RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7399
(107 letters)
>gnl|CDD|225661 COG3119, AslA, Arylsulfatase A and related enzymes [Inorganic ion
transport and metabolism].
Length = 475
Score = 78.3 bits (193), Expect = 2e-18
Identities = 36/102 (35%), Positives = 56/102 (54%), Gaps = 11/102 (10%)
Query: 1 MLKSLDESVGRVIQSLEEEGLLGNSLVVFISDNGGPTVDSLHFHGNTASNWPLRGTKYSF 60
++ LD+ +GR++ +L+E GLL N++VVF SD+G A P RG K +
Sbjct: 265 CVRYLDDQIGRLLDALKELGLLDNTIVVFTSDHGAWL---------GAHGTPFRGYKGTL 315
Query: 61 HEGGVRNVAALWSP--LLRKGQVLENLMHITDWLPTLYFIAG 100
+EGG R + P + G+V++ L+ + D LPTL AG
Sbjct: 316 YEGGTRVPLIIRWPGGIKPGGRVVDALVSLIDLLPTLLDAAG 357
>gnl|CDD|216172 pfam00884, Sulfatase, Sulfatase.
Length = 332
Score = 56.7 bits (137), Expect = 7e-11
Identities = 38/101 (37%), Positives = 51/101 (50%), Gaps = 11/101 (10%)
Query: 1 MLKSLDESVGRVIQSLEEEGLLGNSLVVFISDNGGPTVDSLHFHGNTASNWPLRGTKYSF 60
L D+++GRV++ LE GLL N+LVV+ SD+G + HG N P
Sbjct: 207 SLLYTDDAIGRVLEKLEN-GLLDNTLVVYTSDHGPSLGGGGYLHGGKTDNAP-------- 257
Query: 61 HEGGVRNVAALWSP-LLRKGQVLENLMHITDWLPTLYFIAG 100
EGG R +WSP KGQ E L+ D PT+ +AG
Sbjct: 258 -EGGYRVPLLIWSPGGKPKGQKNEALVSHVDLFPTILDLAG 297
>gnl|CDD|237491 PRK13759, PRK13759, arylsulfatase; Provisional.
Length = 485
Score = 51.2 bits (123), Expect = 6e-09
Identities = 29/97 (29%), Positives = 52/97 (53%), Gaps = 10/97 (10%)
Query: 5 LDESVGRVIQSLEEEGLLGNSLVVFISDNGGPTVDSLHFHGNTASNWPLRG-TKYSFHEG 63
+D +GR +Q+L+E GLL N++++F+SD+G D L H +P G F
Sbjct: 277 IDHQIGRFLQALKEFGLLDNTIILFVSDHG----DMLGDHYLFRKGYPYEGSAHIPFI-- 330
Query: 64 GVRNVAALWSPLLRKGQVLENLMHITDWLPTLYFIAG 100
+ + L + +G V++ ++ + D +PTL +AG
Sbjct: 331 -IYDPGGLLAG--NRGTVIDQVVELRDIMPTLLDLAG 364
>gnl|CDD|234202 TIGR03417, chol_sulfatase, choline-sulfatase.
Length = 500
Score = 43.5 bits (103), Expect = 3e-06
Identities = 33/103 (32%), Positives = 51/103 (49%), Gaps = 26/103 (25%)
Query: 5 LDESVGRVIQSLEEEGLLGNSLVVFISDNGGPTVDSLHFHGNTASNWPLRGT--KYSFHE 62
+D+ +G ++ +LEE ++++VF SD+G D L G RG K SF E
Sbjct: 262 IDDKIGELLDTLEETRQADDTIIVFTSDHG----DML---GE-------RGLWYKMSFFE 307
Query: 63 GGVR---NVAA--LWSPLLRKGQVLENLMHITDWLPTLYFIAG 100
G R +AA ++P G+V + + D LPTL +AG
Sbjct: 308 GSARVPLMIAAPGRFAP----GRVDAPVSTL-DLLPTLVDLAG 345
>gnl|CDD|225625 COG3083, COG3083, Predicted hydrolase of alkaline phosphatase
superfamily [General function prediction only].
