PF00656_consen 51 ILKALRELLQRAQPGDSVVFYFSGHGIQV 79 (248)
T ss_dssp HHHHHHHHHTSGGTCSEEEEEEESEEETE
T ss_pred HHHHHhhhhccCCCCCeeEEEEecccccc
Confidence 34444444443336689999999999663
No 129
>PRK09482 flap endonuclease-like protein; Provisional
Probab=37.11 E-value=67 Score=22.39 Aligned_cols=30 Identities=13% Similarity=0.285 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHhCCCCCeEEEEEcCCCCC
Q psy7399 4 SLDESVGRVIQSLEEEGLLGNSLVVFISDNGGP 36 (107)
Q Consensus 4 ~~D~~ig~l~~~l~~~g~~~nTlii~tsDHG~~ 36 (107)
+.|..+|.+..++.+.| ..++|+++|.-..
T Consensus 107 EADDvIatla~~~~~~~---~~v~I~S~DKDl~ 136 (256)
T PRK09482 107 EADDLIATLAVKVAQAG---HQATIVSTDKGYC 136 (256)
T ss_pred CHHHHHHHHHHHHHHCC---CeEEEEECCCCcc
Confidence 67999999998888765 3688899998654
No 130
>PHA02567 rnh RnaseH; Provisional
Probab=36.89 E-value=61 Score=23.29 Aligned_cols=30 Identities=17% Similarity=0.328 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHhCCCCCeEEEEEcCCCCC
Q psy7399 4 SLDESVGRVIQSLEEEGLLGNSLVVFISDNGGP 36 (107)
Q Consensus 4 ~~D~~ig~l~~~l~~~g~~~nTlii~tsDHG~~ 36 (107)
+.|..||.+..++.+.| .-++|+++|....
T Consensus 130 EADDvIgTLA~k~~~~g---~~VvIvS~DKDl~ 159 (304)
T PHA02567 130 EADDIIAVLTKKFSAEG---RPVLIVSSDGDFT 159 (304)
T ss_pred cHHHHHHHHHHHHHhCC---CcEEEEeCCCChh
Confidence 57999999999988765 3578899998654
No 131
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=36.81 E-value=92 Score=18.42 Aligned_cols=31 Identities=26% Similarity=0.397 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHhCCC--CCeEEEEEcCCC
Q psy7399 4 SLDESVGRVIQSLEEEGLL--GNSLVVFISDNG 34 (107)
Q Consensus 4 ~~D~~ig~l~~~l~~~g~~--~nTlii~tsDHG 34 (107)
..|..+...++.++++|+. ++.+|++.+...
T Consensus 72 ~~~~~~~~a~~~~~~~g~~~~gd~vVv~~g~~~ 104 (117)
T PF02887_consen 72 DTEELIAEALEYAKERGLLKPGDKVVVVAGMPF 104 (117)
T ss_dssp SHHHHHHHHHHHHHHTTSS-TTSEEEEEEESST
T ss_pred cHHHHHHHHHHHHHHcCCCCCCCEEEEEeCCCC
Confidence 3688899999999999985 567777777554
No 132
>COG3511 PlcC Phospholipase C [Cell envelope biogenesis, outer membrane]
Probab=36.76 E-value=2e+02 Score=22.36 Aligned_cols=88 Identities=18% Similarity=0.124 Sum_probs=48.8
Q ss_pred HHhCCCCCeEEEEEcCCCCCCCCCCc----cc---CCCCCC---C--Ccc--cccCCccCCCccccEEEEcCCCCCCeee
Q psy7399 17 EEEGLLGNSLVVFISDNGGPTVDSLH----FH---GNTASN---W--PLR--GTKYSFHEGGVRNVAALWSPLLRKGQVL 82 (107)
Q Consensus 17 ~~~g~~~nTlii~tsDHG~~~~~~~~----~~---~~~~~~---~--~~~--~~~~~~~~~~~~vP~ii~~p~~~~~~~~ 82 (107)
.+.-++++|+++++=|-+..+.+... .. ..+... . ... ..++..+.-+.|||+++..|-.+.+...
T Consensus 325 ~np~vW~kT~l~v~~DE~~GfyDhv~Ppt~p~~~~g~~l~~~~~~d~~~e~~~~~G~p~gLgfrvP~~visPws~gg~~~ 404 (527)
T COG3511 325 SNPAVWAKTVLFVTYDENGGFYDHVVPPTAPSGTPGEHLPGLSTIDAAFESGIDRGSPYGLGFRVPCGVISPWSRGGYVD 404 (527)
T ss_pred cCcccccceeEEEEecCCCCcccccCCCCCCCCCccccccCCccccccccccccCCCCcceeccccceeecCCCCCCeee
Confidence 34568999999999997765533110 00 000000 0 000 1133455667899999999988777766
Q ss_pred ccceehhhHHHHHHHHhCCCCC
Q psy7399 83 ENLMHITDWLPTLYFIAGKEKN 104 (107)
Q Consensus 83 ~~~~~~~Di~pTil~l~gi~~~ 104 (107)
.+...+.-..--+-.-.|+..|
T Consensus 405 sd~fDhts~l~f~~~rfgv~~P 426 (527)
T COG3511 405 SDTFDHTSALRFLELRFGVPVP 426 (527)
T ss_pred ecccchHHHHHhhhhhccccCC
Confidence 6655554444433334444444
No 133
>cd07359 PCA_45_Doxase_B_like Subunit B of the Class III Extradiol dioxygenase, Protocatechuate 4,5-dioxygenase, and simlar enzymes. This subfamily of class III extradiol dioxygenases consists of a number of proteins with known enzymatic activities: Protocatechuate (PCA) 4,5-dioxygenase (LigAB), 2,3-dihydroxyphenylpropionate 1,2-dioxygenase (MhpB), 3-O-Methylgallate Dioxygenase, 2-aminophenol 1,6-dioxygenase, as well as proteins without any known enzymatic activity. These proteins play essential roles in the degradation of aromatic compounds by catalyzing the incorporation of both atoms of molecular oxygen into their preferred substrates. As members of the Class III extradiol dioxygenase family, the enzymes use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like class III enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model repres
Probab=36.39 E-value=84 Score=21.65 Aligned_cols=29 Identities=21% Similarity=0.154 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHhCCCCCeEEEEEcCCCCCC
Q psy7399 7 ESVGRVIQSLEEEGLLGNSLVVFISDNGGPT 37 (107)
Q Consensus 7 ~~ig~l~~~l~~~g~~~nTlii~tsDHG~~~ 37 (107)
+.+.++-+++++ ..-+++||+++||-...
T Consensus 31 ~~l~~~~~~l~~--~~Pd~ivvis~~h~~~~ 59 (271)
T cd07359 31 AAFARIRDRLEA--ARPDVVVVVGNDHFTNF 59 (271)
T ss_pred HHHHHHHHHHHH--hCCCEEEEEeCcHHhhc
Confidence 344444455544 23589999999987764
No 134
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=36.08 E-value=59 Score=23.12 Aligned_cols=27 Identities=15% Similarity=0.099 Sum_probs=19.6
Q ss_pred HHHHHHHHHhCCCCCeEEEEEcCCCCC
Q psy7399 10 GRVIQSLEEEGLLGNSLVVFISDNGGP 36 (107)
Q Consensus 10 g~l~~~l~~~g~~~nTlii~tsDHG~~ 36 (107)
..|-+.|++.|+.+++-||++.+.|..
T Consensus 89 ~~~~~~l~~~Gi~~~~~VVvY~~~g~~ 115 (320)
T PLN02723 89 EAFAAAVSALGIENKDGVVVYDGKGIF 115 (320)
T ss_pred HHHHHHHHHcCCCCCCEEEEEcCCCcc
Confidence 456667888899888777777766643
No 135
>cd03063 TRX_Fd_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NAD-dependent formate dehydrogenase (FDH) beta subunit; composed of proteins similar to the beta subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD to NADH. FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH beta subunit contains a NADH:ubiquinone oxidoreductase (Nuo) F domain C-terminal to a Fd-like domain without the active site cysteines. The absence of conserved metal-binding residues in the putative active site suggests that members of this subfamily have lost the ability to bind iron-sulfur clusters in the N-terminal Fd-like domain. The C-terminal NuoF domain is a component of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. NuoF contains one [4Fe-4S] c
Probab=35.84 E-value=92 Score=18.12 Aligned_cols=30 Identities=20% Similarity=0.157 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHhCCCCCeEEEEEcCCCCCC
Q psy7399 6 DESVGRVIQSLEEEGLLGNSLVVFISDNGGPT 37 (107)
Q Consensus 6 D~~ig~l~~~l~~~g~~~nTlii~tsDHG~~~ 37 (107)
++-...|.+.++++|+ +--|+-|+-+|...
T Consensus 17 ~~V~~al~~ei~~~gl--~v~v~~tGC~G~C~ 46 (92)
T cd03063 17 DEVAEAIEAEAAARGL--AATIVRNGSRGMYW 46 (92)
T ss_pred HHHHHHHHHHHHHcCC--eEEEEEecCceecC
Confidence 5566778888899988 56678889898765
No 136
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=34.97 E-value=53 Score=27.05 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHhCCCCCeEEEEEcCCCCC
Q psy7399 8 SVGRVIQSLEEEGLLGNSLVVFISDNGGP 36 (107)
Q Consensus 8 ~ig~l~~~l~~~g~~~nTlii~tsDHG~~ 36 (107)
...+.+++|++.|+ .++++|+||-..
T Consensus 554 ~a~~aI~~l~~aGI---~v~miTGD~~~t 579 (903)
T PRK15122 554 SAAPAIAALRENGV---AVKVLTGDNPIV 579 (903)
T ss_pred HHHHHHHHHHHCCC---eEEEECCCCHHH
Confidence 56788999999998 489999999754
No 137
>smart00187 INB Integrin beta subunits (N-terminal portion of extracellular region). Portion of beta integrins that lies N-terminal to their EGF-like repeats. Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Beta integrins are proposed to have a von Willebrand factor type-A "insert" or "I" -like domain (although this remains to be confirmed).
Probab=34.74 E-value=66 Score=24.23 Aligned_cols=32 Identities=25% Similarity=0.360 Sum_probs=23.1
Q ss_pred HHHHHHHH---HHhCCCCC--eEEEEEcCCCCCCCCC
Q psy7399 9 VGRVIQSL---EEEGLLGN--SLVVFISDNGGPTVDS 40 (107)
Q Consensus 9 ig~l~~~l---~~~g~~~n--Tlii~tsDHG~~~~~~ 40 (107)
+.-|++.. ++-|+.++ -++||++|-+.+..++
T Consensus 210 ~DAimQaaVC~~~IGWR~~a~rllv~~TDa~fH~AGD 246 (423)
T smart00187 210 FDAIMQAAVCTEQIGWREDARRLLVFSTDAGFHFAGD 246 (423)
T ss_pred HHHHHHHHhhccccccCCCceEEEEEEcCCCccccCC
Confidence 33455555 67788755 4999999999988653
No 138
>smart00475 53EXOc 5'-3' exonuclease.
Probab=34.68 E-value=71 Score=22.18 Aligned_cols=31 Identities=16% Similarity=0.252 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHhCCCCCeEEEEEcCCCCCC
Q psy7399 4 SLDESVGRVIQSLEEEGLLGNSLVVFISDNGGPT 37 (107)
Q Consensus 4 ~~D~~ig~l~~~l~~~g~~~nTlii~tsDHG~~~ 37 (107)
+.|..++.+..+..+.| ..++|+|+|.....
T Consensus 107 EADD~iatla~~~~~~g---~~~~IvS~DkDl~q 137 (259)
T smart00475 107 EADDVIATLAKKAEAEG---YEVRIVSGDKDLLQ 137 (259)
T ss_pred CHHHHHHHHHHHHHhCC---CeEEEEeCCCcHhh
Confidence 67999999988887765 36788999987653
No 139
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=34.30 E-value=1.1e+02 Score=18.39 Aligned_cols=27 Identities=11% Similarity=0.166 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHhCCCCCeEEEEEcCC
Q psy7399 7 ESVGRVIQSLEEEGLLGNSLVVFISDN 33 (107)
Q Consensus 7 ~~ig~l~~~l~~~g~~~nTlii~tsDH 33 (107)
..+.++++.+.+.|+..++-||++-++
T Consensus 69 ~~~~~~~~~~~~~~i~~~~~vvvyC~~ 95 (128)
T cd01520 69 GKLKRILNEAWEARLERDPKLLIYCAR 95 (128)
T ss_pred hhHHHHHHHHHHhccCCCCeEEEEeCC
Confidence 345566666665677766555555554
No 140
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=34.21 E-value=60 Score=22.12 Aligned_cols=23 Identities=17% Similarity=0.166 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhCCCCCeEEEEEcCCC
Q psy7399 9 VGRVIQSLEEEGLLGNSLVVFISDNG 34 (107)
Q Consensus 9 ig~l~~~l~~~g~~~nTlii~tsDHG 34 (107)
+..+++++++. ++++++.++|.=
T Consensus 26 l~~~i~~~~~~---~~~l~l~~GD~~ 48 (257)
T cd07408 26 LATYKKEMNKL---DNDLLVDAGDAI 48 (257)
T ss_pred HHHHHHHHHhc---CCEEEEeCCCcC
Confidence 56667777654 789999999964
No 141
>PF00245 Alk_phosphatase: Alkaline phosphatase; InterPro: IPR001952 This entry represents alkaline phosphatases (3.1.3.1 from EC) (ALP), which act as non-specific phosphomonoesterases to hydrolyse phosphate esters, optimally at high pH. The reaction mechanism involves the attack of a serine alkoxide on a phosphorus of the substrate to form a transient covalent enzyme-phosphate complex, followed by the hydrolysis of the serine phosphate. Alkaline phosphatases are found in all kingdoms of life, with the exception of some plants. Alkaline phosphatases are metalloenzymes that exist as a dimer, each monomer binding metal ions. The metal ions they carry can differ, although zinc and magnesium are the most common. For example, Escherichia coli alkaline phosphatase (encoded by phoA) requires the presence of two zinc ions bound at the M1 and M2 metal sites, and one magnesium ion bound at the M3 site []. However, alkaline phosphatases from Thermotoga maritima and Bacillus subtilis require cobalt for maximal activity []. In mammals, there are four alkaline phosphatase isozymes: placental, placental-like (germ cell), intestinal and tissue-nonspecific (liver/bone/kidney). All four isozymes are anchored to the outer surface of the plasma membrane by a covalently attached glycosylphosphatidylinositol (GPI) anchor []. Human alkaline phosphatases have four metal binding sites: two for zinc, one for magnesium, and one for calcium ion. Placental alkaline phosphatase (ALPP or PLAP) is highly polymorphic, with at least three common alleles []. Its activity is down-regulated by a number of effectors such as l-phenylalanine, 5'-AMP, and by p-nitrophenyl-phosphonate (PNPPate) []. The placental-like isozyme (ALPPL or PLAP-like) is elevated in germ cell tumours. The intestinal isozyme (ALPI or IAP) has the ability to detoxify lipopolysaccharide and prevent bacterial invasion across the gut mucosal barrier []. The tissue-nonspecific isozyme (ALPL) is, and may play a role in skeletal mineralisation. Defects in ALPL are a cause of hypophosphatasia, including infantile-type (OMIM:241500), childhood-type (OMIM:241510) and adult-type (OMIM:146300). Hhypophosphatasia is an inherited metabolic bone disease characterised by defective skeletal mineralisation []. This entry also contains the related enzyme streptomycin-6-phosphate phosphatase (3.1.3.39 from EC) (encoded by strK) from Streptomyces species. This enzyme is involved in the synthesis of the antibiotic streptomycin, specifically cleaving both streptomycin-6-phosphate and, more slowly, streptomycin-3-phosphate [].; GO: 0016791 phosphatase activity, 0008152 metabolic process; PDB: 1AJD_B 1ALH_B 2ANH_B 3BDF_A 1ELZ_B 1ELX_B 1B8J_B 2GA3_A 1ANJ_B 1Y6V_B ....
Probab=34.10 E-value=50 Score=24.71 Aligned_cols=8 Identities=13% Similarity=0.380 Sum_probs=3.1
Q ss_pred HHHHHHHh
Q psy7399 12 VIQSLEEE 19 (107)
Q Consensus 12 l~~~l~~~ 19 (107)
|++..|+.
T Consensus 89 i~e~Ak~~ 96 (421)
T PF00245_consen 89 ILELAKEA 96 (421)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 33333333
No 142
>COG3688 Predicted RNA-binding protein containing a PIN domain [General function prediction only]
Probab=33.42 E-value=83 Score=20.57 Aligned_cols=33 Identities=18% Similarity=0.260 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCeEEEEEcCCCCCC
Q psy7399 3 KSLDESVGRVIQSLEEEGLLGNSLVVFISDNGGPT 37 (107)
Q Consensus 3 ~~~D~~ig~l~~~l~~~g~~~nTlii~tsDHG~~~ 37 (107)
+..|..|.++...|+.. .-.-++|.|||.-+..
T Consensus 81 ETADs~IEr~~~el~~~--~t~~V~VaTSD~~EQ~ 113 (173)
T COG3688 81 ETADSFIERYVAELRNA--ATHQVIVATSDRAEQW 113 (173)
T ss_pred ccHHHHHHHHHHHHhcc--ccceEEEEeCchhhhh
Confidence 34689999999999832 2235899999987654
No 143
>cd02787 MopB_CT_ydeP The MopB_CT_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=33.25 E-value=64 Score=18.82 Aligned_cols=24 Identities=21% Similarity=0.185 Sum_probs=20.2
Q ss_pred HHHHHhCCCCCeEEEEEcCCCCCC
Q psy7399 14 QSLEEEGLLGNSLVVFISDNGGPT 37 (107)
Q Consensus 14 ~~l~~~g~~~nTlii~tsDHG~~~ 37 (107)
+..++.|+.+.-.|.+.|++|...
