BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy74
(134 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q27954|COPA_BOVIN Coatomer subunit alpha OS=Bos taurus GN=COPA PE=1 SV=1
Length = 1224
Score = 177 bits (450), Expect = 1e-44, Method: Composition-based stats.
Identities = 81/131 (61%), Positives = 106/131 (80%), Gaps = 2/131 (1%)
Query: 1 MVVFKFERERPAYTVHNNVMYYVKERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNAT 60
M+VFK ERERPAY VH N+++YVK+RFL +LD +SKD VMQLR G + P S+SYN
Sbjct: 314 MIVFKLERERPAYAVHGNMLHYVKDRFLRQLDFNSSKDVAVMQLRSGSKFPVFSMSYNPA 373
Query: 61 EHSILVTTRNANNFENSTYDLYMIPKE-ESERKEVADGKRSTGISAVWVARNRFAVLDRN 119
E+++L+ TR A+N ENSTYDLY IPK+ +++ + +GKRS+G++AVWVARNRFAVLDR
Sbjct: 374 ENAVLLCTR-ASNLENSTYDLYTIPKDADTQNPDAPEGKRSSGLTAVWVARNRFAVLDRM 432
Query: 120 HTILIKNLKNE 130
H++LIKNLKNE
Sbjct: 433 HSLLIKNLKNE 443
>sp|Q8CIE6|COPA_MOUSE Coatomer subunit alpha OS=Mus musculus GN=Copa PE=1 SV=2
Length = 1224
Score = 177 bits (450), Expect = 1e-44, Method: Composition-based stats.
Identities = 81/131 (61%), Positives = 106/131 (80%), Gaps = 2/131 (1%)
Query: 1 MVVFKFERERPAYTVHNNVMYYVKERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNAT 60
M+VFK ERERPAY VH N+++YVK+RFL +LD +SKD VMQLR G + P ++SYN
Sbjct: 314 MIVFKLERERPAYAVHGNMLHYVKDRFLRQLDFNSSKDVAVMQLRSGSKFPVFNMSYNPA 373
Query: 61 EHSILVTTRNANNFENSTYDLYMIPKE-ESERKEVADGKRSTGISAVWVARNRFAVLDRN 119
E+++L+ TR A+N ENSTYDLY IPK+ +S+ + +GKRS+G++AVWVARNRFAVLDR
Sbjct: 374 ENAVLLCTR-ASNLENSTYDLYTIPKDADSQNPDAPEGKRSSGLTAVWVARNRFAVLDRM 432
Query: 120 HTILIKNLKNE 130
H++LIKNLKNE
Sbjct: 433 HSLLIKNLKNE 443
>sp|P53621|COPA_HUMAN Coatomer subunit alpha OS=Homo sapiens GN=COPA PE=1 SV=2
Length = 1224
Score = 177 bits (449), Expect = 2e-44, Method: Composition-based stats.
Identities = 81/131 (61%), Positives = 106/131 (80%), Gaps = 2/131 (1%)
Query: 1 MVVFKFERERPAYTVHNNVMYYVKERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNAT 60
M+VFK ERERPAY VH N+++YVK+RFL +LD +SKD VMQLR G + P ++SYN
Sbjct: 314 MIVFKLERERPAYAVHGNMLHYVKDRFLRQLDFNSSKDVAVMQLRSGSKFPVFNMSYNPA 373
Query: 61 EHSILVTTRNANNFENSTYDLYMIPKE-ESERKEVADGKRSTGISAVWVARNRFAVLDRN 119
E+++L+ TR A+N ENSTYDLY IPK+ +S+ + +GKRS+G++AVWVARNRFAVLDR
Sbjct: 374 ENAVLLCTR-ASNLENSTYDLYTIPKDADSQNPDAPEGKRSSGLTAVWVARNRFAVLDRM 432
Query: 120 HTILIKNLKNE 130
H++LIKNLKNE
Sbjct: 433 HSLLIKNLKNE 443
>sp|Q9SJT9|COPA2_ARATH Coatomer subunit alpha-2 OS=Arabidopsis thaliana GN=At2g21390 PE=2
SV=1
Length = 1218
