Query psy74
Match_columns 134
No_of_seqs 106 out of 163
Neff 5.5
Searched_HMMs 46136
Date Fri Aug 16 17:14:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy74.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/74hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0292|consensus 100.0 5.8E-44 1.3E-48 323.8 13.3 129 1-133 315-446 (1202)
2 PF04053 Coatomer_WDAD: Coatom 99.6 1E-15 2.3E-20 132.7 6.8 95 25-133 1-103 (443)
3 KOG0276|consensus 96.6 0.023 4.9E-07 52.4 10.0 113 1-128 292-418 (794)
4 KOG0772|consensus 91.0 1.4 3.1E-05 40.2 8.3 107 24-130 187-301 (641)
5 KOG0643|consensus 90.0 6.5 0.00014 33.4 10.9 120 4-129 38-178 (327)
6 PRK05137 tolB translocation pr 85.4 22 0.00047 30.3 11.8 67 11-86 207-277 (435)
7 PF02191 OLF: Olfactomedin-lik 83.6 12 0.00026 30.5 9.0 106 9-118 70-188 (250)
8 PF02191 OLF: Olfactomedin-lik 83.3 5 0.00011 32.7 6.6 42 25-67 194-236 (250)
9 KOG1446|consensus 80.3 36 0.00078 29.1 11.9 112 9-128 142-262 (311)
10 PRK01742 tolB translocation pr 80.0 35 0.00076 29.0 11.0 66 11-85 209-278 (429)
11 smart00284 OLF Olfactomedin-li 79.5 7.1 0.00015 32.2 6.3 50 26-83 200-250 (255)
12 PRK04792 tolB translocation pr 79.1 42 0.0009 29.0 12.6 69 10-87 222-294 (448)
13 KOG0294|consensus 79.0 22 0.00047 30.8 9.2 61 24-91 61-129 (362)
14 KOG0268|consensus 78.0 2.9 6.4E-05 36.7 3.8 48 27-83 168-216 (433)
15 KOG2055|consensus 76.1 26 0.00057 31.6 9.2 106 13-128 265-374 (514)
16 KOG0266|consensus 75.6 53 0.0012 28.4 12.4 96 24-131 223-321 (456)
17 PRK02889 tolB translocation pr 75.5 50 0.0011 28.1 12.7 68 11-87 201-272 (427)
18 smart00284 OLF Olfactomedin-li 74.7 32 0.00069 28.4 8.9 73 10-84 76-158 (255)
19 PRK00178 tolB translocation pr 74.6 50 0.0011 27.7 11.7 69 10-87 203-275 (430)
20 cd00200 WD40 WD40 domain, foun 74.6 29 0.00062 24.9 12.6 101 17-128 21-123 (289)
21 KOG1517|consensus 72.0 61 0.0013 32.5 11.1 113 15-132 1219-1337(1387)
22 TIGR02800 propeller_TolB tol-p 71.7 56 0.0012 26.9 11.9 66 11-85 195-264 (417)
23 PF04841 Vps16_N: Vps16, N-ter 71.5 66 0.0014 27.7 11.3 106 11-130 34-158 (410)
24 COG3204 Uncharacterized protei 70.3 37 0.00081 29.0 8.4 81 9-89 184-277 (316)
25 COG3204 Uncharacterized protei 69.4 23 0.00049 30.3 6.9 68 52-128 88-158 (316)
26 cd00200 WD40 WD40 domain, foun 68.6 40 0.00088 24.1 12.2 99 18-128 147-249 (289)
27 KOG1407|consensus 67.0 36 0.00078 28.9 7.6 61 19-85 78-177 (313)
28 TIGR02800 propeller_TolB tol-p 65.0 78 0.0017 26.1 11.2 68 11-87 239-310 (417)
29 KOG0302|consensus 64.0 15 0.00032 32.6 4.9 58 24-87 322-380 (440)
30 PLN00181 protein SPA1-RELATED; 60.0 1.4E+02 0.0031 27.5 12.9 94 24-129 553-649 (793)
31 TIGR02658 TTQ_MADH_Hv methylam 59.7 1.1E+02 0.0025 26.2 13.3 116 9-128 197-330 (352)
32 KOG0263|consensus 57.5 1.6E+02 0.0035 28.0 10.7 104 13-128 541-649 (707)
33 KOG0270|consensus 56.3 58 0.0013 29.2 7.3 76 7-89 331-408 (463)
34 PRK00178 tolB translocation pr 54.3 1.3E+02 0.0028 25.2 11.6 66 11-85 248-317 (430)
35 PRK04922 tolB translocation pr 54.3 1.4E+02 0.003 25.4 11.9 66 11-85 209-278 (433)
36 KOG0279|consensus 52.3 1.5E+02 0.0033 25.4 11.0 103 17-129 75-181 (315)
37 KOG1036|consensus 51.8 1.6E+02 0.0034 25.4 10.9 68 50-129 95-164 (323)
38 PF14157 YmzC: YmzC-like prote 51.7 18 0.0004 24.0 2.7 28 101-128 20-47 (63)
39 KOG3545|consensus 51.5 25 0.00054 29.1 4.1 43 24-67 191-235 (249)
40 PRK05137 tolB translocation pr 49.2 1.6E+02 0.0036 24.9 11.0 69 10-87 250-322 (435)
41 PF03178 CPSF_A: CPSF A subuni 48.4 1.4E+02 0.0031 24.0 13.8 114 5-128 84-202 (321)
42 PRK01029 tolB translocation pr 48.0 1.1E+02 0.0023 26.4 7.7 69 10-87 331-403 (428)
43 PTZ00421 coronin; Provisional 47.9 2E+02 0.0044 25.5 13.3 102 19-128 90-198 (493)
44 KOG0302|consensus 47.9 2E+02 0.0044 25.6 10.8 102 18-128 271-378 (440)
45 PRK03629 tolB translocation pr 47.8 1.8E+02 0.0039 24.9 11.8 66 11-85 204-273 (429)
46 PF03478 DUF295: Protein of un 46.8 26 0.00057 21.5 2.8 19 15-33 30-54 (54)
47 PTZ00421 coronin; Provisional 46.3 2.1E+02 0.0047 25.4 14.9 108 17-129 180-291 (493)
48 KOG2110|consensus 45.2 1.9E+02 0.0042 25.5 8.7 66 16-89 184-252 (391)
49 KOG4499|consensus 45.0 15 0.00033 30.9 1.9 28 9-36 18-47 (310)
50 TIGR03866 PQQ_ABC_repeats PQQ- 44.0 1.4E+02 0.003 22.5 12.7 106 16-129 167-280 (300)
51 PF03117 Herpes_UL49_1: UL49 f 42.9 29 0.00064 28.7 3.3 38 13-50 126-163 (245)
52 smart00135 LY Low-density lipo 42.4 46 0.001 18.1 3.2 25 11-35 14-40 (43)
53 PF10282 Lactonase: Lactonase, 42.1 1.9E+02 0.0042 23.7 14.0 117 9-130 37-176 (345)
54 PF13570 PQQ_3: PQQ-like domai 41.8 51 0.0011 18.5 3.4 23 13-35 17-40 (40)
55 KOG2111|consensus 41.7 1.2E+02 0.0026 26.3 6.8 55 24-86 202-257 (346)
56 PF06979 DUF1301: Protein of u 40.3 1.2E+02 0.0026 22.7 5.9 54 52-118 60-116 (133)
57 KOG0282|consensus 40.0 1.6E+02 0.0035 26.8 7.6 98 17-126 270-370 (503)
58 PF10282 Lactonase: Lactonase, 39.9 2.1E+02 0.0046 23.5 9.7 100 26-129 13-118 (345)
59 KOG2925|consensus 39.5 21 0.00045 27.8 1.8 15 105-119 58-72 (167)
60 PRK04043 tolB translocation pr 39.4 2.5E+02 0.0055 24.2 12.0 67 11-86 193-264 (419)
61 KOG0265|consensus 38.0 1.3E+02 0.0029 25.9 6.5 61 14-83 99-161 (338)
62 smart00564 PQQ beta-propeller 37.7 64 0.0014 16.9 3.9 23 15-37 4-27 (33)
63 PRK01742 tolB translocation pr 37.5 1.8E+02 0.004 24.7 7.5 67 11-87 338-404 (429)
64 PF06977 SdiA-regulated: SdiA- 35.8 1.8E+02 0.004 23.6 6.9 68 51-127 23-93 (248)
65 KOG1036|consensus 35.6 95 0.0021 26.7 5.3 55 12-68 140-196 (323)
66 PTZ00420 coronin; Provisional 35.1 3.6E+02 0.0078 24.7 12.9 57 24-86 95-157 (568)
67 PRK04792 tolB translocation pr 35.1 3E+02 0.0064 23.8 11.4 68 10-86 266-337 (448)
68 PF14583 Pectate_lyase22: Olig 34.5 73 0.0016 28.0 4.6 30 16-45 91-121 (386)
69 PLN00181 protein SPA1-RELATED; 33.7 3.9E+02 0.0084 24.7 13.7 101 18-128 588-690 (793)
70 KOG1007|consensus 32.9 82 0.0018 27.3 4.5 51 17-69 184-234 (370)
71 PRK01029 tolB translocation pr 32.9 3.2E+02 0.0069 23.5 12.2 72 10-86 235-312 (428)
72 KOG0290|consensus 31.0 3.6E+02 0.0077 23.5 8.3 100 24-128 217-318 (364)
73 PTZ00420 coronin; Provisional 30.9 4.2E+02 0.0091 24.3 12.0 95 27-129 55-157 (568)
74 PF13619 KTSC: KTSC domain 30.8 84 0.0018 19.7 3.4 32 51-87 5-36 (60)
75 PRK11028 6-phosphogluconolacto 30.7 2.8E+02 0.006 22.1 12.8 105 17-128 90-205 (330)
76 PRK03629 tolB translocation pr 30.3 3.5E+02 0.0075 23.1 11.7 66 11-85 292-361 (429)
77 PF04053 Coatomer_WDAD: Coatom 30.2 1.3E+02 0.0028 26.5 5.5 53 12-69 111-164 (443)
78 KOG0288|consensus 30.1 4.1E+02 0.009 23.9 9.6 98 24-133 320-423 (459)
79 PRK04922 tolB translocation pr 29.9 3.5E+02 0.0075 23.0 12.0 67 11-86 297-367 (433)
80 PF13964 Kelch_6: Kelch motif 29.5 1.1E+02 0.0025 17.7 3.6 29 8-36 2-38 (50)
81 PF11715 Nup160: Nucleoporin N 29.2 2.2E+02 0.0049 24.9 6.8 22 18-39 231-253 (547)
82 KOG4283|consensus 28.5 1.9E+02 0.0042 25.2 6.0 13 24-36 122-134 (397)
83 KOG2055|consensus 28.5 2.1E+02 0.0046 26.0 6.5 97 24-124 407-508 (514)
84 PF04663 Phenol_monoox: Phenol 27.9 31 0.00068 23.1 1.0 15 15-29 8-23 (67)
85 KOG0278|consensus 27.7 3.9E+02 0.0085 22.9 8.0 78 24-112 163-244 (334)
86 PF09910 DUF2139: Uncharacteri 27.3 3.5E+02 0.0076 23.4 7.3 47 20-67 71-123 (339)
87 KOG1538|consensus 26.5 2.8E+02 0.0061 26.9 7.1 96 14-131 382-489 (1081)
88 KOG0270|consensus 25.8 1.4E+02 0.003 26.9 4.8 43 24-69 264-306 (463)
89 KOG1587|consensus 25.5 1.5E+02 0.0032 27.2 5.1 61 19-87 455-518 (555)
90 KOG0306|consensus 25.3 6.5E+02 0.014 24.6 9.6 100 18-128 336-442 (888)
91 KOG0639|consensus 24.4 51 0.0011 30.5 1.9 53 25-87 572-624 (705)
92 PRK11028 6-phosphogluconolacto 23.3 3.9E+02 0.0084 21.3 12.6 49 19-69 2-54 (330)
93 KOG2111|consensus 23.0 1.3E+02 0.0028 26.1 4.0 29 102-131 96-124 (346)
94 KOG0307|consensus 22.7 1.4E+02 0.003 29.6 4.6 71 51-129 255-328 (1049)
95 KOG0772|consensus 22.6 5E+02 0.011 24.3 7.8 98 24-128 289-394 (641)
96 KOG0310|consensus 22.1 5.3E+02 0.011 23.5 7.7 105 16-130 78-186 (487)
97 PF15184 TOMM6: Mitochondrial 21.0 18 0.00039 23.9 -1.2 8 104-111 46-53 (66)
98 TIGR03658 IsdH_HarA haptoglobi 20.8 5.2E+02 0.011 24.4 7.6 48 13-60 130-178 (895)
No 1
>KOG0292|consensus
Probab=100.00 E-value=5.8e-44 Score=323.83 Aligned_cols=129 Identities=47% Similarity=0.801 Sum_probs=124.6
Q ss_pred CEEEEecCCCCcceeeCCEEEEEeCCeEEEEECCCCCceeeEEee--cCCCCCceEEEeccCCCeEEEEeccCCCCCCce
Q psy74 1 MVVFKFERERPAYTVHNNVMYYVKERFLHRLDLTNSKDSVVMQLR--GGGRIPAHSISYNATEHSILVTTRNANNFENST 78 (134)
Q Consensus 1 miVFKLeRERPa~~~~~n~L~Yvkek~l~~~D~~t~~~~~~~slr--g~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~ 78 (134)
||||||||||||+++|+|.|||||||+||.|||.|.+|+++++|| |+.|.|||+|||||+|++||+|+. .|||.
T Consensus 315 m~VFkleRErpa~~v~~n~LfYvkd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~----~~n~~ 390 (1202)
T KOG0292|consen 315 MIVFKLERERPAYAVNGNGLFYVKDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSN----LDNGE 390 (1202)
T ss_pred eEEEEEcccCceEEEcCCEEEEEccceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEec----cCCCe
Confidence 899999999999999999999999999999999999999999999 779999999999999999999976 89999
Q ss_pred EEEEEccCCCcccccccCCccccceeEEEEeCCeEEEEec-CCEEEEEeCCCceEe
Q psy74 79 YDLYMIPKEESERKEVADGKRSTGISAVWVARNRFAVLDR-NHTILIKNLKNEFCT 133 (134)
Q Consensus 79 yeL~~lpk~~~~~~~~~~~~~g~g~~AvFVaRNRfAvldk-~~~i~Iknl~n~~~K 133 (134)
||||.+|+++++..+..+.++|+|.+|+|||||||||||| +++++||||+|+++|
T Consensus 391 y~L~~ipk~~~~~~~~~~~~k~tG~~a~fvarNrfavl~k~~~~v~ik~l~N~vtk 446 (1202)
T KOG0292|consen 391 YELVQIPKDSDGVSDGKDVKKGTGEGALFVARNRFAVLDKSNEQVVIKNLKNKVTK 446 (1202)
T ss_pred EEEEEecCcccccCCchhhhcCCCCceEEEEecceEEEEecCcceEEecccchhhh
Confidence 9999999998877777899999999999999999999999 999999999999987
No 2
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=99.60 E-value=1e-15 Score=132.69 Aligned_cols=95 Identities=31% Similarity=0.500 Sum_probs=65.4
Q ss_pred CCeEEEEECCCC-----CceeeEEee--cCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEccCCCcccccccCC
Q psy74 25 ERFLHRLDLTNS-----KDSVVMQLR--GGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEESERKEVADG 97 (134)
Q Consensus 25 ek~l~~~D~~t~-----~~~~~~slr--g~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lpk~~~~~~~~~~~ 97 (134)
+++|+.+|+.+. .+.+.+++| |+.+..|++|||||+++.|+|+ ++|.|++|+-. ...+.
