RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7399
(107 letters)
>1fsu_A N-acetylgalactosamine-4-sulfatase; glycosaminoglycan degradation,
hydrolase, glycopr lysosome; HET: ALS NAG; 2.50A {Homo
sapiens} SCOP: c.76.1.2
Length = 492
Score = 130 bits (329), Expect = 2e-37
Identities = 48/111 (43%), Positives = 65/111 (58%), Gaps = 12/111 (10%)
Query: 1 MLKSLDESVGRVIQSLEEEGLLGNSLVVFISDNGGPTVDSLHFHGNTASNWPLRGTKYSF 60
M+ +DE+VG V +L+ GL N++ +F +DNGG T +NWPLRG K+S
Sbjct: 228 MVSLMDEAVGNVTAALKSSGLWNNTVFIFSTDNGGQT-------LAGGNNWPLRGRKWSL 280
Query: 61 HEGGVRNVAALWSPLL-RKGQVLENLMHITDWLPTLYFIAG----KEKNID 106
EGGVR V + SPLL +KG L+HI+DWLPTL +A K +D
Sbjct: 281 WEGGVRGVGFVASPLLKQKGVKNRELIHISDWLPTLVKLARGHTNGTKPLD 331
>3ed4_A Arylsulfatase; structural genomics, PSI-2, protein structure INI
NEW YORK structural genomix research consortium,
NYSGXRC, transferase; 1.70A {Escherichia coli}
Length = 502
Score = 109 bits (274), Expect = 1e-29
Identities = 32/113 (28%), Positives = 53/113 (46%), Gaps = 7/113 (6%)
Query: 1 MLKSLDESVGRVIQSLEEEGLLGNSLVVFISDNGGPTV--DSLHFHGNTASNWPLRGTKY 58
+ LD VG+V+ ++ G N++V+F SDNG T ++ LRG K
Sbjct: 273 NISYLDAQVGKVLDKIKAMGEEDNTIVIFTSDNGPVTREARKVYELNLAGETDGLRGRKD 332
Query: 59 SFHEGGVRNVAALWSP-LLRKGQVLENLMHITDWLPTLYFIAG----KEKNID 106
+ EGG+R A + L +G V + ++ DW+PTL + ++ D
Sbjct: 333 NLWEGGIRVPAIIKYGKHLPQGMVSDTPVYGLDWMPTLAKMMNFKLPTDRTFD 385
>1auk_A Arylsulfatase A; cerebroside-3-sulfate hydrolysis, lysosomal
enzyme, hydrolas; HET: NDG NAG; 2.10A {Homo sapiens}
SCOP: c.76.1.2 PDB: 1n2k_A* 1n2l_A* 1e1z_P* 1e2s_P*
1e3c_P* 1e33_P*
Length = 489
Score = 103 bits (258), Expect = 2e-27
Identities = 36/110 (32%), Positives = 52/110 (47%), Gaps = 7/110 (6%)
Query: 1 MLKSLDESVGRVIQSLEEEGLLGNSLVVFISDNGGPTVDSLHFHGNTASNWPLRGTKYSF 60
L LD +VG ++ ++ + GLL +LV+F +DN GP + G + LR K +
Sbjct: 232 SLMELDAAVGTLMTAIGDLGLLEETLVIFTADN-GPETMRMSRGG---CSGLLRCGKGTT 287
Query: 61 HEGGVRNVAALWSPLLRKGQVLENLMHITDWLPTLYFIAG---KEKNIDS 107
+EGGVR A + P V L D LPTL +AG +D
Sbjct: 288 YEGGVREPALAFWPGHIAPGVTHELASSLDLLPTLAALAGAPLPNVTLDG 337
>1p49_A Steryl-sulfatase; steroid biosynthesis, steroid sulfatase, estrone
sulfate, dehydroepiandrosterone sulfate, human placental
enzyme; HET: ALS BOG NAG; 2.60A {Homo sapiens} SCOP:
c.76.1.2
Length = 562
Score = 99.8 bits (248), Expect = 4e-26
Identities = 32/113 (28%), Positives = 57/113 (50%), Gaps = 6/113 (5%)
Query: 1 MLKSLDESVGRVIQSLEEEGLLGNSLVVFISDNGGPTVD-SLHFHGNTASNWPLRGTKYS 59
++ +D SVG+++ L+E L ++L+ F SD G + S + SN +G K +
Sbjct: 290 AVEEMDWSVGQILNLLDELRLANDTLIYFTSDQGAHVEEVSSKGEIHGGSNGIYKGGKAN 349
Query: 60 FHEGGVRNVAALWSP-LLRKGQVLENLMHITDWLPTLYFIAG----KEKNIDS 107
EGG+R L P +++ GQ ++ D PT+ +AG +++ ID
Sbjct: 350 NWEGGIRVPGILRWPRVIQAGQKIDEPTSNMDIFPTVAKLAGAPLPEDRIIDG 402
>1hdh_A Arylsulfatase; hydrolase, formylglycine hydrate; 1.3A {Pseudomonas
aeruginosa} SCOP: c.76.1.2
Length = 536
Score = 85.3 bits (211), Expect = 5e-21
Identities = 33/134 (24%), Positives = 52/134 (38%), Gaps = 34/134 (25%)
Query: 1 MLKSLDESVGRVIQSLEEEGLLGNSLVVFISDNGGPTVDSLHFHGNT------------- 47