Score = 111 bits (277), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/137 (42%), Positives = 93/137 (67%), Gaps = 12/137 (8%)
Query: 1 MVVFKFERERPAYTVHNNVMYYVKERFLHRLDLTNSKDSVVMQLRGGGRIPA-----HSI 55
M+VFK ERERPA+ + + ++Y K+RFL + + KDS V+ +R G P+ ++
Sbjct: 313 MIVFKLERERPAFALSGDSLFYAKDRFLRYYEYSTQKDSQVIPIRRPG-TPSLNQSPRTL 371
Query: 56 SYNATEHSILVTTRNANNFENSTYDLYMIPKEESERKEVA-DGKRSTGISAVWVARNRFA 114
SY+ TE+++L+ + + + +Y+LY+IPK+ R +V D KR TG SAV++ARNRFA
Sbjct: 372 SYSPTENAVLICS----DLDGGSYELYIIPKDSVGRSDVVQDAKRGTGGSAVFIARNRFA 427
Query: 115 VLDRNHT-ILIKNLKNE 130
VL+++ + +L+KNLKNE
Sbjct: 428 VLEKSTSQVLVKNLKNE 444
>sp|Q94A40|COPA1_ARATH Coatomer subunit alpha-1 OS=Arabidopsis thaliana GN=At1g62020 PE=1
SV=2
Length = 1216
Score = 109 bits (273), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 57/137 (41%), Positives = 93/137 (67%), Gaps = 12/137 (8%)
Query: 1 MVVFKFERERPAYTVHNNVMYYVKERFLHRLDLTNSKDSVVMQLRGGGRIPA-----HSI 55
M+VFK ERERPA+ + + ++Y K+RFL + + +DS V+ +R G P+ ++
Sbjct: 313 MIVFKLERERPAFALSGDSLFYAKDRFLRYYEYSTQRDSQVIPIRRPG-TPSLNQSPRTL 371
Query: 56 SYNATEHSILVTTRNANNFENSTYDLYMIPKEESERKEVA-DGKRSTGISAVWVARNRFA 114
SY+ TE+++L+ + + + +Y+LY+IPK+ R +V D KR TG SAV++ARNRFA
Sbjct: 372 SYSPTENAVLICS----DLDGGSYELYIIPKDSVGRSDVVQDAKRGTGGSAVFIARNRFA 427
Query: 115 VLDRNHT-ILIKNLKNE 130
VL+++ + +L+KNLKNE
Sbjct: 428 VLEKSTSQVLVKNLKNE 444
>sp|Q9AUR8|COPA1_ORYSJ Coatomer subunit alpha-1 OS=Oryza sativa subsp. japonica
GN=Os03g0711400 PE=2 SV=1
Length = 1218
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 54/137 (39%), Positives = 92/137 (67%), Gaps = 10/137 (7%)
Query: 1 MVVFKFERERPAYTVHNNVMYYVKERFLHRLDLTNSKDSVVMQLRGGGRI----PAHSIS 56
M+VFK ERERPA++V + ++YVK+RFL + T K+ + +R G + ++S
Sbjct: 313 MIVFKLERERPAFSVSGDTVFYVKDRFLRFFEFTTQKEVQLAPIRRPGSVSLNQSPKTLS 372
Query: 57 YNATEHSILVTTRNANNFENSTYDLYMIPKEESERKE-VADGKRSTGISAVWVARNRFAV 115
Y+ TE+++L+ + + + +Y+LY++PK+ + R + + D K+ G SAV+VARNRFAV
Sbjct: 373 YSPTENAVLICS----DVDGGSYELYIVPKDSAGRADYLQDAKKGAGGSAVFVARNRFAV 428
Query: 116 LDR-NHTILIKNLKNEF 131
L++ ++ +L+KNLKNE
Sbjct: 429 LEKSSNQVLVKNLKNEI 445
>sp|Q9AUR7|COPA2_ORYSJ Coatomer subunit alpha-2 OS=Oryza sativa subsp. japonica
GN=Os03g0711500 PE=2 SV=1
Length = 1218
Score = 107 bits (266), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 53/137 (38%), Positives = 92/137 (67%), Gaps = 10/137 (7%)
Query: 1 MVVFKFERERPAYTVHNNVMYYVKERFLHRLDLTNSKDSVVMQLRGGGRI----PAHSIS 56
M+VFK ERERPA++V + ++YVK+RFL + T K+ + +R G + ++S
Sbjct: 313 MIVFKLERERPAFSVSGDTVFYVKDRFLRFFEFTTQKEVQLAPIRRPGSVSLNQSPKTLS 372