T Consensus 1 ~~~i~~~~~~~~~~~~dg~~~~l~~k~lg~~~~~p~~ls~npngr~v~V~-------g~geY~iyt~~-------~~r~k 66 (443)
T PF04053_consen 1 HNEIRTANLKNISEIKDGERLPLSVKELGSCEIYPQSLSHNPNGRFVLVC-------GDGEYEIYTAL-------AWRNK 66 (443)
T ss_dssp -TEEEEEE--S-----TTS-B----EEEEE-SS--SEEEE-TTSSEEEEE-------ETTEEEEEETT-------TTEEE
T ss_pred CCceEEEECcCCCccCCCceeeEEeccCCCCCcCCeeEEECCCCCEEEEE-------cCCEEEEEEcc-------CCccc
Confidence 478999999997 677888999 8899999999999999999997 45799999811 12347
Q ss_pred ccccceeEEEEeCCeEEEEecCCEEEE-EeCCCceEe
Q psy74 98 KRSTGISAVWVARNRFAVLDRNHTILI-KNLKNEFCT 133 (134)
Q Consensus 98 ~~g~g~~AvFVaRNRfAvldk~~~i~I-knl~n~~~K 133 (134)
..|+|.+++|++||||||++++++|.| ||++++.+|
T Consensus 67 ~~G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k 103 (443)
T PF04053_consen 67 AFGSGLSFVWSSRNRYAVLESSSTIKIYKNFKNEVVK 103 (443)
T ss_dssp EEEE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT-
T ss_pred ccCceeEEEEecCccEEEEECCCeEEEEEcCccccce
Confidence 789999999999999999999999999 999887754
No 3
>KOG0276|consensus
Probab=96.55 E-value=0.023 Score=52.35 Aligned_cols=113 Identities=23% Similarity=0.428 Sum_probs=87.1
Q ss_pred CEEEEecCCCCcceeeCC-EEEEEeCCeEEEEECCC-CCc-----eee--EEee--cCCCCCceEEEeccCCCeEEEEec
Q psy74 1 MVVFKFERERPAYTVHNN-VMYYVKERFLHRLDLTN-SKD-----SVV--MQLR--GGGRIPAHSISYNATEHSILVTTR 69 (134)
Q Consensus 1 miVFKLeRERPa~~~~~n-~L~Yvkek~l~~~D~~t-~~~-----~~~--~slr--g~~~~~~~slsyNpae~~vLv~~~ 69 (134)
.|++||=||-|+..+..+ .++|-+-+.++.-++.+ +.+ ..- +++| |+.-.-|.+|-.||.-+.|.||
T Consensus 292 ~i~v~lgreeP~vsMd~~gKIiwa~~~ei~~~~~ks~~~~~ev~DgErL~LsvKeLgs~eiyPq~L~hsPNGrfV~Vc-- 369 (794)
T KOG0276|consen 292 SVTVKLGREEPAVSMDSNGKIIWAVHSEIQAVNLKSVGAQKEVTDGERLPLSVKELGSVEIYPQTLAHSPNGRFVVVC-- 369 (794)
T ss_pred cEEEEccCCCCceeecCCccEEEEcCceeeeeeceeccCcccccCCccccchhhhccccccchHHhccCCCCcEEEEe--
Confidence 378999999999999766 49999999999999987 333 223 3445 7777788999999999999999
Q ss_pred cCCCCCCceEEEEE-ccCCCcccccccCCccccceeEEEEeC-CeEEEEecCCEEEE-EeCC
Q psy74 70 NANNFENSTYDLYM-IPKEESERKEVADGKRSTGISAVWVAR-NRFAVLDRNHTILI-KNLK 128 (134)
Q Consensus 70 ~~~~~d~g~yeL~~-lpk~~~~~~~~~~~~~g~g~~AvFVaR-NRfAvldk~~~i~I-knl~ 128 (134)
..|-|-+|+ +.- -...-|+|.-=+|.+- |-|||-+.++.|.| ||++
T Consensus 370 -----gdGEyiIyTala~--------RnK~fG~~~eFvw~~dsne~avRes~~~vki~knfk 418 (794)
T KOG0276|consen 370 -----GDGEYIIYTALAL--------RNKAFGSGLEFVWAADSNEFAVRESNGNVKIFKNFK 418 (794)
T ss_pred -----cCccEEEEEeeeh--------hhcccccceeEEEcCCCCeEEEEecCCceEEEecce
Confidence 446899997 221 1234567888999998 99999998666555 4543
No 4
>KOG0772|consensus
Probab=91.04 E-value=1.4 Score=40.17 Aligned_cols=107 Identities=17% Similarity=0.218 Sum_probs=71.8
Q ss_pred eCCeEEEEECCC-CCceee-EEeecCCCCCceEEEeccCCCeEEEEeccCCCC--CCceEEEEEccCCCc--ccccccCC
Q psy74 24 KERFLHRLDLTN-SKDSVV-MQLRGGGRIPAHSISYNATEHSILVTTRNANNF--ENSTYDLYMIPKEES--ERKEVADG 97 (134)
Q Consensus 24 kek~l~~~D~~t-~~~~~~-~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~--d~g~yeL~~lpk~~~--~~~~~~~~ 97 (134)
.|-.+++|||+. ....+. -+|-+.--.+.++|.|.|+-.+|||.++.+... |---+++..+.|..- .+-..+-+
T Consensus 187 ~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKG 266 (641)
T KOG0772|consen 187 LDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKG 266 (641)
T ss_pred ccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCC
Confidence 677899999996 333322 222233444789999999999999998742111 333478887777644 22222334
Q ss_pred ccccceeEEEEeCCeEEEEec--CCEEEEEeCCCc
Q psy74 98 KRSTGISAVWVARNRFAVLDR--NHTILIKNLKNE 130 (134)
Q Consensus 98 ~~g~g~~AvFVaRNRfAvldk--~~~i~Iknl~n~ 130 (134)
+-..-++++|=-+||=-+|.- .+++.|=+++|-
T Consensus 267 Hia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~ 301 (641)
T KOG0772|consen 267 HIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNT 301 (641)
T ss_pred ceeeeeccccccCcccceEEecCCCcEEEEecCCc
Confidence 444556789999888888775 789999998764
No 5
>KOG0643|consensus
Probab=90.04 E-value=6.5 Score=33.42 Aligned_cols=120 Identities=16% Similarity=0.254 Sum_probs=78.0
Q ss_pred EEecCCCC-cceeeCCEEEEE---e----------CCeEEEEECCCCCceeeEEeecCCCCCceEEEeccCCCeEEEEec
Q psy74 4 FKFERERP-AYTVHNNVMYYV---K----------ERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTR 69 (134)
Q Consensus 4 FKLeRERP-a~~~~~n~L~Yv---k----------ek~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNpae~~vLv~~~ 69 (134)
|.|.-||- .|.=|.+.+|++ + |.-++.||..+++....... | .+.+.+.+++..+-+|++++
T Consensus 38 ~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~-~---~~Vk~~~F~~~gn~~l~~tD 113 (327)
T KOG0643|consen 38 YSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKT-N---SPVKRVDFSFGGNLILASTD 113 (327)
T ss_pred EecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeec-C---CeeEEEeeccCCcEEEEEeh
Confidence 44455554 234455666665 1 34457788888766443332 2 26899999999999999877
Q ss_pred cCCCC-CCceEEEEEccCCCccc--ccc---cCCccccceeEEEEeCCeEEEEec-CCEEEEEeCCC
Q psy74 70 NANNF-ENSTYDLYMIPKEESER--KEV---ADGKRSTGISAVWVARNRFAVLDR-NHTILIKNLKN 129 (134)
Q Consensus 70 ~~~~~-d~g~yeL~~lpk~~~~~--~~~---~~~~~g~g~~AvFVaRNRfAvldk-~~~i~Iknl~n 129 (134)
. .. -.|.-.++.++.+++.. .++ -....+....|+|=+-+.|.+--- ++.|.+.++.+
T Consensus 114 ~--~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~ 178 (327)
T KOG0643|consen 114 K--QMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDART 178 (327)
T ss_pred h--hcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEccc
Confidence 2 22 33556666677664311 110 012235688999999999999876 89999999975
No 6
>PRK05137 tolB translocation protein TolB; Provisional
Probab=85.42 E-value=22 Score=30.25 Aligned_cols=67 Identities=13% Similarity=0.327 Sum_probs=44.3
Q ss_pred CcceeeCCEEEEEe----CCeEEEEECCCCCceeeEEeecCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEccC
Q psy74 11 PAYTVHNNVMYYVK----ERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPK 86 (134)
Q Consensus 11 Pa~~~~~n~L~Yvk----ek~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lpk 86 (134)
|+|.-.++.|.|+. +.+|+.+|+.++....+....| ......+.|....++++.. .+|..+||.+.-
T Consensus 207 p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g----~~~~~~~SPDG~~la~~~~-----~~g~~~Iy~~d~ 277 (435)
T PRK05137 207 PRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPG----MTFAPRFSPDGRKVVMSLS-----QGGNTDIYTMDL 277 (435)
T ss_pred eEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCC----cccCcEECCCCCEEEEEEe-----cCCCceEEEEEC
Confidence 56666788999983 3589999998865554444433 2235577887777766544 344677776653
No 7
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=83.58 E-value=12 Score=30.50 Aligned_cols=106 Identities=17% Similarity=0.161 Sum_probs=63.0
Q ss_pred CCCcceeeCCEEEEEeC--CeEEEEECCCCCceeeEEeecC--------CCCCceEEEeccCCCeEEEEeccCCCCCCce
Q psy74 9 ERPAYTVHNNVMYYVKE--RFLHRLDLTNSKDSVVMQLRGG--------GRIPAHSISYNATEHSILVTTRNANNFENST 78 (134)
Q Consensus 9 ERPa~~~~~n~L~Yvke--k~l~~~D~~t~~~~~~~slrg~--------~~~~~~slsyNpae~~vLv~~~~~~~~d~g~ 78 (134)
+-+...++++.|||-+. +.|..|||.+++...-+.|.+. .|.+...+-+--.|+.+-|.|.. ..++|.
T Consensus 70 ~GtG~vVYngslYY~~~~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat--~~~~g~ 147 (250)
T PF02191_consen 70 QGTGHVVYNGSLYYNKYNSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYAT--EDNNGN 147 (250)
T ss_pred ccCCeEEECCcEEEEecCCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEec--CCCCCc
Confidence 44677889999999865 8999999999776655566522 22234445666778888888872 234444
Q ss_pred EEEEEccCCCccccc---ccCCccccceeEEEEeCCeEEEEec
Q psy74 79 YDLYMIPKEESERKE---VADGKRSTGISAVWVARNRFAVLDR 118 (134)
Q Consensus 79 yeL~~lpk~~~~~~~---~~~~~~g~g~~AvFVaRNRfAvldk 118 (134)
.-+-.|=.. +-.++ .+. -.....+.+|++-=-+=+++.
T Consensus 148 ivvskld~~-tL~v~~tw~T~-~~k~~~~naFmvCGvLY~~~s 188 (250)
T PF02191_consen 148 IVVSKLDPE-TLSVEQTWNTS-YPKRSAGNAFMVCGVLYATDS 188 (250)
T ss_pred EEEEeeCcc-cCceEEEEEec-cCchhhcceeeEeeEEEEEEE
Confidence 444333211 11111 111 122345567777776666665
No 8
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=83.29 E-value=5 Score=32.72 Aligned_cols=42 Identities=12% Similarity=0.152 Sum_probs=30.3
Q ss_pred CCeEEEEECCCCCceeeEEee-cCCCCCceEEEeccCCCeEEEE
Q psy74 25 ERFLHRLDLTNSKDSVVMQLR-GGGRIPAHSISYNATEHSILVT 67 (134)
Q Consensus 25 ek~l~~~D~~t~~~~~~~slr-g~~~~~~~slsyNpae~~vLv~ 67 (134)
++.-++||+.+++.. ...|. .+......+|+|||.|+.+-++
T Consensus 194 ~~I~yafDt~t~~~~-~~~i~f~~~~~~~~~l~YNP~dk~LY~w 236 (250)
T PF02191_consen 194 TEIFYAFDTYTGKEE-DVSIPFPNPYGNISMLSYNPRDKKLYAW 236 (250)
T ss_pred cEEEEEEECCCCcee-ceeeeeccccCceEeeeECCCCCeEEEE
Confidence 345689999985544 23344 4455567899999999998887
No 9
>KOG1446|consensus
Probab=80.32 E-value=36 Score=29.07 Aligned_cols=112 Identities=17% Similarity=0.262 Sum_probs=68.6
Q ss_pred CCCcceeeCCEEEEE---eCCeEEEEECCCCCceeeEEee-c-CCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEE
Q psy74 9 ERPAYTVHNNVMYYV---KERFLHRLDLTNSKDSVVMQLR-G-GGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYM 83 (134)
Q Consensus 9 ERPa~~~~~n~L~Yv---kek~l~~~D~~t~~~~~~~slr-g-~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~ 83 (134)
-||..|....-|++. ....|+.||+..-...|.-... + +....-..|.|.|--..+||++. .+-.|-|-.
T Consensus 142 ~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~-----~s~~~~lDA 216 (311)
T KOG1446|consen 142 GRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTN-----ASFIYLLDA 216 (311)
T ss_pred CCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeC-----CCcEEEEEc
Confidence 466666666556664 3447888888774445555555 3 23334466888898999999855 222333322
Q ss_pred ccCCCcccccccCCccccc---eeEEEEeCCeEEEEec-CCEEEEEeCC
Q psy74 84 IPKEESERKEVADGKRSTG---ISAVWVARNRFAVLDR-NHTILIKNLK 128 (134)
Q Consensus 84 lpk~~~~~~~~~~~~~g~g---~~AvFVaRNRfAvldk-~~~i~Iknl~ 128 (134)
+....-+.- +.....+ .+|+|.==-+|++--. +++|.|.|++
T Consensus 217 f~G~~~~tf---s~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~ 262 (311)
T KOG1446|consen 217 FDGTVKSTF---SGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLE 262 (311)
T ss_pred cCCcEeeeE---eeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcC
Confidence 222211111 1111222 7899999999998888 7999999995
No 10
>PRK01742 tolB translocation protein TolB; Provisional
Probab=80.03 E-value=35 Score=29.05 Aligned_cols=66 Identities=20% Similarity=0.376 Sum_probs=43.5
Q ss_pred CcceeeCCEEEEE-eC---CeEEEEECCCCCceeeEEeecCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEcc
Q psy74 11 PAYTVHNNVMYYV-KE---RFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIP 85 (134)
Q Consensus 11 Pa~~~~~n~L~Yv-ke---k~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lp 85 (134)
|++.-.++.|.|+ .+ .+|+.+|+.++....+..++|. .....+.|...-++++.. .+|..+|+.+.
T Consensus 209 p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~----~~~~~wSPDG~~La~~~~-----~~g~~~Iy~~d 278 (429)
T PRK01742 209 PAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH----NGAPAFSPDGSRLAFASS-----KDGVLNIYVMG 278 (429)
T ss_pred ceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc----cCceeECCCCCEEEEEEe-----cCCcEEEEEEE
Confidence 6777788899998 32 3799999988655455445442 124678887776766543 33456777654
No 11
>smart00284 OLF Olfactomedin-like domains.
Probab=79.49 E-value=7.1 Score=32.23 Aligned_cols=50 Identities=12% Similarity=0.176 Sum_probs=34.6
Q ss_pred CeEEEEECCCCCceeeEEee-cCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEE
Q psy74 26 RFLHRLDLTNSKDSVVMQLR-GGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYM 83 (134)
Q Consensus 26 k~l~~~D~~t~~~~~~~slr-g~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~ 83 (134)
+.-++||..++++.. ..|- .+......+|.|||.|+.+=++ |+|..=+|.