Length = 600
Score = 38.2 bits (89), Expect = 3e-04
Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 20/99 (20%)
Query: 2 LKSLDESVGRVIQSLEEEGLLGNSLVVFISDNGGPTVDSLHFHGNTASNWPLRGTKYSFH 61
L+ +D +GRV++ L GLL N++V+ +D+G F+ + W GT YS +
Sbjct: 429 LREVDSQIGRVLEQLRNSGLLDNTVVIITADHG------EEFNEEEQNYWG-HGTNYSRY 481
Query: 62 EGGVRNVAALWSPLLR--KGQVLENLMHIT---DWLPTL 95
+ V PL+ G + H+T D + TL
Sbjct: 482 QLQV--------PLVIHWPGTPAGRVNHLTSHLDLMTTL 512
>gnl|CDD|216635 pfam01663, Phosphodiest, Type I phosphodiesterase / nucleotide
pyrophosphatase. This family consists of
phosphodiesterases, including human plasma-cell membrane
glycoprotein PC-1 / alkaline phosphodiesterase i /
nucleotide pyrophosphatase (nppase). These enzymes
catalyze the cleavage of phosphodiester and
phosphosulfate bonds in NAD, deoxynucleotides and
nucleotide sugars. Also in this family is ATX an
autotaxin, tumour cell motility-stimulating protein
which exhibits type I phosphodiesterases activity. The
alignment encompasses the active site. Also present with
in this family is 60-kDa Ca2+-ATPase form F. odoratum.
Length = 342
Score = 37.4 bits (87), Expect = 5e-04
Identities = 15/39 (38%), Positives = 28/39 (71%)
Query: 1 MLKSLDESVGRVIQSLEEEGLLGNSLVVFISDNGGPTVD 39
L+ +D ++GR++++L+E GLL N+ V+ +SD+G V
Sbjct: 192 ALRRVDRAIGRLLEALDERGLLENTNVIVVSDHGMTPVS 230
>gnl|CDD|236969 PRK11753, PRK11753, DNA-binding transcriptional dual regulator Crp;
Provisional.
Length = 211
Score = 33.0 bits (76), Expect = 0.012
Identities = 12/26 (46%), Positives = 20/26 (76%), Gaps = 3/26 (11%)
Query: 7 ESVGRVIQSLEEEGLL---GNSLVVF 29
E VGRV++ LE++GL+ G ++VV+
Sbjct: 183 EMVGRVLKMLEDQGLISAHGKTIVVY 208
>gnl|CDD|217311 pfam02995, DUF229, Protein of unknown function (DUF229). Members
of this family are uncharacterized. They are 500-1200
amino acids in length and share a long region
conservation that probably corresponds to several
domains. The Go annotation for the protein indicates
that it is involved in nematode larval development and
has a positive regulation on growth rate.
Length = 492
Score = 32.3 bits (74), Expect = 0.028
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 1 MLKSLDESVGRVIQSLEEEGLLGNSLVVFISDNG 34
+LDE + ++ L E GLL N++V+F+SD+G
Sbjct: 307 YASALDEDLLNYLKKLHERGLLENTIVIFMSDHG 340
>gnl|CDD|179157 PRK00889, PRK00889, adenylylsulfate kinase; Provisional.
Length = 175
Score = 28.8 bits (65), Expect = 0.35
Identities = 13/21 (61%), Positives = 17/21 (80%)
Query: 2 LKSLDESVGRVIQSLEEEGLL 22
L+SL+ESV +V+Q LEE G L
Sbjct: 154 LESLEESVDKVLQKLEELGYL 174
>gnl|CDD|178178 PLN02564, PLN02564, 6-phosphofructokinase.
Length = 484
Score = 28.9 bits (65), Expect = 0.51
Identities = 10/17 (58%), Positives = 14/17 (82%)
Query: 79 GQVLENLMHITDWLPTL 95
G VLE++ H+TD+LP L
Sbjct: 13 GYVLEDVPHLTDYLPDL 29
>gnl|CDD|220000 pfam08747, DUF1788, Domain of unknown function (DUF1788). Putative
uncharacterized domain in proteins of length around 200
amino acids.
Length = 125
Score = 27.5 bits (62), Expect = 0.92
Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 68 VAALWSPLLRKGQVLENLMHITDWLPTLYFIAGK 101
V ++ PL+R +L NL + +P + F G+
Sbjct: 69 VGEVY-PLIRSHNLLNNLHSVMGDVPLVMFYPGE 101
>gnl|CDD|224287 COG1368, MdoB, Phosphoglycerol transferase and related proteins,
alkaline phosphatase superfamily [Cell envelope
biogenesis, outer membrane].