Query: 57 YNATEHSILVTTRNANNFENSTYDLYMIPKEESERKE-VADGKRSTGISAVWVARNRFAV 115
Y+ TE+++L+ + + + +Y+LY++PK+ + R + + D K+ G SAV+VARNRFAV
Sbjct: 373 YSPTENAVLICS----DVDGGSYELYIVPKDSAGRADYLQDAKKGAGGSAVFVARNRFAV 428
Query: 116 LDR-NHTILIKNLKNEF 131
L++ ++ +L++NLKNE
Sbjct: 429 LEKSSNQVLVRNLKNEI 445
>sp|Q0J3D9|COPA3_ORYSJ Coatomer subunit alpha-3 OS=Oryza sativa subsp. japonica
GN=Os09g0127800 PE=2 SV=1
Length = 1218
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 92/137 (67%), Gaps = 10/137 (7%)
Query: 1 MVVFKFERERPAYTVHNNVMYYVKERFLHRLDLTNSKDSVVMQLRGGGRI----PAHSIS 56
M+VFK ERERPA++V + ++YVK+RFL + + K+ + +R G + ++S
Sbjct: 313 MIVFKLERERPAFSVSGDTVFYVKDRFLRFFEYSTQKEVQLAPIRRPGSVSLNQSPRTLS 372
Query: 57 YNATEHSILVTTRNANNFENSTYDLYMIPKEESERKE-VADGKRSTGISAVWVARNRFAV 115
Y+ TE+++L+ + + + +Y+LY++PK+ + R + + + K+ G SAV+VARNRFAV
Sbjct: 373 YSPTENAVLICS----DVDGGSYELYIVPKDSAGRTDYLQEAKKGAGGSAVFVARNRFAV 428
Query: 116 LDR-NHTILIKNLKNEF 131
L++ ++ +L+KNLKNE
Sbjct: 429 LEKSSNQVLVKNLKNEI 445
>sp|Q55FR9|COPA_DICDI Coatomer subunit alpha OS=Dictyostelium discoideum GN=copa PE=3
SV=1
Length = 1221
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 83/135 (61%), Gaps = 15/135 (11%)
Query: 1 MVVFKFERERPAYTVHNNV-MYYVKERFLHRLDLTNSKDSVVMQLRGGGRIPA----HSI 55
M+VFK ERERP + + + ++++K++ + D + + + ++P+ ++
Sbjct: 310 MIVFKLERERPLFVQNGDSGVFFLKKKNFNSFDFQAGRTVSLFHI---SKLPSNNGTQTM 366
Query: 56 SYNATEHSILVTTRNANNFENSTYDLYMIPKEESERKEVADGKRSTGISAVWVARNRFAV 115
SYN TE +ILV++ + E +Y LY IP ++S + K+ TG++A++V R+RFAV
Sbjct: 367 SYNQTERAILVSS----DAEGGSYHLYKIPPKDSN---TVNTKKGTGVAAIFVGRDRFAV 419
Query: 116 LDRNHTILIKNLKNE 130
LD+ + ++I++L+NE
Sbjct: 420 LDKGNNVVIRDLENE 434
>sp|Q96WV5|COPA_SCHPO Putative coatomer subunit alpha OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBPJ4664.04 PE=1 SV=1
Length = 1207
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 76/134 (56%), Gaps = 9/134 (6%)
Query: 1 MVVFKFERERPAYTVHNNVMYYV-KERFLHRLDLTNSKDSVVMQLR--GGGRIPAHSISY 57
++VFK ERERPA+ ++ N + YV KE+ + DL ++ + V ++ G +P S+SY
Sbjct: 321 VMVFKLERERPAHALNINTLLYVNKEKSIVSYDLLRAQSTTVASVKHLGSAWLPPRSLSY 380
Query: 58 NATEHSILVTTRNANNFENSTYDLYMIPKEESERKEVADGKRSTGISAVWVARNRFAVLD 117
N E L+T+ + +N Y+L + S + D + G A++VARNRFAV
Sbjct: 381 NPAEKVALLTS----SADNGVYELVNV-SSRSNSLPLKDNIKGPGDDAIFVARNRFAVFS 435
Query: 118 R-NHTILIKNLKNE 130
R + TI IK+L N+
Sbjct: 436 RSDQTIEIKDLSNK 449
>sp|P53622|COPA_YEAST Coatomer subunit alpha OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=COP1 PE=1 SV=2