T Consensus 200 ~I~yayDt~t~~~~~-~~i~f~n~y~~~s~l~YNP~d~~LY~w-------dng~~l~Y~ 250 (255)
T smart00284 200 KVFYAYDTNTGKEGH-LDIPFENMYEYISMLDYNPNDRKLYAW-------NNGHLVHYD 250 (255)
T ss_pred EEEEEEECCCCccce-eeeeeccccccceeceeCCCCCeEEEE-------eCCeEEEEE
Confidence 668899999865443 3333 4455567889999999998887 555554443
No 12
>PRK04792 tolB translocation protein TolB; Provisional
Probab=79.07 E-value=42 Score=29.03 Aligned_cols=69 Identities=13% Similarity=0.256 Sum_probs=45.3
Q ss_pred CCcceeeCCEEEEEe-C---CeEEEEECCCCCceeeEEeecCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEcc
Q psy74 10 RPAYTVHNNVMYYVK-E---RFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIP 85 (134)
Q Consensus 10 RPa~~~~~n~L~Yvk-e---k~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lp 85 (134)
-|.+.-.++.|+|+. + .+|+.+|+.+++...+....|. .....+.|....++++.. .+|..+||.+.
T Consensus 222 ~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~----~~~~~wSPDG~~La~~~~-----~~g~~~Iy~~d 292 (448)
T PRK04792 222 SPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGI----NGAPRFSPDGKKLALVLS-----KDGQPEIYVVD 292 (448)
T ss_pred CceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCC----cCCeeECCCCCEEEEEEe-----CCCCeEEEEEE
Confidence 377777888999982 2 2699999988665555444431 124577788777776544 34567888765
Q ss_pred CC
Q psy74 86 KE 87 (134)
Q Consensus 86 k~ 87 (134)
-+
T Consensus 293 l~ 294 (448)
T PRK04792 293 IA 294 (448)
T ss_pred CC
Confidence 43
No 13
>KOG0294|consensus
Probab=78.97 E-value=22 Score=30.82 Aligned_cols=61 Identities=16% Similarity=0.241 Sum_probs=38.0
Q ss_pred eCCeEEEEECCCCCceeeEEee-cC----CCCCceEEEe---ccCCCeEEEEeccCCCCCCceEEEEEccCCCccc
Q psy74 24 KERFLHRLDLTNSKDSVVMQLR-GG----GRIPAHSISY---NATEHSILVTTRNANNFENSTYDLYMIPKEESER 91 (134)
Q Consensus 24 kek~l~~~D~~t~~~~~~~slr-g~----~~~~~~slsy---Npae~~vLv~~~~~~~~d~g~yeL~~lpk~~~~~ 91 (134)
.|-.|+.||+.+.++...+... |. .+++|++.|. -..+..|+++ +-|.++++..=|..++.
T Consensus 61 sDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw-------~~~~W~~~~slK~H~~~ 129 (362)
T KOG0294|consen 61 SDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIW-------RVGSWELLKSLKAHKGQ 129 (362)
T ss_pred CCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEE-------EcCCeEEeeeecccccc
Confidence 7899999999998777666555 53 3344554331 1344455555 33578888766665543
No 14
>KOG0268|consensus
Probab=77.99 E-value=2.9 Score=36.66 Aligned_cols=48 Identities=25% Similarity=0.368 Sum_probs=30.9
Q ss_pred eEEEEECCCCCceeeEEee-cCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEE
Q psy74 27 FLHRLDLTNSKDSVVMQLR-GGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYM 83 (134)
Q Consensus 27 ~l~~~D~~t~~~~~~~slr-g~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~ 83 (134)
++..||.+ ++.|+.++. |.. ...+++|||.|.+||.+.+ +|+ +.-||.
T Consensus 168 ~i~IWD~~--R~~Pv~smswG~D--ti~svkfNpvETsILas~~----sDr-sIvLyD 216 (433)
T KOG0268|consen 168 QIDIWDEQ--RDNPVSSMSWGAD--SISSVKFNPVETSILASCA----SDR-SIVLYD 216 (433)
T ss_pred eeeecccc--cCCccceeecCCC--ceeEEecCCCcchheeeec----cCC-ceEEEe
Confidence 34555544 455666665 421 2478999999999999977 565 344443
No 15
>KOG2055|consensus
Probab=76.12 E-value=26 Score=31.64 Aligned_cols=106 Identities=12% Similarity=0.134 Sum_probs=68.6
Q ss_pred ceeeCC-EEEEE-eCCeEEEEECCCCCceeeEEeecCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEE-ccCCCc
Q psy74 13 YTVHNN-VMYYV-KERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYM-IPKEES 89 (134)
Q Consensus 13 ~~~~~n-~L~Yv-kek~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~-lpk~~~ 89 (134)
|+-.|. .++.- +.|++++||+++.+-.++-++.|-.--..+..-..|-.+-|++. ..+|...|+. ..+.--
T Consensus 265 f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~------G~~G~I~lLhakT~eli 338 (514)
T KOG2055|consen 265 FAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIA------GNNGHIHLLHAKTKELI 338 (514)
T ss_pred ecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEc------ccCceEEeehhhhhhhh
Confidence 444666 56665 99999999999977777766665432233444444666644443 3556666653 333322
Q ss_pred ccccccCCccccceeEEEEeCCeEEEEec-CCEEEEEeCC
Q psy74 90 ERKEVADGKRSTGISAVWVARNRFAVLDR-NHTILIKNLK 128 (134)
Q Consensus 90 ~~~~~~~~~~g~g~~AvFVaRNRfAvldk-~~~i~Iknl~ 128 (134)
+. =...|...+-+|-++-+-.+... ++++.+=||.
T Consensus 339 ~s----~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~ 374 (514)
T KOG2055|consen 339 TS----FKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLR 374 (514)
T ss_pred he----eeeccEEeeEEEecCCcEEEEEcCCceEEEEecC
Confidence 22 24455667788889999888887 8899998884
No 16
>KOG0266|consensus
Probab=75.56 E-value=53 Score=28.43 Aligned_cols=96 Identities=17% Similarity=0.269 Sum_probs=57.6
Q ss_pred eCCeEEEEECCCCCceeeEEeecCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEccCCCccccc-ccCCccccc
Q psy74 24 KERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEESERKE-VADGKRSTG 102 (134)
Q Consensus 24 kek~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lpk~~~~~~~-~~~~~~g~g 102 (134)
.|+.||.||+ ...-..+..++| +-....++.|+|..+ .|++-. +.++--+..+... ... .-....+ +
T Consensus 223 ~D~tiriwd~-~~~~~~~~~l~g-H~~~v~~~~f~p~g~-~i~Sgs-----~D~tvriWd~~~~---~~~~~l~~hs~-~ 290 (456)
T KOG0266|consen 223 DDKTLRIWDL-KDDGRNLKTLKG-HSTYVTSVAFSPDGN-LLVSGS-----DDGTVRIWDVRTG---ECVRKLKGHSD-G 290 (456)
T ss_pred CCceEEEeec-cCCCeEEEEecC-CCCceEEEEecCCCC-EEEEec-----CCCcEEEEeccCC---eEEEeeeccCC-c
Confidence 8999999999 333356677775 334569999999994 444322 3345555544441 111 1123333 5
Q ss_pred eeEEEEeCC--eEEEEecCCEEEEEeCCCce
Q psy74 103 ISAVWVARN--RFAVLDRNHTILIKNLKNEF 131 (134)
Q Consensus 103 ~~AvFVaRN--RfAvldk~~~i~Iknl~n~~ 131 (134)
.+++.+.++ .++.-+.++.|.|-|+....
T Consensus 291 is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~ 321 (456)
T KOG0266|consen 291 ISGLAFSPDGNLLVSASYDGTIRVWDLETGS 321 (456)
T ss_pred eEEEEECCCCCEEEEcCCCccEEEEECCCCc
Confidence 555555543 44444458999999997543
No 17
>PRK02889 tolB translocation protein TolB; Provisional
Probab=75.50 E-value=50 Score=28.13 Aligned_cols=68 Identities=16% Similarity=0.389 Sum_probs=45.6
Q ss_pred CcceeeCCEEEEEe----CCeEEEEECCCCCceeeEEeecCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEccC
Q psy74 11 PAYTVHNNVMYYVK----ERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPK 86 (134)
Q Consensus 11 Pa~~~~~n~L~Yvk----ek~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lpk 86 (134)
|+++-.++.|+|+. +.+|+.+|+.++....+....|. .....+.|....++++.. .+|..+||.+.-
T Consensus 201 p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~----~~~~~~SPDG~~la~~~~-----~~g~~~Iy~~d~ 271 (427)
T PRK02889 201 PAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGS----NSAPAWSPDGRTLAVALS-----RDGNSQIYTVNA 271 (427)
T ss_pred ceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCC----ccceEECCCCCEEEEEEc-----cCCCceEEEEEC
Confidence 66667788899983 24699999998765555444432 235678888877776544 345678887654
Q ss_pred C
Q psy74 87 E 87 (134)
Q Consensus 87 ~ 87 (134)
+
T Consensus 272 ~ 272 (427)
T PRK02889 272 D 272 (427)
T ss_pred C
Confidence 3
No 18
>smart00284 OLF Olfactomedin-like domains.
Probab=74.67 E-value=32 Score=28.40 Aligned_cols=73 Identities=18% Similarity=0.158 Sum_probs=46.9
Q ss_pred CCcceeeCCEEEEEe--CCeEEEEECCCCCceeeEEee--c------CCCCCceEEEeccCCCeEEEEeccCCCCCCceE
Q psy74 10 RPAYTVHNNVMYYVK--ERFLHRLDLTNSKDSVVMQLR--G------GGRIPAHSISYNATEHSILVTTRNANNFENSTY 79 (134)
Q Consensus 10 RPa~~~~~n~L~Yvk--ek~l~~~D~~t~~~~~~~slr--g------~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~y 79 (134)
-+...++++.|||-+ .+.|..|||.+........|- | -.|.+...|-+--.|+.+=|.|. +..++|..
T Consensus 76 GtG~VVYngslYY~~~~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYa--t~~~~g~i 153 (255)
T smart00284 76 GTGVVVYNGSLYFNKFNSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYA--TEQNAGKI 153 (255)
T ss_pred cccEEEECceEEEEecCCccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEe--ccCCCCCE
Confidence 345678999999986 568999999996654444443 1 13334455666677887777777 33344555
Q ss_pred EEEEc
Q psy74 80 DLYMI 84 (134)
Q Consensus 80 eL~~l 84 (134)
-|-.|
T Consensus 154 vvSkL 158 (255)
T smart00284 154 VISKL 158 (255)
T ss_pred EEEee
Confidence 54444
No 19
>PRK00178 tolB translocation protein TolB; Provisional
Probab=74.64 E-value=50 Score=27.72 Aligned_cols=69 Identities=10% Similarity=0.266 Sum_probs=43.6
Q ss_pred CCcceeeCCEEEEEe-C---CeEEEEECCCCCceeeEEeecCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEcc
Q psy74 10 RPAYTVHNNVMYYVK-E---RFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIP 85 (134)
Q Consensus 10 RPa~~~~~n~L~Yvk-e---k~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lp 85 (134)
.|+++-.++.|.|+. + .+|..+|+.++....+...+|. .....+.|...-+++... .+|..+|+.+.
T Consensus 203 ~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~----~~~~~~SpDG~~la~~~~-----~~g~~~Iy~~d 273 (430)
T PRK00178 203 SPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGL----NGAPAWSPDGSKLAFVLS-----KDGNPEIYVMD 273 (430)
T ss_pred eeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCC----cCCeEECCCCCEEEEEEc-----cCCCceEEEEE
Confidence 356666788999983 2 3699999988655554444331 224677888776666543 23456777665
Q ss_pred CC
Q psy74 86 KE 87 (134)
Q Consensus 86 k~ 87 (134)
-+
T Consensus 274 ~~ 275 (430)
T PRK00178 274 LA 275 (430)
T ss_pred CC
Confidence 43
No 20
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=74.62 E-value=29 Score=24.91 Aligned_cols=101 Identities=15% Similarity=0.209 Sum_probs=60.4
Q ss_pred CCEEEEE-eCCeEEEEECCCCCceeeEEeecCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEccCCCccccccc
Q psy74 17 NNVMYYV-KERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEESERKEVA 95 (134)
Q Consensus 17 ~n~L~Yv-kek~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lpk~~~~~~~~~ 95 (134)
++.|+.. .+..++.||+.+.. ....+.+ ...+...+.+.|....+++.. .+|...++.+..... ...-
T Consensus 21 ~~~l~~~~~~g~i~i~~~~~~~--~~~~~~~-~~~~i~~~~~~~~~~~l~~~~------~~~~i~i~~~~~~~~--~~~~ 89 (289)
T cd00200 21 GKLLATGSGDGTIKVWDLETGE--LLRTLKG-HTGPVRDVAASADGTYLASGS------SDKTIRLWDLETGEC--VRTL 89 (289)
T ss_pred CCEEEEeecCcEEEEEEeeCCC--cEEEEec-CCcceeEEEECCCCCEEEEEc------CCCeEEEEEcCcccc--eEEE
Confidence 3556665 69999999998754 2333332 112346888888875555542 345666666554211 0011
Q ss_pred CCccccceeEEEEeCCeEEEEec-CCEEEEEeCC
Q psy74 96 DGKRSTGISAVWVARNRFAVLDR-NHTILIKNLK 128 (134)
Q Consensus 96 ~~~~g~g~~AvFVaRNRfAvldk-~~~i~Iknl~ 128 (134)
....+...+..|...+++++... ++.|.|.|+.
T Consensus 90 ~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~ 123 (289)
T cd00200 90 TGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVE 123 (289)
T ss_pred eccCCcEEEEEEcCCCCEEEEecCCCeEEEEECC
Confidence 12233455566766667777776 8889999986
No 21
>KOG1517|consensus
Probab=72.04 E-value=61 Score=32.50 Aligned_cols=113 Identities=18% Similarity=0.143 Sum_probs=75.0
Q ss_pred eeCCEEEE-EeCCeEEEEECCC-CCceeeEEee-cCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEccCCCccc
Q psy74 15 VHNNVMYY-VKERFLHRLDLTN-SKDSVVMQLR-GGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEESER 91 (134)
Q Consensus 15 ~~~n~L~Y-vkek~l~~~D~~t-~~~~~~~slr-g~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lpk~~~~~ 91 (134)
+++|++-= .-|..||.||... ..|.+++.-| .+.+.+.-.+|.++.--.=||.- ..+|...+..+-......
T Consensus 1219 ~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSg-----s~~G~I~~~DlR~~~~e~ 1293 (1387)
T KOG1517|consen 1219 VHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSG-----SQDGDIQLLDLRMSSKET 1293 (1387)
T ss_pred cCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeee-----ccCCeEEEEecccCcccc
Confidence 35565544 3899999999998 7788888888 77777778888887655555542 345567776654432211
Q ss_pred ccccCCcc--ccceeEEEEeCCeEEEEec-CCEEEEEeCCCceE
Q psy74 92 KEVADGKR--STGISAVWVARNRFAVLDR-NHTILIKNLKNEFC 132 (134)
Q Consensus 92 ~~~~~~~~--g~g~~AvFVaRNRfAvldk-~~~i~Iknl~n~~~ 132 (134)
.-.-...+ |+.++|++|-+.-=.+-.- .+.|.|.+++++..
T Consensus 1294 ~~~iv~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G~~l 1337 (1387)
T KOG1517|consen 1294 FLTIVAHWEYGSALTALTVHEHAPIIASGSAQLIKIYSLSGEQL 1337 (1387)
T ss_pred cceeeeccccCccceeeeeccCCCeeeecCcceEEEEecChhhh
Confidence 11112334 5559999998875554444 58899999987654
No 22
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=71.71 E-value=56 Score=26.93 Aligned_cols=66 Identities=18% Similarity=0.343 Sum_probs=42.4
Q ss_pred CcceeeCCEEEEEe-C---CeEEEEECCCCCceeeEEeecCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEcc
Q psy74 11 PAYTVHNNVMYYVK-E---RFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIP 85 (134)
Q Consensus 11 Pa~~~~~n~L~Yvk-e---k~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lp 85 (134)
|+++-.++.|+|+. + ..|+.||+.+++...+....| ......+.|....++++.. .+|..+|+.+.