Length = 650
Score = 27.8 bits (62), Expect = 1.1
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 5 LDESVGRVIQSLEEEGLLGNSLVVFISDNGGP 36
DE++G+ I L++ GL NS++V D+ G
Sbjct: 463 ADEALGQFIDKLKKSGLYKNSVIVLYGDHYGI 494
>gnl|CDD|180119 PRK05500, PRK05500, bifunctional orotidine 5'-phosphate
decarboxylase/orotate phosphoribosyltransferase protein;
Validated.
Length = 477
Score = 27.3 bits (61), Expect = 1.5
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 8 SVGRVIQSLEEEGLLGNSLVVFISDNGGPTVDSLHFHGNTA 48
SV + L+ GL +VVFI D+ D L HG A
Sbjct: 408 SVMEGAEKLKSAGLNVRDIVVFI-DHEQGVKDKLQSHGYQA 447
>gnl|CDD|236961 PRK11716, PRK11716, DNA-binding transcriptional regulator IlvY;
Provisional.
Length = 269
Score = 27.1 bits (61), Expect = 1.6
Identities = 13/23 (56%), Positives = 14/23 (60%), Gaps = 4/23 (17%)
Query: 11 RVIQSLEEEGLLGNSLVVFISDN 33
R IQ LEEE LG L F+ DN
Sbjct: 10 RQIQRLEEE--LGQPL--FVRDN 28
>gnl|CDD|236834 PRK11067, PRK11067, outer membrane protein assembly factor YaeT;
Provisional.
Length = 803
Score = 27.3 bits (61), Expect = 1.6
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 10/51 (19%)
Query: 6 DESVGRVIQSL------EEEGLL--GNSLVVFISDNGGPTVDSLHFHGNTA 48
DE + I++L E+ +L GN+L+V + + PT+ S+ F GN +
Sbjct: 56 DEDISNTIRALFATGNFEDVRVLRDGNTLLVQVKER--PTIASITFSGNKS 104
>gnl|CDD|234928 PRK01254, PRK01254, hypothetical protein; Provisional.
Length = 707
Score = 27.3 bits (61), Expect = 1.7
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 13/45 (28%)
Query: 4 SLDESVGRVIQSLEEEGLL-----------GNSLVVFISDNGGPT 37
S+ E GR+IQS EE ++ G + V ISD GGPT
Sbjct: 390 SITEHEGRIIQSRSEESIINEIEAIRDKVPGFTGV--ISDLGGPT 432
>gnl|CDD|236811 PRK10987, PRK10987, regulatory protein AmpE; Provisional.
Length = 284
Score = 26.8 bits (60), Expect = 2.2
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 73 SPLLRKGQVLENLMHITDWLP 93
+PL R ++ L+H+ DWLP
Sbjct: 180 TPLPRAQSGIDALLHVLDWLP 200
>gnl|CDD|203515 pfam06758, DUF1220, Repeat of unknown function (DUF1220).
Length = 67
Score = 25.8 bits (57), Expect = 2.3
Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 7/54 (12%)
Query: 9 VGRVIQSLEEEGLLGNSLVVFISDNGGPTVDSLHFHGNTASNWPLRGTKYSFHE 62
+ R + +EE +L +SL S P+ H S P R T YS E
Sbjct: 11 LSRELLEVEEPEVLQDSLDECYST---PSNY----HELPDSYQPYRSTFYSLEE 57
>gnl|CDD|225251 COG2376, DAK1, Dihydroxyacetone kinase [Carbohydrate transport and
metabolism].
Length = 323
Score = 26.5 bits (59), Expect = 2.6
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 1 MLKSLDESVGRVIQSLEEEGLLGNSLVVFISDNGG 35
+LKS DE ++ L E L + + V ++ G
Sbjct: 225 ILKSADELAKELVDKLLAEKLEQDEVAVLVNGLGA 259
>gnl|CDD|219398 pfam07394, DUF1501, Protein of unknown function (DUF1501). This
family contains a number of hypothetical bacterial
proteins of unknown function approximately 400 residues
long.
Length = 393
Score = 26.5 bits (59), Expect = 2.7
Identities = 11/33 (33%), Positives = 23/33 (69%)
Query: 2 LKSLDESVGRVIQSLEEEGLLGNSLVVFISDNG 34
K LD+++ +++ L++ GLL ++LVV+ + G
Sbjct: 271 AKELDQALAALLKDLKQRGLLDDTLVVWGGEFG 303
>gnl|CDD|235756 PRK06259, PRK06259, succinate dehydrogenase/fumarate reductase
iron-sulfur subunit; Provisional.