M++ +D ++GRV+ L +G L N+ V+F+SDNG F
Sbjct: 286 MVERMDWNIGRVVDYLRRQGELDNTFVLFMSDNGAEGALLEAFPKFGPDLLGFLDRHYDN 345
Query: 48 --------------------ASNWPLRGTKYSFHEGGVRNVAAL-WSPLLRKGQVLENLM 86
A+ P R K +GG+R A + + L R+G +
Sbjct: 346 SLENIGRANSYVWYGPRWAQAATAPSRLYKAFTTQGGIRVPALVRYPRLSRQGAISHAFA 405
Query: 87 HITDWLPTLYFIAG 100
+ D PTL +AG
Sbjct: 406 TVMDVTPTLLDLAG 419
>2qzu_A Putative sulfatase YIDJ; Q64XZ4_bacfr, arylsulfatase, BFR123, NESG,
structural genomics, PSI-2, protein structure
initiative; 1.70A {Bacteroides fragilis}
Length = 491
Score = 84.7 bits (210), Expect = 8e-21
Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 15/108 (13%)
Query: 1 MLKSLDESVGRVIQSLEEEGLLGNSLVVFISDNGGPTVDSLHFHGNTASNWPLRGTKYSF 60
+ +DE+VGR+I++L++ L N++VVF SD+G K F
Sbjct: 282 CITGVDENVGRIIEALKQNNLFDNTIVVFTSDHGI------------CMGAHENAGKDIF 329
Query: 61 HEGGVRNVAAL--WSPLLRKGQVLENLMHITDWLPTLYFIAGKEKNID 106
+E +R + + W ++ + ++ D PTL + G K I
Sbjct: 330 YEESMR-IPMILSWPDQIKPRKSDPLMIAFADLYPTLLSMMGFSKEIP 376
>3b5q_A Putative sulfatase YIDJ; NP_810509.1, structural genomics, joint
center for structural genomics, JCSG; HET: EPE; 2.40A
{Bacteroides thetaiotaomicron vpi-5482}
Length = 482
Score = 62.3 bits (152), Expect = 6e-13
Identities = 22/109 (20%), Positives = 44/109 (40%), Gaps = 26/109 (23%)
Query: 1 MLKSLDESVGRVIQSLEEEGLLGNSLVVFISDNGGPTVDSLHFHGNTASNWPLRGTKYSF 60
K + + V V+++L N++VV ++D+G D + H + SF
Sbjct: 253 YTKMVSKQVDSVLKALYSTPAGRNTIVVIMADHG----DGMASHR-------MVTKHISF 301
Query: 61 HEGGVRNVAALWSPLL-------RKGQVLENL--MHITDWLPTLYFIAG 100
++ P + ++ + +++L D LPTL +AG
Sbjct: 302 YDEMTN------VPFIFAGPGIKQQKKPVDHLLTQPTLDLLPTLCDLAG 344
>2vqr_A Putative sulfatase; phosphonate monoester hydrolase, hydrolase,
plasmid, formylglycine, phosphodiesterase; 1.42A
{Rhizobium leguminosarum BV} PDB: 2w8s_A
Length = 543
Score = 60.5 bits (147), Expect = 2e-12
Identities = 24/110 (21%), Positives = 44/110 (40%), Gaps = 26/110 (23%)
Query: 1 MLKSLDESVGRVIQSLEEEGLLGNSLVVFISDNGGPTVDSLHFHGNTASNWPLRGTKYSF 60
++ +D+ +GRV L+E G ++L++F SD+G + L H K +
Sbjct: 322 LITEVDDCLGRVFSYLDETGQWDDTLIIFTSDHG----EQLGDHH--------LLGKIGY 369
Query: 61 HEGGVRNVAALWSPLL--------RKGQVLENLMHITDWLPTLYFIAGKE 102
++ R PL+ R G + D +PT+ G +
Sbjct: 370 NDPSFR------IPLVIKDAGENARAGAIESGFTESIDVMPTILDWLGGK 413
>3lxq_A Uncharacterized protein VP1736; alkaline, phosphatase, MDOB,
sulfatase, PSI, MCSG, structural genomics; 1.95A {Vibrio
parahaemolyticus}
Length = 450
Score = 35.2 bits (81), Expect = 0.002
Identities = 4/32 (12%), Positives = 14/32 (43%)
Query: 5 LDESVGRVIQSLEEEGLLGNSLVVFISDNGGP 36
D ++G ++ +++ + I+D+
Sbjct: 278 SDYALGTFFDKAKKSSYWDDTIFIVIADHDAR 309
>2w5q_A Processed glycerol phosphate lipoteichoic acid synthase;
transmembrane, cell WALL biogenesis/degradation, LTAS,
membrane, secreted; 1.20A {Staphylococcus aureus} PDB:
2w5s_A* 2w5t_A* 2w5r_A*
Length = 424
Score = 34.9 bits (80), Expect = 0.003
Identities = 19/96 (19%), Positives = 37/96 (38%), Gaps = 5/96 (5%)
Query: 5 LDESVGRVIQSLEEEGLLGNSLVVFISDNGGPTVDSLHFHGNTASNWPLRGTKYSFHEGG 64