T Consensus 38 ~dA~~lgI~dGd~V~v~s~~G~i~ 61 (112)
T cd02787 38 DDIARLGLKAGDRVDLESAFGDGQ 61 (112)
T ss_pred HHHHHhCCCCCCEEEEEecCCCCe
Confidence 346788999999999999999764
No 144
>COG5012 Predicted cobalamin binding protein [General function prediction only]
Probab=33.22 E-value=67 Score=22.07 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhCCCCCeEEEEEc
Q psy7399 8 SVGRVIQSLEEEGLLGNSLVVFIS 31 (107)
Q Consensus 8 ~ig~l~~~l~~~g~~~nTlii~ts 31 (107)
...++++.|++.|+.++-++.+.+
T Consensus 171 ~~~~viE~L~eeGiRd~v~v~vGG 194 (227)
T COG5012 171 GMKDVIELLKEEGIRDKVIVMVGG 194 (227)
T ss_pred HHHHHHHHHHHcCCccCeEEeecC
Confidence 467899999999999887776543
No 145
>PRK02118 V-type ATP synthase subunit B; Provisional
Probab=33.18 E-value=62 Score=24.47 Aligned_cols=25 Identities=12% Similarity=0.222 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHhCCCCCeEEEEEc
Q psy7399 7 ESVGRVIQSLEEEGLLGNSLVVFIS 31 (107)
Q Consensus 7 ~~ig~l~~~l~~~g~~~nTlii~ts 31 (107)
+.+..|++.+++.|..++|++|+..
T Consensus 179 rE~~ef~~~~~~~~~l~rtvlv~~~ 203 (436)
T PRK02118 179 DDYLFFKDTFENAGALDRTVMFIHT 203 (436)
T ss_pred hHHHHHHHHHhhCCCcceEEEEEEC
Confidence 3567899999999999999997754
No 146
>KOG1348|consensus
Probab=32.88 E-value=38 Score=25.19 Aligned_cols=15 Identities=27% Similarity=0.886 Sum_probs=12.3
Q ss_pred CCeEEEEEcCCCCCC
Q psy7399 23 GNSLVVFISDNGGPT 37 (107)
Q Consensus 23 ~nTlii~tsDHG~~~ 37 (107)
++-++|+.+|||...
T Consensus 154 nDhiFiYytDHG~pG 168 (477)
T KOG1348|consen 154 NDHIFIYYTDHGGPG 168 (477)
T ss_pred CceEEEEEecCCCCc
Confidence 467899999999763
No 147
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=32.86 E-value=62 Score=26.52 Aligned_cols=26 Identities=27% Similarity=0.331 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHhCCCCCeEEEEEcCCCCC
Q psy7399 8 SVGRVIQSLEEEGLLGNSLVVFISDNGGP 36 (107)
Q Consensus 8 ~ig~l~~~l~~~g~~~nTlii~tsDHG~~ 36 (107)
...+.+++|++.|+ .++++|+||-..
T Consensus 519 ~~~~aI~~l~~aGI---~vvmiTGD~~~t 544 (867)
T TIGR01524 519 STKEAIAALFKNGI---NVKVLTGDNEIV 544 (867)
T ss_pred hHHHHHHHHHHCCC---EEEEEcCCCHHH
Confidence 46778999999998 489999999754
No 148
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=32.81 E-value=63 Score=25.79 Aligned_cols=26 Identities=23% Similarity=0.242 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHhCCCCCeEEEEEcCCCCC
Q psy7399 8 SVGRVIQSLEEEGLLGNSLVVFISDNGGP 36 (107)
Q Consensus 8 ~ig~l~~~l~~~g~~~nTlii~tsDHG~~ 36 (107)
.+.+.+++|++.|+. ++++|+||-..
T Consensus 445 ~a~e~I~~Lr~~GI~---vvMiTGDn~~T 470 (673)
T PRK14010 445 GLVERFRELREMGIE---TVMCTGDNELT 470 (673)
T ss_pred HHHHHHHHHHHCCCe---EEEECCCCHHH
Confidence 466789999999983 68999999754
No 149
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=32.78 E-value=60 Score=25.95 Aligned_cols=26 Identities=19% Similarity=0.284 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHhCCCCCeEEEEEcCCCCC
Q psy7399 8 SVGRVIQSLEEEGLLGNSLVVFISDNGGP 36 (107)
Q Consensus 8 ~ig~l~~~l~~~g~~~nTlii~tsDHG~~ 36 (107)
.+.+.+++|++.|+ .++++|+||-..
T Consensus 449 ~~~eai~~Lr~~GI---~vvMiTGDn~~T 474 (679)
T PRK01122 449 GIKERFAELRKMGI---KTVMITGDNPLT 474 (679)
T ss_pred hHHHHHHHHHHCCC---eEEEECCCCHHH
Confidence 46678899999998 378999999754
No 150
>PF12123 Amidase02_C: N-acetylmuramoyl-l-alanine amidase; InterPro: IPR021976 This domain is found in bacteria and viruses. This domain is about 50 amino acids in length. This domain is classified with the enzyme classification code 3.5.1.28 from EC. This domain is the C-terminal of the enzyme which hydrolyses the link between N-acetylmuramoyl residues and L-amino acid residues in certain cell-wall glycopeptides. ; PDB: 2L48_B.
Probab=32.72 E-value=66 Score=16.20 Aligned_cols=18 Identities=22% Similarity=0.359 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHhCCC
Q psy7399 5 LDESVGRVIQSLEEEGLL 22 (107)
Q Consensus 5 ~D~~ig~l~~~l~~~g~~ 22 (107)
-|.++.++-+.|+++|++
T Consensus 25 s~~~L~k~~~wld~rgWw 42 (45)
T PF12123_consen 25 SDAELDKFTAWLDERGWW 42 (45)
T ss_dssp -HHHHHHHHHHHHHTT--
T ss_pred CHHHHHHHHHHHHhcCcE
Confidence 478899999999999875
No 151
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=32.41 E-value=70 Score=24.30 Aligned_cols=27 Identities=26% Similarity=0.461 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHhCCCCCeEEEEE-cCC
Q psy7399 7 ESVGRVIQSLEEEGLLGNSLVVFI-SDN 33 (107)
Q Consensus 7 ~~ig~l~~~l~~~g~~~nTlii~t-sDH 33 (107)
+.+..|++.+++.+..++|+||+. ||.
T Consensus 186 rEv~efi~~~~~~~~l~rtvvv~atsd~ 213 (458)
T TIGR01041 186 EEANFFMKDFEETGALERAVVFLNLADD 213 (458)
T ss_pred hHHHHHHHHHHhcCCcceEEEEEECCCC
Confidence 467889999999999999988765 444
No 152
>PF07765 KIP1: KIP1-like protein; InterPro: IPR011684 This is a group of sequences found exclusively in plants. They are similar to kinase interacting protein 1 (KIP1), which has been found to interact with the kinase domain of PRK1, a receptor-like kinase []. This particular region contains two coiled-coils, which are described as motifs involved in protein-protein interactions []. It has also been suggested that the coiled-coils of the protein allow it to dimerise in vivo [].
Probab=32.25 E-value=50 Score=18.56 Aligned_cols=18 Identities=33% Similarity=0.630 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHHHHHHHh
Q psy7399 2 LKSLDESVGRVIQSLEEE 19 (107)
Q Consensus 2 i~~~D~~ig~l~~~l~~~ 19 (107)
++.||..+.+++..+++.
T Consensus 20 l~dmd~kvk~mlklieed 37 (74)
T PF07765_consen 20 LSDMDEKVKAMLKLIEED 37 (74)
T ss_pred HHHHHHHHHHHHHHhccC
Confidence 567899999998888764
No 153
>PF14883 GHL13: Hypothetical glycosyl hydrolase family 13
Probab=32.11 E-value=89 Score=22.35 Aligned_cols=29 Identities=17% Similarity=0.468 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCeEEE-EEcCC
Q psy7399 3 KSLDESVGRVIQSLEEEGLLGNSLVV-FISDN 33 (107)
Q Consensus 3 ~~~D~~ig~l~~~l~~~g~~~nTlii-~tsDH 33 (107)
...++.++++++++++.|. ||+++ ..+|.
T Consensus 13 ~q~~~nl~~l~~ri~~~~~--~tV~Lqaf~d~ 42 (294)
T PF14883_consen 13 AQQERNLDKLIQRIKDMGI--NTVYLQAFADP 42 (294)
T ss_pred HHHHHHHHHHHHHHHHcCC--CEEEEEeeeCC
Confidence 4578899999999999876 56665 44665
No 154
>PRK13367 protocatechuate 4,5-dioxygenase; Provisional
Probab=31.87 E-value=86 Score=23.61 Aligned_cols=32 Identities=22% Similarity=0.200 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHhCCCCCeEEEEEcCCCCCC
Q psy7399 4 SLDESVGRVIQSLEEEGLLGNSLVVFISDNGGPT 37 (107)
Q Consensus 4 ~~D~~ig~l~~~l~~~g~~~nTlii~tsDHG~~~ 37 (107)
.+.+.+..+-++|++. .-+.+|+|..||...+
T Consensus 32 ~v~~~~~~~r~~l~~~--~PDvvVv~~nDH~~~F 63 (420)
T PRK13367 32 PIFESFAPLRRWLEEK--KPDVLLYIFNDHVTSF 63 (420)
T ss_pred HHHHHHHHHHHHHHHh--CCCEEEEEccchhhhc
Confidence 4556677777777764 4578999999999876
No 155
>KOG1976|consensus
Probab=31.82 E-value=74 Score=23.14 Aligned_cols=31 Identities=26% Similarity=0.403 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHhCCCCCeEEEEEcCCCCCC
Q psy7399 6 DESVGRVIQSLEEEGLLGNSLVVFISDNGGPT 37 (107)
Q Consensus 6 D~~ig~l~~~l~~~g~~~nTlii~tsDHG~~~ 37 (107)
-++++.++++|.+.|+. |+.+++.+|--...
T Consensus 200 ~~al~~vL~el~~~~~~-~~~~fVfGdfNfrL 230 (391)
T KOG1976|consen 200 EQALEMVLKELDEEGLR-NDAIFVFGDFNFRL 230 (391)
T ss_pred HHHHHHHHHHHHhhccC-ceEEEEeccccccc
Confidence 36899999999999865 55677777765544
No 156
>cd07365 MhpB_like Subunit B of the Class III Extradiol ring-cleavage dioxygenase, 2,3-dihydroxyphenylpropionate 1,2-dioxygenase (MhpB), which catalyzes the oxidization and subsequent ring-opening of 2,3-dihydroxyphenylpropionate. 2,3-dihydroxyphenylpropionate 1,2-dioxygenase (MhpB) catalyzes the oxidization and subsequent ring-opening of 2,3-dihydroxyphenylpropionate, yielding the product 2-hydroxy-6-oxo-nona-2,4-diene 1,9-dicarboxylate. It is an essential enzyme in the beta-phenylpropionic degradation pathway, in which beta-phenylpropionic is first hydrolyzed to produce 2,3-dihydroxyphenylpropionate. The enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like class III enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the ca
Probab=31.81 E-value=1.2e+02 Score=21.78 Aligned_cols=28 Identities=11% Similarity=0.017 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHhCCCCCeEEEEEcCCCCC
Q psy7399 7 ESVGRVIQSLEEEGLLGNSLVVFISDNGGP 36 (107)
Q Consensus 7 ~~ig~l~~~l~~~g~~~nTlii~tsDHG~~ 36 (107)
+.+.++-++|++. .-+++|||+.||...
T Consensus 29 ~a~~~l~~~l~~~--~PD~iVIigphH~~~ 56 (310)
T cd07365 29 AAFAAARAFVAAF--DPELVVLFAPDHYNG 56 (310)
T ss_pred HHHHHHHHHHHHc--CCCEEEEEcCCcccc
Confidence 3444444555442 347999999999885
No 157
>KOG0371|consensus
Probab=31.63 E-value=58 Score=23.12 Aligned_cols=27 Identities=19% Similarity=0.283 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhCCCCCeEEEEEcCCC
Q psy7399 8 SVGRVIQSLEEEGLLGNSLVVFISDNG 34 (107)
Q Consensus 8 ~ig~l~~~l~~~g~~~nTlii~tsDHG 34 (107)
++..++|..|--|+..||-.+|.+|--
T Consensus 71 qf~dl~ELfkiGG~~pdtnylfmGDyv 97 (319)
T KOG0371|consen 71 QFHDLIELFKIGGLAPDTNYLFMGDYV 97 (319)
T ss_pred hHHHHHHHHHccCCCCCcceeeeeeec
Confidence 566788888889999999999999854
No 158
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=31.58 E-value=88 Score=19.27 Aligned_cols=23 Identities=9% Similarity=0.138 Sum_probs=16.6
Q ss_pred HHHHHHHHHhCCCCCeEEEEEcC
Q psy7399 10 GRVIQSLEEEGLLGNSLVVFISD 32 (107)
Q Consensus 10 g~l~~~l~~~g~~~nTlii~tsD 32 (107)
.+|-+.+++.|+..++-||++.+
T Consensus 81 ~~~~~~~~~~GI~~~~~vVvY~~ 103 (138)
T cd01445 81 AEFAAMFEAKGIDLDKHLIATDG 103 (138)
T ss_pred HHHHHHHHHcCCCCCCeEEEECC
Confidence 35667778889987777777754
No 159
>cd02778 MopB_CT_Thiosulfate-R-like The MopB_CT_Thiosulfate-R-like CD contains thiosulfate-, sulfur-, and polysulfide-reductases, and other related proteins. Thiosulfate reductase catalyzes the cleavage of sulfur-sulfur bonds in thiosulfate. Polysulfide reductase is a membrane-bound enzyme that catalyzes the reduction of polysulfide using either hydrogen or formate as the electron donor. Also included in this CD is the phenylacetyl-CoA:acceptor oxidoreductase, large subunit (PadB2), which has been characterized as a membrane-bound molybdenum-iron-sulfur enzyme involved in anaerobic metabolism of phenylalanine in the denitrifying bacterium Thauera aromatica. The MopB_CT_Thiosulfate-R-like CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=31.53 E-value=71 Score=18.82 Aligned_cols=24 Identities=21% Similarity=0.195 Sum_probs=19.6
Q ss_pred HHHHHhCCCCCeEEEEEcCCCCCC
Q psy7399 14 QSLEEEGLLGNSLVVFISDNGGPT 37 (107)
Q Consensus 14 ~~l~~~g~~~nTlii~tsDHG~~~ 37 (107)
+..++.|+.+.-.|.+++++|...
T Consensus 37 ~dA~~~gi~~Gd~V~v~s~~G~i~ 60 (123)
T cd02778 37 ETAARLGIKDGDRVEVSSARGKVT 60 (123)
T ss_pred HHHHHcCCCCCCEEEEEeCCCcEE
Confidence 346788999998999999999754
No 160
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=31.49 E-value=66 Score=25.89 Aligned_cols=25 Identities=12% Similarity=0.193 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHhCCCCCeEEEEEcCCCC
Q psy7399 8 SVGRVIQSLEEEGLLGNSLVVFISDNGG 35 (107)
Q Consensus 8 ~ig~l~~~l~~~g~~~nTlii~tsDHG~ 35 (107)
...+.+++|++.|+ .++++|+||-.
T Consensus 446 ~a~~aI~~l~~aGI---~v~miTGD~~~ 470 (755)
T TIGR01647 446 DTKETIERARHLGV---EVKMVTGDHLA 470 (755)
T ss_pred hHHHHHHHHHHCCC---eEEEECCCCHH
Confidence 46788999999998 48999999964
No 161
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=31.44 E-value=1.1e+02 Score=20.68 Aligned_cols=29 Identities=10% Similarity=0.171 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHhCCCCCeEEEEEcCCCC
Q psy7399 6 DESVGRVIQSLEEEGLLGNSLVVFISDNGG 35 (107)
Q Consensus 6 D~~ig~l~~~l~~~g~~~nTlii~tsDHG~ 35 (107)
|..+.++.+.|.+.. .+..+|.++|--|.
T Consensus 2 e~~~~~l~~~L~~~~-~~~~~v~I~G~~G~ 30 (287)
T PF00931_consen 2 EKEIEKLKDWLLDNS-NEVRVVAIVGMGGI 30 (287)
T ss_dssp HHHHHHHHHHHHTTT-TSSEEEEEEESTTS
T ss_pred HHHHHHHHHHhhCCC-CCeEEEEEEcCCcC
Confidence 678999999999865 66788889987774
No 162
>cd00508 MopB_CT_Fdh-Nap-like This CD includes formate dehydrogenases (Fdh) H and N; nitrate reductases, Nap and Nas; and other related proteins. Formate dehydrogenase H is a component of the anaerobic formate hydrogen lyase complex and catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons. Formate dehydrogenase N (alpha subunit) is the major electron donor to the bacterial nitrate respiratory chain and nitrate reductases, Nap and Nas, catalyze the reduction of nitrate to nitrite. This CD (MopB_CT_Fdh-Nap-like) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=31.38 E-value=60 Score=18.90 Aligned_cols=23 Identities=22% Similarity=0.238 Sum_probs=19.2
Q ss_pred HHHHhCCCCCeEEEEEcCCCCCC
Q psy7399 15 SLEEEGLLGNSLVVFISDNGGPT 37 (107)
Q Consensus 15 ~l~~~g~~~nTlii~tsDHG~~~ 37 (107)
..++.|+.+.-.|.+.+++|...
T Consensus 43 dA~~lgi~~Gd~V~v~~~~G~~~ 65 (120)
T cd00508 43 DAARLGIKDGDLVRVSSRRGSVV 65 (120)
T ss_pred HHHHcCCCCCCEEEEEeCCEEEE
Confidence 46788999999999999999643
No 163
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=31.14 E-value=1e+02 Score=20.41 Aligned_cols=29 Identities=14% Similarity=0.305 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCeEEEEEcCCC
Q psy7399 3 KSLDESVGRVIQSLEEEGLLGNSLVVFISDNG 34 (107)
Q Consensus 3 ~~~D~~ig~l~~~l~~~g~~~nTlii~tsDHG 34 (107)
+.+++.+.++++.+++.+. -+|++++|=-
T Consensus 18 ~~~~~~~~~i~~~~~~~~~---d~iv~~GDl~ 46 (214)
T cd07399 18 EVFDAQTDWIVDNAEALNI---AFVLHLGDIV 46 (214)
T ss_pred HHHHHHHHHHHHHHHHcCC---CEEEECCCcc
Confidence 3566777888888776543 4788888843
No 164
>PRK13372 pcmA protocatechuate 4,5-dioxygenase; Provisional
Probab=31.10 E-value=91 Score=23.68 Aligned_cols=32 Identities=13% Similarity=0.115 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHhCCCCCeEEEEEcCCCCCC
Q psy7399 4 SLDESVGRVIQSLEEEGLLGNSLVVFISDNGGPT 37 (107)
Q Consensus 4 ~~D~~ig~l~~~l~~~g~~~nTlii~tsDHG~~~ 37 (107)
.+.+.+.++-+.|++. .-+.+|||..||...+
T Consensus 179 ~v~~~~~~~r~~l~~~--~PDVvVi~~nDH~~~F 210 (444)
T PRK13372 179 KLFAGYDLSREWAKEH--LPDVIILVYNDHATAF 210 (444)
T ss_pred HHHHHHHHHHHHHHHh--CCCEEEEEccchhhhc
Confidence 3455566666677664 4578999999999876
No 165
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=30.96 E-value=50 Score=27.25 Aligned_cols=26 Identities=23% Similarity=0.389 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhCCCCCeEEEEEcCCCCC
Q psy7399 8 SVGRVIQSLEEEGLLGNSLVVFISDNGGP 36 (107)
Q Consensus 8 ~ig~l~~~l~~~g~~~nTlii~tsDHG~~ 36 (107)
.+..-++.|++.|+ .++++|+||-..