Length = 486
Score = 26.1 bits (58), Expect = 3.6
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 13/34 (38%)
Query: 73 SPLLRKGQVLENLMHITDWLPTLYFIAGKEKNID 106
SPL+R GQ TD L K+KN++
Sbjct: 304 SPLIRTGQ--------TDVAEEL-----KKKNLE 324
>gnl|CDD|214740 smart00602, VPS10, VPS10 domain.
Length = 612
Score = 25.8 bits (57), Expect = 4.7
Identities = 24/79 (30%), Positives = 29/79 (36%), Gaps = 23/79 (29%)
Query: 4 SLDESVGRVIQSLEEEGLLGNSLV------VFISDNGGPT----VDSLHF-----HGN-- 46
S + G +I S G +G+ L FIS +GG T D H HG
Sbjct: 351 SSKSAPGIIIAS----GNVGDGLASYWEPSTFISSDGGLTWRLVFDGPHLYAYGDHGGII 406
Query: 47 --TASNWPLRGTKYSFHEG 63
N P KYS EG
Sbjct: 407 VAIEYNSPTNELKYSTDEG 425
>gnl|CDD|128696 smart00419, HTH_CRP, helix_turn_helix, cAMP Regulatory protein.
Length = 48
Score = 23.9 bits (53), Expect = 6.3
Identities = 8/16 (50%), Positives = 13/16 (81%)
Query: 7 ESVGRVIQSLEEEGLL 22
E+V R ++ LE+EGL+
Sbjct: 23 ETVSRTLKRLEKEGLI 38
>gnl|CDD|236255 PRK08385, PRK08385, nicotinate-nucleotide pyrophosphorylase;
Provisional.
Length = 278
Score = 25.4 bits (56), Expect = 7.5
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Query: 1 MLKSLD-ESVGRVIQSLEEEGLLGNSLVVFISDNGGPTVDSL 41
ML ++ E + VI++L+ EGL V I +GG T +++
Sbjct: 207 MLDNMTPEEIREVIEALKREGLRER---VKIEVSGGITPENI 245
>gnl|CDD|218112 pfam04497, Pox_E2-like, Poxviridae protein. This family of
proteins is restricted to Poxviridae. It contains a
number of differently named uncharacterized proteins.
Length = 727
Score = 25.4 bits (56), Expect = 8.4
Identities = 7/33 (21%), Positives = 12/33 (36%)
Query: 75 LLRKGQVLENLMHITDWLPTLYFIAGKEKNIDS 107
L R G + ++ W P L + K +
Sbjct: 556 LARHGLIYPPFIYFPSWGPLLDLLNNKLIFGND 588
>gnl|CDD|173947 cd08188, Fe-ADH4, Iron-containing alcohol dehydrogenases-like.
Iron-containing alcohol dehydrogenase-like. Alcohol
dehydrogenase catalyzes the reduction of acetaldehyde
to alcohol with NADP as cofactor. Its activity requires
iron ions. The protein structure represents a
dehydroquinate synthase-like fold and is belonged to
the alcohol dehydrogenase-like superfamily. They are
distinct from other alcohol dehydrogenases which
contain different protein domains. Proteins of this
family have not been characterized. Their specific
function is unknown.
Length = 377
Score = 25.2 bits (56), Expect = 8.7
Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 5/27 (18%)
Query: 9 VGRVIQSLEEEGLLGNSLVVF--ISDN 33
V RVI+SLEE GL VVF +S N
Sbjct: 45 VDRVIESLEEAGL---EYVVFSDVSPN 68
>gnl|CDD|183987 PRK13343, PRK13343, F0F1 ATP synthase subunit alpha; Provisional.
Length = 502
Score = 25.3 bits (56), Expect = 9.0
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 8 SVGRVIQSLEEEGLLGNSLVV 28
+V RVI++L E G L + VV
Sbjct: 204 AVARVIETLREHGALEYTTVV 224
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.136 0.413
Gapped
Lambda K H
0.267 0.0682 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,507,979
Number of extensions: 459784
Number of successful extensions: 425
Number of sequences better than 10.0: 1
Number of HSP's gapped: 419
Number of HSP's successfully gapped: 34
Length of query: 107
Length of database: 10,937,602
Length adjustment: 72
Effective length of query: 35
Effective length of database: 7,744,114
Effective search space: 271043990
Effective search space used: 271043990
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.3 bits)