Length = 1201
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 73/135 (54%), Gaps = 11/135 (8%)
Query: 1 MVVFKFERERPAYTVHNNVMYYV-KERFLHRLDLTNSKDSV-VMQLRGGGRI--PAHSIS 56
++VFK +RERP +H N +++V E+ + + S+ L+G G+ SIS
Sbjct: 318 IMVFKLDRERPCSFIHQNQLFFVNAEKQIQSFNFQKRVASLPYASLKGIGQPWDAFRSIS 377
Query: 57 YNATEHSILVTTRNANNFENSTYDLYMIPKEESERKEVADGKRSTGISAVWVARNRFAVL 116
YN ++HS+LV N N + L ++PK+ E + TG A +V RNRF V
Sbjct: 378 YNPSQHSVLV------NEANGKFALVILPKQPVGAVEPTSVTQDTGNFATFVGRNRFVVY 431
Query: 117 DRN-HTILIKNLKNE 130
++N ++ +++L+N+
Sbjct: 432 NKNTESVEVRSLENK 446
>sp|P50086|PSD10_YEAST Probable 26S proteasome regulatory subunit p28 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=NAS6 PE=1
SV=1
Length = 228
Score = 32.3 bits (72), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 13 YTVHNNVMYYVKERFLHRLDLTNSKDSVVMQLRGGGRIPAH-SISYNATEHSILVTTRNA 71
Y +H M + F +L +SK S+++Q GRIP H S+S+ A E +T+
Sbjct: 4 YPLHQACM---ENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHE----ITSFLL 56
Query: 72 NNFENSTYDLY 82
+ EN D Y
Sbjct: 57 SKMENVNLDDY 67
>sp|Q6TC39|SRY_MIRAN Sex-determining region Y protein OS=Mirounga angustirostris GN=SRY
PE=3 SV=1
Length = 218
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 29/63 (46%)
Query: 58 NATEHSILVTTRNANNFENSTYDLYMIPKEESERKEVADGKRSTGISAVWVARNRFAVLD 117
N+++H V RN F ++++L+ + R E R +G + V N F V
Sbjct: 6 NSSDHRAAVQQRNIPAFGRTSFELWTDSPTSNHRCETGGNGRDSGQNRVRRPMNAFMVWS 65
Query: 118 RNH 120
R+H
Sbjct: 66 RDH 68
>sp|Q6TC38|SRY_MIRLE Sex-determining region Y protein OS=Mirounga leonina GN=SRY PE=3
SV=1
Length = 218
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 29/63 (46%)
Query: 58 NATEHSILVTTRNANNFENSTYDLYMIPKEESERKEVADGKRSTGISAVWVARNRFAVLD 117
N+++H V RN F ++++L+ + R E R +G + V N F V
Sbjct: 6 NSSDHRAAVQQRNIPAFGRTSFELWTDSPTSNHRCETGGNGRDSGQNRVRRPMNAFMVWS 65
Query: 118 RNH 120
R+H
Sbjct: 66 RDH 68
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.133 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,212,649
Number of Sequences: 539616
Number of extensions: 1772639
Number of successful extensions: 4504
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 4463
Number of HSP's gapped (non-prelim): 23
length of query: 134
length of database: 191,569,459
effective HSP length: 100
effective length of query: 34
effective length of database: 137,607,859
effective search space: 4678667206
effective search space used: 4678667206
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)