T Consensus 195 p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~----~~~~~~~spDg~~l~~~~~-----~~~~~~i~~~d 264 (417)
T TIGR02800 195 PAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPG----MNGAPAFSPDGSKLAVSLS-----KDGNPDIYVMD 264 (417)
T ss_pred ccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCC----CccceEECCCCCEEEEEEC-----CCCCccEEEEE
Confidence 66777788899983 2 479999998865544444433 1234677887777776644 23345666554
No 23
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=71.47 E-value=66 Score=27.70 Aligned_cols=106 Identities=14% Similarity=0.207 Sum_probs=62.0
Q ss_pred CcceeeCCEEEEEeCC------------eEEEEECCCCCceeeEEee--cCCCCCceEEEeccCCCeEEEEeccCCCCCC
Q psy74 11 PAYTVHNNVMYYVKER------------FLHRLDLTNSKDSVVMQLR--GGGRIPAHSISYNATEHSILVTTRNANNFEN 76 (134)
Q Consensus 11 Pa~~~~~n~L~Yvkek------------~l~~~D~~t~~~~~~~slr--g~~~~~~~slsyNpae~~vLv~~~~~~~~d~ 76 (134)
-|.+.+|+.+--+++. .|+.|+..-+ .+-++. + -..-.|.++..|.-|+|. ++
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~sG~---ll~~i~w~~---~~iv~~~wt~~e~LvvV~-------~d 100 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSSGK---LLSSIPWDS---GRIVGMGWTDDEELVVVQ-------SD 100 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECCCCC---EeEEEEECC---CCEEEEEECCCCeEEEEE-------cC
Confidence 3556677777777665 5666665432 333333 2 257788888999999887 44
Q ss_pred ceEEEEEccCCC---cc-cccccCCccccceeEEEEeCCeEEEEecCCE-EEEEeCCCc
Q psy74 77 STYDLYMIPKEE---SE-RKEVADGKRSTGISAVWVARNRFAVLDRNHT-ILIKNLKNE 130 (134)
Q Consensus 77 g~yeL~~lpk~~---~~-~~~~~~~~~g~g~~AvFVaRNRfAvldk~~~-i~Iknl~n~ 130 (134)
|.+-+|.+...- .+ ..+.. .-...-.++++...|-+|+|..++. +.+.|.+.+
T Consensus 101 G~v~vy~~~G~~~fsl~~~i~~~-~v~e~~i~~~~~~~~GivvLt~~~~~~~v~n~~~~ 158 (410)
T PF04841_consen 101 GTVRVYDLFGEFQFSLGEEIEEE-KVLECRIFAIWFYKNGIVVLTGNNRFYVVNNIDEP 158 (410)
T ss_pred CEEEEEeCCCceeechhhhcccc-CcccccccccccCCCCEEEECCCCeEEEEeCcccc
Confidence 677777543221 01 01001 1111125677888899999988555 555555543
No 24
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.34 E-value=37 Score=29.03 Aligned_cols=81 Identities=19% Similarity=0.283 Sum_probs=50.0
Q ss_pred CCCcceeeCCEEEEEeCCe-EEEEECCCCC-ceeeEEeec--C--CC--CCceEEEeccCCCeEEEEeccC-----CCCC
Q psy74 9 ERPAYTVHNNVMYYVKERF-LHRLDLTNSK-DSVVMQLRG--G--GR--IPAHSISYNATEHSILVTTRNA-----NNFE 75 (134)
Q Consensus 9 ERPa~~~~~n~L~Yvkek~-l~~~D~~t~~-~~~~~slrg--~--~~--~~~~slsyNpae~~vLv~~~~~-----~~~d 75 (134)
|--|++-.+..||+.|||. +..|..+... ...+-...+ . .+ .-..+|.||+..+..||.++.+ .+.+
T Consensus 184 EGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~ 263 (316)
T COG3204 184 EGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS 263 (316)
T ss_pred eeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecC
Confidence 4557888888999999987 6666666422 111111111 1 11 1356789999988888887721 1235
Q ss_pred CceEEEEEccCCCc
Q psy74 76 NSTYDLYMIPKEES 89 (134)
Q Consensus 76 ~g~yeL~~lpk~~~ 89 (134)
|..-++..|-+...
T Consensus 264 G~~~~~lsL~~g~~ 277 (316)
T COG3204 264 GEVIELLSLTKGNH 277 (316)
T ss_pred CCeeeeEEeccCCC
Confidence 55677777777643
No 25
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.35 E-value=23 Score=30.33 Aligned_cols=68 Identities=15% Similarity=0.310 Sum_probs=42.0
Q ss_pred ceEEEeccCCCeEEEEeccCCCCCCceEEEEEccCCCc--ccccccCCccccceeEEEEeCCeEEEEec-CCEEEEEeCC
Q psy74 52 AHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEES--ERKEVADGKRSTGISAVWVARNRFAVLDR-NHTILIKNLK 128 (134)
Q Consensus 52 ~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lpk~~~--~~~~~~~~~~g~g~~AvFVaRNRfAvldk-~~~i~Iknl~ 128 (134)
..+|.|||..++...+.. . -=+++.|.+++. +... -+.-. .-=+--|++.|+||+-|. .++|.+--++
T Consensus 88 vS~LTynp~~rtLFav~n----~---p~~iVElt~~GdlirtiP-L~g~~-DpE~Ieyig~n~fvi~dER~~~l~~~~vd 158 (316)
T COG3204 88 VSSLTYNPDTRTLFAVTN----K---PAAIVELTKEGDLIRTIP-LTGFS-DPETIEYIGGNQFVIVDERDRALYLFTVD 158 (316)
T ss_pred ccceeeCCCcceEEEecC----C---CceEEEEecCCceEEEec-ccccC-ChhHeEEecCCEEEEEehhcceEEEEEEc
Confidence 578999999998777644 2 234555555543 1111 11111 112356999999999997 7777766654
No 26
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=68.64 E-value=40 Score=24.12 Aligned_cols=99 Identities=12% Similarity=0.167 Sum_probs=58.0
Q ss_pred CEEEEE-e-CCeEEEEECCCCCceeeEEeecCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEccCCCc-ccccc
Q psy74 18 NVMYYV-K-ERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEES-ERKEV 94 (134)
Q Consensus 18 n~L~Yv-k-ek~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lpk~~~-~~~~~ 94 (134)
+.++++ . +..|+.||+.+.+....+.. ...+...+.++|....++++.. +|...++.+..... ..
T Consensus 147 ~~~l~~~~~~~~i~i~d~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~------~~~i~i~d~~~~~~~~~--- 214 (289)
T cd00200 147 GTFVASSSQDGTIKLWDLRTGKCVATLTG---HTGEVNSVAFSPDGEKLLSSSS------DGTIKLWDLSTGKCLGT--- 214 (289)
T ss_pred CCEEEEEcCCCcEEEEEccccccceeEec---CccccceEEECCCcCEEEEecC------CCcEEEEECCCCceecc---
Confidence 345554 4 99999999986443322221 2225788999998877777632 45666666543211 11
Q ss_pred cCCccccceeEEEEeCCeEEEEec-CCEEEEEeCC
Q psy74 95 ADGKRSTGISAVWVARNRFAVLDR-NHTILIKNLK 128 (134)
Q Consensus 95 ~~~~~g~g~~AvFVaRNRfAvldk-~~~i~Iknl~ 128 (134)
-....+...+..|-..+++++... +++|.|.++.
T Consensus 215 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~ 249 (289)
T cd00200 215 LRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLR 249 (289)
T ss_pred hhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcC
Confidence 112223344455655455655555 7889888886
No 27
>KOG1407|consensus
Probab=66.97 E-value=36 Score=28.91 Aligned_cols=61 Identities=13% Similarity=0.261 Sum_probs=43.3
Q ss_pred EEEEE--eCCeEEEEECCCCCceeeEEee-cC---CCCCc---------------------------------eEEEecc
Q psy74 19 VMYYV--KERFLHRLDLTNSKDSVVMQLR-GG---GRIPA---------------------------------HSISYNA 59 (134)
Q Consensus 19 ~L~Yv--kek~l~~~D~~t~~~~~~~slr-g~---~~~~~---------------------------------~slsyNp 59 (134)
.||.. -+|.+|.||+.+.+-+.-...+ |+ .|.|. ..+++|-
T Consensus 78 d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~ 157 (313)
T KOG1407|consen 78 DLFATASGDKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNN 157 (313)
T ss_pred cceEEecCCceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecC
Confidence 36664 8999999999987766666666 33 34332 4567776
Q ss_pred CCCeEEEEeccCCCCCCceEEEEEcc
Q psy74 60 TEHSILVTTRNANNFENSTYDLYMIP 85 (134)
Q Consensus 60 ae~~vLv~~~~~~~~d~g~yeL~~lp 85 (134)
.++.+.++ ..+|+.++...|
T Consensus 158 ~nd~Fflt------~GlG~v~ILsyp 177 (313)
T KOG1407|consen 158 SNDLFFLT------NGLGCVEILSYP 177 (313)
T ss_pred CCCEEEEe------cCCceEEEEecc
Confidence 67777776 345899999998
No 28
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=64.97 E-value=78 Score=26.05 Aligned_cols=68 Identities=18% Similarity=0.285 Sum_probs=38.4
Q ss_pred CcceeeCCEEEEEe----CCeEEEEECCCCCceeeEEeecCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEccC
Q psy74 11 PAYTVHNNVMYYVK----ERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPK 86 (134)
Q Consensus 11 Pa~~~~~n~L~Yvk----ek~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lpk 86 (134)
|+|.-.++.|+|.. +.+|+.+|+.+.....+.. +.. ......+.|...-+++++. .+|...+|.+..
T Consensus 239 ~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~--~~~--~~~~~~~s~dg~~l~~~s~-----~~g~~~iy~~d~ 309 (417)
T TIGR02800 239 PAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTN--GPG--IDTEPSWSPDGKSIAFTSD-----RGGSPQIYMMDA 309 (417)
T ss_pred eEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCC--CCC--CCCCEEECCCCCEEEEEEC-----CCCCceEEEEEC
Confidence 44544667788873 2369999998754332221 111 1234467787776766644 334557776554
Q ss_pred C
Q psy74 87 E 87 (134)
Q Consensus 87 ~ 87 (134)
+
T Consensus 310 ~ 310 (417)
T TIGR02800 310 D 310 (417)
T ss_pred C
Confidence 3
No 29
>KOG0302|consensus
Probab=63.99 E-value=15 Score=32.56 Aligned_cols=58 Identities=19% Similarity=0.317 Sum_probs=43.5
Q ss_pred eCCeEEEEECCC-CCceeeEEeecCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEccCC
Q psy74 24 KERFLHRLDLTN-SKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKE 87 (134)
Q Consensus 24 kek~l~~~D~~t-~~~~~~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lpk~ 87 (134)
-|..++.||+.+ +...|+.+.+ -...|..+|-++|.|-+++..++ +|+ ..-|-.|+-+
T Consensus 322 DdGt~~iwDLR~~~~~~pVA~fk-~Hk~pItsieW~p~e~s~iaasg----~D~-QitiWDlsvE 380 (440)
T KOG0302|consen 322 DDGTLSIWDLRQFKSGQPVATFK-YHKAPITSIEWHPHEDSVIAASG----EDN-QITIWDLSVE 380 (440)
T ss_pred CCceEEEEEhhhccCCCcceeEE-eccCCeeEEEeccccCceEEecc----CCC-cEEEEEeecc
Confidence 577899999999 7778999888 12338899999999999999877 455 3444444433
No 30
>PLN00181 protein SPA1-RELATED; Provisional
Probab=60.02 E-value=1.4e+02 Score=27.49 Aligned_cols=94 Identities=16% Similarity=0.280 Sum_probs=57.9
Q ss_pred eCCeEEEEECCCCCceeeEEeecCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEccCCCc-ccccccCCccccc
Q psy74 24 KERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEES-ERKEVADGKRSTG 102 (134)
Q Consensus 24 kek~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lpk~~~-~~~~~~~~~~g~g 102 (134)
.|..|+.||+.+.. .+..+++ +--+..++.++|.+..+|++.. +.|..-++.+..... ... .. .+..
T Consensus 553 ~Dg~v~lWd~~~~~--~~~~~~~-H~~~V~~l~~~p~~~~~L~Sgs-----~Dg~v~iWd~~~~~~~~~~---~~-~~~v 620 (793)
T PLN00181 553 FEGVVQVWDVARSQ--LVTEMKE-HEKRVWSIDYSSADPTLLASGS-----DDGSVKLWSINQGVSIGTI---KT-KANI 620 (793)
T ss_pred CCCeEEEEECCCCe--EEEEecC-CCCCEEEEEEcCCCCCEEEEEc-----CCCEEEEEECCCCcEEEEE---ec-CCCe
Confidence 79999999998753 3344443 2236789999998887777755 345667766543311 111 11 1233
Q ss_pred eeEEEEe--CCeEEEEecCCEEEEEeCCC
Q psy74 103 ISAVWVA--RNRFAVLDRNHTILIKNLKN 129 (134)
Q Consensus 103 ~~AvFVa--RNRfAvldk~~~i~Iknl~n 129 (134)
.+..|-. -+.||+=..+++|.|.|+.+
T Consensus 621 ~~v~~~~~~g~~latgs~dg~I~iwD~~~ 649 (793)
T PLN00181 621 CCVQFPSESGRSLAFGSADHKVYYYDLRN 649 (793)
T ss_pred EEEEEeCCCCCEEEEEeCCCeEEEEECCC
Confidence 4455543 34566666688888888864
No 31
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=59.72 E-value=1.1e+02 Score=26.19 Aligned_cols=116 Identities=13% Similarity=0.230 Sum_probs=63.2
Q ss_pred CCCcceeeCCEEEEE-eCCeEEEEECCCCCceeeEEee----c---CCCCC--ceEEEeccCCCeEEE-EeccC--CCCC
Q psy74 9 ERPAYTVHNNVMYYV-KERFLHRLDLTNSKDSVVMQLR----G---GGRIP--AHSISYNATEHSILV-TTRNA--NNFE 75 (134)
Q Consensus 9 ERPa~~~~~n~L~Yv-kek~l~~~D~~t~~~~~~~slr----g---~~~~~--~~slsyNpae~~vLv-~~~~~--~~~d 75 (134)
+||+|.--++.++|| .|..|+..|+....-.....+. + ..|.| ..-+.++|..+-+.| +.... +-.+
T Consensus 197 ~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~ 276 (352)
T TIGR02658 197 NHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKT 276 (352)
T ss_pred cCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccC
Confidence 899997768899999 9999999998763322222221 1 13443 123999988776666 42210 0012
Q ss_pred C-ceEEEEEccCCCcccccccCCccccceeEEEEeCC---eEEEEec-CCEEEEEeCC
Q psy74 76 N-STYDLYMIPKEESERKEVADGKRSTGISAVWVARN---RFAVLDR-NHTILIKNLK 128 (134)
Q Consensus 76 ~-g~yeL~~lpk~~~~~~~~~~~~~g~g~~AvFVaRN---RfAvldk-~~~i~Iknl~ 128 (134)
+ .....+..... ... ....-|...-++-+++. ++.+.+. ++.|.|-|..