LDE++ I L+++GL NS+++ D+ G + + + +
Sbjct: 231 LDEALEEYINDLKKKGLYDNSVIMIYGDHYGISENHNNAMEKLLGEKITPAKFTDLN--- 287
Query: 65 VRNVAALWSPLLRKGQVLENLMHITDWLPTLYFIAG 100
R + P G + D +PT+ +AG
Sbjct: 288 -RTGFWIKIPGK-SGGINNEYAGQVDVMPTILHLAG 321
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.6 bits (79), Expect = 0.003
Identities = 24/133 (18%), Positives = 43/133 (32%), Gaps = 50/133 (37%)
Query: 12 VIQSLEEEGLL-------GNSL-----------VVFISDNGGPTVDSLHFHGNTASNWPL 53
+ L+ +GL+ G+SL V+ I V+ + + G T
Sbjct: 1743 AFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIES----LVEVVFYRGMTMQVAVP 1798
Query: 54 RG----TKY------------SFHEGGVRNVAALWSPLLRKGQVLE----NLMHITDWLP 93
R + Y SF + ++ V R G ++E N+ +
Sbjct: 1799 RDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGK--RTGWLVEIVNYNVENQQ---- 1852
Query: 94 TLYFIAGKEKNID 106
Y AG + +D
Sbjct: 1853 --YVAAGDLRALD 1863
>2w8d_A Processed glycerol phosphate lipoteichoic acid SY; transferase,
phosphatase, cell membrane, transmembrane, LTA,
membrane, secreted, cell WALL; HET: TPO PG4; 2.35A
{Bacillus subtilis}
Length = 436
Score = 32.5 bits (74), Expect = 0.016
Identities = 17/97 (17%), Positives = 38/97 (39%), Gaps = 6/97 (6%)
Query: 5 LDESVGRVIQSLEEEGLLGNSLVVFISDNGGPTVDSLHFHGNTASNWPLRGTKYSFHEGG 64
LD+S+ + L+++GL S++V D+ G + + + +
Sbjct: 231 LDQSIEQFFNDLKKDGLYDKSIIVMYGDHYGISENHNKAMAKVLGKDEITDYDNAQL--- 287
Query: 65 VRNV-AALWSPLLRKGQVLENLMHITDWLPTLYFIAG 100
+ V + + + KG+ + D PT+ + G
Sbjct: 288 -QRVPLFIHAAGV-KGEKVHKYAGDVDVAPTILHLLG 322
>2gso_A Phosphodiesterase-nucleotide pyrophosphatase; alpha beta, NPP,
hydrolase; 1.30A {Xanthomonas axonopodis PV} PDB: 2gsn_A
2gsu_A* 2rh6_A*
Length = 393
Score = 31.2 bits (70), Expect = 0.047
Identities = 6/32 (18%), Positives = 21/32 (65%)
Query: 1 MLKSLDESVGRVIQSLEEEGLLGNSLVVFISD 32
++++D ++GR++ ++ +G + ++ +SD
Sbjct: 187 AVRAVDAAIGRLLAGMQRDGTRARTNIIVVSD 218
>1y23_A HIT, histidine triad protein; HIT protein, PKCI-1, cell-cycle
regulation, NYSGXRC, structural genomics, protein
structure initiative; 2.30A {Bacillus subtilis} SCOP:
d.13.1.1
Length = 145
Score = 26.5 bits (59), Expect = 1.2
Identities = 9/63 (14%), Positives = 21/63 (33%), Gaps = 9/63 (14%)
Query: 9 VGRVIQSLEEEGLL-GNSLVVFISDNGGPTVDSLHFH--------GNTASNWPLRGTKYS 59
V ++ +++ +E G + + + G +V H H + W Y
Sbjct: 68 VPKIARAIRDEFEPIGLNTLNNNGEKAGQSVFHYHMHIIPRYGKGDGFGAVWKTHADDYK 127
Query: 60 FHE 62
+
Sbjct: 128 PED 130
>3ksv_A Uncharacterized protein; HIT family, structural genomics,
structural genomics of PATH protozoa consortium, SGPP,
unknown function; 1.90A {Leishmania major}
Length = 149
Score = 26.5 bits (59), Expect = 1.3
Identities = 4/35 (11%), Positives = 12/35 (34%), Gaps = 1/35 (2%)
Query: 11 RVIQSLEEEGLL-GNSLVVFISDNGGPTVDSLHFH 44
+ +++ +++ V +HFH
Sbjct: 76 KASRAVAGPDGSMQYNVLQNNGSLAHQEVPHVHFH 110
>3oj7_A Putative histidine triad family protein; hydrolase, structural
genomics, seattle structural genomics for infectious
disease, ssgcid; 1.40A {Entamoeba histolytica} PDB:
3omf_A* 3oxk_A*
Length = 117
Score = 26.3 bits (59), Expect = 1.3
Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 17 EEEGLLGNSLVVFISDNGGPTVDSLHFH--GNTASNWP 52
++E G +V I ++ G TV +HFH G W
Sbjct: 78 KKECPEGYRVVNNIGEDAGQTVKHIHFHILGGKKLAWD 115
>3lp9_A LS-24; SEED albumin, plant protein; HET: SPM; 2.20A {Lathyrus
sativus} PDB: 3s0l_A 3v6n_A 3s18_A
Length = 227
Score = 26.6 bits (58), Expect = 1.6
Identities = 12/61 (19%), Positives = 19/61 (31%), Gaps = 2/61 (3%)
Query: 46 NTASNWPLRGTKYSFHEGGVRNVAALWSPLLRKGQVLENLMHITDWLPTLYFIAGKEKNI 105
N A Y F + V ++P + +VL + D +L I
Sbjct: 7 NAAFRSSKNNEAYFFI--NDKYVLLDYAPGSSRDKVLYGPTPVRDGFKSLNQTIFGSYGI 64
Query: 106 D 106
D
Sbjct: 65 D 65
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR
network, structural genomics, GPCR membrane 7TM NOP ORL1
cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo
sapiens}
Length = 434
Score = 26.3 bits (58), Expect = 1.9
Identities = 7/11 (63%), Positives = 10/11 (90%)
Query: 20 GLLGNSLVVFI 30
GLLGN LV+++
Sbjct: 139 GLLGNCLVMYV 149
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP;
2.31A {Aquifex aeolicus}
Length = 546
Score = 26.5 bits (58), Expect = 2.0
Identities = 5/22 (22%), Positives = 15/22 (68%)
Query: 3 KSLDESVGRVIQSLEEEGLLGN 24
+ +ES ++++ L++EG + +
Sbjct: 525 LTPEESALKILEFLKKEGFIKD 546
>3lb5_A HIT-like protein involved in cell-cycle regulatio; niaid, seattle
structural genomics center for infectious DIS ssgcid,
histidine triad; 1.90A {Bartonella henselae}
Length = 161
Score = 25.8 bits (57), Expect = 2.3
Identities = 9/37 (24%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 9 VGRVIQSLEEEGLL-GNSLVVFISDNGGPTVDSLHFH 44
V ++ +++++ G +++ F TV LHFH
Sbjct: 91 VQKIAKAVKKAFQADGITVMQFNEAASQQTVYHLHFH 127
>4egu_A Histidine triad (HIT) protein; structural genomics, center for
structural genomics of infec diseases, csgid, HIT
domain, unknown function; HET: 5GP; 0.95A {Clostridium
difficile}
Length = 119
Score = 25.6 bits (57), Expect = 2.5
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 5/41 (12%)
Query: 17 EEEGLLGNS--LVVFISDNGGPTVDSLHFH---GNTASNWP 52
+E+G ++ +GG V LH+H G N+
Sbjct: 75 KEKGFDQTGFRVINNCGSDGGQEVKHLHYHILAGKKLPNYE 115
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural
genomics, PSI-2, protein structure initiative; HET: ITD
OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A*
3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Length = 502
Score = 26.0 bits (57), Expect = 3.1
Identities = 5/11 (45%), Positives = 9/11 (81%)
Query: 20 GLLGNSLVVFI 30
G++GN LV+ +
Sbjct: 62 GIVGNGLVILV 72
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase,
transferase, sulfate metabolism, nucleotide 2 kinase;
2.95A {Thiobacillus denitrificans}
Length = 552
Score = 26.0 bits (57), Expect = 3.2
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 3 KSLDESVGRVIQSLEEEGLL 22
++DE+V +++ LE EG L
Sbjct: 524 LAIDEAVQQILLKLEHEGYL 543
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled
receptor, 7 transmembrane receptor, signal
protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A
{Mus musculus} PDB: 4ej4_A* 4djh_A*
Length = 464