T Consensus 551 ~v~~aI~~l~~AGI---~v~MiTGD~~~T 576 (917)
T COG0474 551 DVKEAIEELREAGI---KVWMITGDHVET 576 (917)
T ss_pred cHHHHHHHHHHCCC---cEEEECCCCHHH
Confidence 45677889999998 589999999754
No 166
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=30.75 E-value=56 Score=26.30 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhCCCCCeEEEEEcCCCCC
Q psy7399 9 VGRVIQSLEEEGLLGNSLVVFISDNGGP 36 (107)
Q Consensus 9 ig~l~~~l~~~g~~~nTlii~tsDHG~~ 36 (107)
-.+.+++|++.|+. ++++|+||-..
T Consensus 542 a~~aI~~L~~~Gi~---~~mLTGDn~~~ 566 (713)
T COG2217 542 AKEAIAALKALGIK---VVMLTGDNRRT 566 (713)
T ss_pred HHHHHHHHHHCCCe---EEEEcCCCHHH
Confidence 35778999999986 88899999754
No 167
>PRK05244 Der GTPase activator; Provisional
Probab=30.75 E-value=82 Score=20.80 Aligned_cols=21 Identities=29% Similarity=0.442 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHhCCCC
Q psy7399 3 KSLDESVGRVIQSLEEEGLLG 23 (107)
Q Consensus 3 ~~~D~~ig~l~~~l~~~g~~~ 23 (107)
.|+|.++.|+=..+++.|+.+
T Consensus 128 ~yvD~~LdRie~LM~~LGI~~ 148 (177)
T PRK05244 128 KWVDEKLDRIDELMEKLGISD 148 (177)
T ss_pred HHHHHHHHHHHHHHHHhCCCc
Confidence 689999999999999999764
No 168
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=30.69 E-value=82 Score=24.01 Aligned_cols=25 Identities=20% Similarity=0.391 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHhCCCCCeEEEEEc
Q psy7399 7 ESVGRVIQSLEEEGLLGNSLVVFIS 31 (107)
Q Consensus 7 ~~ig~l~~~l~~~g~~~nTlii~ts 31 (107)
+.+..|++.+.+.+..++|+||+.+
T Consensus 186 rEv~efi~~~~~~~~l~rsvvV~at 210 (463)
T PRK09280 186 REGNDLYHEMKESGVLDKTALVFGQ 210 (463)
T ss_pred HHHHHHHHHHHhcCCcceeEEEEEC
Confidence 4578899999998999999888653
No 169
>COG4570 Rus Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=30.61 E-value=71 Score=20.03 Aligned_cols=19 Identities=21% Similarity=0.483 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHhCCC
Q psy7399 4 SLDESVGRVIQSLEEEGLL 22 (107)
Q Consensus 4 ~~D~~ig~l~~~l~~~g~~ 22 (107)
.+|..+.-++++|.+.|++
T Consensus 83 DlDNl~K~l~Daltk~g~~ 101 (132)
T COG4570 83 DLDNLLKALLDALTKAGVW 101 (132)
T ss_pred cHHHHHHHHHHHHhhccee
Confidence 4799999999999998866
No 170
>cd07956 Anticodon_Ia_Arg Anticodon-binding domain of arginyl tRNA synthetases. This domain is found in arginyl tRNA synthetases (ArgRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ArgRS catalyzes the transfer of arginine to the 3'-end of its tRNA.
Probab=30.60 E-value=48 Score=20.74 Aligned_cols=21 Identities=14% Similarity=-0.054 Sum_probs=17.8
Q ss_pred ehhhHHHHHHHHhCCCCCCCC
Q psy7399 87 HITDWLPTLYFIAGKEKNIDS 107 (107)
Q Consensus 87 ~~~Di~pTil~l~gi~~~~~~ 107 (107)
....++-+.++++|+++|..|
T Consensus 136 ~v~~vl~~~l~llgi~~~~~m 156 (156)
T cd07956 136 AARQVLANGLDLLGIEAPERM 156 (156)
T ss_pred HHHHHHHHHHHhcCCCccccC
Confidence 445889999999999999876
No 171
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=30.55 E-value=80 Score=24.07 Aligned_cols=24 Identities=13% Similarity=0.361 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHhCCCCCeEEEEE
Q psy7399 7 ESVGRVIQSLEEEGLLGNSLVVFI 30 (107)
Q Consensus 7 ~~ig~l~~~l~~~g~~~nTlii~t 30 (107)
+.+..|++.+++.+..++|++|+.
T Consensus 185 rEv~ef~~~~~~~~~l~rtvvV~a 208 (461)
T TIGR01039 185 REGNDLYHEMKESGVIDKTALVYG 208 (461)
T ss_pred hHHHHHHHHHHhcCCcceeEEEEE
Confidence 356788999998999999888775
No 172
>COG2968 Uncharacterized conserved protein [Function unknown]
Probab=30.52 E-value=76 Score=22.05 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCCe
Q psy7399 2 LKSLDESVGRVIQSLEEEGLLGNS 25 (107)
Q Consensus 2 i~~~D~~ig~l~~~l~~~g~~~nT 25 (107)
.+..++.+.+++.+||+.|+.++.
T Consensus 70 ~~~n~~r~~~V~aaLk~agi~~rd 93 (243)
T COG2968 70 KKANAERMAAVIAALKKAGIAKKD 93 (243)
T ss_pred HHHHHHHHHHHHHHHHHcCCcccc
Confidence 356788999999999999999875
No 173
>COG4974 XerD Site-specific recombinase XerD [DNA replication, recombination, and repair]
Probab=30.51 E-value=29 Score=24.78 Aligned_cols=26 Identities=23% Similarity=0.253 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHH-HhCCCCCeEEE
Q psy7399 3 KSLDESVGRVIQSLE-EEGLLGNSLVV 28 (107)
Q Consensus 3 ~~~D~~ig~l~~~l~-~~g~~~nTlii 28 (107)
...+..|.++++.|. ++|+..||+.-
T Consensus 3 ~~~~~~i~~fL~~l~~Er~ls~nTl~s 29 (300)
T COG4974 3 IMDEALIEQFLEYLWIERGLSANTLSS 29 (300)
T ss_pred chHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 346678899999997 88888888754
No 174
>PF11799 IMS_C: impB/mucB/samB family C-terminal domain; InterPro: IPR017961 This entry represents the little finger domain found in Y-family (lesion bypass) DNA polymerases. Y-family polymerases were originally known as UmuC/DinB/Rev1/Rad30 after each branch of the family. These enzymes are characterised by their low-fidelity synthesis on undamaged DNA templates and by their ability to traverse replication-blocking lesions. By contrast, high-fidelity polymerases (such as DNA polymerase III) are sensitive to distortions in the DNA template. As a result, Y-family polymerases can extend primer strands across DNA strand lesions that would otherwise stall replicative polymerases. To minimize mutations through their low fidelity synthesis, these enzymes are regulated, and are thought to interact with processivity factors, beta-clamp or proliferating cell nuclear antigen (PCNA), which are also essential for the function of replicative DNA polymerases []. Organisms can contain more than one Y-family polymerase, each with a unique DNA damage bypass and fidelity profile. For example, humans posses four Y-family polymerases: DNA polymerases kappa, iota, eta and Rev1. Y-family polymerases show no homology to DNA polymerases from the A-, B-, C-, D- or X-families []. The Y-family of DNA polymerases includes the following enzymes: Prokaryotic DNA polymerase IV (DinB) []. Archaeal DinB homologue DNA polymerase IV []. Eukaryotic DinB homologue DNA polymerase kappa []. Prokarytoic DNA repair proteins UmuC and UmuD []. Eukaryotic Rad30 homologues DNA polymerase eta and iota [, ]. Eukaryotic DNA repair protein Rev1 []. Human DNA polymerase kappa is a right-handed shaped molecule with palm, fingers, thumb, little finger and wrist subdomains []. This entry represents the little finger domain.; GO: 0003684 damaged DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006281 DNA repair; PDB: 3PZP_B 2OH2_B 2W7O_B 3IN5_B 1T94_A 2W7P_B 3GV8_B 3G6V_A 4EBC_A 3GV5_B ....
Probab=30.46 E-value=93 Score=18.08 Aligned_cols=29 Identities=21% Similarity=0.338 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCeEEEEEc
Q psy7399 3 KSLDESVGRVIQSLEEEGLLGNSLVVFIS 31 (107)
Q Consensus 3 ~~~D~~ig~l~~~l~~~g~~~nTlii~ts 31 (107)
..+.....++..+|++.+..-+|+.+...
T Consensus 32 ~~l~~l~~~l~~rL~~~~~~~~~i~l~l~ 60 (127)
T PF11799_consen 32 EWLRELAEELAERLRERGLAARTITLKLR 60 (127)
T ss_dssp HHHHHHHHHHHHHHHHCTEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhhCcCCceEEEEEE
Confidence 34566777888888999999999888776
No 175
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=30.39 E-value=84 Score=21.46 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhCCCCCeEEEEEcCCC
Q psy7399 8 SVGRVIQSLEEEGLLGNSLVVFISDNG 34 (107)
Q Consensus 8 ~ig~l~~~l~~~g~~~nTlii~tsDHG 34 (107)
.+..++++++++ ..+++++.++|.=
T Consensus 25 rl~~~i~~~r~~--~~~~l~l~~GD~~ 49 (257)
T cd07406 25 RFATLRKQLRKE--NPNTLVLFSGDVL 49 (257)
T ss_pred HHHHHHHHHHhc--CCCEEEEECCCcc
Confidence 456777777765 3689999999964
No 176
>cd07372 2A5CPDO_B The beta subunit of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO), catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active 2A5CPDO enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. The alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication. This model describes the beta subunit, which contains a putative metal binding site with two conserved histidines; these residues are equivalent to two out of three Fe(II) bindin
Probab=30.34 E-value=1.2e+02 Score=21.52 Aligned_cols=26 Identities=23% Similarity=0.196 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHhCCCCCeEEEEEcC
Q psy7399 5 LDESVGRVIQSLEEEGLLGNSLVVFISD 32 (107)
Q Consensus 5 ~D~~ig~l~~~l~~~g~~~nTlii~tsD 32 (107)
+.+.+.++-+++++.+ -+|+|||+++
T Consensus 35 ~~~a~~~~~~~i~~~~--Pd~IVViSpH 60 (294)
T cd07372 35 LRWAYERARESIEALK--PDVLLVHSPH 60 (294)
T ss_pred HHHHHHHHHHHHHHcC--CCEEEEECCC
Confidence 5567777778887654 5687777766
No 177
>KOG2756|consensus
Probab=30.29 E-value=80 Score=22.63 Aligned_cols=31 Identities=23% Similarity=0.261 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHh-CCCCCeEEEEEcCCCCC
Q psy7399 6 DESVGRVIQSLEEE-GLLGNSLVVFISDNGGP 36 (107)
Q Consensus 6 D~~ig~l~~~l~~~-g~~~nTlii~tsDHG~~ 36 (107)
|++++..+++++|. ..+-|..|||.+|--..
T Consensus 224 ~~qF~~~~~k~~EaIe~lPnA~ViFGGD~Nlr 255 (349)
T KOG2756|consen 224 MNQFKMVLKKMQEAIESLPNATVIFGGDTNLR 255 (349)
T ss_pred HHHHHHHHHHHHHHHHhCCCceEEEcCcccch
Confidence 66777777777764 34589999999996544
No 178
>cd02786 MopB_CT_3 The MopB_CT_3 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=30.25 E-value=69 Score=18.70 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=19.4
Q ss_pred HHHHHhCCCCCeEEEEEcCCCCCC
Q psy7399 14 QSLEEEGLLGNSLVVFISDNGGPT 37 (107)
Q Consensus 14 ~~l~~~g~~~nTlii~tsDHG~~~ 37 (107)
+..++.|+.+.-.|.+.|++|...
T Consensus 38 ~dA~~lgi~~Gd~V~v~s~~G~~~ 61 (116)
T cd02786 38 ADAAARGIADGDLVVVFNDRGSVT 61 (116)
T ss_pred HHHHHcCCCCCCEEEEEcCCeEEE
Confidence 345778999888999999999754
No 179
>COG3078 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.24 E-value=90 Score=20.10 Aligned_cols=21 Identities=24% Similarity=0.313 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHhCCCC
Q psy7399 3 KSLDESVGRVIQSLEEEGLLG 23 (107)
Q Consensus 3 ~~~D~~ig~l~~~l~~~g~~~ 23 (107)
.|+|..+.+|-+.+++.|+.+
T Consensus 129 ~~VD~~LDRI~~LMe~LGl~~ 149 (169)
T COG3078 129 QWVDAKLDRIDELMEKLGLSY 149 (169)
T ss_pred HHHHHHHHHHHHHHHHhCCcc
Confidence 588999999999999998763
No 180
>PRK14976 5'-3' exonuclease; Provisional
Probab=30.22 E-value=96 Score=21.82 Aligned_cols=31 Identities=16% Similarity=0.364 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHhCCCCCeEEEEEcCCCCCC
Q psy7399 4 SLDESVGRVIQSLEEEGLLGNSLVVFISDNGGPT 37 (107)
Q Consensus 4 ~~D~~ig~l~~~l~~~g~~~nTlii~tsDHG~~~ 37 (107)
+.|..++.+..+..+.| ..++|+|+|-....
T Consensus 113 EADDviatla~~~~~~g---~~v~IvS~DkDl~q 143 (281)
T PRK14976 113 EADDLIGSLAKKLSKQN---ITVLIYSSDKDLLQ 143 (281)
T ss_pred CHHHHHHHHHHHHHHCC---CeEEEEeCCCCcCc
Confidence 57999999999888776 35788999987654
No 181
>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain. This family includes the bacterial enzyme UshA, and related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich
Probab=30.09 E-value=84 Score=21.04 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHhCCCCCeEEEEEcCC
Q psy7399 8 SVGRVIQSLEEEGLLGNSLVVFISDN 33 (107)
Q Consensus 8 ~ig~l~~~l~~~g~~~nTlii~tsDH 33 (107)
.+.+++++++++ ..+++++.++|.
T Consensus 24 ~l~~~v~~~~~~--~~~~l~v~~GD~ 47 (252)
T cd00845 24 RLATLIKEERAE--NENTLLLDAGDN 47 (252)
T ss_pred HHHHHHHHHHhc--CCCeEEEeCCcc
Confidence 345667777665 468999999986
No 182
>PF11121 DUF2639: Protein of unknown function (DUF2639); InterPro: IPR022580 This family is conserved in the Bacillaceae family. Several members are named as being YflJ, but the function is not known.
Probab=30.07 E-value=49 Score=16.21 Aligned_cols=13 Identities=23% Similarity=0.501 Sum_probs=10.0
Q ss_pred HHHHHHHHHhCCC
Q psy7399 10 GRVIQSLEEEGLL 22 (107)
Q Consensus 10 g~l~~~l~~~g~~ 22 (107)
|-+++.||+.|+.
T Consensus 6 Gw~V~eLKk~GI~ 18 (40)
T PF11121_consen 6 GWYVKELKKLGIR 18 (40)
T ss_pred hHHHHHHHHhCcc
Confidence 5678888888864
No 183
>PRK13427 F0F1 ATP synthase subunit gamma; Provisional
Probab=30.00 E-value=37 Score=23.87 Aligned_cols=12 Identities=17% Similarity=0.304 Sum_probs=10.6
Q ss_pred EEEEEcCCCCCC
Q psy7399 26 LVVFISDNGGPT 37 (107)
Q Consensus 26 lii~tsDHG~~~ 37 (107)
+|+|+||.|.+.
T Consensus 79 ~ivitSDrGLcG 90 (289)
T PRK13427 79 LLIITANRGLCG 90 (289)
T ss_pred EEEEeCCCCccc
Confidence 789999999875
No 184
>PRK13425 F0F1 ATP synthase subunit gamma; Provisional
Probab=29.91 E-value=40 Score=23.75 Aligned_cols=12 Identities=25% Similarity=0.343 Sum_probs=10.6
Q ss_pred EEEEEcCCCCCC
Q psy7399 26 LVVFISDNGGPT 37 (107)
Q Consensus 26 lii~tsDHG~~~ 37 (107)
+|+|+||.|-+.
T Consensus 79 ~ivitSDrGLCG 90 (291)
T PRK13425 79 VILITSDRGLCG 90 (291)
T ss_pred EEEEeCCCcccc
Confidence 789999999875
No 185
>TIGR03395 sphingomy sphingomyelin phosphodiesterase. Members of this family are bacterial proteins that act as sphingomyelin phosphodiesterase (EC 3.1.4.12), also called sphingomyelinase. Some members of this family have been shown to act as hemolysins.
Probab=29.25 E-value=89 Score=21.85 Aligned_cols=31 Identities=6% Similarity=0.119 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHhCCCCCeEEEEEcCCCCCC
Q psy7399 7 ESVGRVIQSLEEEGLLGNSLVVFISDNGGPT 37 (107)
Q Consensus 7 ~~ig~l~~~l~~~g~~~nTlii~tsDHG~~~ 37 (107)
+|+..|.+.+++.....+--+|+++|--...