T Consensus 277 ~~~~V~ViD~~t~---kvi-~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~ 330 (352)
T TIGR02658 277 ASRFLFVVDAKTG---KRL-RKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAE 330 (352)
T ss_pred CCCEEEEEECCCC---eEE-EEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECc
Confidence 2 23333322111 000 11112344445666663 5556665 7778888874
No 32
>KOG0263|consensus
Probab=57.51 E-value=1.6e+02 Score=27.96 Aligned_cols=104 Identities=13% Similarity=0.242 Sum_probs=67.5
Q ss_pred ceeeCCEEEEE---eCCeEEEEECCCCCceeeEEeecCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEccCCCc
Q psy74 13 YTVHNNVMYYV---KERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEES 89 (134)
Q Consensus 13 ~~~~~n~L~Yv---kek~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lpk~~~ 89 (134)
.++|-|.-|=- -|+.+|+||..++..+-++ .+...+..+|.|.|-- --|. ++ .+.|..-+..++...-
T Consensus 541 v~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF---~GH~~~V~al~~Sp~G-r~La-Sg----~ed~~I~iWDl~~~~~ 611 (707)
T KOG0263|consen 541 VSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIF---TGHKGPVTALAFSPCG-RYLA-SG----DEDGLIKIWDLANGSL 611 (707)
T ss_pred EEECCcccccccCCCCceEEEEEcCCCcEEEEe---cCCCCceEEEEEcCCC-ceEe-ec----ccCCcEEEEEcCCCcc
Confidence 45566644332 7899999999886653333 2366688999999932 2333 33 3556777777765422
Q ss_pred -ccccccCCccccceeEEEEeCCeEEEEec-CCEEEEEeCC
Q psy74 90 -ERKEVADGKRSTGISAVWVARNRFAVLDR-NHTILIKNLK 128 (134)
Q Consensus 90 -~~~~~~~~~~g~g~~AvFVaRNRfAvldk-~~~i~Iknl~ 128 (134)
.. =-+++|.+.+--|==++-..|... ++++.+-|+.
T Consensus 612 v~~---l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~ 649 (707)
T KOG0263|consen 612 VKQ---LKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLT 649 (707)
T ss_pred hhh---hhcccCceeEEEEecCCCEEEecCCCCeEEEEEch
Confidence 11 124477788888877777777777 7778777764
No 33
>KOG0270|consensus
Probab=56.28 E-value=58 Score=29.22 Aligned_cols=76 Identities=18% Similarity=0.287 Sum_probs=56.8
Q ss_pred cCCCCcceeeCCEEEEE--eCCeEEEEECCCCCceeeEEeecCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEc
Q psy74 7 ERERPAYTVHNNVMYYV--KERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMI 84 (134)
Q Consensus 7 eRERPa~~~~~n~L~Yv--kek~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~l 84 (134)
+=||-+++-|.-..|++ .+..||.||+.... .|+-+++. +-.+...|+||+.-...|++.. ..++-.|-.+
T Consensus 331 ~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~-~~vwt~~A-Hd~~ISgl~~n~~~p~~l~t~s-----~d~~Vklw~~ 403 (463)
T KOG0270|consen 331 EVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPG-KPVWTLKA-HDDEISGLSVNIQTPGLLSTAS-----TDKVVKLWKF 403 (463)
T ss_pred ceEEEEecCCCceeEEEecCCceEEeeecCCCC-CceeEEEe-ccCCcceEEecCCCCcceeecc-----ccceEEEEee
Confidence 45888888888888888 78999999998732 78888881 1116789999999888888744 3347777777
Q ss_pred cCCCc
Q psy74 85 PKEES 89 (134)
Q Consensus 85 pk~~~ 89 (134)
+-+..
T Consensus 404 ~~~~~ 408 (463)
T KOG0270|consen 404 DVDSP 408 (463)
T ss_pred cCCCC
Confidence 76533
No 34
>PRK00178 tolB translocation protein TolB; Provisional
Probab=54.30 E-value=1.3e+02 Score=25.22 Aligned_cols=66 Identities=14% Similarity=0.219 Sum_probs=40.3
Q ss_pred CcceeeCCEEEEEe--CC--eEEEEECCCCCceeeEEeecCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEcc
Q psy74 11 PAYTVHNNVMYYVK--ER--FLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIP 85 (134)
Q Consensus 11 Pa~~~~~n~L~Yvk--ek--~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lp 85 (134)
|+|.-.++.|+|.. +. .|+.+|+.++.-..+..-.+ ...+.++.|....+++++. .+|..+||.+.
T Consensus 248 ~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~----~~~~~~~spDg~~i~f~s~-----~~g~~~iy~~d 317 (430)
T PRK00178 248 PAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTNHPA----IDTEPFWGKDGRTLYFTSD-----RGGKPQIYKVN 317 (430)
T ss_pred eEECCCCCEEEEEEccCCCceEEEEECCCCCeEEcccCCC----CcCCeEECCCCCEEEEEEC-----CCCCceEEEEE
Confidence 56666778898873 22 69999998754333221111 2344578888777777754 33456777654
No 35
>PRK04922 tolB translocation protein TolB; Provisional
Probab=54.26 E-value=1.4e+02 Score=25.43 Aligned_cols=66 Identities=18% Similarity=0.365 Sum_probs=41.8
Q ss_pred CcceeeCCEEEEEe----CCeEEEEECCCCCceeeEEeecCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEcc
Q psy74 11 PAYTVHNNVMYYVK----ERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIP 85 (134)
Q Consensus 11 Pa~~~~~n~L~Yvk----ek~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lp 85 (134)
|+++-.++.|+|+. ..+|+.+|+.++....+....|. .....+.|...-+++... .+|..+|+.+.
T Consensus 209 p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~----~~~~~~SpDG~~l~~~~s-----~~g~~~Iy~~d 278 (433)
T PRK04922 209 PAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGI----NGAPSFSPDGRRLALTLS-----RDGNPEIYVMD 278 (433)
T ss_pred ccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCC----ccCceECCCCCEEEEEEe-----CCCCceEEEEE
Confidence 66667788899983 24699999988665555444432 234577787776665533 22345676654
No 36
>KOG0279|consensus
Probab=52.28 E-value=1.5e+02 Score=25.36 Aligned_cols=103 Identities=17% Similarity=0.199 Sum_probs=56.6
Q ss_pred CCEEEEE-eCCeEEEEECCCCCceeeEEeecCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEccCCCccccccc
Q psy74 17 NNVMYYV-KERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEESERKEVA 95 (134)
Q Consensus 17 ~n~L~Yv-kek~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lpk~~~~~~~~~ 95 (134)
+++.+=. +|+.||+||+.++ .+...+.|..+ -.-+++++|.+..|+--++ |. +..|...-.+..-.. ..
T Consensus 75 g~~alS~swD~~lrlWDl~~g--~~t~~f~GH~~-dVlsva~s~dn~qivSGSr-----Dk-Tiklwnt~g~ck~t~-~~ 144 (315)
T KOG0279|consen 75 GNFALSASWDGTLRLWDLATG--ESTRRFVGHTK-DVLSVAFSTDNRQIVSGSR-----DK-TIKLWNTLGVCKYTI-HE 144 (315)
T ss_pred CceEEeccccceEEEEEecCC--cEEEEEEecCC-ceEEEEecCCCceeecCCC-----cc-eeeeeeecccEEEEE-ec
Confidence 3444444 9999999999986 44455555322 3567788876665554433 32 233332111111000 01
Q ss_pred CCccccceeEEEEeC--CeEEEEec-CCEEEEEeCCC
Q psy74 96 DGKRSTGISAVWVAR--NRFAVLDR-NHTILIKNLKN 129 (134)
Q Consensus 96 ~~~~g~g~~AvFVaR--NRfAvldk-~~~i~Iknl~n 129 (134)
+..++=-+...|+-+ |-+.+--. +.++.|=||+|
T Consensus 145 ~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~ 181 (315)
T KOG0279|consen 145 DSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRN 181 (315)
T ss_pred CCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCC
Confidence 222555566777777 44444444 77888888876
No 37
>KOG1036|consensus
Probab=51.81 E-value=1.6e+02 Score=25.40 Aligned_cols=68 Identities=18% Similarity=0.272 Sum_probs=42.0
Q ss_pred CCceEEEeccCCCeEEEEeccCCCCCCceEEEEEccCC--CcccccccCCccccceeEEEEeCCeEEEEecCCEEEEEeC
Q psy74 50 IPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKE--ESERKEVADGKRSTGISAVWVARNRFAVLDRNHTILIKNL 127 (134)
Q Consensus 50 ~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lpk~--~~~~~~~~~~~~g~g~~AvFVaRNRfAvldk~~~i~Iknl 127 (134)
-+.+-|.|++..+.|+-.+= | ++.++.. |+. ..+..+++ .-..+.=+.-||++|=-.+..+.|.||
T Consensus 95 ~~i~ci~~~~~~~~vIsgsW-----D-~~ik~wD-~R~~~~~~~~d~~-----kkVy~~~v~g~~LvVg~~~r~v~iyDL 162 (323)
T KOG1036|consen 95 EGIRCIEYSYEVGCVISGSW-----D-KTIKFWD-PRNKVVVGTFDQG-----KKVYCMDVSGNRLVVGTSDRKVLIYDL 162 (323)
T ss_pred CceEEEEeeccCCeEEEccc-----C-ccEEEEe-ccccccccccccC-----ceEEEEeccCCEEEEeecCceEEEEEc
Confidence 35688888888877765422 2 3566653 222 11222221 145566688999999777778999888
Q ss_pred CC
Q psy74 128 KN 129 (134)
Q Consensus 128 ~n 129 (134)
.|
T Consensus 163 Rn 164 (323)
T KOG1036|consen 163 RN 164 (323)
T ss_pred cc
Confidence 54
No 38
>PF14157 YmzC: YmzC-like protein; PDB: 3KVP_E.
Probab=51.74 E-value=18 Score=23.95 Aligned_cols=28 Identities=25% Similarity=0.315 Sum_probs=20.3
Q ss_pred cceeEEEEeCCeEEEEecCCEEEEEeCC
Q psy74 101 TGISAVWVARNRFAVLDRNHTILIKNLK 128 (134)
Q Consensus 101 ~g~~AvFVaRNRfAvldk~~~i~Iknl~ 128 (134)
.-.+++=++-|.||+++..++|-|.-.+
T Consensus 20 ~ts~m~ql~~N~Fav~~e~~~iKIfkyd 47 (63)
T PF14157_consen 20 NTSNMTQLEHNHFAVVDEDGQIKIFKYD 47 (63)
T ss_dssp --EEEEE-STTEEEEE-ETTEEEEEEEE
T ss_pred CcCceEEecCCEEEEEecCCeEEEEEeC
Confidence 3456888999999999888899887663
No 39
>KOG3545|consensus
Probab=51.50 E-value=25 Score=29.13 Aligned_cols=43 Identities=16% Similarity=0.142 Sum_probs=31.5
Q ss_pred eCCeE-EEEECCCCCceeeEEee-cCCCCCceEEEeccCCCeEEEE
Q psy74 24 KERFL-HRLDLTNSKDSVVMQLR-GGGRIPAHSISYNATEHSILVT 67 (134)
Q Consensus 24 kek~l-~~~D~~t~~~~~~~slr-g~~~~~~~slsyNpae~~vLv~ 67 (134)
.+++| +.||..++.+ ...+|- .+++.-...|.|||-|+.+-++
T Consensus 191 ~~~~i~yaydt~~~~~-~~~~ipf~N~y~~~~~idYNP~D~~LY~w 235 (249)
T KOG3545|consen 191 THTQISYAYDTTTGTQ-ERIDLPFPNPYSYATMIDYNPRDRRLYAW 235 (249)
T ss_pred CCceEEEEEEcCCCce-ecccccccchhhhhhccCCCcccceeeEe
Confidence 56777 7899998666 223333 5566667789999999988887
No 40
>PRK05137 tolB translocation protein TolB; Provisional
Probab=49.25 E-value=1.6e+02 Score=24.91 Aligned_cols=69 Identities=14% Similarity=0.258 Sum_probs=41.4
Q ss_pred CCcceeeCCEEEEEe--C--CeEEEEECCCCCceeeEEeecCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEcc
Q psy74 10 RPAYTVHNNVMYYVK--E--RFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIP 85 (134)
Q Consensus 10 RPa~~~~~n~L~Yvk--e--k~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lp 85 (134)
-|+|.-.+..|+|.. + .+|+.+|+.++.-. .|... .......++.|...-+++.+. .+|..+|+.+.
T Consensus 250 ~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~---~Lt~~-~~~~~~~~~spDG~~i~f~s~-----~~g~~~Iy~~d 320 (435)
T PRK05137 250 APRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT---RLTDS-PAIDTSPSYSPDGSQIVFESD-----RSGSPQLYVMN 320 (435)
T ss_pred CcEECCCCCEEEEEEecCCCceEEEEECCCCceE---EccCC-CCccCceeEcCCCCEEEEEEC-----CCCCCeEEEEE
Confidence 355666677888873 2 45888898875432 23311 112345688888877777654 34456777765
Q ss_pred CC
Q psy74 86 KE 87 (134)
Q Consensus 86 k~ 87 (134)
-+
T Consensus 321 ~~ 322 (435)
T PRK05137 321 AD 322 (435)
T ss_pred CC
Confidence 43
No 41
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=48.39 E-value=1.4e+02 Score=24.01 Aligned_cols=114 Identities=18% Similarity=0.137 Sum_probs=61.4
Q ss_pred EecCCCCccee--eCCEEEEEeCCeEEEEECCCCC-ceeeEEeecCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEE
Q psy74 5 KFERERPAYTV--HNNVMYYVKERFLHRLDLTNSK-DSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDL 81 (134)
Q Consensus 5 KLeRERPa~~~--~~n~L~Yvkek~l~~~D~~t~~-~~~~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL 81 (134)
+.+=+-|.+++ .++.|...-.+.|++|++...+ =.+.+.... +....+....++-|+|... .++ .-+
T Consensus 84 ~~~~~g~V~ai~~~~~~lv~~~g~~l~v~~l~~~~~l~~~~~~~~----~~~i~sl~~~~~~I~vgD~----~~s--v~~ 153 (321)
T PF03178_consen 84 STEVKGPVTAICSFNGRLVVAVGNKLYVYDLDNSKTLLKKAFYDS----PFYITSLSVFKNYILVGDA----MKS--VSL 153 (321)
T ss_dssp EEEESS-EEEEEEETTEEEEEETTEEEEEEEETTSSEEEEEEE-B----SSSEEEEEEETTEEEEEES----SSS--EEE
T ss_pred EEeecCcceEhhhhCCEEEEeecCEEEEEEccCcccchhhheecc----eEEEEEEeccccEEEEEEc----ccC--EEE
Confidence 33445565555 5677777799999999999866 344444442 2233444444555555422 121 222
Q ss_pred EEccCCCccc-ccccCCccccceeEEEE-eCCeEEEEecCCEEEEEeCC
Q psy74 82 YMIPKEESER-KEVADGKRSTGISAVWV-ARNRFAVLDRNHTILIKNLK 128 (134)
Q Consensus 82 ~~lpk~~~~~-~~~~~~~~g~g~~AvFV-aRNRfAvldk~~~i~Iknl~ 128 (134)
+.+-.+...- .-..+...-.+.++.|+ ..+.+++-|+.++|.+-..+
T Consensus 154 ~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 154 LRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred EEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 2222211100 00112223347888999 55799999999888775554
No 42
>PRK01029 tolB translocation protein TolB; Provisional
Probab=48.04 E-value=1.1e+02 Score=26.42 Aligned_cols=69 Identities=16% Similarity=0.255 Sum_probs=44.4
Q ss_pred CCcceeeCCEEEEEeC----CeEEEEECCCCCceeeEEeecCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEcc
Q psy74 10 RPAYTVHNNVMYYVKE----RFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIP 85 (134)
Q Consensus 10 RPa~~~~~n~L~Yvke----k~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lp 85 (134)
-|++.-.+..|.|+.. .+|+.||+.++....+.. +. ....+.++.|....++++.. ++|..+|+.+.