Score = 25.7 bits (56), Expect = 3.5
Identities = 6/11 (54%), Positives = 9/11 (81%)
Query: 20 GLLGNSLVVFI 30
GL GN LV+++
Sbjct: 31 GLFGNFLVMYV 41
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 25.6 bits (56), Expect = 3.9
Identities = 16/91 (17%), Positives = 26/91 (28%), Gaps = 18/91 (19%)
Query: 28 VFISDNGGPTVDS-------LHFHGNTASNWPLRGTKYSFHEG--GVRNVAALWSPLLRK 78
V + ++ P S H HG+ + + T + G R
Sbjct: 926 VIVEEDLEPFEASKETAEQFKHQHGDKVDIFEIPETGEYSVKLLKGATLYIPKALRFDRL 985
Query: 79 --GQVLENLMHITDWLPTLYFIAGKE-KNID 106
GQ+ T W Y I+ +D
Sbjct: 986 VAGQI------PTGWNAKTYGISDDIISQVD 1010
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix,
transcription factor, CAMP-B proteins, CAMP receptor
protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP:
a.4.5.4 b.82.3.2
Length = 207
Score = 25.3 bits (56), Expect = 4.0
Identities = 15/26 (57%), Positives = 21/26 (80%), Gaps = 3/26 (11%)
Query: 7 ESVGRVIQSLEEEGLL---GNSLVVF 29
E VGRV++SLEE+GL+ G ++VVF
Sbjct: 179 EMVGRVLKSLEEQGLVHVKGKTMVVF 204
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met
nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A
{Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A*
1m7h_A* 3cr7_A*
Length = 211
Score = 25.3 bits (56), Expect = 4.0
Identities = 5/20 (25%), Positives = 12/20 (60%)
Query: 3 KSLDESVGRVIQSLEEEGLL 22
+ ++V ++I L+ +G L
Sbjct: 187 LPVQDAVKQIIDYLDTKGYL 206
>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus
musculus}
Length = 550
Score = 25.4 bits (56), Expect = 4.4
Identities = 3/31 (9%), Positives = 12/31 (38%)
Query: 6 DESVGRVIQSLEEEGLLGNSLVVFISDNGGP 36
++Q ++ + + + ++DN
Sbjct: 491 AAQESLILQPRKDLEIGEYKIHLKLADNQNK 521
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1
(PAPS synthetase...; NMP-kinase fold, protein in complex
with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens}
PDB: 2pey_A* 2ax4_A*
Length = 179
Score = 25.2 bits (56), Expect = 4.7
Identities = 4/20 (20%), Positives = 13/20 (65%)
Query: 3 KSLDESVGRVIQSLEEEGLL 22
+++ V +V++ L+E ++
Sbjct: 160 CDVNDCVQQVVELLQERDIV 179
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding,
T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP:
b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Length = 573
Score = 25.3 bits (55), Expect = 4.8
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 3 KSLDESVGRVIQSLEEEGLL 22
+S+ V +I LE +G L
Sbjct: 551 QSVRSIVHEIILVLESQGFL 570
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding,
DNA-binding nucleotide-binding, transcription,
transcription regulation; HET: CMP; 1.66A {Escherichia
coli}
Length = 260
Score = 25.0 bits (55), Expect = 5.0
Identities = 7/16 (43%), Positives = 14/16 (87%)
Query: 7 ESVGRVIQSLEEEGLL 22
E+VGR+++ LE++ L+
Sbjct: 232 ETVGRILKMLEDQNLI 247
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery,
DNA binding cyclic A transcription regulator; HET: CMP;
1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A*
3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A*
1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A*
3rdi_A* 3rou_A* 3rpq_A* ...