T Consensus 160 ~Q~~~i~~~i~~~~~~~~~pvIl~GDfN~~~ 190 (283)
T TIGR03395 160 NQLNEIQDFIDSKNIPKDETVLIGGDLNVNK 190 (283)
T ss_pred HHHHHHHHHHhhccCCCCceEEEEeeCCCCC
Confidence 3677778888765555566689999977654
No 186
>cd02789 MopB_CT_FmdC-FwdD The MopB_FmdC-FwdD CD includes the C-terminus of subunit C of molybdenum formylmethanofuran dehydrogenase (FmdC) and subunit D of tungsten formylmethanofuran dehydrogenase (FwdD), and other related proteins. Formylmethanofuran dehydrogenase catalyzes the first step in methane formation from CO2 in methanogenic archaea and some eubacteria. Members of this CD belong to the molybdopterin_binding superfamily of proteins. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=29.08 E-value=69 Score=18.74 Aligned_cols=24 Identities=17% Similarity=0.072 Sum_probs=19.4
Q ss_pred HHHHHhCCCCCeEEEEEcCCCCCC
Q psy7399 14 QSLEEEGLLGNSLVVFISDNGGPT 37 (107)
Q Consensus 14 ~~l~~~g~~~nTlii~tsDHG~~~ 37 (107)
+.+++.|+.+.-.|.+.+++|...
T Consensus 38 ~dA~~lgi~~Gd~V~v~~~~G~v~ 61 (106)
T cd02789 38 EDYKLLGKPEGDKVKVTSEFGEVV 61 (106)
T ss_pred HHHHHcCCCCCCEEEEEcCCEEEE
Confidence 346788999888999999998653
No 187
>PRK10016 DNA gyrase inhibitor; Provisional
Probab=29.03 E-value=1.5e+02 Score=18.37 Aligned_cols=30 Identities=10% Similarity=0.245 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHhCCCCCeEEEEEcCCC
Q psy7399 5 LDESVGRVIQSLEEEGLLGNSLVVFISDNG 34 (107)
Q Consensus 5 ~D~~ig~l~~~l~~~g~~~nTlii~tsDHG 34 (107)
+++.+++|++.++++|+.....+.+.-|+-
T Consensus 26 ~~~~~~~L~~~~~~~~l~~~~~~~i~~D~p 55 (156)
T PRK10016 26 VKQGFEQLMMWVDSHNIVPKEWVAVYYDNP 55 (156)
T ss_pred HHHHHHHHHHHHHHcCCCCCcEEEEECCCC
Confidence 678899999999999987445666777775
No 188
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=28.93 E-value=86 Score=23.81 Aligned_cols=25 Identities=24% Similarity=0.462 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHhCCCCCeEEEEEc
Q psy7399 7 ESVGRVIQSLEEEGLLGNSLVVFIS 31 (107)
Q Consensus 7 ~~ig~l~~~l~~~g~~~nTlii~ts 31 (107)
+.+..+++.+++.+..++|++|+.+
T Consensus 180 rEv~e~~~~~~~~~~l~rtvvv~~t 204 (449)
T TIGR03305 180 REGEELYREMKEAGVLDNTVMVFGQ 204 (449)
T ss_pred HHHHHHHHHHhhccccceEEEEEeC
Confidence 4567889999999999999888764
No 189
>PF04852 DUF640: Protein of unknown function (DUF640); InterPro: IPR006936 This conserved region is found in plant proteins including the resistance protein-like protein (O49468 from SWISSPROT).
Probab=28.89 E-value=68 Score=20.08 Aligned_cols=19 Identities=42% Similarity=0.587 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHhCCC
Q psy7399 4 SLDESVGRVIQSLEEEGLL 22 (107)
Q Consensus 4 ~~D~~ig~l~~~l~~~g~~ 22 (107)
.+|..||+|-...++.|-.
T Consensus 93 SlDalIGrLraafee~Gg~ 111 (132)
T PF04852_consen 93 SLDALIGRLRAAFEEHGGH 111 (132)
T ss_pred cHHHHHHHHHHHHHHhCCC
Confidence 4799999999999988743
No 190
>PF14136 DUF4303: Domain of unknown function (DUF4303)
Probab=28.64 E-value=1.4e+02 Score=18.57 Aligned_cols=26 Identities=35% Similarity=0.675 Sum_probs=15.3
Q ss_pred HHHHHHHHHHhCCCCCe------EEEEEcCCC
Q psy7399 9 VGRVIQSLEEEGLLGNS------LVVFISDNG 34 (107)
Q Consensus 9 ig~l~~~l~~~g~~~nT------lii~tsDHG 34 (107)
+-+.|.+|++.|.+.+- ++|.++|+=
T Consensus 108 ~~~aL~~l~~eg~f~~~~~~~i~~~v~i~d~d 139 (155)
T PF14136_consen 108 MVEALKQLDQEGFFGNGKREDIFFFVSISDDD 139 (155)
T ss_pred HHHHHHHHHHhcccCCCCccceEEEEEecCch
Confidence 34556667777877553 345556553
No 191
>PF04666 Glyco_transf_54: N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region; InterPro: IPR006759 The complex-type of oligosaccharides are synthesised through elongation by glycosyltransferases after trimming of the precursor oligosaccharides transferred to proteins in the endoplasmic reticulum. N-Acetylglucosaminyltransferases (GnTs) take part in the formation of branches in the biosynthesis of complex-type sugar chains. In vertebrates, six GnTs, designated as GnT-I to -VI, which catalyse the transfer of GlcNAc to the core mannose residues of Asn-linked sugar chains, have been identified. GnT-IV (2.4.1.145 from EC) catalyzes the transfer of GlcNAc from UDP-GlcNAc to the GlcNAc1-2Man1-3 arm of core oligosaccharide [Gn2(22)core oligosaccharide] and forms a GlcNAc1-4(GlcNAc1-2)Man1-3 structure on the core oligosaccharide (Gn3(2,4,2)core oligosaccharide). In some members the conserved region occupies all but the very N-terminal, where there is a signal sequence on all members. For other members the conserved region does not occupy the entire protein but is still to the N-terminal end of the protein [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=28.52 E-value=56 Score=23.28 Aligned_cols=33 Identities=18% Similarity=0.285 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCeEEEEEcCCCC
Q psy7399 3 KSLDESVGRVIQSLEEEGLLGNSLVVFISDNGG 35 (107)
Q Consensus 3 ~~~D~~ig~l~~~l~~~g~~~nTlii~tsDHG~ 35 (107)
.|+..-|+.|++.|......+=.+||+.+|--.
T Consensus 67 sYL~~TL~SLl~~ls~~Er~~i~IvVllAd~Dp 99 (297)
T PF04666_consen 67 SYLLDTLASLLDGLSPEERKDIVIVVLLADTDP 99 (297)
T ss_pred chHHHHHHHHHHhCCHHHhcCeEEEEEecCCCh
Confidence 578889999999998776667778888998654
No 192
>smart00836 DALR_1 DALR anticodon binding domain. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids PUBMED:10447505.
Probab=28.51 E-value=54 Score=19.36 Aligned_cols=21 Identities=10% Similarity=-0.026 Sum_probs=16.8
Q ss_pred ehhhHHHHHHHHhCCCCCCCC
Q psy7399 87 HITDWLPTLYFIAGKEKNIDS 107 (107)
Q Consensus 87 ~~~Di~pTil~l~gi~~~~~~ 107 (107)
....++-.+++++|++++..|
T Consensus 102 ~~~~~l~~~~~llgi~~~~~m 122 (122)
T smart00836 102 AVRQVLANGLRLLGISAPERM 122 (122)
T ss_pred HHHHHHHHHHHHcCCCccccC
Confidence 344688889999999998765
No 193
>COG3581 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.50 E-value=93 Score=23.34 Aligned_cols=30 Identities=20% Similarity=0.360 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhCCC-CCeEEEEEcCCCCCC
Q psy7399 8 SVGRVIQSLEEEGLL-GNSLVVFISDNGGPT 37 (107)
Q Consensus 8 ~ig~l~~~l~~~g~~-~nTlii~tsDHG~~~ 37 (107)
.+|++++++++-+.. +|..+++|+-.|...
T Consensus 55 tiG~lid~~~~g~~d~~n~~vlmt~TgGpCR 85 (420)
T COG3581 55 TIGQLIDAIESGEYDIENDAVLMTQTGGPCR 85 (420)
T ss_pred hHHHHHHHHHhCCccccccEEEEecCCCCcc
Confidence 489999999986544 567777888666554
No 194
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=28.35 E-value=1.1e+02 Score=20.10 Aligned_cols=24 Identities=17% Similarity=0.158 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhCCCCCeEEEEEc
Q psy7399 8 SVGRVIQSLEEEGLLGNSLVVFIS 31 (107)
Q Consensus 8 ~ig~l~~~l~~~g~~~nTlii~ts 31 (107)
.+.++++.|++.|..++..|++.+
T Consensus 151 ~~~~~i~~l~~~~~~~~v~i~vGG 174 (197)
T TIGR02370 151 GQKDINDKLKEEGYRDSVKFMVGG 174 (197)
T ss_pred HHHHHHHHHHHcCCCCCCEEEEEC
Confidence 468999999999998888777765
No 195
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=28.02 E-value=80 Score=17.84 Aligned_cols=25 Identities=8% Similarity=0.028 Sum_probs=15.0
Q ss_pred HHHHHHHHhCCCCCeEEEEEcCCCC
Q psy7399 11 RVIQSLEEEGLLGNSLVVFISDNGG 35 (107)
Q Consensus 11 ~l~~~l~~~g~~~nTlii~tsDHG~ 35 (107)
.|.+.++..+..+++-||+....|.
T Consensus 53 ~~~~~~~~~~~~~~~~ivv~c~~g~ 77 (106)
T cd01519 53 EFEKKYGFPKPSKDKELIFYCKAGV 77 (106)
T ss_pred HHHHHhcccCCCCCCeEEEECCCcH
Confidence 4455555566665666666666664
No 196
>PRK13422 F0F1 ATP synthase subunit gamma; Provisional
Probab=27.88 E-value=40 Score=23.81 Aligned_cols=12 Identities=25% Similarity=0.196 Sum_probs=10.6
Q ss_pred EEEEEcCCCCCC
Q psy7399 26 LVVFISDNGGPT 37 (107)
Q Consensus 26 lii~tsDHG~~~ 37 (107)
+|+|+||.|-+.
T Consensus 78 ~IvitSDrGLCG 89 (298)
T PRK13422 78 YIVTSTDRGLCG 89 (298)
T ss_pred EEEEeCCccccc
Confidence 799999999875
No 197
>TIGR00109 hemH ferrochelatase. Human ferrochelatase, found at the mitochondrial inner membrane inner surface, was shown in an active recombinant form to be a homodimer. This contrasts to an earlier finding by gel filtration that overexpressed E. coli ferrochelatase runs as a monomer.
Probab=27.88 E-value=1.5e+02 Score=21.16 Aligned_cols=33 Identities=18% Similarity=0.252 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCeEEEEEcCCCCC
Q psy7399 3 KSLDESVGRVIQSLEEEGLLGNSLVVFISDNGGP 36 (107)
Q Consensus 3 ~~~D~~ig~l~~~l~~~g~~~nTlii~tsDHG~~ 36 (107)
.+++....++.+.+++.+..+++.+ +.|=||-.
T Consensus 167 ~yi~a~~~~I~~~l~~~~~~~~~~l-lfSaHglP 199 (322)
T TIGR00109 167 KYIKALADSIKETLASFPEPDNAVL-LFSAHGLP 199 (322)
T ss_pred HHHHHHHHHHHHHHHhcCCcCCcEE-EEeCCCCc
Confidence 3566677777777766544455554 45557765
No 198
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=27.76 E-value=76 Score=26.23 Aligned_cols=26 Identities=19% Similarity=0.339 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhCCCCCeEEEEEcCCCCC
Q psy7399 8 SVGRVIQSLEEEGLLGNSLVVFISDNGGP 36 (107)
Q Consensus 8 ~ig~l~~~l~~~g~~~nTlii~tsDHG~~ 36 (107)
.+.+.+++|++.|+ .++++|+||-..
T Consensus 583 ~~~~aI~~l~~aGI---~v~miTGD~~~t 608 (941)
T TIGR01517 583 GVREAVQECQRAGI---TVRMVTGDNIDT 608 (941)
T ss_pred hHHHHHHHHHHCCC---EEEEECCCChHH
Confidence 56778999999998 489999999654
No 199
>PRK13426 F0F1 ATP synthase subunit gamma; Provisional
Probab=27.67 E-value=40 Score=23.73 Aligned_cols=12 Identities=33% Similarity=0.321 Sum_probs=10.5
Q ss_pred EEEEEcCCCCCC
Q psy7399 26 LVVFISDNGGPT 37 (107)
Q Consensus 26 lii~tsDHG~~~ 37 (107)
+|+|+||.|.+.
T Consensus 78 ~IvitSDrGLcG 89 (291)
T PRK13426 78 IVVFSSNTSLCG 89 (291)
T ss_pred EEEEeCCCcccc
Confidence 799999999875
No 200
>PF03975 CheD: CheD chemotactic sensory transduction; InterPro: IPR005659 CheD deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs). CheD-mediated MCP deamidation is required for productive communication of the conformational signals of the chemoreceptors to the cheA kinase []. CheC is a CheY-P phosphatase (CheY controls flagellar rotation and is activated by phosphorylation). The activity of CheC is enhanced by its interaction with CheD, forming a CheC-CheD heterodimer. It is suggested that CheC exerts its effect on MCP methylation in Bacillus subtilis by controlling the binding of CheD to the MCPs [].; GO: 0050568 protein-glutamine glutaminase activity, 0006935 chemotaxis; PDB: 2F9Z_D.
Probab=27.64 E-value=44 Score=20.04 Aligned_cols=26 Identities=15% Similarity=0.263 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCeEEE
Q psy7399 3 KSLDESVGRVIQSLEEEGLLGNSLVV 28 (107)
Q Consensus 3 ~~~D~~ig~l~~~l~~~g~~~nTlii 28 (107)
+|.|..+..+++.+.+.|....-+.+
T Consensus 17 rY~d~ai~~ll~~m~~~Ga~~~~l~a 42 (114)
T PF03975_consen 17 RYGDTAIELLLDEMEKRGARPSRLEA 42 (114)
T ss_dssp CBHHHHHHHHHHHHHTTT--GGG-EE
T ss_pred cCHHHHHHHHHHHHHHcCCCHHHeEE
Confidence 58899999999999999876554444
No 201
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=27.58 E-value=95 Score=23.20 Aligned_cols=25 Identities=28% Similarity=0.284 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHhCCCCCeEEEEEc
Q psy7399 7 ESVGRVIQSLEEEGLLGNSLVVFIS 31 (107)
Q Consensus 7 ~~ig~l~~~l~~~g~~~nTlii~ts 31 (107)
+.+.++++.+++.+..++|++|+.+
T Consensus 176 ~ev~e~~~~~~~~~~~~~tvvv~~t 200 (411)
T TIGR03496 176 REVKEFIEDILGEEGLARSVVVAAT 200 (411)
T ss_pred HHHHHHHHHHhhCCCcceEEEEEEC
Confidence 4678889999999999999888764
No 202
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=27.53 E-value=87 Score=23.84 Aligned_cols=25 Identities=16% Similarity=0.388 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHhCCCCCeEEEEEc
Q psy7399 7 ESVGRVIQSLEEEGLLGNSLVVFIS 31 (107)
Q Consensus 7 ~~ig~l~~~l~~~g~~~nTlii~ts 31 (107)
+.+..|++.+++.+..++|++|+.+
T Consensus 185 rEv~ef~~~~~~~~~l~rsvvv~at 209 (461)
T PRK12597 185 REGHELYHEMKESGVLDKTVMVYGQ 209 (461)
T ss_pred HHHHHHHHHHHhcCCcceeEEEecC
Confidence 5678899999999999999887654
No 203
>cd02783 MopB_CT_2 The MopB_CT_2 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=27.48 E-value=76 Score=20.02 Aligned_cols=24 Identities=25% Similarity=0.232 Sum_probs=20.1
Q ss_pred HHHHHhCCCCCeEEEEEcCCCCCC
Q psy7399 14 QSLEEEGLLGNSLVVFISDNGGPT 37 (107)
Q Consensus 14 ~~l~~~g~~~nTlii~tsDHG~~~ 37 (107)
+..++.|+.+.-.|.+.|++|...
T Consensus 39 ~dA~~~GI~dGd~V~v~s~~G~~~ 62 (156)
T cd02783 39 KTAKELGIKDGDWVWVESVNGRVK 62 (156)
T ss_pred HHHHHcCCCCCCEEEEEcCCeeEE
Confidence 456788999999999999999753
No 204
>cd07320 Extradiol_Dioxygenase_3B_like Subunit B of Class III Extradiol ring-cleavage dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site of the aromatic ring. Intradiol enzymes cleave the aromatic ring between two hydroxyl groups, whereas extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Extradiol dioxygenases can be further divided into three classes. Class I and II enzymes are evolutionary related and show sequence similarity, with the two-domain class II enzymes evolving from the class I enzyme through gene duplication. Class III enzymes are different in sequence and structure and usually have two subunits, designated A and B. This model represents the catalytic subunit B of extradiol dioxygenase class
Probab=27.26 E-value=1.1e+02 Score=20.69 Aligned_cols=27 Identities=22% Similarity=0.089 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHhCCCCCeEEEEEcCCCC
Q psy7399 8 SVGRVIQSLEEEGLLGNSLVVFISDNGG 35 (107)
Q Consensus 8 ~ig~l~~~l~~~g~~~nTlii~tsDHG~ 35 (107)
.+|+.+..+.+. ..++++||.+||--.
T Consensus 145 ~lG~aL~~~~~~-~~~~vliI~SGdlsH 171 (260)
T cd07320 145 EFGKAIRAAVEP-SDLRVHVVASGDLSH 171 (260)
T ss_pred HHHHHHHHHHHh-cCCcEEEEEeCcccc
Confidence 577888777653 346788888887443
No 205
>PF02698 DUF218: DUF218 domain; InterPro: IPR003848 This domain of unknown function is found in several uncharacterised proteins.; PDB: 3CA8_A.