T Consensus 331 ~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~--~~--~~~~~p~wSpDG~~L~f~~~-----~~g~~~L~~vd 401 (428)
T PRK01029 331 CPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT--SP--ENKESPSWAIDSLHLVYSAG-----NSNESELYLIS 401 (428)
T ss_pred ceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC--CC--CCccceEECCCCCEEEEEEC-----CCCCceEEEEE
Confidence 3666677888999843 479999998865433321 21 12345677787777777644 44567888766
Q ss_pred CC
Q psy74 86 KE 87 (134)
Q Consensus 86 k~ 87 (134)
-+
T Consensus 402 l~ 403 (428)
T PRK01029 402 LI 403 (428)
T ss_pred CC
Confidence 44
No 43
>PTZ00421 coronin; Provisional
Probab=47.87 E-value=2e+02 Score=25.55 Aligned_cols=102 Identities=9% Similarity=0.226 Sum_probs=59.6
Q ss_pred EEEEE-eCCeEEEEECCCCC-----ceeeEEeecCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEccCCCcccc
Q psy74 19 VMYYV-KERFLHRLDLTNSK-----DSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEESERK 92 (134)
Q Consensus 19 ~L~Yv-kek~l~~~D~~t~~-----~~~~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lpk~~~~~~ 92 (134)
.|.-. .|..|+.||+.+.. ..++..+.|. -.....|.++|....+|++.. ..|+..+..+-.... .
T Consensus 90 ~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH-~~~V~~l~f~P~~~~iLaSgs-----~DgtVrIWDl~tg~~--~ 161 (493)
T PTZ00421 90 KLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGH-TKKVGIVSFHPSAMNVLASAG-----ADMVVNVWDVERGKA--V 161 (493)
T ss_pred EEEEEeCCCEEEEEecCCCccccccCcceEEecCC-CCcEEEEEeCcCCCCEEEEEe-----CCCEEEEEECCCCeE--E
Confidence 34444 89999999998632 2356667653 235788999998766666644 334666665543211 0
Q ss_pred cccCCccccceeEEEEe-CCeEEEEecCCEEEEEeCC
Q psy74 93 EVADGKRSTGISAVWVA-RNRFAVLDRNHTILIKNLK 128 (134)
Q Consensus 93 ~~~~~~~g~g~~AvFVa-RNRfAvldk~~~i~Iknl~ 128 (134)
..-....+...+..|-. -+.+|.-..+++|.|-|+.
T Consensus 162 ~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~r 198 (493)
T PTZ00421 162 EVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPR 198 (493)
T ss_pred EEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECC
Confidence 01112233334455543 2346666668888888875
No 44
>KOG0302|consensus
Probab=47.85 E-value=2e+02 Score=25.60 Aligned_cols=102 Identities=15% Similarity=0.198 Sum_probs=64.9
Q ss_pred CEEEEE-eCCeEEEEECCCCCceeeEEee--cCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEccCCCccccc-
Q psy74 18 NVMYYV-KERFLHRLDLTNSKDSVVMQLR--GGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEESERKE- 93 (134)
Q Consensus 18 n~L~Yv-kek~l~~~D~~t~~~~~~~slr--g~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lpk~~~~~~~- 93 (134)
+.++=+ .|..||.||+..+...+-++.+ ++ -..-||+|--+. |+.++ .|+|+..+-.|-.-..+.+-
T Consensus 271 ~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~s---DVNVISWnr~~~--lLasG----~DdGt~~iwDLR~~~~~~pVA 341 (440)
T KOG0302|consen 271 GVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNS---DVNVISWNRREP--LLASG----GDDGTLSIWDLRQFKSGQPVA 341 (440)
T ss_pred ceEEeeecCceEEEEEecCCCccceeEeeccCC---ceeeEEccCCcc--eeeec----CCCceEEEEEhhhccCCCcce
Confidence 434445 9999999999997666666667 22 466799998888 55556 59999999877655444332
Q ss_pred ccCCccccceeEEEEe--CCeEEEEecCCEEEEEeCC
Q psy74 94 VADGKRSTGISAVWVA--RNRFAVLDRNHTILIKNLK 128 (134)
Q Consensus 94 ~~~~~~g~g~~AvFVa--RNRfAvldk~~~i~Iknl~ 128 (134)
.-.-+++.-.+.-|=. ---||+--..+||.|=||.
T Consensus 342 ~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDls 378 (440)
T KOG0302|consen 342 TFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLS 378 (440)
T ss_pred eEEeccCCeeEEEeccccCceEEeccCCCcEEEEEee
Confidence 1233444334444431 1235555557788888874
No 45
>PRK03629 tolB translocation protein TolB; Provisional
Probab=47.80 E-value=1.8e+02 Score=24.88 Aligned_cols=66 Identities=15% Similarity=0.265 Sum_probs=42.2
Q ss_pred CcceeeCCEEEEEe----CCeEEEEECCCCCceeeEEeecCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEcc
Q psy74 11 PAYTVHNNVMYYVK----ERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIP 85 (134)
Q Consensus 11 Pa~~~~~n~L~Yvk----ek~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lp 85 (134)
|++.-.|..|.|+. +.+|+.+|+.++....+.+.+|. .....+.|....+++... ..|..+|+.+.
T Consensus 204 p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~----~~~~~~SPDG~~La~~~~-----~~g~~~I~~~d 273 (429)
T PRK03629 204 PAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRH----NGAPAFSPDGSKLAFALS-----KTGSLNLYVMD 273 (429)
T ss_pred eEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCC----cCCeEECCCCCEEEEEEc-----CCCCcEEEEEE
Confidence 67777888899972 35799999988665555555532 124577787776666533 23345566554
No 46
>PF03478 DUF295: Protein of unknown function (DUF295); InterPro: IPR005174 This family of proteins are found in plants. The function of the proteins is unknown.
Probab=46.81 E-value=26 Score=21.46 Aligned_cols=19 Identities=16% Similarity=0.555 Sum_probs=15.5
Q ss_pred eeCCEEEEEeC------CeEEEEEC
Q psy74 15 VHNNVMYYVKE------RFLHRLDL 33 (134)
Q Consensus 15 ~~~n~L~Yvke------k~l~~~D~ 33 (134)
+.+|.+||..+ +.+.+||+
T Consensus 30 ~~~n~IYf~~~~~~~~~~~~~Vy~m 54 (54)
T PF03478_consen 30 LKGNCIYFLDDSSDESDRDIGVYNM 54 (54)
T ss_pred ccCCEEEEecCCCCCCCCCEEEEeC
Confidence 67899999988 77777775
No 47
>PTZ00421 coronin; Provisional
Probab=46.29 E-value=2.1e+02 Score=25.39 Aligned_cols=108 Identities=13% Similarity=0.145 Sum_probs=55.6
Q ss_pred CCEEEEE-eCCeEEEEECCCCCceeeEEeecCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEccCCCccccccc
Q psy74 17 NNVMYYV-KERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEESERKEVA 95 (134)
Q Consensus 17 ~n~L~Yv-kek~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lpk~~~~~~~~~ 95 (134)
++.|.-. +|+.|+.||+.+.+ .+.++.+..-.......+.|....++.+.. +....+...|+.+.+.... ....
T Consensus 180 G~lLatgs~Dg~IrIwD~rsg~--~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~--s~s~Dr~VklWDlr~~~~p-~~~~ 254 (493)
T PTZ00421 180 GSLLCTTSKDKKLNIIDPRDGT--IVSSVEAHASAKSQRCLWAKRKDLIITLGC--SKSQQRQIMLWDTRKMASP-YSTV 254 (493)
T ss_pred CCEEEEecCCCEEEEEECCCCc--EEEEEecCCCCcceEEEEcCCCCeEEEEec--CCCCCCeEEEEeCCCCCCc-eeEe
Confidence 4445555 89999999998754 344454221111224556666655544322 1123457777765433210 0001
Q ss_pred CCccccceeEEEEeC--CeEEEEec-CCEEEEEeCCC
Q psy74 96 DGKRSTGISAVWVAR--NRFAVLDR-NHTILIKNLKN 129 (134)
Q Consensus 96 ~~~~g~g~~AvFVaR--NRfAvldk-~~~i~Iknl~n 129 (134)
+.....+....|+.. |.+++--+ +++|.+.++.+
T Consensus 255 ~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~ 291 (493)
T PTZ00421 255 DLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMN 291 (493)
T ss_pred ccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeC
Confidence 111123455555543 44444445 78898888864
No 48
>KOG2110|consensus
Probab=45.20 E-value=1.9e+02 Score=25.48 Aligned_cols=66 Identities=11% Similarity=0.243 Sum_probs=46.0
Q ss_pred eCCEEEEE--eCCeEEEEECCCCCceeeEEee-cCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEccCCCc
Q psy74 16 HNNVMYYV--KERFLHRLDLTNSKDSVVMQLR-GGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEES 89 (134)
Q Consensus 16 ~~n~L~Yv--kek~l~~~D~~t~~~~~~~slr-g~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lpk~~~ 89 (134)
.|..|-=- |...||+|...+ -.-+.+.| |..-...++|++.|...-+..+ .+.++-+++.|.+...
T Consensus 184 ~G~llATASeKGTVIRVf~v~~--G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~s------S~TeTVHiFKL~~~~~ 252 (391)
T KOG2110|consen 184 DGTLLATASEKGTVIRVFSVPE--GQKLYEFRRGTYPVSIYSLSFSPDSQFLAAS------SNTETVHIFKLEKVSN 252 (391)
T ss_pred CCCEEEEeccCceEEEEEEcCC--ccEeeeeeCCceeeEEEEEEECCCCCeEEEe------cCCCeEEEEEeccccc
Confidence 34444444 667799998754 33567888 8776778999999998844444 3566888888776643
No 49
>KOG4499|consensus
Probab=45.01 E-value=15 Score=30.86 Aligned_cols=28 Identities=29% Similarity=0.585 Sum_probs=23.9
Q ss_pred CCCcceeeCCEEEEE--eCCeEEEEECCCC
Q psy74 9 ERPAYTVHNNVMYYV--KERFLHRLDLTNS 36 (134)
Q Consensus 9 ERPa~~~~~n~L~Yv--kek~l~~~D~~t~ 36 (134)
|-|-|++..+.|||| --+.++.||+.++
T Consensus 18 Egp~w~~~~~sLl~VDi~ag~v~r~D~~qn 47 (310)
T KOG4499|consen 18 EGPHWDVERQSLLYVDIEAGEVHRYDIEQN 47 (310)
T ss_pred CCCceEEecceEEEEEeccCceehhhhhhh
Confidence 788899999999998 5667888999884
No 50
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=43.99 E-value=1.4e+02 Score=22.46 Aligned_cols=106 Identities=5% Similarity=0.022 Sum_probs=54.0
Q ss_pred eCCEEEEE--eCCeEEEEECCCCCceeeEEee--c--CCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEccCCCc
Q psy74 16 HNNVMYYV--KERFLHRLDLTNSKDSVVMQLR--G--GGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEES 89 (134)
Q Consensus 16 ~~n~L~Yv--kek~l~~~D~~t~~~~~~~slr--g--~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lpk~~~ 89 (134)
.+..|+.. .+..++.||+.+.+...-+... + .....+..+.++|....+++... .+ +...++.+- +
T Consensus 167 dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~----~~-~~i~v~d~~---~ 238 (300)
T TIGR03866 167 DGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALG----PA-NRVAVVDAK---T 238 (300)
T ss_pred CCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcC----CC-CeEEEEECC---C
Confidence 44445554 4788999999985433323322 1 12234567889999887776544 22 234444321 1
Q ss_pred ccccccCCccccceeEEEEeCCeEEEE-ec-CCEEEEEeCCC
Q psy74 90 ERKEVADGKRSTGISAVWVARNRFAVL-DR-NHTILIKNLKN 129 (134)
Q Consensus 90 ~~~~~~~~~~g~g~~AvFVaRNRfAvl-dk-~~~i~Iknl~n 129 (134)
+.........+...+..|-.-+++.+. .. +++|.|-|++.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~ 280 (300)
T TIGR03866 239 YEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAA 280 (300)
T ss_pred CcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCC
Confidence 111000000111223445445555444 34 67888888853
No 51
>PF03117 Herpes_UL49_1: UL49 family; InterPro: IPR004339 UL49 proteins are present in the viral tegument at the surface of the nucleocapsid []. Many of the nonconserved tegument proteins of alpha-herpes viruses play important roles during different steps of the viral replication cycle, such as the shutoff of host cell functions by the vhs protein encoded by UL41 and the transcriptional activation of viral immediate-early genes by the UL48 gene product, VP16. UL49 of Human herpesvirus 1 (HHV-1) has been shown to directly interact with VP16. The UL49 gene products of HHV-1 and Bovine herpesvirus 1 exhibit virus-independent intercellular trafficking of unknown biological function but are dispensable for productive viral replication. Envelope glycoprotein M (gM) and the complex formed by glycoproteins E (gE) and I (gI) are involved in the secondary envelopment of Suid herpesvirus 1 (Pseudorabies virus, PrV) particles in the cytoplasm of infected cells. In the absence of the gE-gI complex and gM, envelopment is blocked and capsids surrounded by tegument proteins accumulate in the cytoplasm. The cytoplasmic domains of gE and gM specifically interact with the C-terminal part of the UL49 gene product of PrV suggesting a role for the protein in secondary envelopment during herpesvirus virion maturation [].; GO: 0016032 viral reproduction, 0019033 viral tegument
Probab=42.93 E-value=29 Score=28.66 Aligned_cols=38 Identities=13% Similarity=0.271 Sum_probs=30.7
Q ss_pred ceeeCCEEEEEeCCeEEEEECCCCCceeeEEeecCCCC
Q psy74 13 YTVHNNVMYYVKERFLHRLDLTNSKDSVVMQLRGGGRI 50 (134)
Q Consensus 13 ~~~~~n~L~Yvkek~l~~~D~~t~~~~~~~slrg~~~~ 50 (134)
+.+.-+.+||.+|++-....+-+..+...+|+=|++..
T Consensus 126 ~~F~pts~FY~RDqkEK~v~~c~~tgriyCS~CGS~~l 163 (245)
T PF03117_consen 126 QNFPPTSMFYYRDQKEKQVIYCATTGRIYCSLCGSQRL 163 (245)
T ss_pred cCcCCcceeEeccccceeEEEeccCCCEEEccCCCCee
Confidence 44555778999999999999998899999998876554
No 52
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=42.44 E-value=46 Score=18.06 Aligned_cols=25 Identities=12% Similarity=0.145 Sum_probs=19.5
Q ss_pred CcceeeCCEEEEE--eCCeEEEEECCC
Q psy74 11 PAYTVHNNVMYYV--KERFLHRLDLTN 35 (134)
Q Consensus 11 Pa~~~~~n~L~Yv--kek~l~~~D~~t 35 (134)
+|++..++.|||+ ....|+..++..
T Consensus 14 la~d~~~~~lYw~D~~~~~I~~~~~~g 40 (43)
T smart00135 14 LAVDWIEGRLYWTDWGLDVIEVANLDG 40 (43)
T ss_pred EEEeecCCEEEEEeCCCCEEEEEeCCC
Confidence 3677788899998 566788888865
No 53
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=42.14 E-value=1.9e+02 Score=23.72 Aligned_cols=117 Identities=12% Similarity=0.197 Sum_probs=67.5
Q ss_pred CCCcceee--CCEEEEE-eCC-----eEEEEECCCC-CceeeEEeecCCCCCceEEEeccCCCeEEEEeccCCCCCCceE
Q psy74 9 ERPAYTVH--NNVMYYV-KER-----FLHRLDLTNS-KDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTY 79 (134)
Q Consensus 9 ERPa~~~~--~n~L~Yv-kek-----~l~~~D~~t~-~~~~~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~y 79 (134)
+.|.|-.. ++.+.|+ .|. .|..|++... .....+.-....-..|-.|+++|....+++..- .+|+.