Length = 210
Score = 24.9 bits (55), Expect = 5.2
Identities = 7/16 (43%), Positives = 14/16 (87%)
Query: 7 ESVGRVIQSLEEEGLL 22
E+VGR+++ LE++ L+
Sbjct: 182 ETVGRILKMLEDQNLI 197
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity,
CRP, CLP, C-DI-GMP receptor, quorum SENS binding,
transcription; 2.30A {Xanthomonas campestris PV}
Length = 230
Score = 25.0 bits (55), Expect = 5.7
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 7 ESVGRVIQSLEEEGLL 22
E GRV++ L+ +GLL
Sbjct: 202 EMAGRVLKKLQADGLL 217
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged
helix-turn-helix motif, DNA binding, transcription
activator; HET: CMP; 2.40A {Thermus thermophilus}
Length = 216
Score = 24.9 bits (55), Expect = 6.1
Identities = 8/16 (50%), Positives = 13/16 (81%)
Query: 7 ESVGRVIQSLEEEGLL 22
E+V RV+ +L EEG++
Sbjct: 178 ETVSRVLHALAEEGVV 193
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken
structural genomics/proteomics in RSGI; 1.92A {Thermus
thermophilus} PDB: 2zdb_A
Length = 195
Score = 24.8 bits (55), Expect = 6.1
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 7 ESVGRVIQSLEEEGLL 22
ESV +V+ L EGL+
Sbjct: 154 ESVSKVLADLRREGLI 169
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide
receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A
2ksb_A
Length = 364
Score = 25.0 bits (55), Expect = 6.5
Identities = 4/11 (36%), Positives = 9/11 (81%)
Query: 20 GLLGNSLVVFI 30
++GN +V++I
Sbjct: 46 SVVGNVVVMWI 56
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2,
protein structure initiative; 2.20A {Thermoplasma
acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Length = 230
Score = 24.7 bits (53), Expect = 6.7
Identities = 8/40 (20%), Positives = 17/40 (42%), Gaps = 5/40 (12%)
Query: 8 SVGRVIQSLEEEGLL-----GNSLVVFISDNGGPTVDSLH 42
S R+I LE+ G + ++ I++ G + +
Sbjct: 43 SASRIIIDLEKNGYITRTVTKRGQILNITEKGLDVLYTEF 82
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold,
transferase-transferase complex; HET: ADX ANP; 1.79A
{Arabidopsis thaliana} PDB: 4fxp_A*
Length = 200
Score = 24.5 bits (54), Expect = 7.0
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 4 SLDESVGRVIQSLEEEGLL 22
S E +V+ L+ +G L
Sbjct: 180 SPIEMAEKVVGYLDNKGYL 198
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary
phase, DNA-binding, transcription regulation; 1.50A
{Thermus thermophilus}
Length = 202
Score = 24.5 bits (54), Expect = 7.7
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 7 ESVGRVIQSLEEEGLL 22
E+V +VI L EG +
Sbjct: 161 ETVTKVIGELAREGYI 176
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration;
HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP:
a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A*
3e5q_A 2h6b_A* 2h6c_A
Length = 250
Score = 24.6 bits (54), Expect = 8.4
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 7 ESVGRVIQSLEEEGLL 22
+V RV+ SL+ E +L
Sbjct: 192 VTVSRVLASLKRENIL 207
>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding,
extracellular, ECT metal binding protein; HET: NAG NDG;
3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1
b.1.6.1 b.1.6.1
Length = 546
Score = 24.6 bits (54), Expect = 8.6
Identities = 4/26 (15%), Positives = 10/26 (38%)
Query: 11 RVIQSLEEEGLLGNSLVVFISDNGGP 36
