RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7399
(107 letters)
>d1p49a_ c.76.1.2 (A:) Steryl-sulfatase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 553
Score = 43.7 bits (101), Expect = 7e-07
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Query: 6 DESVGRVIQSLEEEGLLGNSLVVFISDNGGPTVD-SLHFHGNTASNWPLRGTKYSFHEGG 64
D SVG+++ L+E L ++L+ F SD G + S + SN +G K + EGG
Sbjct: 294 DWSVGQILNLLDELRLANDTLIYFTSDQGAHVEEVSSKGEIHGGSNGIYKGGKANNWEGG 353
Query: 65 VRNVAALWSPL-LRKGQVLENLMHITDWLPTLYF 97
+R L P ++ GQ ++ D PT+
Sbjct: 354 IRVPGILRWPRVIQAGQKIDEPTSNMDIFPTVAK 387
>d1hdha_ c.76.1.2 (A:) Arylsulfatase B (4-sulfatase) {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 525
Score = 30.9 bits (68), Expect = 0.019
Identities = 23/105 (21%), Positives = 38/105 (36%), Gaps = 33/105 (31%)
Query: 1 MLKSLDESVGRVIQSLEEEGLLGNSLVVFISDNGGP------------------------ 36
M++ +D ++GRV+ L +G L N+ V+F+SDNG
Sbjct: 284 MVERMDWNIGRVVDYLRRQGELDNTFVLFMSDNGAEGALLEAFPKFGPDLLGFLDRHYDN 343
Query: 37 ---------TVDSLHFHGNTASNWPLRGTKYSFHEGGVRNVAALW 72
+ A+ P R K +GG+R A +
Sbjct: 344 SLENIGRANSYVWYGPRWAQAATAPSRLYKAFTTQGGIRVPALVR 388
>d1fsua_ c.76.1.2 (A:) Arylsulfatase B (4-sulfatase) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 492
Score = 28.6 bits (62), Expect = 0.16
Identities = 42/102 (41%), Positives = 57/102 (55%), Gaps = 8/102 (7%)
Query: 6 DESVGRVIQSLEEEGLLGNSLVVFISDNGGPTVDSLHFHGNTASNWPLRGTKYSFHEGGV 65
DE+VG V +L+ GL N++ +F +DNG +NWPLRG K+S EGGV
Sbjct: 233 DEAVGNVTAALKSSGLWNNTVFIFSTDNG-------GQTLAGGNNWPLRGRKWSLWEGGV 285
Query: 66 RNVAALWSPLLRKGQVLENL-MHITDWLPTLYFIAGKEKNID 106
R V + SPLL++ V +HI+DWLPTL +A N
Sbjct: 286 RGVGFVASPLLKQKGVKNRELIHISDWLPTLVKLARGHTNGT 327
>d1i5za1 a.4.5.4 (A:138-206) Catabolite gene activator protein
(CAP), C-terminal domain {Escherichia coli [TaxId:
562]}
Length = 69
Score = 25.9 bits (57), Expect = 0.44
Identities = 10/26 (38%), Positives = 20/26 (76%), Gaps = 3/26 (11%)
Query: 7 ESVGRVIQSLEEEGLL---GNSLVVF 29
E+VGR+++ LE++ L+ G ++VV+
Sbjct: 44 ETVGRILKMLEDQNLISAHGKTIVVY 69
>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 122
Score = 26.2 bits (58), Expect = 0.62
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 3 KSLDESVGRVIQSLEEEGLL 22
+ + V +V+ LE+ G
Sbjct: 101 EPISHIVQKVVLFLEDNGFF 120
>d1i5pa1 b.18.1.3 (A:473-633) delta-Endotoxin, C-terminal domain
{Bacillus thuringiensis subsp. kurstaki, CRY2AA [TaxId:
29339]}
Length = 161
Score = 26.1 bits (57), Expect = 0.84
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 24 NSLVVFISDNGGPTVDSLHFH-GNTASNWPLRGTKYSF 60
N FIS+ G DSL F NT + + LRG S+
Sbjct: 34 NQTRTFISEKFGNQGDSLRFEQSNTTARYTLRGNGNSY 71
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain
{Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 183
Score = 25.4 bits (54), Expect = 1.3
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 3 KSLDESVGRVIQSLEEEGLL 22
+S+ V +I LE +G L
Sbjct: 161 QSVRSIVHEIILVLESQGFL 180
>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS
kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 208
Score = 25.2 bits (54), Expect = 1.7
Identities = 5/20 (25%), Positives = 12/20 (60%)
Query: 3 KSLDESVGRVIQSLEEEGLL 22
+ ++V ++I L+ +G L
Sbjct: 186 LPVQDAVKQIIDYLDTKGYL 205
>d1o98a2 c.76.1.3 (A:2-76,A:311-510)
2,3-Bisphosphoglycerate-independent phosphoglycerate
mutase, catalytic domain {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 275
Score = 25.4 bits (54), Expect = 1.7
Identities = 8/68 (11%), Positives = 16/68 (23%), Gaps = 4/68 (5%)