T Consensus 37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany-----~~g~v 111 (345)
T PF10282_consen 37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANY-----GGGSV 111 (345)
T ss_dssp SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEET-----TTTEE
T ss_pred CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEc-----cCCeE
Confidence 44555443 4445565 553 7999998874 333332222111226788999999998888643 56788
Q ss_pred EEEEccCCCc-cccc--------cc--CCcc-ccceeEEEEeCCe-EEEEec-CCEEEEEeCCCc
Q psy74 80 DLYMIPKEES-ERKE--------VA--DGKR-STGISAVWVARNR-FAVLDR-NHTILIKNLKNE 130 (134)
Q Consensus 80 eL~~lpk~~~-~~~~--------~~--~~~~-g~g~~AvFVaRNR-fAvldk-~~~i~Iknl~n~ 130 (134)
.++.|..+.. +... .+ +.+. ...+.+.|--..| +.|-|. ...|.+.+++.+
T Consensus 112 ~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~ 176 (345)
T PF10282_consen 112 SVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDD 176 (345)
T ss_dssp EEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TT
T ss_pred EEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCC
Confidence 8887776532 2110 01 1222 2456667765555 445576 788999998643
No 54
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=41.85 E-value=51 Score=18.52 Aligned_cols=23 Identities=22% Similarity=0.164 Sum_probs=17.5
Q ss_pred ceeeCCEEEEE-eCCeEEEEECCC
Q psy74 13 YTVHNNVMYYV-KERFLHRLDLTN 35 (134)
Q Consensus 13 ~~~~~n~L~Yv-kek~l~~~D~~t 35 (134)
-++.++.||.. .+.+|+.+|..|
T Consensus 17 ~~v~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 17 PAVAGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp -EECTSEEEEE-TTSEEEEEETT-
T ss_pred CEEECCEEEEEcCCCEEEEEeCCC
Confidence 36678888887 789999999764
No 55
>KOG2111|consensus
Probab=41.71 E-value=1.2e+02 Score=26.33 Aligned_cols=55 Identities=16% Similarity=0.359 Sum_probs=43.7
Q ss_pred eCCeEEEEECCCCCceeeEEee-cCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEccC
Q psy74 24 KERFLHRLDLTNSKDSVVMQLR-GGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPK 86 (134)
Q Consensus 24 kek~l~~~D~~t~~~~~~~slr-g~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lpk 86 (134)
|.--||.||-.+ -..+..+| |......+.|+++|...-+.|. .|.|+-.++.|--
T Consensus 202 kGTLIRIFdt~~--g~~l~E~RRG~d~A~iy~iaFSp~~s~Lavs------SdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 202 KGTLIRIFDTED--GTLLQELRRGVDRADIYCIAFSPNSSWLAVS------SDKGTLHIFSLRD 257 (346)
T ss_pred CcEEEEEEEcCC--CcEeeeeecCCchheEEEEEeCCCccEEEEE------cCCCeEEEEEeec
Confidence 556689998665 45778899 9888889999999998888777 5678888887643
No 56
>PF06979 DUF1301: Protein of unknown function (DUF1301); InterPro: IPR009724 This family contains a number of eukaryotic proteins of unknown function that are approximately 160 residues long.
Probab=40.34 E-value=1.2e+02 Score=22.66 Aligned_cols=54 Identities=17% Similarity=0.302 Sum_probs=36.8
Q ss_pred ceEEEeccCCCeEEEEeccCCCCCCceEEEEEccCCCc---ccccccCCccccceeEEEEeCCeEEEEec
Q psy74 52 AHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEES---ERKEVADGKRSTGISAVWVARNRFAVLDR 118 (134)
Q Consensus 52 ~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lpk~~~---~~~~~~~~~~g~g~~AvFVaRNRfAvldk 118 (134)
+..|.|||.+...-.. +|.++.-++... +++..+| ..+..+.|.|++|.-.+|.
T Consensus 60 V~~ly~~~~~d~yta~----------T~s~~~~~~~~~F~~~DV~~P~---~~~~ftTF~a~~~~lfv~~ 116 (133)
T PF06979_consen 60 VIRLYYNPGTDTYTAE----------TYSFFLREKKTRFKPSDVKVPD---VPRMFTTFYAKGKPLFVDP 116 (133)
T ss_pred eeEEEEcCCCCEEEEE----------EEeeeeeeeeeEEEHhHeeCCC---CCCceEEEEECCEEEEEch
Confidence 3778999887744443 566666666544 3333333 3478899999999999986
No 57
>KOG0282|consensus
Probab=40.01 E-value=1.6e+02 Score=26.75 Aligned_cols=98 Identities=12% Similarity=0.142 Sum_probs=58.8
Q ss_pred CCEEEEE-eCCeEEEEECCCCCceeeEEeecCCCCCceEEEeccCC-CeEEEEeccCCCCCCceEEEEEccCCCcccccc
Q psy74 17 NNVMYYV-KERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATE-HSILVTTRNANNFENSTYDLYMIPKEESERKEV 94 (134)
Q Consensus 17 ~n~L~Yv-kek~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNpae-~~vLv~~~~~~~~d~g~yeL~~lpk~~~~~~~~ 94 (134)
+..++=+ .|++|+.||.+|+....-+.+. ..|.-+.++|.+ +.+|+- . .| +..-.+.+-.. .-...
T Consensus 270 g~~fLS~sfD~~lKlwDtETG~~~~~f~~~----~~~~cvkf~pd~~n~fl~G-~----sd-~ki~~wDiRs~--kvvqe 337 (503)
T KOG0282|consen 270 GTSFLSASFDRFLKLWDTETGQVLSRFHLD----KVPTCVKFHPDNQNIFLVG-G----SD-KKIRQWDIRSG--KVVQE 337 (503)
T ss_pred CCeeeeeecceeeeeeccccceEEEEEecC----CCceeeecCCCCCcEEEEe-c----CC-CcEEEEeccch--HHHHH
Confidence 3344445 8999999999997765555544 257889999999 555553 2 23 23333321111 00001
Q ss_pred cCCccccceeEEEEeCCeEEEEec-CCEEEEEe
Q psy74 95 ADGKRSTGISAVWVARNRFAVLDR-NHTILIKN 126 (134)
Q Consensus 95 ~~~~~g~g~~AvFVaRNRfAvldk-~~~i~Ikn 126 (134)
=+..-|.-++-.|+.-||--+... ..++.|=.
T Consensus 338 Yd~hLg~i~~i~F~~~g~rFissSDdks~riWe 370 (503)
T KOG0282|consen 338 YDRHLGAILDITFVDEGRRFISSSDDKSVRIWE 370 (503)
T ss_pred HHhhhhheeeeEEccCCceEeeeccCccEEEEE
Confidence 133445667788999998877776 56666644
No 58
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=39.87 E-value=2.1e+02 Score=23.49 Aligned_cols=100 Identities=11% Similarity=0.125 Sum_probs=55.6
Q ss_pred CeEEEEECCC-CCceeeEEeecCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEccCCCcccccccCCcccccee
Q psy74 26 RFLHRLDLTN-SKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEESERKEVADGKRSTGIS 104 (134)
Q Consensus 26 k~l~~~D~~t-~~~~~~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lpk~~~~~~~~~~~~~g~g~~ 104 (134)
+-|+.|+|.. ......++.- ..-..|.-|.++|..+.+-++... ..+.|...-|.+..+.. ...........|..
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~-~~~~~Ps~l~~~~~~~~LY~~~e~--~~~~g~v~~~~i~~~~g-~L~~~~~~~~~g~~ 88 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTV-AEGENPSWLAVSPDGRRLYVVNEG--SGDSGGVSSYRIDPDTG-TLTLLNSVPSGGSS 88 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEE-EESSSECCEEE-TTSSEEEEEETT--SSTTTEEEEEEEETTTT-EEEEEEEEEESSSC
T ss_pred CcEEEEEEcCCCCCceEeeee-cCCCCCceEEEEeCCCEEEEEEcc--ccCCCCEEEEEECCCcc-eeEEeeeeccCCCC
Confidence 6899999944 4444444432 112256778888987776666551 11456666666666521 11111111114566
Q ss_pred EEEEeC---CeEEEEec--CCEEEEEeCCC
Q psy74 105 AVWVAR---NRFAVLDR--NHTILIKNLKN 129 (134)
Q Consensus 105 AvFVaR---NRfAvldk--~~~i~Iknl~n 129 (134)
.|+++- .++++.-. +++|.+.+|+.
T Consensus 89 p~~i~~~~~g~~l~vany~~g~v~v~~l~~ 118 (345)
T PF10282_consen 89 PCHIAVDPDGRFLYVANYGGGSVSVFPLDD 118 (345)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred cEEEEEecCCCEEEEEEccCCeEEEEEccC
Confidence 667763 45555543 78899998864
No 59
>KOG2925|consensus
Probab=39.52 E-value=21 Score=27.77 Aligned_cols=15 Identities=33% Similarity=0.868 Sum_probs=13.6
Q ss_pred EEEEeCCeEEEEecC
Q psy74 105 AVWVARNRFAVLDRN 119 (134)
Q Consensus 105 AvFVaRNRfAvldk~ 119 (134)
.+||-|+-|+|+|+.
T Consensus 58 siWiRRg~FvvVdpi 72 (167)
T KOG2925|consen 58 SIWIRRGSFVVVDPI 72 (167)
T ss_pred ceEEeeCCEEEEccc
Confidence 699999999999974
No 60
>PRK04043 tolB translocation protein TolB; Provisional
Probab=39.36 E-value=2.5e+02 Score=24.21 Aligned_cols=67 Identities=16% Similarity=0.297 Sum_probs=42.5
Q ss_pred CcceeeCCE-EEEE-e---CCeEEEEECCCCCceeeEEeecCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEcc
Q psy74 11 PAYTVHNNV-MYYV-K---ERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIP 85 (134)
Q Consensus 11 Pa~~~~~n~-L~Yv-k---ek~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lp 85 (134)
|.+.-.++. +||+ . ..+|+.+|+.+++...+....|. ...-.+.|...-+++... .+|..+|+.+.
T Consensus 193 p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~----~~~~~~SPDG~~la~~~~-----~~g~~~Iy~~d 263 (419)
T PRK04043 193 PKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGM----LVVSDVSKDGSKLLLTMA-----PKGQPDIYLYD 263 (419)
T ss_pred EEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCc----EEeeEECCCCCEEEEEEc-----cCCCcEEEEEE
Confidence 566667775 7776 2 45799999998777666654432 122346787776666644 23456777665
Q ss_pred C
Q psy74 86 K 86 (134)
Q Consensus 86 k 86 (134)
-
T Consensus 264 l 264 (419)
T PRK04043 264 T 264 (419)
T ss_pred C
Confidence 3
No 61
>KOG0265|consensus
Probab=38.01 E-value=1.3e+02 Score=25.90 Aligned_cols=61 Identities=11% Similarity=0.105 Sum_probs=36.8
Q ss_pred eeeCCEEEEE-eCCeEEEEECCCCCceeeEEeecCCCCCceEEEeccCCC-eEEEEeccCCCCCCceEEEEE
Q psy74 14 TVHNNVMYYV-KERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEH-SILVTTRNANNFENSTYDLYM 83 (134)
Q Consensus 14 ~~~~n~L~Yv-kek~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNpae~-~vLv~~~~~~~~d~g~yeL~~ 83 (134)
.-+++.++=+ -||.|+.||.++++-.--+....+ ..-+..|... ..||+++ +|.|+..|+.
T Consensus 99 ~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~-----~vNs~~p~rrg~~lv~Sg----sdD~t~kl~D 161 (338)
T KOG0265|consen 99 MRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTS-----FVNSLDPSRRGPQLVCSG----SDDGTLKLWD 161 (338)
T ss_pred ccCCCEEEEecCCceEEEEecccceeeehhccccc-----eeeecCccccCCeEEEec----CCCceEEEEe
Confidence 3467788888 999999999998654332222210 1112226554 6788877 5665555543
No 62
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=37.74 E-value=64 Score=16.89 Aligned_cols=23 Identities=17% Similarity=0.287 Sum_probs=17.2
Q ss_pred eeCCEEEEE-eCCeEEEEECCCCC
Q psy74 15 VHNNVMYYV-KERFLHRLDLTNSK 37 (134)
Q Consensus 15 ~~~n~L~Yv-kek~l~~~D~~t~~ 37 (134)
..++.+|.. .+..|+.+|..+++
T Consensus 4 ~~~~~v~~~~~~g~l~a~d~~~G~ 27 (33)
T smart00564 4 LSDGTVYVGSTDGTLYALDAKTGE 27 (33)
T ss_pred EECCEEEEEcCCCEEEEEEcccCc
Confidence 455667776 78999999987643
No 63
>PRK01742 tolB translocation protein TolB; Provisional
Probab=37.54 E-value=1.8e+02 Score=24.67 Aligned_cols=67 Identities=13% Similarity=0.153 Sum_probs=41.7
Q ss_pred CcceeeCCEEEEEeCCeEEEEECCCCCceeeEEeecCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEccCC
Q psy74 11 PAYTVHNNVMYYVKERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKE 87 (134)
Q Consensus 11 Pa~~~~~n~L~Yvkek~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lpk~ 87 (134)
|++.-.+..|+|+....+..+|+.+..... +... + ...+.++.|....++..+. +++...|+.+..+
T Consensus 338 ~~~SpDG~~ia~~~~~~i~~~Dl~~g~~~~---lt~~-~-~~~~~~~sPdG~~i~~~s~-----~g~~~~l~~~~~~ 404 (429)
T PRK01742 338 AQISADGKTLVMINGDNVVKQDLTSGSTEV---LSST-F-LDESPSISPNGIMIIYSST-----QGLGKVLQLVSAD 404 (429)
T ss_pred ccCCCCCCEEEEEcCCCEEEEECCCCCeEE---ecCC-C-CCCCceECCCCCEEEEEEc-----CCCceEEEEEECC
Confidence 455556778888866677889998754332 2211 1 1245678898887777654 5666666655433
No 64
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=35.82 E-value=1.8e+02 Score=23.56 Aligned_cols=68 Identities=13% Similarity=0.306 Sum_probs=37.9
Q ss_pred CceEEEeccCCCeEEEEeccCCCCCCceEEEEEccCCCc--ccccccCCccccceeEEEEeCCeEEEEec-CCEEEEEeC
Q psy74 51 PAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEES--ERKEVADGKRSTGISAVWVARNRFAVLDR-NHTILIKNL 127 (134)
Q Consensus 51 ~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lpk~~~--~~~~~~~~~~g~g~~AvFVaRNRfAvldk-~~~i~Iknl 127 (134)
.+.-|+|||....+....+ ..+.-|+| .++.. .... -.+ -+.-=+-.+++.++||+.+. .++|.+-.+
T Consensus 23 e~SGLTy~pd~~tLfaV~d----~~~~i~el---s~~G~vlr~i~-l~g-~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 23 ELSGLTYNPDTGTLFAVQD----EPGEIYEL---SLDGKVLRRIP-LDG-FGDYEGITYLGNGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp -EEEEEEETTTTEEEEEET----TTTEEEEE---ETT--EEEEEE--SS--SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred CccccEEcCCCCeEEEEEC----CCCEEEEE---cCCCCEEEEEe-CCC-CCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence 3678999998776555534 34444444 44322 1111 111 11122367799999999996 888877666
No 65
>KOG1036|consensus
Probab=35.56 E-value=95 Score=26.69 Aligned_cols=55 Identities=16% Similarity=0.212 Sum_probs=40.4
Q ss_pred cceeeCCEEEE-EeCCeEEEEECCCCCceeeEEee-cCCCCCceEEEeccCCCeEEEEe
Q psy74 12 AYTVHNNVMYY-VKERFLHRLDLTNSKDSVVMQLR-GGGRIPAHSISYNATEHSILVTT 68 (134)
Q Consensus 12 a~~~~~n~L~Y-vkek~l~~~D~~t~~~~~~~slr-g~~~~~~~slsyNpae~~vLv~~ 68 (134)
+.++.+|.|.= ..++++.+||+.+-.+ |. +.| ++-.++.|.+.+.|..-...+.+
T Consensus 140 ~~~v~g~~LvVg~~~r~v~iyDLRn~~~-~~-q~reS~lkyqtR~v~~~pn~eGy~~sS 196 (323)
T KOG1036|consen 140 CMDVSGNRLVVGTSDRKVLIYDLRNLDE-PF-QRRESSLKYQTRCVALVPNGEGYVVSS 196 (323)
T ss_pred EEeccCCEEEEeecCceEEEEEcccccc-hh-hhccccceeEEEEEEEecCCCceEEEe
Confidence 45667888887 6999999999987332 33 666 66677889999999655666543
No 66
>PTZ00420 coronin; Provisional
Probab=35.07 E-value=3.6e+02 Score=24.71 Aligned_cols=57 Identities=14% Similarity=0.289 Sum_probs=37.9
Q ss_pred eCCeEEEEECCCCC------ceeeEEeecCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEccC
Q psy74 24 KERFLHRLDLTNSK------DSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPK 86 (134)
Q Consensus 24 kek~l~~~D~~t~~------~~~~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lpk 86 (134)
.|..|+.||+.+.. ..|+..+.|. --....+.++|....+|++.. .| |+..+..+..