Probab=27.22 E-value=1e+02 Score=18.99 Aligned_cols=25 Identities=24% Similarity=0.276 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHhCCCCCeEEEEEcC
Q psy7399 6 DESVGRVIQSLEEEGLLGNSLVVFISD 32 (107)
Q Consensus 6 D~~ig~l~~~l~~~g~~~nTlii~tsD 32 (107)
-+.+....+.+++.|+ ++++++|++
T Consensus 83 ~ena~~~~~~~~~~~~--~~iilVT~~ 107 (155)
T PF02698_consen 83 YENARFSKRLLKERGW--QSIILVTSP 107 (155)
T ss_dssp HHHHHHHHHHHHT-SS--S-EEEE--C
T ss_pred HHHHHHHHHHHHhhcC--CeEEEECCH
Confidence 3455667777888877 678887775
No 206
>cd00419 Ferrochelatase_C Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=26.83 E-value=96 Score=19.17 Aligned_cols=28 Identities=32% Similarity=0.523 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhCCCCCeEEE---EEcCCCCCC
Q psy7399 9 VGRVIQSLEEEGLLGNSLVV---FISDNGGPT 37 (107)
Q Consensus 9 ig~l~~~l~~~g~~~nTlii---~tsDHG~~~ 37 (107)
+...+++|.+.|. ++-+|+ |++||=+..
T Consensus 79 ~~~~l~~l~~~G~-~~i~v~p~gF~~D~~Etl 109 (135)
T cd00419 79 TDDALEELAKEGV-KNVVVVPIGFVSDHLETL 109 (135)
T ss_pred HHHHHHHHHHcCC-CeEEEECCccccccHHHH
Confidence 4556777777775 444444 888887765
No 207
>PF12213 Dpoe2NT: DNA polymerases epsilon N terminal; InterPro: IPR024639 This domain is found in the N-terminal of DNA polymerase epsilon subunit B proteins. It contains a single completely conserved phenylalanine residue that may be functionally important. It forms a primarily alpha helical structure in which four helices are arranged in two hairpins with connecting loops containing beta strands which form a short parallel sheet. DNA polymerase epsilon is required in DNA replication for synthesis of the leading strand. The N-terminal domain has close structural relation to AAA+ protein C-terminal domains [].; PDB: 2V6Z_M.
Probab=26.83 E-value=74 Score=17.68 Aligned_cols=22 Identities=9% Similarity=0.305 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHhCCCCCe
Q psy7399 4 SLDESVGRVIQSLEEEGLLGNS 25 (107)
Q Consensus 4 ~~D~~ig~l~~~l~~~g~~~nT 25 (107)
..++.+.++++.++++.+-.+.
T Consensus 39 e~e~~l~~Ii~~v~kq~Lss~~ 60 (73)
T PF12213_consen 39 EREDWLDKIIDAVQKQPLSSSI 60 (73)
T ss_dssp THHHHHHHHHHHHTTS--SSSE
T ss_pred HHHHHHHHHHHHHhcCCCCCCc
Confidence 3577899999999998876554
No 208
>cd02794 MopB_CT_DmsA-EC The MopB_CT_DmsA-EC CD includes the DmsA enzyme of the dmsABC operon encoding the anaerobic dimethylsulfoxide reductase (DMSOR) of Escherichia coli and other related DMSOR-like enzymes. Unlike other DMSOR-like enzymes, this group has a predicted N-terminal iron-sulfur [4Fe-4S] cluster binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=26.35 E-value=91 Score=18.45 Aligned_cols=24 Identities=17% Similarity=0.273 Sum_probs=19.4
Q ss_pred HHHHHhCCCCCeEEEEEcCCCCCC
Q psy7399 14 QSLEEEGLLGNSLVVFISDNGGPT 37 (107)
Q Consensus 14 ~~l~~~g~~~nTlii~tsDHG~~~ 37 (107)
+..++.|+.+.-.|.+++++|...
T Consensus 37 ~~A~~~gi~~Gd~V~v~s~~g~i~ 60 (121)
T cd02794 37 LDAAARGIKDGDRVLVFNDRGKVI 60 (121)
T ss_pred HHHHHcCCCCCCEEEEEcCCceEE
Confidence 346788999999999999999653
No 209
>PF02631 RecX: RecX family; InterPro: IPR003783 RecX is a putative bacterial regulatory protein []. The gene encoding RecX is found downstream of recA, and it is suggested that the RecX protein might be regulator of RecA activity by interaction with the RecA protein or filament [].; GO: 0006282 regulation of DNA repair; PDB: 3DFG_A 3D5L_B 3C1D_B 3E3V_A.
Probab=26.28 E-value=68 Score=19.14 Aligned_cols=21 Identities=29% Similarity=0.493 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHhCCCCC
Q psy7399 4 SLDESVGRVIQSLEEEGLLGN 24 (107)
Q Consensus 4 ~~D~~ig~l~~~l~~~g~~~n 24 (107)
+-+..|..++++|++.|+.++
T Consensus 6 ~~~e~I~~vi~~l~~~gyidD 26 (121)
T PF02631_consen 6 FSEEAIEEVIDRLKELGYIDD 26 (121)
T ss_dssp --HHHHHHHHHHHHHTTSS-H
T ss_pred CCHHHHHHHHHHHHHcCCCCH
Confidence 346778889999999887754
No 210
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=26.22 E-value=1.2e+02 Score=21.03 Aligned_cols=26 Identities=12% Similarity=0.142 Sum_probs=18.2
Q ss_pred HHHHHHHHHhCCCCCeEEEEEcCCCC
Q psy7399 10 GRVIQSLEEEGLLGNSLVVFISDNGG 35 (107)
Q Consensus 10 g~l~~~l~~~g~~~nTlii~tsDHG~ 35 (107)
.+|-+.+++.|+..++-||++.+.|.
T Consensus 73 ~~~~~~~~~~Gi~~d~~VVvyc~~~~ 98 (281)
T PRK11493 73 ETFAVAMRELGVNQDKHLVVYDEGNL 98 (281)
T ss_pred HHHHHHHHHcCCCCCCEEEEECCCCC
Confidence 45566778889987776777766554
No 211
>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]. This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....
Probab=25.96 E-value=1.9e+02 Score=20.58 Aligned_cols=33 Identities=24% Similarity=0.263 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCeEEEEEcCCCC
Q psy7399 3 KSLDESVGRVIQSLEEEGLLGNSLVVFISDNGG 35 (107)
Q Consensus 3 ~~~D~~ig~l~~~l~~~g~~~nTlii~tsDHG~ 35 (107)
.++++.+.++-..|++.|+..+..|++...+..
T Consensus 25 ~~l~~~v~~la~~L~~~g~~~~~~V~i~~~n~~ 57 (417)
T PF00501_consen 25 KQLYERVRKLAAALRKLGVKKGDRVAILLPNSI 57 (417)
T ss_dssp HHHHHHHHHHHHHHHHTTSSTTSEEEEEESSSH
T ss_pred HHHHHHHHHHhhHHHHhCCCccccccccCCccc
Confidence 578899999999999999987777777776654
No 212
>PF07796 DUF1638: Protein of unknown function (DUF1638); InterPro: IPR012437 This entry contains sequences covering an approximately 270 amino acid stretch of a group of hypothetical proteins and are confined to Bacteria and Archaea.
Probab=25.95 E-value=1.8e+02 Score=18.45 Aligned_cols=28 Identities=7% Similarity=0.146 Sum_probs=18.4
Q ss_pred HHHHHHHHHhCCCCCeEEEEEcCCCCCC
Q psy7399 10 GRVIQSLEEEGLLGNSLVVFISDNGGPT 37 (107)
Q Consensus 10 g~l~~~l~~~g~~~nTlii~tsDHG~~~ 37 (107)
.++-+.+++..-..+.++++.+..|...
T Consensus 16 ~~lq~~id~~~~~~d~Ill~YG~Cg~~~ 43 (166)
T PF07796_consen 16 KELQEEIDKASKDYDGILLFYGLCGNGL 43 (166)
T ss_pred HHHHHHHHHhhccCCeEEEEEeCCCCcc
Confidence 3444555554445678999999888764
No 213
>PF09612 HtrL_YibB: Bacterial protein of unknown function (HtrL_YibB); InterPro: IPR011735 The protein from this rare, uncharacterised protein family is designated HtrL or YibB in Escherichia coli, where its gene is found in a region of LPS core biosynthesis genes []. Homologs are found in Shigella flexneri, Campylobacter jejuni, and Caenorhabditis elegans only. The htrL gene may represent an insertion to the LPS core biosynthesis region, rather than an LPS biosynthetic protein.
Probab=25.69 E-value=42 Score=23.68 Aligned_cols=30 Identities=27% Similarity=0.355 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHH-HhCCCCCeEEEEEcC
Q psy7399 3 KSLDESVGRVIQSLE-EEGLLGNSLVVFISD 32 (107)
Q Consensus 3 ~~~D~~ig~l~~~l~-~~g~~~nTlii~tsD 32 (107)
-++|+.....+.+.+ +.|+.++|.+|++=|
T Consensus 45 IfTd~~~~e~I~~iR~~~~L~~Ktt~Ii~~d 75 (271)
T PF09612_consen 45 IFTDESSKEFIKKIRKKHGLEDKTTVIITID 75 (271)
T ss_pred EEEChHHHHHHHHHHHhcCcCCCceEEEEec
Confidence 345566656454443 467777777666644
No 214
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=25.58 E-value=1.3e+02 Score=16.77 Aligned_cols=24 Identities=4% Similarity=0.238 Sum_probs=17.3
Q ss_pred HHHHHHHHHhCCCCCeEEEEEcCCCC
Q psy7399 10 GRVIQSLEEEGLLGNSLVVFISDNGG 35 (107)
Q Consensus 10 g~l~~~l~~~g~~~nTlii~tsDHG~ 35 (107)
-.+++.|++.+ .++-+|+.+++..
T Consensus 59 ~~~~~~i~~~~--~~~~ii~~t~~~~ 82 (112)
T PF00072_consen 59 LELLEQIRQIN--PSIPIIVVTDEDD 82 (112)
T ss_dssp HHHHHHHHHHT--TTSEEEEEESSTS
T ss_pred ccccccccccc--ccccEEEecCCCC
Confidence 46788888877 6677777776665
No 215
>cd01401 PncB_like Nicotinate phosphoribosyltransferase (NAPRTase), related to PncB. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products. This subgroup is present in bacteria, archea and funghi.
Probab=25.57 E-value=1.2e+02 Score=22.55 Aligned_cols=27 Identities=22% Similarity=0.234 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHhCCCCCeEEEEEcCC
Q psy7399 7 ESVGRVIQSLEEEGLLGNSLVVFISDN 33 (107)
Q Consensus 7 ~~ig~l~~~l~~~g~~~nTlii~tsDH 33 (107)
....++.+.+++.|+..+|-+|+.||.
T Consensus 286 ~~~~k~r~~~~~~Gi~p~~K~iv~Sd~ 312 (377)
T cd01401 286 EWGEKAIAHYEKLGIDPKTKTLVFSDG 312 (377)
T ss_pred HHHHHHHHHHHHcCCCCCCcEEEEcCC
Confidence 356778889999998778887777763
No 216
>PF01205 UPF0029: Uncharacterized protein family UPF0029; InterPro: IPR001498 The Impact protein is a translational regulator that ensures constant high levels of translation under amino acid starvation. It acts by interacting with Gcn1/Gcn1L1, thereby preventing activation of Gcn2 protein kinases (EIF2AK1 to 4) and subsequent down-regulation of protein synthesis. It is evolutionary conserved from eukaryotes to archaea []. This entry represents the N-terminal domain of the Impact proteins.; PDB: 1VI7_A 2CVE_A.
Probab=25.41 E-value=1.2e+02 Score=18.29 Aligned_cols=21 Identities=38% Similarity=0.570 Sum_probs=14.5
Q ss_pred HHHHHHHHHhCCCCCeEEEEEc
Q psy7399 10 GRVIQSLEEEGLLGNSLVVFIS 31 (107)
Q Consensus 10 g~l~~~l~~~g~~~nTlii~ts 31 (107)
..+++.|+..++ .|++||++=
T Consensus 65 ~piL~~L~~~~l-~nv~VVV~R 85 (110)
T PF01205_consen 65 KPILEVLEHNGL-TNVLVVVTR 85 (110)
T ss_dssp HHHHHHHHHCTB--SEEEEEEE
T ss_pred HHHHHHHHhCCc-CCEEEEEEE
Confidence 367888888875 567777664
No 217
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=25.36 E-value=94 Score=26.19 Aligned_cols=26 Identities=8% Similarity=0.221 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhCCCCCeEEEEEcCCCCC
Q psy7399 8 SVGRVIQSLEEEGLLGNSLVVFISDNGGP 36 (107)
Q Consensus 8 ~ig~l~~~l~~~g~~~nTlii~tsDHG~~ 36 (107)
.+.+.+++|++.|+ .++++|+||-..
T Consensus 650 ~v~~aI~~l~~aGI---kv~MiTGD~~~t 675 (1053)
T TIGR01523 650 ESAGAVEKCHQAGI---NVHMLTGDFPET 675 (1053)
T ss_pred hHHHHHHHHHHCCC---EEEEECCCCHHH
Confidence 46778999999998 589999999653
No 218
>cd02779 MopB_CT_Arsenite-Ox This CD contains the molybdopterin_binding C-terminal (MopB_CT) region of Arsenite oxidase (Arsenite-Ox) and related proteins. Arsenite oxidase oxidizes arsenite to the less toxic arsenate; it transfers the electrons obtained from the oxidation of arsenite towards the soluble periplasmic electron carriers cytochrome c and/or amicyanin.
Probab=25.36 E-value=90 Score=18.34 Aligned_cols=24 Identities=33% Similarity=0.483 Sum_probs=19.7
Q ss_pred HHHHHhCCCCCeEEEEEcCCCCCC
Q psy7399 14 QSLEEEGLLGNSLVVFISDNGGPT 37 (107)
Q Consensus 14 ~~l~~~g~~~nTlii~tsDHG~~~ 37 (107)
+..++.|+.+.-.|.+.+++|...
T Consensus 40 ~dA~~lgi~~Gd~V~v~s~~G~i~ 63 (115)
T cd02779 40 EDAKREGLKNGDLVEVYNDYGSTT 63 (115)
T ss_pred HHHHHcCCCCCCEEEEEeCCEEEE
Confidence 346788999999999999999654
No 219
>cd02791 MopB_CT_Nitrate-R-NapA-like Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite. Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol oxidation via a membrane-anchored tetraheme cytochrome. This CD (MopB_CT_Nitrate-R-Nap) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs
Probab=25.27 E-value=82 Score=18.48 Aligned_cols=24 Identities=25% Similarity=0.256 Sum_probs=19.5
Q ss_pred HHHHHhCCCCCeEEEEEcCCCCCC
Q psy7399 14 QSLEEEGLLGNSLVVFISDNGGPT 37 (107)
Q Consensus 14 ~~l~~~g~~~nTlii~tsDHG~~~ 37 (107)
+..++.|+.+.-.|.+.++.|...
T Consensus 42 ~dA~~lgi~~Gd~V~v~~~~G~~~ 65 (122)
T cd02791 42 EDAARLGLKEGDLVRVTSRRGEVV 65 (122)
T ss_pred HHHHHcCCCCCCEEEEEcCCEEEE
Confidence 346788999888999999999754
No 220
>cd02792 MopB_CT_Formate-Dh-Na-like Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. This CD (MopB_CT_Formate-Dh-Na-like) is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=25.27 E-value=94 Score=18.20 Aligned_cols=23 Identities=22% Similarity=0.234 Sum_probs=19.1
Q ss_pred HHHHhCCCCCeEEEEEcCCCCCC
Q psy7399 15 SLEEEGLLGNSLVVFISDNGGPT 37 (107)
Q Consensus 15 ~l~~~g~~~nTlii~tsDHG~~~ 37 (107)
..++.|+.+.-.|.+.+++|...
T Consensus 43 dA~~lgi~~Gd~V~v~s~~G~~~ 65 (122)
T cd02792 43 LAAERGIKNGDMVWVSSPRGKIK 65 (122)
T ss_pred HHHHcCCCCCCEEEEEcCCceEE
Confidence 46788999999999999999753
No 221
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=25.04 E-value=94 Score=17.98 Aligned_cols=25 Identities=12% Similarity=0.182 Sum_probs=15.1
Q ss_pred HHHHHHHHhCCCCCeEEEEEcCCCC
Q psy7399 11 RVIQSLEEEGLLGNSLVVFISDNGG 35 (107)
Q Consensus 11 ~l~~~l~~~g~~~nTlii~tsDHG~ 35 (107)
.+-+.+++.++..++-||+..++|.
T Consensus 65 ~~~~~~~~~~~~~~~~iv~yc~~g~ 89 (118)
T cd01449 65 ELRALFAALGITPDKPVIVYCGSGV 89 (118)
T ss_pred HHHHHHHHcCCCCCCCEEEECCcHH
Confidence 4445566777766655666666663
No 222
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=24.83 E-value=79 Score=22.59 Aligned_cols=28 Identities=32% Similarity=0.475 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhCCCCCeEEE---EEcCCCCCC
Q psy7399 9 VGRVIQSLEEEGLLGNSLVV---FISDNGGPT 37 (107)
Q Consensus 9 ig~l~~~l~~~g~~~nTlii---~tsDHG~~~ 37 (107)
+...+++|.+.|. ++-+|+ |++||=+..
T Consensus 243 ~~~~l~~l~~~G~-~~V~v~p~gFv~D~lETl 273 (316)
T PF00762_consen 243 TEDVLEELAKEGV-KRVVVVPPGFVSDCLETL 273 (316)
T ss_dssp HHHHHHHHHHCT--SEEEEEETT-SSSSHHHH
T ss_pred HHHHHHHHHhcCC-CeEEEECCccccccHhHH
Confidence 4567888888884 444444 789987765
No 223
>PF12010 DUF3502: Domain of unknown function (DUF3502); InterPro: IPR022627 This domain is about 140 amino acids in length and is functionally uncharacterised. It is found in bacteria C-terminal to PF01547 from PFAM.
Probab=24.70 E-value=82 Score=19.43 Aligned_cols=18 Identities=17% Similarity=0.287 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHhCCC
Q psy7399 5 LDESVGRVIQSLEEEGLL 22 (107)
Q Consensus 5 ~D~~ig~l~~~l~~~g~~ 22 (107)
.|..+.++.++|++.|+.