++ ++ S+ V +SD
Sbjct: 500 MLLSPTQQLKKGDYSIYVLLSDAQNN 525
>3o1c_A Histidine triad nucleotide-binding protein 1; hydrolase, HINT
protein, HIT protein, adenosine 5'- monophosphoramidase;
HET: ADN; 1.08A {Oryctolagus cuniculus} PDB: 3llj_A*
1rzy_A* 3qgz_A* 3o1z_A 3o1x_A* 4eqe_A* 4eqg_A* 4eqh_A*
3tw2_A* 1kpb_A 1kpf_A* 1kpa_A 1kpc_A 1av5_A* 1kpe_A*
4rhn_A* 3rhn_A* 5rhn_A* 6rhn_A
Length = 126
Score = 24.0 bits (53), Expect = 8.8
Identities = 9/23 (39%), Positives = 12/23 (52%), Gaps = 2/23 (8%)
Query: 32 DNGGPTVDSLHFH--GNTASNWP 52
+GG +V +H H G NWP
Sbjct: 102 SDGGQSVYHVHLHVLGGRQMNWP 124
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP),
dimer, inactive(APO, unliganded allostery, DNA binding,
cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB:
3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Length = 227
Score = 24.5 bits (54), Expect = 8.9
Identities = 3/16 (18%), Positives = 7/16 (43%)
Query: 7 ESVGRVIQSLEEEGLL 22
E+V + + G +
Sbjct: 192 ETVNKALADFAHRGWI 207
>3imi_A HIT family protein; structural genomics, infectious diseases for
structural genomics of infectious diseases, unknown FUN
csgid; 2.01A {Bacillus anthracis str}
Length = 147
Score = 24.2 bits (53), Expect = 8.9
Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 9/63 (14%)
Query: 9 VGRVIQSLEEEGLL-GNSLVVFISDNGGPTVDSLHFH--GNTASN------WPLRGTKYS 59
V ++ +++ E G +L+ + G TV H H N W +Y+
Sbjct: 72 VPKIANAIKAEFNPVGFNLLNNNGEKAGQTVFHFHLHLIPRYGENDGFGAVWKSHQNEYT 131
Query: 60 FHE 62
Sbjct: 132 MEN 134
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural
genomics, joint center for structural genomics, JCSG;
HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Length = 231
Score = 24.5 bits (54), Expect = 9.2
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 7 ESVGRVIQSLEEEGLL 22
E+V RV++ LE +L
Sbjct: 190 ETVSRVLKRLEAHNIL 205
>2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA
processing, artemis, V(D)J recombination, double-strand
break repair; 2.50A {Saccharomyces cerevisiae} SCOP:
d.157.1.10
Length = 717
Score = 24.4 bits (52), Expect = 9.8
Identities = 8/40 (20%), Positives = 15/40 (37%)
Query: 11 RVIQSLEEEGLLGNSLVVFISDNGGPTVDSLHFHGNTASN 50
I + E S + F+S+ G + + GN+
Sbjct: 323 IKIIAPNELSKYPGSKICFVSEVGALINEVIIKVGNSEKT 362
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme
sensor, catabolite gene activator protein; HET: HEM;
2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Length = 222
Score = 24.1 bits (53), Expect = 10.0
Identities = 4/16 (25%), Positives = 9/16 (56%)
Query: 7 ESVGRVIQSLEEEGLL 22
++ + SL +EG +
Sbjct: 178 QTTSTALNSLIKEGYI 193
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.136 0.413
Gapped
Lambda K H
0.267 0.0774 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,642,347
Number of extensions: 85739
Number of successful extensions: 315
Number of sequences better than 10.0: 1
Number of HSP's gapped: 304
Number of HSP's successfully gapped: 54
Length of query: 107
Length of database: 6,701,793
Length adjustment: 72
Effective length of query: 35
Effective length of database: 4,691,481
Effective search space: 164201835
Effective search space used: 164201835
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.3 bits)