BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy74
(134 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 32.3 bits (72), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 13 YTVHNNVMYYVKERFLHRLDLTNSKDSVVMQLRGGGRIPAH-SISYNATEHSILVTTRNA 71
Y +H M + F +L +SK S+++Q GRIP H S+S+ A E +T+
Sbjct: 4 YPLHQACM---ENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHE----ITSFLL 56
Query: 72 NNFENSTYDLY 82
+ EN D Y
Sbjct: 57 SKMENVNLDDY 67
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 32.3 bits (72), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 13 YTVHNNVMYYVKERFLHRLDLTNSKDSVVMQLRGGGRIPAH-SISYNATEHSILVTTRNA 71
Y +H M + F +L +SK S+++Q GRIP H S+S+ A E +T+
Sbjct: 4 YPLHQACM---ENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHE----ITSFLL 56
Query: 72 NNFENSTYDLY 82
+ EN D Y
Sbjct: 57 SKMENVNLDDY 67
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 32.0 bits (71), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 13 YTVHNNVMYYVKERFLHRLDLTNSKDSVVMQLRGGGRIPAH-SISYNATEHSILVTTRNA 71
Y +H M + F +L +SK S+++Q GRIP H S+S+ A E +T+
Sbjct: 4 YPLHQACM---ENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHE----ITSFLL 56
Query: 72 NNFENSTYDLY 82
+ EN D Y
Sbjct: 57 SKMENVNLDDY 67
>pdb|1R8W|A Chain A, Native Structure Of The B12-Independent Glycerol
Dehydratase From Clostridium Butyricum
pdb|1R8W|B Chain B, Native Structure Of The B12-Independent Glycerol
Dehydratase From Clostridium Butyricum
pdb|1R9D|A Chain A, Glycerol Bound Form Of The B12-Independent Glycerol
Dehydratase From Clostridium Butyricum
pdb|1R9D|B Chain B, Glycerol Bound Form Of The B12-Independent Glycerol
Dehydratase From Clostridium Butyricum
pdb|1R9E|A Chain A, Structure Of The B12-Independent Glycerol Dehydratase With
1,2-Propanediol Bound
pdb|1R9E|B Chain B, Structure Of The B12-Independent Glycerol Dehydratase With
1,2-Propanediol Bound
Length = 787
Score = 26.6 bits (57), Expect = 4.4, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 62 HSILVTTRNANNFENSTYDLYMIPKEESERKEVADGKRSTGISAVWVARN 111
H+I+ N ++ + +D YM P E++ K + D I +W+ N
Sbjct: 271 HAIINIESNGHSISPARFDQYMYPYYEND-KNITDKFAQELIDCIWIKLN 319
>pdb|2QOR|A Chain A, Crystal Structure Of Plasmodium Vivax Guanylate Kinase
Length = 204
Score = 25.8 bits (55), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 63 SILVTTRNANNFENSTYDLYMIPKEESERK 92
SI TTRN E + D Y + K++ ERK
Sbjct: 43 SISCTTRNKREKETNGVDYYFVDKDDFERK 72
>pdb|3K7O|A Chain A, Structure Of Type B Ribose 5-phosphate Isomerase From
Trypanosoma Cruzi
pdb|3K7O|B Chain B, Structure Of Type B Ribose 5-phosphate Isomerase From
Trypanosoma Cruzi
pdb|3K7S|A Chain A, Complex Of Trypanosoma Cruzi Ribose 5-Phosphate
Isomerase Type B With Ribose 5-Phosphate
pdb|3K7S|B Chain B, Complex Of Trypanosoma Cruzi Ribose 5-Phosphate
Isomerase Type B With Ribose 5-Phosphate
pdb|3K7S|C Chain C, Complex Of Trypanosoma Cruzi Ribose 5-Phosphate
Isomerase Type B With Ribose 5-Phosphate
pdb|3K7S|D Chain D, Complex Of Trypanosoma Cruzi Ribose 5-Phosphate
Isomerase Type B With Ribose 5-Phosphate
pdb|3K8C|A Chain A, Complex Of Trypanosoma Cruzi Ribose 5-Phosphate
Isomerase Type B With
4-Deoxy-4-Phospho-D-Erythronohydroxamic Acid
pdb|3K8C|B Chain B, Complex Of Trypanosoma Cruzi Ribose 5-Phosphate
Isomerase Type B With
4-Deoxy-4-Phospho-D-Erythronohydroxamic Acid
Length = 179
Score = 25.8 bits (55), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 8/17 (47%), Positives = 13/17 (76%)
Query: 9 ERPAYTVHNNVMYYVKE 25
+ PA+ +H N++ YVKE
Sbjct: 30 DHPAFAIHENLILYVKE 46
>pdb|3K7P|A Chain A, Structure Of Mutant Of Ribose 5-phosphate Isomerase Type
B From Trypanosoma Cruzi.
pdb|3K7P|B Chain B, Structure Of Mutant Of Ribose 5-phosphate Isomerase Type
B From Trypanosoma Cruzi
Length = 179
Score = 25.8 bits (55), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 8/17 (47%), Positives = 13/17 (76%)
Query: 9 ERPAYTVHNNVMYYVKE 25
+ PA+ +H N++ YVKE
Sbjct: 30 DHPAFAIHENLILYVKE 46
>pdb|3M1P|A Chain A, Structure Of Ribose 5-Phosphate Isomerase Type B From
Trypanosoma Cruzi, Soaked With Allose-6-Phosphate
pdb|3M1P|B Chain B, Structure Of Ribose 5-Phosphate Isomerase Type B From
Trypanosoma Cruzi, Soaked With Allose-6-Phosphate
Length = 153
Score = 25.8 bits (55), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 8/17 (47%), Positives = 13/17 (76%)
Query: 9 ERPAYTVHNNVMYYVKE 25
+ PA+ +H N++ YVKE
Sbjct: 10 DHPAFAIHENLILYVKE 26
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.133 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,829,838
Number of Sequences: 62578
Number of extensions: 137775
Number of successful extensions: 438
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 431
Number of HSP's gapped (non-prelim): 13
length of query: 134
length of database: 14,973,337
effective HSP length: 88
effective length of query: 46
effective length of database: 9,466,473
effective search space: 435457758
effective search space used: 435457758
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)