T Consensus 99 ~e~~~~~~~~kLk~AGid 116 (134)
T PF12010_consen 99 PEEALPEFNEKLKAAGID 116 (134)
T ss_pred HHHHHHHHHHHHHHhChH
Confidence 688899999999999864
No 224
>COG4242 CphB Cyanophycinase and related exopeptidases [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=24.66 E-value=1.3e+02 Score=21.22 Aligned_cols=28 Identities=25% Similarity=0.444 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHh------CCCCCeEEEEEcCCCC
Q psy7399 8 SVGRVIQSLEEE------GLLGNSLVVFISDNGG 35 (107)
Q Consensus 8 ~ig~l~~~l~~~------g~~~nTlii~tsDHG~ 35 (107)
.+|+|+.++... |+.|||-.+|--||-.
T Consensus 195 RmGRL~sai~~~p~~LG~gIdE~T~avvd~dg~~ 228 (293)
T COG4242 195 RMGRLISAIAQHPSRLGIGIDENTCAVVDRDGKA 228 (293)
T ss_pred HHHHHHHHHHhChHhhcccccCCceEEEEecCce
Confidence 578888888542 7889999999999543
No 225
>PLN02949 transferase, transferring glycosyl groups
Probab=24.35 E-value=1.5e+02 Score=22.30 Aligned_cols=31 Identities=13% Similarity=0.300 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHhCCCCCeEEEEEcCCCCCC
Q psy7399 6 DESVGRVIQSLEEEGLLGNSLVVFISDNGGPT 37 (107)
Q Consensus 6 D~~ig~l~~~l~~~g~~~nTlii~tsDHG~~~ 37 (107)
++.+-..+..|++.+ .+..++|+|+||....
T Consensus 50 ERvl~~a~~~l~~~~-~~~~v~iyt~~~d~~~ 80 (463)
T PLN02949 50 ERVLWCAVRAIQEEN-PDLDCVIYTGDHDASP 80 (463)
T ss_pred hhHHHHHHHHHHhhC-CCCeEEEEcCCCCCCH
Confidence 345556667777765 4578999999987654
No 226
>smart00843 Ftsk_gamma This domain directs oriented DNA translocation and forms a winged helix structure. Mutated proteins with substitutions in the FtsK gamma DNA-recognition helix are impaired in DNA binding.
Probab=24.16 E-value=69 Score=17.35 Aligned_cols=12 Identities=58% Similarity=1.007 Sum_probs=10.3
Q ss_pred HHHHHHHHHhCC
Q psy7399 10 GRVIQSLEEEGL 21 (107)
Q Consensus 10 g~l~~~l~~~g~ 21 (107)
.++++.|++.|+
T Consensus 37 ariid~lE~~Gi 48 (63)
T smart00843 37 ARLIDQLEEEGI 48 (63)
T ss_pred HHHHHHHHHCcC
Confidence 689999999884
No 227
>KOG0366|consensus
Probab=23.99 E-value=43 Score=23.80 Aligned_cols=26 Identities=27% Similarity=0.230 Sum_probs=22.1
Q ss_pred CCeeeccceehhhHHHHHHHHhCCCC
Q psy7399 78 KGQVLENLMHITDWLPTLYFIAGKEK 103 (107)
Q Consensus 78 ~~~~~~~~~~~~Di~pTil~l~gi~~ 103 (107)
.|...+++-..+|++.|+..++|++.
T Consensus 275 ~GGfsDRpgd~~D~fHt~FgiAGLSL 300 (329)
T KOG0366|consen 275 TGGFSDRPGDEVDIFHTLFGIAGLSL 300 (329)
T ss_pred CCCcCCCCCCcccHHHHHHHHhhHhh
Confidence 36677899999999999999998764
No 228
>PRK00782 hypothetical protein; Provisional
Probab=23.98 E-value=1.5e+02 Score=20.55 Aligned_cols=16 Identities=19% Similarity=-0.068 Sum_probs=12.5
Q ss_pred CCCeEEEEEcCCCCCC
Q psy7399 22 LGNSLVVFISDNGGPT 37 (107)
Q Consensus 22 ~~nTlii~tsDHG~~~ 37 (107)
.++++||.+||-....
T Consensus 168 ~~~vliIaSsDlSH~~ 183 (267)
T PRK00782 168 GKKVVVIASSDFTHYE 183 (267)
T ss_pred CCCEEEEEeCCCcCcC
Confidence 4789999999976543
No 229
>TIGR03884 sel_bind_Methan selenium-binding protein. This model describes a homopentameric selenium-binding protein with a suggested role in selenium transport and delivery to selenophosphate synthase, the SelD protein. This protein family is closely related to pfam01906, but is shorter because of several deleted regions. It is restricted to the archaeal genus Methanococcus.
Probab=23.92 E-value=1.1e+02 Score=17.25 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHhCCCCCeEEEE
Q psy7399 4 SLDESVGRVIQSLEEEGLLGNSLVVF 29 (107)
Q Consensus 4 ~~D~~ig~l~~~l~~~g~~~nTlii~ 29 (107)
.+|+.+.++.++.++.|. |.+|=+
T Consensus 26 d~d~Al~eM~e~A~~lGA--nAVVGv 49 (74)
T TIGR03884 26 NVDEIVENLREKVKAKGG--MGLIAF 49 (74)
T ss_pred CHHHHHHHHHHHHHHcCC--CEEEEE
Confidence 579999999999999874 566644
No 230
>PRK14110 F0F1 ATP synthase subunit gamma; Provisional
Probab=23.86 E-value=56 Score=23.00 Aligned_cols=12 Identities=33% Similarity=0.512 Sum_probs=10.6
Q ss_pred EEEEEcCCCCCC
Q psy7399 26 LVVFISDNGGPT 37 (107)
Q Consensus 26 lii~tsDHG~~~ 37 (107)
+|+||||.|.+.
T Consensus 80 ~IvitSDrGLCG 91 (291)
T PRK14110 80 LVIITADRGLAG 91 (291)
T ss_pred EEEEeCCCCccc
Confidence 799999999875
No 231
>TIGR01529 argR_whole arginine repressor. This model includes most members of the arginine-responsive transcriptional regulator family ArgR. This hexameric protein binds DNA at its amino end to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbor-joining tree, some of these paralogous sequences show long branches and differ significantly in an otherwise well-conserved C-terminal region motif GT[VIL][AC]GDDT. These paralogs are excluded from the seed and score in the gray zone of this model, between trusted and noise cutoffs.
Probab=23.78 E-value=74 Score=20.05 Aligned_cols=25 Identities=12% Similarity=0.436 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHhCC-----CCCeEEEEEcC
Q psy7399 8 SVGRVIQSLEEEGL-----LGNSLVVFISD 32 (107)
Q Consensus 8 ~ig~l~~~l~~~g~-----~~nTlii~tsD 32 (107)
.++.+++.++..++ .|+|++|++.|
T Consensus 102 ~va~~iD~~~~~~i~GtiAGdDTilii~~~ 131 (146)
T TIGR01529 102 VIANLLDRLDKDEILGTIAGDDTILVICRD 131 (146)
T ss_pred HHHHHHHhCCCCceEEEEecCCEEEEEECC
Confidence 45556665554332 26788777765
No 232
>cd02781 MopB_CT_Acetylene-hydratase The MopB_CT_Acetylene-hydratase CD contains acetylene hydratase (Ahy) and other related proteins. The acetylene hydratase of Pelobacter acetylenicus is a tungsten iron-sulfur protein involved in the fermentation of acetylene to ethanol and acetate. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=23.64 E-value=1.1e+02 Score=18.17 Aligned_cols=24 Identities=13% Similarity=0.195 Sum_probs=19.2
Q ss_pred HHHHHhCCCCCeEEEEEcCCCCCC
Q psy7399 14 QSLEEEGLLGNSLVVFISDNGGPT 37 (107)
Q Consensus 14 ~~l~~~g~~~nTlii~tsDHG~~~ 37 (107)
+..++.|+.+.-.|.+++++|...
T Consensus 40 ~dA~~~gi~~Gd~V~v~s~~G~~~ 63 (130)
T cd02781 40 ETAAKLGIADGDWVWVETPRGRAR 63 (130)
T ss_pred HHHHHcCCCCCCEEEEECCCCEEE
Confidence 346788999888999999998643
No 233
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=23.59 E-value=1.4e+02 Score=19.82 Aligned_cols=28 Identities=21% Similarity=0.240 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHhCCCCCeEEEEEcCC
Q psy7399 4 SLDESVGRVIQSLEEEGLLGNSLVVFISDN 33 (107)
Q Consensus 4 ~~D~~ig~l~~~l~~~g~~~nTlii~tsDH 33 (107)
..|..+++.++.+... ++=+.|+|.+|=
T Consensus 27 ~~D~YL~~~~~~~~~~--l~Pd~V~fLGDL 54 (193)
T cd08164 27 GNDYFLGHIVSMMQFW--LKPDAVVVLGDL 54 (193)
T ss_pred hhHHHHHHHHHHHHHh--cCCCEEEEeccc
Confidence 5799999999999874 556677888883
No 234
>cd02793 MopB_CT_DMSOR-BSOR-TMAOR The MopB_DMSOR-BSOR-TMAOR CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR always catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO.This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=23.55 E-value=97 Score=18.67 Aligned_cols=24 Identities=17% Similarity=0.315 Sum_probs=19.6
Q ss_pred HHHHHhCCCCCeEEEEEcCCCCCC
Q psy7399 14 QSLEEEGLLGNSLVVFISDNGGPT 37 (107)
Q Consensus 14 ~~l~~~g~~~nTlii~tsDHG~~~ 37 (107)
+..++.|+.+.-.|.+.+++|...
T Consensus 40 ~dA~~~gi~~Gd~V~v~s~~G~~~ 63 (129)
T cd02793 40 ADAAARGIADGDIVRVFNDRGACL 63 (129)
T ss_pred HHHHHcCCCCCCEEEEEcCCEEEE
Confidence 346788999999999999999653
No 235
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=23.42 E-value=91 Score=20.56 Aligned_cols=11 Identities=27% Similarity=0.573 Sum_probs=9.8
Q ss_pred CCCCCeEEEEE
Q psy7399 20 GLLGNSLVVFI 30 (107)
Q Consensus 20 g~~~nTlii~t 30 (107)
..+++|+|+||
T Consensus 114 ~~~k~~ivvfT 124 (212)
T PF04548_consen 114 EIWKHTIVVFT 124 (212)
T ss_dssp GGGGGEEEEEE
T ss_pred HHHhHhhHHhh
Confidence 57899999999
No 236
>PF09423 PhoD: PhoD-like phosphatase; InterPro: IPR018946 This entry contains a number of putative proteins as well as Alkaline phosphatase D which catalyses the reaction: A phosphate monoester + H(2)O = an alcohol + phosphate ; PDB: 2YEQ_B.
Probab=23.36 E-value=1.3e+02 Score=22.42 Aligned_cols=26 Identities=23% Similarity=0.432 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHhCCCCCeEEEEEcC-CCC
Q psy7399 8 SVGRVIQSLEEEGLLGNSLVVFISD-NGG 35 (107)
Q Consensus 8 ~ig~l~~~l~~~g~~~nTlii~tsD-HG~ 35 (107)
+-.+|++.|++.+.. -+|++++| |-.
T Consensus 351 er~~Ll~~l~~~~~~--~vV~LSGDvH~~ 377 (453)
T PF09423_consen 351 ERQRLLDFLRESGIR--NVVFLSGDVHAS 377 (453)
T ss_dssp HHHHHHHHHHHTT-----EEEEE-SSSSE
T ss_pred HHHHHHHHHHhhCCC--CEEEEecCcchh
Confidence 567899999887653 38899999 543
No 237
>cd02439 DMB-PRT_CobT Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase (DMB-PRT), also called CobT. Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase (DMB-PRT/CobT, not to be confused with the CobT subunit of cobaltochelatase, which does not belong to this group) catalyzes the synthesis of alpha-ribazole-5'-phosphate, from nicotinate mononucleotide (NAMN) and 5,6-dimethylbenzimidazole (DMB). This function is essential to the anaerobic biosynthesis pathway of cobalamin (vitamin B12), which is the largest and most complex cofactor in a number of enzyme-catalyzed reactions in bacteria, archaea and eukaryotes. Only eubacteria and archaebacteria can synthesize vitamin B12; multicellular organisms have lost this ability during evolution. DMB-PRT/CobT works sequentially with CobC (a phosphatase) to couple the lower ligand of cobalamin to a ribosyl moiety. DMB is the most common lower ligand of cobamides; other lower ligands include adenine, 5-methoxyben
Probab=23.30 E-value=44 Score=23.91 Aligned_cols=18 Identities=22% Similarity=0.414 Sum_probs=14.6
Q ss_pred CCCCeEEEEEcCCCCCCC
Q psy7399 21 LLGNSLVVFISDNGGPTV 38 (107)
Q Consensus 21 ~~~nTlii~tsDHG~~~~ 38 (107)
..+.++++|.+|||-...
T Consensus 28 ~~~~~~~v~aaDhgv~~~ 45 (315)
T cd02439 28 LPEKTVLTFAADHGVAAE 45 (315)
T ss_pred CCCCeEEEEcCcHHHHhc
Confidence 457899999999997653
No 238
>KOG4277|consensus
Probab=23.27 E-value=68 Score=23.37 Aligned_cols=27 Identities=22% Similarity=0.406 Sum_probs=21.0
Q ss_pred HHHHHHHHHHH--hCCCCCeEEEEEcCCC
Q psy7399 8 SVGRVIQSLEE--EGLLGNSLVVFISDNG 34 (107)
Q Consensus 8 ~ig~l~~~l~~--~g~~~nTlii~tsDHG 34 (107)
.|..+++.++. .|+.+.|+..|.+||=
T Consensus 339 niedilqFientsegI~d~TieA~GGd~i 367 (468)
T KOG4277|consen 339 NIEDILQFIENTSEGIDDETIEAFGGDHI 367 (468)
T ss_pred hHHHHHHHHhcccccccccceeecCchHH
Confidence 34566677765 6899999999999985
No 239
>TIGR00341 conserved hypothetical protein TIGR00341. This conserved hypothetical protein is found so far only in three archaeal genomes and in Streptomyces coelicolor. It shares a hydrophobic uncharacterized domain (see model TIGR00271) of about 180 residues with several eubacterial proteins, including the much longer protein sll1151 of Synechocystis PCC6803.
Probab=23.17 E-value=1.2e+02 Score=22.11 Aligned_cols=19 Identities=16% Similarity=0.258 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHhCCCCC
Q psy7399 6 DESVGRVIQSLEEEGLLGN 24 (107)
Q Consensus 6 D~~ig~l~~~l~~~g~~~n 24 (107)
++...+++++|++.|+.++
T Consensus 51 ~~~~e~vld~L~~lgl~~~ 69 (325)
T TIGR00341 51 DSDTEKIVSRLKDKLLGYK 69 (325)
T ss_pred hhhHHHHHHHHHHcCCCCC
Confidence 5688999999999998754
No 240
>PRK15052 D-tagatose-1,6-bisphosphate aldolase subunit GatZ; Provisional
Probab=23.15 E-value=1.5e+02 Score=22.42 Aligned_cols=29 Identities=10% Similarity=0.225 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhCCCCCeEEEEEcCCCCCC
Q psy7399 9 VGRVIQSLEEEGLLGNSLVVFISDNGGPT 37 (107)
Q Consensus 9 ig~l~~~l~~~g~~~nTlii~tsDHG~~~ 37 (107)
+.+++..+.++--+++--+|+.+||+...
T Consensus 64 F~~~V~~iA~~~gf~~~~iiLggDHlGPn 92 (421)
T PRK15052 64 FREFVYGIADKVGFPRERIILGGDHLGPN 92 (421)
T ss_pred HHHHHHHHHHHcCCChhcEEeecCCCCCc
Confidence 44555555444344444889999999873
No 241
>PF02900 LigB: Catalytic LigB subunit of aromatic ring-opening dioxygenase; InterPro: IPR004183 Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms. Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes (IPR000627 from INTERPRO) use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) [, ]. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Extradiol dioxygenases are usually homo-multimeric, bind one atom of ferrous ion per subunit and have a subunit size of about 33 kDa. Extradiol dioxygenases can be divided into three classes. Class I and II enzymes (IPR000486 from INTERPRO) show sequence similarity, with the two-domain class II enzymes having evolved from a class I enzyme through gene duplication. Class III enzymes are different in sequence and structure, but they do share several common active-site characteristics with the class II enzymes, in particular the coordination sphere and the disposition of the putative catalytic base are very similar. Class III enzymes usually have two subunits, designated A and B. Enzymes that belong to the extradiol class III family include Protocatechuate 4,5-dioxygenase (4,5-PCD; LigAB) (1.13.11.8 from EC) []; and 2'-aminobiphenyl-2,3-diol 1,2-dioxygenase (CarBaBb) []. The crystal structure of dioxygenase LigAB revealed that the molecule is an alpha2beta2 tetramer. The active site contains a non-heme iron coordinated by His12, His61, Glu242, and a water molecule located in a deep cleft of the beta subunit, which is covered by the alpha subunit []. This entry represents the structural domain of subunit B.; GO: 0008198 ferrous iron binding, 0016491 oxidoreductase activity, 0006725 cellular aromatic compound metabolic process; PDB: 2PW6_A 1B4U_D 1BOU_B.
Probab=23.10 E-value=91 Score=21.40 Aligned_cols=28 Identities=14% Similarity=0.022 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHhCCCCCeEEEEEcCCCC
Q psy7399 6 DESVGRVIQSLEEEGLLGNSLVVFISDNGG 35 (107)
Q Consensus 6 D~~ig~l~~~l~~~g~~~nTlii~tsDHG~ 35 (107)
-+.+.++-++|++. .=+++||+++||=.