Query: 36 PTVDSLHFHGNTASNWPLRGTKYSFHEGGVRNVAALWSPLLRKGQVLENLMHITDWLPTL 95
+ + A K + G L + + D PT+
Sbjct: 201 GGIAIITADHGNADEVLTPDGKPQTAHTTNPVPVIVTKK----GIKLRDGGILGDLAPTM 256
Query: 96 YFIAGKEK 103
+ G +
Sbjct: 257 LDLLGLPQ 264
>d2cz4a1 d.58.5.1 (A:1-100) Hypothetical protein TTHA0516 {Thermus
thermophilus [TaxId: 274]}
Length = 100
Score = 24.3 bits (53), Expect = 2.2
Identities = 6/27 (22%), Positives = 16/27 (59%)
Query: 6 DESVGRVIQSLEEEGLLGNSLVVFISD 32
+E R++Q L+EE +++ ++ +
Sbjct: 64 EEVALRILQRLQEEYFPHYAVIAYVEN 90
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS
kinase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 195
Score = 24.6 bits (52), Expect = 2.6
Identities = 4/20 (20%), Positives = 13/20 (65%)
Query: 3 KSLDESVGRVIQSLEEEGLL 22
+++ V +V++ L+E ++
Sbjct: 174 CDVNDCVQQVVELLQERDIV 193
>d2cona1 g.41.15.1 (A:8-73) RNA-binding protein NOB1 (Nin one
binding) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 66
Score = 23.5 bits (51), Expect = 3.2
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Query: 28 VFISDNGGPTVDSLHFHGNTASNWPLRGTKYS 59
V I+D+G +HF N RG +YS
Sbjct: 39 VTINDDGTLH---MHFSRN-PKVLNPRGLRYS 66
>d1xqua_ d.13.1.1 (A:) Putative hydrolase {Clostridium thermocellum
[TaxId: 1515]}
Length = 113
Score = 24.0 bits (51), Expect = 3.2
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 23 GNSLVVFISDNGGPTVDSLHFH 44
G L+ G TV LH+H
Sbjct: 81 GYRLITNCGVAAGQTVFHLHYH 102
>d1ft9a1 a.4.5.4 (A:134-213) CO-sensing protein CooA, C-terminal
domain {Rhodospirillum rubrum [TaxId: 1085]}
Length = 80
Score = 23.2 bits (50), Expect = 4.3
Identities = 4/16 (25%), Positives = 9/16 (56%)
Query: 7 ESVGRVIQSLEEEGLL 22
++ + SL +EG +
Sbjct: 45 QTTSTALNSLIKEGYI 60
>d3e5ua1 a.4.5.4 (A:148-227) Chlorophenol reduction protein CprK
{Desulfitobacterium hafniense [TaxId: 49338]}
Length = 80
Score = 22.4 bits (48), Expect = 8.5
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 1 MLKSLDESVGRVIQSLEEEGLL 22
+ +V RV+ SL+ E +L
Sbjct: 39 ITGVHHVTVSRVLASLKRENIL 60
>d2gaua1 a.4.5.4 (A:152-232) Transcriptional regulator PG0396,
C-terminal domain {Porphyromonas gingivalis [TaxId:
837]}
Length = 81
Score = 22.4 bits (48), Expect = 8.9
Identities = 3/16 (18%), Positives = 7/16 (43%)
Query: 7 ESVGRVIQSLEEEGLL 22
+ R + + E +L
Sbjct: 44 SNAIRTLSTFVSERML 59
>d1zyba1 a.4.5.4 (A:148-220) Probable transcription regulator
BT4300, C-terminal domain {Bacteroides thetaiotaomicron
[TaxId: 818]}
Length = 73
Score = 22.4 bits (48), Expect = 8.9
Identities = 4/22 (18%), Positives = 11/22 (50%)
Query: 1 MLKSLDESVGRVIQSLEEEGLL 22
L ++ + + L++ GL+
Sbjct: 36 CLDDTRLNISKTLNELQDNGLI 57
>d1s4na_ c.68.1.16 (A:) Glycolipid 2-alpha-mannosyltransferase
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 339
Score = 23.2 bits (50), Expect = 9.7
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 24 NSLVVFISDNGGPTVDSLHFHGN 46
N+L+ F+S++ G T + HF N
Sbjct: 202 NNLMSFLSNDNGKTYNLCHFWSN 224
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.136 0.413
Gapped
Lambda K H
0.267 0.0646 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 395,994
Number of extensions: 15656
Number of successful extensions: 62
Number of sequences better than 10.0: 1
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 20
Length of query: 107
Length of database: 2,407,596
Length adjustment: 67
Effective length of query: 40
Effective length of database: 1,487,686
Effective search space: 59507440
Effective search space used: 59507440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.1 bits)