T Consensus 27 ~~~~~~~~~~l~~~--~pd~ivvis~h~~~ 54 (272)
T PF02900_consen 27 FAALQELGRRLREA--KPDVIVVISPHWFT 54 (272)
T ss_dssp HHHHHHHHHHCHST--S-SEEEEEEEEECC
T ss_pred HHHHHHHHHHHHHc--CCCEEEEEeCCcch
Confidence 34455555555554 45688888887766
No 242
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=23.00 E-value=83 Score=22.78 Aligned_cols=28 Identities=29% Similarity=0.272 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHhCCCCCeEEEEEc
Q psy7399 4 SLDESVGRVIQSLEEEGLLGNSLVVFIS 31 (107)
Q Consensus 4 ~~D~~ig~l~~~l~~~g~~~nTlii~ts 31 (107)
.||-.|+.+-+.|++.|...|+.|+=.|
T Consensus 163 MMDGrV~aIR~aLD~~G~~~~v~ImSYs 190 (320)
T cd04824 163 MMDGRVRAIKQALIQAGLGNKVSVMSYS 190 (320)
T ss_pred ccccHHHHHHHHHHHCCCccCCeeeehH
Confidence 4799999999999999986777777443
No 243
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=22.91 E-value=1.1e+02 Score=21.80 Aligned_cols=26 Identities=31% Similarity=0.566 Sum_probs=17.1
Q ss_pred HHHHHHHHhCC---------CCCeEEEEEcCCCCCC
Q psy7399 11 RVIQSLEEEGL---------LGNSLVVFISDNGGPT 37 (107)
Q Consensus 11 ~l~~~l~~~g~---------~~nTlii~tsDHG~~~ 37 (107)
+++++|+++|+ .++..||| .=||..+
T Consensus 44 ~vv~~L~~~GV~~v~~~~~v~~~~~Vii-rAHGv~~ 78 (298)
T PRK01045 44 YVVERLEKKGAIFVEELDEVPDGAIVIF-SAHGVSP 78 (298)
T ss_pred HHHHHHHHCCCEEecCcccCCCCCEEEE-eCCCCCH
Confidence 46788998887 23444444 4599876
No 244
>PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp. (strain PCC 6803) hypothetical protein slr0846. These are small proteins of 12 to 18kDa which seem to contain a signal sequence, and may represent a family of probable transcriptional regulators.; PDB: 3T8T_A 3T8R_A 3K69_A 3LWF_C 1XD7_A 2Y75_E 1YLF_C.
Probab=22.88 E-value=1e+02 Score=17.07 Aligned_cols=15 Identities=27% Similarity=0.612 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHhCC
Q psy7399 7 ESVGRVIQSLEEEGL 21 (107)
Q Consensus 7 ~~ig~l~~~l~~~g~ 21 (107)
..+.++++.|++.|+
T Consensus 40 ~~l~kil~~L~~~Gl 54 (83)
T PF02082_consen 40 SYLRKILQKLKKAGL 54 (83)
T ss_dssp HHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhhCCe
Confidence 468899999999996
No 245
>TIGR02810 agaZ_gatZ D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit. Aldolases specific for D-tagatose-bisphosphate occur in distinct pathways in Escherichia coli and other bacteria, one for the degradation of galactitol (formerly dulcitol) and one for degradation of N-acetyl-galactosamine and D-galactosamine. This family represents a protein of both systems that behaves as a non-catalytic subunit of D-tagatose-bisphosphate aldolase, required both for full activity and for good stability of the aldolase. Note that members of this protein family appear in public databases annotated as putative tagatose 6-phosphate kinases, possibly in error.
Probab=22.80 E-value=1.5e+02 Score=22.37 Aligned_cols=29 Identities=10% Similarity=0.234 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhCCCCCeEEEEEcCCCCCC
Q psy7399 9 VGRVIQSLEEEGLLGNSLVVFISDNGGPT 37 (107)
Q Consensus 9 ig~l~~~l~~~g~~~nTlii~tsDHG~~~ 37 (107)
+..++..+.++--+++--+|+.+||+...
T Consensus 63 F~~~V~~iA~~~gf~~~~iiLggDHlGPn 91 (420)
T TIGR02810 63 FRDFVETIADRIGFPRDRLILGGDHLGPN 91 (420)
T ss_pred HHHHHHHHHHHcCCChhcEEeecCCCCCc
Confidence 44555555444334444889999999874
No 246
>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2.7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....
Probab=22.71 E-value=1.4e+02 Score=19.33 Aligned_cols=26 Identities=19% Similarity=0.367 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHhCCCCCeEEEEEcCCCC
Q psy7399 8 SVGRVIQSLEEEGLLGNSLVVFISDNGG 35 (107)
Q Consensus 8 ~ig~l~~~l~~~g~~~nTlii~tsDHG~ 35 (107)
.+...++++++.+..++ ||+.+|+-.
T Consensus 26 Li~~~i~~a~~s~~~d~--IvVaTd~~~ 51 (217)
T PF02348_consen 26 LIEYVIERAKQSKLIDE--IVVATDDEE 51 (217)
T ss_dssp HHHHHHHHHHHTTTTSE--EEEEESSHH
T ss_pred HHHHHHHHHHhCCCCCe--EEEeCCCHH
Confidence 46778888888877765 456666543
No 247
>PRK13358 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=22.69 E-value=2.1e+02 Score=19.68 Aligned_cols=15 Identities=33% Similarity=0.053 Sum_probs=12.3
Q ss_pred CCCeEEEEEcCCCCC
Q psy7399 22 LGNSLVVFISDNGGP 36 (107)
Q Consensus 22 ~~nTlii~tsDHG~~ 36 (107)
.-+|+|||..||...
T Consensus 42 ~Pd~iViis~~h~~~ 56 (269)
T PRK13358 42 RPDVLVVIGSDHLFN 56 (269)
T ss_pred CCCEEEEEeCchhhh
Confidence 358999999999854
No 248
>cd01462 VWA_YIEM_type VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=22.61 E-value=1.9e+02 Score=17.51 Aligned_cols=26 Identities=15% Similarity=0.319 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHhCCCCCeEEEEEcCC
Q psy7399 7 ESVGRVIQSLEEEGLLGNSLVVFISDN 33 (107)
Q Consensus 7 ~~ig~l~~~l~~~g~~~nTlii~tsDH 33 (107)
..+...++.+++.+ ..+..||+.||-
T Consensus 79 ~al~~a~~~l~~~~-~~~~~ivliTDG 104 (152)
T cd01462 79 KALRYALELIERRD-PRKADIVLITDG 104 (152)
T ss_pred HHHHHHHHHHHhcC-CCCceEEEECCC
Confidence 44556666665542 346788999995
No 249
>PRK10997 yieM hypothetical protein; Provisional
Probab=22.56 E-value=1.3e+02 Score=23.21 Aligned_cols=29 Identities=21% Similarity=0.147 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHhCCCCCeEEEEEcCCC
Q psy7399 5 LDESVGRVIQSLEEEGLLGNSLVVFISDNG 34 (107)
Q Consensus 5 ~D~~ig~l~~~l~~~g~~~nTlii~tsDHG 34 (107)
+...+...++.+++ ..+.|+.||+.||-=
T Consensus 399 l~~aL~~al~~l~~-~~~r~adIVVISDF~ 427 (487)
T PRK10997 399 LAPCLRAIIEKMQG-REWFDADAVVISDFI 427 (487)
T ss_pred HHHHHHHHHHHHcc-cccCCceEEEECCCC
Confidence 34556667777765 457899999999983
No 250
>KOG0796|consensus
Probab=22.52 E-value=1.1e+02 Score=22.09 Aligned_cols=22 Identities=32% Similarity=0.646 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHHHHHHHhCCCC
Q psy7399 2 LKSLDESVGRVIQSLEEEGLLG 23 (107)
Q Consensus 2 i~~~D~~ig~l~~~l~~~g~~~ 23 (107)
|..+|..|+.+++.+++.|-..
T Consensus 124 v~~l~e~I~~~l~~~E~LG~eG 145 (319)
T KOG0796|consen 124 VHELEEKIGKLLEKAEELGEEG 145 (319)
T ss_pred HHHHHHHHHHHHHHHHHHhhcC
Confidence 5678889999999888877543
No 251
>PF13730 HTH_36: Helix-turn-helix domain
Probab=22.48 E-value=1.2e+02 Score=15.09 Aligned_cols=16 Identities=50% Similarity=0.781 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHhCC
Q psy7399 6 DESVGRVIQSLEEEGL 21 (107)
Q Consensus 6 D~~ig~l~~~l~~~g~ 21 (107)
.+-|.+.++.|++.|+
T Consensus 39 ~~Tv~~~i~~L~~~G~ 54 (55)
T PF13730_consen 39 RRTVQRAIKELEEKGL 54 (55)
T ss_pred HHHHHHHHHHHHHCcC
Confidence 4567888899998885
No 252
>PRK13490 chemoreceptor glutamine deamidase CheD; Provisional
Probab=22.43 E-value=90 Score=20.14 Aligned_cols=26 Identities=23% Similarity=0.240 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCeEEE
Q psy7399 3 KSLDESVGRVIQSLEEEGLLGNSLVV 28 (107)
Q Consensus 3 ~~~D~~ig~l~~~l~~~g~~~nTlii 28 (107)
+|.|..+..+++.+.++|...+.+.+
T Consensus 64 rY~d~ai~~Li~~m~~~Ga~~~~l~a 89 (162)
T PRK13490 64 KFADLAIPILIEKMEKLGANKRNLKA 89 (162)
T ss_pred cCHHHHHHHHHHHHHHcCCCHHHEEE
Confidence 68999999999999999987555544
No 253
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=22.39 E-value=1.6e+02 Score=21.37 Aligned_cols=28 Identities=18% Similarity=0.318 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHhCCCCCeEEEEEcCCCCC
Q psy7399 7 ESVGRVIQSLEEEGLLGNSLVVFISDNGGP 36 (107)
Q Consensus 7 ~~ig~l~~~l~~~g~~~nTlii~tsDHG~~ 36 (107)
++|-++++.|++ ..+-|+|++|-|=|-.
T Consensus 190 aqIl~Ll~~l~~--e~~~aiilITHDl~vv 217 (316)
T COG0444 190 AQILDLLKELQR--EKGTALILITHDLGVV 217 (316)
T ss_pred HHHHHHHHHHHH--hcCCEEEEEeCCHHHH
Confidence 466677777766 3566899999987743
No 254
>cd07373 2A5CPDO_A The alpha subunit of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO) catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. The alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication. This model describes the alpha subunit, which does not contain a potential metal binding site and may not possess catalytic activity.
Probab=22.35 E-value=2.2e+02 Score=19.71 Aligned_cols=26 Identities=8% Similarity=0.070 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHhCCCCCeEEEEEcCCC
Q psy7399 7 ESVGRVIQSLEEEGLLGNSLVVFISDNG 34 (107)
Q Consensus 7 ~~ig~l~~~l~~~g~~~nTlii~tsDHG 34 (107)
+.+.++-+++++. .-+++|||++++-
T Consensus 29 ~a~~~lg~~l~~~--~Pd~IvviS~Hw~ 54 (271)
T cd07373 29 AATRQAGKALAAS--RPDVVLVYSTQWF 54 (271)
T ss_pred HHHHHHHHHHHHh--CCCEEEEECCCCc
Confidence 4445555555432 3568777777654
No 255
>PLN02449 ferrochelatase
Probab=22.33 E-value=2.1e+02 Score=22.09 Aligned_cols=34 Identities=15% Similarity=0.162 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCeEEEEEcCCCCCC
Q psy7399 3 KSLDESVGRVIQSLEEEGLLGNSLVVFISDNGGPT 37 (107)
Q Consensus 3 ~~~D~~ig~l~~~l~~~g~~~nTlii~tsDHG~~~ 37 (107)
.|++.....|.+.+++.+..++.. ++.|=||-..
T Consensus 255 ~yI~A~a~~I~~~l~~~~~~~~~~-LlFSAHGlP~ 288 (485)
T PLN02449 255 GYVKAMADLIKKELAKFSDPEEVH-IFFSAHGVPV 288 (485)
T ss_pred HHHHHHHHHHHHHHHhccCcCCcE-EEEecCCChh
Confidence 366777777778887754445555 5556698764
No 256
>cd02782 MopB_CT_1 The MopB_CT_1 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB homologs.
Probab=22.18 E-value=1.2e+02 Score=18.16 Aligned_cols=24 Identities=21% Similarity=0.187 Sum_probs=19.2
Q ss_pred HHHHHhCCCCCeEEEEEcCCCCCC
Q psy7399 14 QSLEEEGLLGNSLVVFISDNGGPT 37 (107)
Q Consensus 14 ~~l~~~g~~~nTlii~tsDHG~~~ 37 (107)
+..++.|+.+.-.|.+.+++|...
T Consensus 40 ~dA~~~gi~~Gd~V~v~s~~g~~~ 63 (129)
T cd02782 40 DDAAALGLADGDKVRVTSAAGSVE 63 (129)
T ss_pred HHHHHcCCCCCCEEEEEcCCCeEE
Confidence 356788999999999999998643
No 257
>PRK00035 hemH ferrochelatase; Reviewed
Probab=22.00 E-value=2.2e+02 Score=20.25 Aligned_cols=33 Identities=15% Similarity=0.274 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHhCCC-CCeEEEEEcCCCCCC
Q psy7399 4 SLDESVGRVIQSLEEEGLL-GNSLVVFISDNGGPT 37 (107)
Q Consensus 4 ~~D~~ig~l~~~l~~~g~~-~nTlii~tsDHG~~~ 37 (107)
+++....++.+.+++.+.. +++.++|++ ||...
T Consensus 168 ~i~~l~~~I~~~~~~~~~~~~~~~llfs~-HG~P~ 201 (333)
T PRK00035 168 YIEALAESIREALAKHGEDPEPDRLLFSA-HGLPQ 201 (333)
T ss_pred HHHHHHHHHHHHHHhcCcccCCcEEEEec-CCCch
Confidence 5666677777777655432 456665555 87543
No 258
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=21.95 E-value=1.2e+02 Score=24.87 Aligned_cols=27 Identities=15% Similarity=0.348 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHhCCCCCeEEEEEcCCCCC
Q psy7399 7 ESVGRVIQSLEEEGLLGNSLVVFISDNGGP 36 (107)
Q Consensus 7 ~~ig~l~~~l~~~g~~~nTlii~tsDHG~~ 36 (107)
..+.+.+++|++.|+ .++++|+||-..
T Consensus 531 ~~~~~~i~~l~~~Gi---~v~miTGD~~~t 557 (884)
T TIGR01522 531 PGVKEAVTTLITGGV---RIIMITGDSQET 557 (884)
T ss_pred hHHHHHHHHHHHCCC---eEEEECCCCHHH
Confidence 356788999999998 489999999743
No 259
>cd02777 MopB_CT_DMSOR-like The MopB_CT_DMSOR-like CD contains dimethylsulfoxide reductase (DMSOR), biotin sulfoxide reductase (BSOR), trimethylamine N-oxide reductase (TMAOR) and other related proteins. DMSOR always catalyzes the reduction of DMSO to dimethylsulfide, but its cellular location and oligomerization state are organism-dependent. For example, in Rhodobacter sphaeriodes and Rhodobacter capsulatus, it is an 82-kDa monomeric soluble protein found in the periplasmic space; in E. coli, it is membrane-bound and exists as a heterotrimer. BSOR catalyzes the reduction of biotin sulfixode to biotin, and is unique among Mo enzymes because no additional auxiliary proteins or cofactors are required. TMAOR is similar to DMSOR, but its only natural substrate is TMAO. Also included in this group is the pyrogallol-phloroglucinol transhydroxylase from Pelobacter acidigallici. This CD is of the conserved molybdopterin_binding C-terminal (MopB_CT) region present in many, but not all, MopB hom
Probab=21.82 E-value=1.2e+02 Score=18.15 Aligned_cols=24 Identities=17% Similarity=0.302 Sum_probs=19.4
Q ss_pred HHHHHhCCCCCeEEEEEcCCCCCC
Q psy7399 14 QSLEEEGLLGNSLVVFISDNGGPT 37 (107)
Q Consensus 14 ~~l~~~g~~~nTlii~tsDHG~~~ 37 (107)
+..++.|+.+.-.|.+.+++|...
T Consensus 41 ~dA~~lgi~~Gd~V~v~s~~g~i~ 64 (127)
T cd02777 41 LDAAARGIKDGDIVRVFNDRGAVL 64 (127)
T ss_pred HHHHHcCCCCCCEEEEEcCCeEEE
Confidence 346788999999999999998653
No 260
>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.
Probab=21.72 E-value=1.5e+02 Score=20.08 Aligned_cols=12 Identities=33% Similarity=0.462 Sum_probs=7.4
Q ss_pred eEEEEEcCCCCC
Q psy7399 25 SLVVFISDNGGP 36 (107)
Q Consensus 25 Tlii~tsDHG~~ 36 (107)
+++++..=||..
T Consensus 76 ~~v~~~~sHG~~ 87 (243)
T cd00032 76 SFVCVILSHGEE 87 (243)
T ss_pred eeEEEECCCCCC
Confidence 455555559976
No 261
>PF09397 Ftsk_gamma: Ftsk gamma domain; InterPro: IPR018541 This domain directs oriented DNA translocation and forms a winged helix structure []. Mutated proteins with substitutions in the FtsK gamma DNA-recognition helix are impaired in DNA binding []. ; PDB: 2VE9_B 2VE8_E 2J5O_A 2J5P_A.
Probab=21.55 E-value=84 Score=17.08 Aligned_cols=13 Identities=54% Similarity=0.966 Sum_probs=10.8
Q ss_pred HHHHHHHHHHhCC
Q psy7399 9 VGRVIQSLEEEGL 21 (107)
Q Consensus 9 ig~l~~~l~~~g~ 21 (107)
-.++++.|++.|+
T Consensus 37 Aariid~LE~~Gi 49 (65)
T PF09397_consen 37 AARIIDQLEEEGI 49 (65)
T ss_dssp HHHHHHHHHHCTS
T ss_pred HHHHHHHHHHCCC
Confidence 3689999999985
No 262
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=21.53 E-value=1.1e+02 Score=25.66 Aligned_cols=26 Identities=23% Similarity=0.317 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhCCCCCeEEEEEcCCCCC
Q psy7399 8 SVGRVIQSLEEEGLLGNSLVVFISDNGGP 36 (107)
Q Consensus 8 ~ig~l~~~l~~~g~~~nTlii~tsDHG~~ 36 (107)
...+.++.|++.|+ .++++|+||-..
T Consensus 660 ~~~~~I~~l~~agi---~v~miTGD~~~T 685 (1054)
T TIGR01657 660 DTKEVIKELKRASI---RTVMITGDNPLT 685 (1054)
T ss_pred cHHHHHHHHHHCCC---eEEEECCCCHHH
Confidence 35678899999998 489999999543
No 263
>PF05060 MGAT2: N-acetylglucosaminyltransferase II (MGAT2); InterPro: IPR007754 N-acetylglucosaminyltransferase II (2.4.1.143 from EC) is a Golgi resident enzyme that catalyzes an essential step in the biosynthetic pathway leading from high mannose to complex N-linked oligosaccharides []. Mutations in the MGAT2 gene lead to a congenital disorder of glycosylation (CDG IIa). CDG IIa patients have an increased bleeding tendency, unrelated to coagulation factors []. Synonym(s): UDP-N-acetyl-D-glucosamine:alpha-6-D-mannoside beta-1,2-N- acetylglucosaminyltransferase II, GnT II/MGAT2.; GO: 0008455 alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0005795 Golgi stack, 0016021 integral to membrane
Probab=21.53 E-value=1.7e+02 Score=21.56 Aligned_cols=29 Identities=24% Similarity=0.295 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHhCCCCCeEEEEEcCCCC
Q psy7399 7 ESVGRVIQSLEEEGLLGNSLVVFISDNGG 35 (107)
Q Consensus 7 ~~ig~l~~~l~~~g~~~nTlii~tsDHG~ 35 (107)
..+..+++.|++.--=++|++||.-|-=.
T Consensus 44 ~yl~~li~sL~~~~~I~~~llifSHd~~~ 72 (356)
T PF05060_consen 44 EYLKLLIDSLSQARGIEEALLIFSHDFYS 72 (356)
T ss_pred HHHHHHHHHHHHhhCccceEEEEeccCCh
Confidence 35678899998776668899999887543
No 264
>PRK03341 arginine repressor; Provisional
Probab=21.48 E-value=82 Score=20.50 Aligned_cols=26 Identities=12% Similarity=0.231 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHhCCC-----CCeEEEEEcCC
Q psy7399 8 SVGRVIQSLEEEGLL-----GNSLVVFISDN 33 (107)
Q Consensus 8 ~ig~l~~~l~~~g~~-----~nTlii~tsDH 33 (107)
.|+.+++.++-.++. |+|++|++.|.
T Consensus 121 ~va~~iD~~~~~eIlGTIAGDDTIlvi~~~~ 151 (168)
T PRK03341 121 YLASAIDRAALPEVVGTIAGDDTVLVIARDP 151 (168)
T ss_pred HHHHHHHhCCCCCeEEEeecCCEEEEEeCCH
Confidence 355555555433322 67777777653
No 265
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=21.44 E-value=1.4e+02 Score=21.49 Aligned_cols=27 Identities=33% Similarity=0.334 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHhCCCCCeEEEEEc
Q psy7399 5 LDESVGRVIQSLEEEGLLGNSLVVFIS 31 (107)
Q Consensus 5 ~D~~ig~l~~~l~~~g~~~nTlii~ts 31 (107)
.|.++-+.+..+=-..++++++|+||-
T Consensus 136 ~DkqlLk~Iqe~FG~~iw~~~IVVfTh 162 (313)
T TIGR00991 136 LDGQVIRAITDSFGKDIWRKSLVVLTH 162 (313)
T ss_pred HHHHHHHHHHHHhhhhhhccEEEEEEC
Confidence 344443333333224578999999984
No 266
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=21.32 E-value=97 Score=22.40 Aligned_cols=27 Identities=26% Similarity=0.292 Sum_probs=20.4
Q ss_pred HHHHHHHHHhCCCCCeEEEEEcCCCCCC
Q psy7399 10 GRVIQSLEEEGLLGNSLVVFISDNGGPT 37 (107)
Q Consensus 10 g~l~~~l~~~g~~~nTlii~tsDHG~~~ 37 (107)
-.+.+++++.+.++| .+|+.-|+|...
T Consensus 150 p~l~~~~~~~~~~~d-~vVVSPD~Ggv~ 176 (314)
T COG0462 150 PLLAEYIREKYDLDD-PVVVSPDKGGVK 176 (314)
T ss_pred HHHHHHHHHhcCCCC-cEEECCCccHHH
Confidence 346677888776667 888999999754
No 267
>PF12371 DUF3651: Protein of unknown function (DUF3651); InterPro: IPR022113 This domain family is found in eukaryotes, and is approximately 70 amino acids in length. This family is frequently annotated as a membrane protein but there is little associated literature to back this up.
Probab=21.10 E-value=63 Score=17.65 Aligned_cols=17 Identities=29% Similarity=0.516 Sum_probs=13.9
Q ss_pred HhCCCCCeEEEEEcCCCC
Q psy7399 18 EEGLLGNSLVVFISDNGG 35 (107)
Q Consensus 18 ~~g~~~nTlii~tsDHG~ 35 (107)
+.|..|+++++.| ++|.
T Consensus 8 ~~g~~~~~l~i~T-~~g~ 24 (73)
T PF12371_consen 8 SEGSIESSLFIHT-SSGP 24 (73)
T ss_pred EecccccEEEEEE-ccCc
Confidence 4577889999988 8887
No 268
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=21.08 E-value=1.1e+02 Score=20.94 Aligned_cols=13 Identities=23% Similarity=0.429 Sum_probs=10.5
Q ss_pred hCCCCCeEEEEEc
Q psy7399 19 EGLLGNSLVVFIS 31 (107)
Q Consensus 19 ~g~~~nTlii~ts 31 (107)
..++.+++||+|-
T Consensus 146 ~~i~~~~ivV~T~ 158 (249)
T cd01853 146 PSIWRNAIVVLTH 158 (249)
T ss_pred hhhHhCEEEEEeC
Confidence 4578899999984
No 269
>PRK09192 acyl-CoA synthetase; Validated
Probab=20.96 E-value=2.4e+02 Score=21.42 Aligned_cols=34 Identities=21% Similarity=0.259 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCeEEEEEcCCCCC
Q psy7399 3 KSLDESVGRVIQSLEEEGLLGNSLVVFISDNGGP 36 (107)
Q Consensus 3 ~~~D~~ig~l~~~l~~~g~~~nTlii~tsDHG~~ 36 (107)
.+++..+.++-..|.+.|+.....|.+.++++..
T Consensus 53 ~eL~~~~~~~a~~L~~~gi~~gd~V~l~~~n~~~ 86 (579)
T PRK09192 53 QTLRARAEAGARRLLALGLKPGDRVALIAETDGD 86 (579)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCchh
Confidence 5678889999999999999888888888887753
No 270
>PF09784 L31: Mitochondrial ribosomal protein L31; InterPro: IPR016340 This group represents a predicted mitochondrial ribosomal protein L31, fungal type [, ].
Probab=20.88 E-value=1.6e+02 Score=17.64 Aligned_cols=20 Identities=20% Similarity=0.542 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHHHHHHhCC
Q psy7399 2 LKSLDESVGRVIQSLEEEGL 21 (107)
Q Consensus 2 i~~~D~~ig~l~~~l~~~g~ 21 (107)
++.+|+.|..|-+.|++.|.
T Consensus 28 lr~VD~vi~~l~~al~~~~~ 47 (103)
T PF09784_consen 28 LRAVDSVIDTLYEALKKKGK 47 (103)
T ss_pred HHHHHHHHHHHHHHHHHcCC
Confidence 46789999999999887654
No 271
>PF12791 RsgI_N: Anti-sigma factor N-terminus; InterPro: IPR024449 The heat shock genes in Bacillus subtilis can be classified into several groups according to their regulation [], and the sigma gene, sigI, of Bacillus subtilis belongs to the group IV heat-shock response genes and has many orthologues in the bacterial phylum Firmicutes []. Regulation of sigma factor I is carried out by RsgI from the same operon. This entry represents the N-terminal cytoplasmic portion of RsgI ('upstream' of the single transmembrane helix) which has been shown to interact directly with Sigma-I [].
Probab=20.73 E-value=86 Score=15.97 Aligned_cols=14 Identities=14% Similarity=0.237 Sum_probs=9.0
Q ss_pred CCCCeEEEEEcCCC
Q psy7399 21 LLGNSLVVFISDNG 34 (107)
Q Consensus 21 ~~~nTlii~tsDHG 34 (107)
+.+|+.+|+|+|.-
T Consensus 3 i~~~~aiVlT~dGe 16 (56)
T PF12791_consen 3 IKKKYAIVLTPDGE 16 (56)
T ss_pred CcCCEEEEEcCCCc
Confidence 34677787777643
No 272
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=20.63 E-value=1.9e+02 Score=17.99 Aligned_cols=17 Identities=29% Similarity=0.337 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHhCCCC
Q psy7399 7 ESVGRVIQSLEEEGLLG 23 (107)
Q Consensus 7 ~~ig~l~~~l~~~g~~~ 23 (107)
..+.+++++|+++|+.+
T Consensus 67 ~~~~~~~~~l~~~gl~~ 83 (134)
T TIGR01501 67 IDCKGLRQKCDEAGLEG 83 (134)
T ss_pred HHHHHHHHHHHHCCCCC
Confidence 45788999999999855
No 273
>PRK05943 50S ribosomal protein L25; Reviewed
Probab=20.56 E-value=80 Score=18.22 Aligned_cols=27 Identities=7% Similarity=0.019 Sum_probs=16.8
Q ss_pred cccEEEEcCCCCCCeeeccceehhhHHHHH
Q psy7399 66 RNVAALWSPLLRKGQVLENLMHITDWLPTL 95 (107)
Q Consensus 66 ~vP~ii~~p~~~~~~~~~~~~~~~Di~pTi 95 (107)
.||.++|+++..+ ..-.+...++...+
T Consensus 25 ~vPaViYG~~~~~---~~i~v~~~el~k~l 51 (94)
T PRK05943 25 KFPAIIYGGNEAP---VSIVLDHKDVINLQ 51 (94)
T ss_pred CCCEEEECCCCCc---EEEEEcHHHHHHHH
Confidence 6999999999764 12234444554433
No 274
>PF09861 DUF2088: Domain of unknown function (DUF2088); InterPro: IPR018657 This domain, found in various hypothetical proteins, has no known function. ; PDB: 2YJG_B.
Probab=20.50 E-value=2.2e+02 Score=19.07 Aligned_cols=33 Identities=18% Similarity=0.332 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHhCCCCC--eEEEEEcCCCCCC
Q psy7399 5 LDESVGRVIQSLEEEGLLGN--SLVVFISDNGGPT 37 (107)
Q Consensus 5 ~D~~ig~l~~~l~~~g~~~n--Tlii~tsDHG~~~ 37 (107)
.+..+..++++|++.|+.+. |+|+=++=|+...
T Consensus 70 ~~~il~~ll~~L~~~Gv~~~~i~ii~A~G~Hr~~t 104 (204)
T PF09861_consen 70 SDLILPALLEELEEAGVKDEDITIIIALGTHRPMT 104 (204)
T ss_dssp HHHHHHHHHHHHHT-T-TT-EEEEEEE-TTS----
T ss_pred HHHHHHHHHHHHHhcCCCccCEEEEEeCCCCCCCC
Confidence 35678899999999998654 5555567777664
No 275
>cd07411 MPP_SoxB_N Thermus thermophilus SoxB and related proteins, N-terminal metallophosphatase domain. SoxB (sulfur oxidation protein B) is a periplasmic thiosulfohydrolase and an essential component of the sulfur oxidation pathway in archaea and bacteria. SoxB has a dinuclear manganese cluster and is thought to catalyze the release of sulfate from a protein-bound cysteine S-thiosulfonate. SoxB is expressed from the sox (sulfur oxidation) gene cluster, which encodes 15 other sox genes, and has two domains, an N-terminal metallophosphatase domain and a C-terminal 5'-nucleotidase domain. SoxB binds the SoxYZ complex and is thought to function as a sulfate-thiohydrolase. SoxB is closely related to the UshA, YchR, and CpdB proteins, all of which have the same two-domain architecture. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzy
Probab=20.33 E-value=1.7e+02 Score=19.96 Aligned_cols=26 Identities=19% Similarity=0.220 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHhCCCCCeEEEEEcCCC
Q psy7399 8 SVGRVIQSLEEEGLLGNSLVVFISDNG 34 (107)
Q Consensus 8 ~ig~l~~~l~~~g~~~nTlii~tsDHG 34 (107)
.+..+++.+++.. ..|++++.++|.=
T Consensus 37 r~~~~v~~~~~~~-~~~~l~l~~GD~~ 62 (264)
T cd07411 37 HIATLIKRIRAER-NPNTLLLDGGDTW 62 (264)
T ss_pred HHHHHHHHHHHhc-CCCeEEEeCCCcc
Confidence 3456666666542 5788988888853
No 276
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=20.31 E-value=1.7e+02 Score=16.51 Aligned_cols=21 Identities=24% Similarity=0.495 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHhCCCCCeEEEEEc
Q psy7399 8 SVGRVIQSLEEEGLLGNSLVVFIS 31 (107)
Q Consensus 8 ~ig~l~~~l~~~g~~~nTlii~ts 31 (107)
.+.+++++|++.|. .++|+|+
T Consensus 28 ~~~~~l~~l~~~g~---~i~ivS~ 48 (139)
T cd01427 28 GVKEALKELKEKGI---KLALATN 48 (139)
T ss_pred CHHHHHHHHHHCCC---eEEEEeC
Confidence 45678888888753 5666664
No 277
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=20.23 E-value=2.5e+02 Score=19.59 Aligned_cols=16 Identities=19% Similarity=0.364 Sum_probs=13.4
Q ss_pred CCCeEEEEEcCCCCCC
Q psy7399 22 LGNSLVVFISDNGGPT 37 (107)
Q Consensus 22 ~~nTlii~tsDHG~~~ 37 (107)
.+.+++++.+|+|...
T Consensus 278 ~~~~vv~i~~d~g~ky 293 (299)
T TIGR01136 278 ADKVIVAILPDTGERY 293 (299)
T ss_pred CCCEEEEEECCCCccc
Confidence 3789999999999765
No 278
>TIGR02536 eut_hyp ethanolamine utilization protein. This family of proteins is found in operons for the polyhedral organelle-based degradation of ethanolamine. This family is not found in proteobacterial species which otherwise have the same suite of genes in the eut operon. Proteobacteria have two genes that are not found in non-proteobacteria which may complement this genes function, a phosphotransacetylase (pfam01515) and the EutJ protein (TIGR02529) of unknown function.
Probab=20.22 E-value=1.7e+02 Score=19.70 Aligned_cols=28 Identities=21% Similarity=0.420 Sum_probs=19.1
Q ss_pred HHHHHHHHHHH-HHhCCCCCeEEEEEcCC
Q psy7399 6 DESVGRVIQSL-EEEGLLGNSLVVFISDN 33 (107)
Q Consensus 6 D~~ig~l~~~l-~~~g~~~nTlii~tsDH 33 (107)
|+.+.++.+.+ +++++.++..|+|.+|-
T Consensus 2 ~~l~k~i~~~~~~~~~~~~~k~i~~~~~~ 30 (207)
T TIGR02536 2 DELIKRITEEICTSQQLEEKKYIVALGDS 30 (207)
T ss_pred HHHHHHHHHHHHHHcCCCcCceEEEecCC
Confidence 55566666665 45667778888888873
No 279
>PF09967 DUF2201: VWA-like domain (DUF2201); InterPro: IPR018698 This family of various hypothetical bacterial proteins has no known function.
Probab=20.18 E-value=1.6e+02 Score=17.82 Aligned_cols=26 Identities=31% Similarity=0.466 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhCCCCCeEEEEEcCCCCC
Q psy7399 9 VGRVIQSLEEEGLLGNSLVVFISDNGGP 36 (107)
Q Consensus 9 ig~l~~~l~~~g~~~nTlii~tsDHG~~ 36 (107)
+.-+++++++.. .+.+++|+.+| |..
T Consensus 69 f~pvf~~~~~~~-~~~~~vi~fTD-g~~ 94 (126)
T PF09967_consen 69 FRPVFEYLEENR-PRPSVVIYFTD-GEG 94 (126)
T ss_pred chHHHHHHHhcC-CCCCEEEEEeC-CCC
Confidence 355788888875 45677878889 654
No 280
>PRK15458 tagatose 6-phosphate aldolase subunit KbaZ; Provisional
Probab=20.16 E-value=1.7e+02 Score=22.13 Aligned_cols=29 Identities=14% Similarity=0.205 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhCCCCCeEEEEEcCCCCCC
Q psy7399 9 VGRVIQSLEEEGLLGNSLVVFISDNGGPT 37 (107)
Q Consensus 9 ig~l~~~l~~~g~~~nTlii~tsDHG~~~ 37 (107)
+..++..+.++--++.--||+.+||+...
T Consensus 67 F~~~V~~iA~~~gf~~~~iiLGGDHLGPn 95 (426)
T PRK15458 67 FRGFVCQLADSLNFPQEALILGGDHLGPN 95 (426)
T ss_pred HHHHHHHHHHHcCCChhhEEeecCCCCCc
Confidence 34555555444334444889999999873
No 281
>COG3439 Uncharacterized conserved protein [Function unknown]
Probab=20.07 E-value=1.3e+02 Score=18.95 Aligned_cols=29 Identities=24% Similarity=0.402 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHhCCCCCeEEEEEcCCCCCC
Q psy7399 5 LDESVGRVIQSLEEEGLLGNSLVVFISDNGGPT 37 (107)
Q Consensus 5 ~D~~ig~l~~~l~~~g~~~nTlii~tsDHG~~~ 37 (107)
.|+.++++.+++++.|+ .|+-.-||....
T Consensus 21 ~~E~i~~l~~~lk~~G~----~V~~~id~~e~l 49 (137)
T COG3439 21 FDETIERLEEKLKKNGF----KVFTEIDHAEAL 49 (137)
T ss_pred HHHHHHHHHHHHHhCCC----eEEEEecHHHHH
Confidence 68899999999999986 355557887765
No 282
>COG1488 PncB Nicotinic acid phosphoribosyltransferase [Coenzyme metabolism]
Probab=20.03 E-value=1.9e+02 Score=21.65 Aligned_cols=29 Identities=21% Similarity=0.164 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHhCCCCCeEEEEEcCCCCCC
Q psy7399 7 ESVGRVIQSLEEEGLLGNSLVVFISDNGGPT 37 (107)
Q Consensus 7 ~~ig~l~~~l~~~g~~~nTlii~tsDHG~~~ 37 (107)
....++...|++.|... ..|+.||.+...
T Consensus 276 ~~~~kvr~~ld~~G~~~--~~Ii~Sdg~lde 304 (405)
T COG1488 276 ELSEKVRAHLDKLGYDP--VKIIVSDGLLDE 304 (405)
T ss_pred HHHHHHHHHHHHcCCCc--eEEEEeCCcchH
Confidence 35667889999999877 777889888654
Done!