T Consensus 95 ~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH-~~~V~sVaf~P~g~~iLaSgS----~D-gtIrIWDl~t 157 (568)
T PTZ00420 95 EDLTIRVWEIPHNDESVKEIKDPQCILKGH-KKKISIIDWNPMNYYIMCSSG----FD-SFVNIWDIEN 157 (568)
T ss_pred CCCeEEEEECCCCCccccccccceEEeecC-CCcEEEEEECCCCCeEEEEEe----CC-CeEEEEECCC
Confidence 78899999998632 1355556542 235789999998877777644 23 4666665543
No 67
>PRK04792 tolB translocation protein TolB; Provisional
Probab=35.06 E-value=3e+02 Score=23.76 Aligned_cols=68 Identities=12% Similarity=0.205 Sum_probs=41.3
Q ss_pred CCcceeeCCEEEEEe--CC--eEEEEECCCCCceeeEEeecCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEcc
Q psy74 10 RPAYTVHNNVMYYVK--ER--FLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIP 85 (134)
Q Consensus 10 RPa~~~~~n~L~Yvk--ek--~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lp 85 (134)
.|++.-.++.|+|+. +. +|+.+|+.++.-.. |.. ........++.|....+++++. .+|..+||.+.
T Consensus 266 ~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~---lt~-~~~~~~~p~wSpDG~~I~f~s~-----~~g~~~Iy~~d 336 (448)
T PRK04792 266 APRFSPDGKKLALVLSKDGQPEIYVVDIATKALTR---ITR-HRAIDTEPSWHPDGKSLIFTSE-----RGGKPQIYRVN 336 (448)
T ss_pred CeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEE---Ccc-CCCCccceEECCCCCEEEEEEC-----CCCCceEEEEE
Confidence 356666788899973 32 58889998754322 221 1112345677888777777654 33456777655
Q ss_pred C
Q psy74 86 K 86 (134)
Q Consensus 86 k 86 (134)
-
T Consensus 337 l 337 (448)
T PRK04792 337 L 337 (448)
T ss_pred C
Confidence 3
No 68
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=34.48 E-value=73 Score=27.96 Aligned_cols=30 Identities=37% Similarity=0.669 Sum_probs=20.5
Q ss_pred eCCEEEEEe-CCeEEEEECCCCCceeeEEee
Q psy74 16 HNNVMYYVK-ERFLHRLDLTNSKDSVVMQLR 45 (134)
Q Consensus 16 ~~n~L~Yvk-ek~l~~~D~~t~~~~~~~slr 45 (134)
-++.||||| ++.|+..|+.|.+...+..+-
T Consensus 91 ~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p 121 (386)
T PF14583_consen 91 DDRALYYVKNGRSLRRVDLDTLEERVVYEVP 121 (386)
T ss_dssp TSSEEEEEETTTEEEEEETTT--EEEEEE--
T ss_pred CCCeEEEEECCCeEEEEECCcCcEEEEEECC
Confidence 346799996 579999999997766555554
No 69
>PLN00181 protein SPA1-RELATED; Provisional
Probab=33.68 E-value=3.9e+02 Score=24.71 Aligned_cols=101 Identities=7% Similarity=0.068 Sum_probs=57.1
Q ss_pred CEEEEE--eCCeEEEEECCCCCceeeEEeecCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEccCCCccccccc
Q psy74 18 NVMYYV--KERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEESERKEVA 95 (134)
Q Consensus 18 n~L~Yv--kek~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lpk~~~~~~~~~ 95 (134)
+.++.. .|..++.||+.+... +..+.+. .....+.+++.+...|++.. .+|..-++.+....... ..-
T Consensus 588 ~~~L~Sgs~Dg~v~iWd~~~~~~--~~~~~~~--~~v~~v~~~~~~g~~latgs-----~dg~I~iwD~~~~~~~~-~~~ 657 (793)
T PLN00181 588 PTLLASGSDDGSVKLWSINQGVS--IGTIKTK--ANICCVQFPSESGRSLAFGS-----ADHKVYYYDLRNPKLPL-CTM 657 (793)
T ss_pred CCEEEEEcCCCEEEEEECCCCcE--EEEEecC--CCeEEEEEeCCCCCEEEEEe-----CCCeEEEEECCCCCccc-eEe
Confidence 345554 789999999987543 4444421 24567788765555555433 33456666554321100 011
Q ss_pred CCccccceeEEEEeCCeEEEEecCCEEEEEeCC
Q psy74 96 DGKRSTGISAVWVARNRFAVLDRNHTILIKNLK 128 (134)
Q Consensus 96 ~~~~g~g~~AvFVaRNRfAvldk~~~i~Iknl~ 128 (134)
....+.-....|..-+.++.-..+++|.|-|+.
T Consensus 658 ~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~ 690 (793)
T PLN00181 658 IGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLS 690 (793)
T ss_pred cCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCC
Confidence 233333445667655666666668889998885
No 70
>KOG1007|consensus
Probab=32.91 E-value=82 Score=27.28 Aligned_cols=51 Identities=18% Similarity=0.195 Sum_probs=37.7
Q ss_pred CCEEEEEeCCeEEEEECCCCCceeeEEeecCCCCCceEEEeccCCCeEEEEec
Q psy74 17 NNVMYYVKERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTR 69 (134)
Q Consensus 17 ~n~L~Yvkek~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNpae~~vLv~~~ 69 (134)
+|++-=..|..|+.||+.| .....+++...-+-.|.|-|||....+|++-+
T Consensus 184 gnqv~tt~d~tl~~~D~RT--~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~g 234 (370)
T KOG1007|consen 184 GNQVATTSDSTLQFWDLRT--MKKNNSIEDAHGQRVRDLDFNPNKQHILVTCG 234 (370)
T ss_pred cceEEEeCCCcEEEEEccc--hhhhcchhhhhcceeeeccCCCCceEEEEEcC
Confidence 4566666999999999996 33345566222224799999999999999877
No 71
>PRK01029 tolB translocation protein TolB; Provisional
Probab=32.86 E-value=3.2e+02 Score=23.48 Aligned_cols=72 Identities=10% Similarity=0.281 Sum_probs=40.0
Q ss_pred CCcceeeCCEEEEEeCC------eEEEEECCCCCceeeEEeecCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEE
Q psy74 10 RPAYTVHNNVMYYVKER------FLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYM 83 (134)
Q Consensus 10 RPa~~~~~n~L~Yvkek------~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~ 83 (134)
.|++.-.|..|.|+-++ +++.||+.+........|.........+.++.|....+++.++ .+|..+|+.
T Consensus 235 ~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~-----~~g~~~ly~ 309 (428)
T PRK01029 235 MPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSN-----KDGRPRIYI 309 (428)
T ss_pred ceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEEC-----CCCCceEEE
Confidence 46677778899998533 4444666653212222333111111234688898887777755 234567776
Q ss_pred ccC
Q psy74 84 IPK 86 (134)
Q Consensus 84 lpk 86 (134)
++-
T Consensus 310 ~~~ 312 (428)
T PRK01029 310 MQI 312 (428)
T ss_pred EEC
Confidence 543
No 72
>KOG0290|consensus
Probab=30.97 E-value=3.6e+02 Score=23.46 Aligned_cols=100 Identities=12% Similarity=0.180 Sum_probs=60.6
Q ss_pred eCCeEEEEECCCCCceeeEEeecCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEccCCCcccccccCCccccce
Q psy74 24 KERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEESERKEVADGKRSTGI 103 (134)
Q Consensus 24 kek~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lpk~~~~~~~~~~~~~g~g~ 103 (134)
-|..+||||+......+++-=-+++-.|.-.|++|+.+.-.|-+.. .|...--+..+--..+--. .-..+++.-+
T Consensus 217 aDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~----~dS~~V~iLDiR~P~tpva-~L~~H~a~VN 291 (364)
T KOG0290|consen 217 ADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFA----MDSNKVVILDIRVPCTPVA-RLRNHQASVN 291 (364)
T ss_pred CCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhh----cCCceEEEEEecCCCccee-hhhcCccccc
Confidence 6888999999986666665544555677888999999987776655 4443333333222222111 1235555555
Q ss_pred eEEEE--eCCeEEEEecCCEEEEEeCC
Q psy74 104 SAVWV--ARNRFAVLDRNHTILIKNLK 128 (134)
Q Consensus 104 ~AvFV--aRNRfAvldk~~~i~Iknl~ 128 (134)
+-.|- +++.++.--.+.+..|=+|+
T Consensus 292 gIaWaPhS~~hictaGDD~qaliWDl~ 318 (364)
T KOG0290|consen 292 GIAWAPHSSSHICTAGDDCQALIWDLQ 318 (364)
T ss_pred ceEecCCCCceeeecCCcceEEEEecc
Confidence 55564 45555555456677777764
No 73
>PTZ00420 coronin; Provisional
Probab=30.91 E-value=4.2e+02 Score=24.26 Aligned_cols=95 Identities=16% Similarity=0.259 Sum_probs=53.6
Q ss_pred eEEEEECCCCCceeeEEeecCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEccCCCc--c---ccc-ccCCccc
Q psy74 27 FLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEES--E---RKE-VADGKRS 100 (134)
Q Consensus 27 ~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lpk~~~--~---~~~-~~~~~~g 100 (134)
.++.||..+. .++..++|. -.+...+.++|....+|++.. +.|+--+..++.... . .+. .-.++.+
T Consensus 55 vI~L~~~~r~--~~v~~L~gH-~~~V~~lafsP~~~~lLASgS-----~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~ 126 (568)
T PTZ00420 55 AIRLENQMRK--PPVIKLKGH-TSSILDLQFNPCFSEILASGS-----EDLTIRVWEIPHNDESVKEIKDPQCILKGHKK 126 (568)
T ss_pred EEEeeecCCC--ceEEEEcCC-CCCEEEEEEcCCCCCEEEEEe-----CCCeEEEEECCCCCccccccccceEEeecCCC
Confidence 4556655542 355666642 236899999998666676644 445777777775321 0 000 0123334
Q ss_pred cceeEEEEeCCe--EEEEecCCEEEEEeCCC
Q psy74 101 TGISAVWVARNR--FAVLDRNHTILIKNLKN 129 (134)
Q Consensus 101 ~g~~AvFVaRNR--fAvldk~~~i~Iknl~n 129 (134)
...+..|-.-.+ +|.-..+++|.|-|+.+
T Consensus 127 ~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~t 157 (568)
T PTZ00420 127 KISIIDWNPMNYYIMCSSGFDSFVNIWDIEN 157 (568)
T ss_pred cEEEEEECCCCCeEEEEEeCCCeEEEEECCC
Confidence 445556653333 34444578898888864
No 74
>PF13619 KTSC: KTSC domain
Probab=30.82 E-value=84 Score=19.69 Aligned_cols=32 Identities=22% Similarity=0.482 Sum_probs=26.5
Q ss_pred CceEEEeccCCCeEEEEeccCCCCCCceEEEEEccCC
Q psy74 51 PAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKE 87 (134)
Q Consensus 51 ~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lpk~ 87 (134)
..+++-|++....+-|... +|+.|+...+|..
T Consensus 5 ~I~~v~Yd~~~~~L~V~F~-----~G~~Y~Y~~Vp~~ 36 (60)
T PF13619_consen 5 NIRSVGYDPETRTLEVEFK-----SGSVYRYFGVPPE 36 (60)
T ss_pred cccEEeECCCCCEEEEEEc-----CCCEEEECCCCHH
Confidence 4678999999888888766 7778999988876
No 75
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=30.65 E-value=2.8e+02 Score=22.12 Aligned_cols=105 Identities=10% Similarity=0.153 Sum_probs=58.4
Q ss_pred CCEEEEE---eCCeEEEEECCC-CCc-eeeEEeecCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEccCCCc-c
Q psy74 17 NNVMYYV---KERFLHRLDLTN-SKD-SVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEES-E 90 (134)
Q Consensus 17 ~n~L~Yv---kek~l~~~D~~t-~~~-~~~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lpk~~~-~ 90 (134)
++..+|+ .+..|.+||+.+ ..- ..+-.+.| ...|+.+.++|...-++|... +.+.-.++.+-.... .
T Consensus 90 ~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~--~~~~~~~~~~p~g~~l~v~~~-----~~~~v~v~d~~~~g~l~ 162 (330)
T PRK11028 90 QGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEG--LEGCHSANIDPDNRTLWVPCL-----KEDRIRLFTLSDDGHLV 162 (330)
T ss_pred CCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccC--CCcccEeEeCCCCCEEEEeeC-----CCCEEEEEEECCCCccc
Confidence 3456665 368899999975 211 12222222 135788889998877777643 444666665543211 0
Q ss_pred --cccccCCccccceeEEEEeCC--eEEEEec-CCEEEEEeCC
Q psy74 91 --RKEVADGKRSTGISAVWVARN--RFAVLDR-NHTILIKNLK 128 (134)
Q Consensus 91 --~~~~~~~~~g~g~~AvFVaRN--RfAvldk-~~~i~Iknl~ 128 (134)
.........|.|.-.+-+.++ ++.|.+. +++|.+.+++
T Consensus 163 ~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~ 205 (330)
T PRK11028 163 AQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLK 205 (330)
T ss_pred ccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEe
Confidence 000001122444444555666 5667776 8889988886
No 76
>PRK03629 tolB translocation protein TolB; Provisional
Probab=30.31 E-value=3.5e+02 Score=23.11 Aligned_cols=66 Identities=5% Similarity=0.196 Sum_probs=38.4
Q ss_pred CcceeeCCEEEEEeCC----eEEEEECCCCCceeeEEeecCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEcc
Q psy74 11 PAYTVHNNVMYYVKER----FLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIP 85 (134)
Q Consensus 11 Pa~~~~~n~L~Yvkek----~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lp 85 (134)
|+|.-.++.|+|+.++ +|+.+|+.++....+ .-.+. ......+.|....+++... ++|.++++.+.
T Consensus 292 ~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~l-t~~~~---~~~~~~~SpDG~~Ia~~~~-----~~g~~~I~~~d 361 (429)
T PRK03629 292 PTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRI-TWEGS---QNQDADVSSDGKFMVMVSS-----NGGQQHIAKQD 361 (429)
T ss_pred eEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEe-ecCCC---CccCEEECCCCCEEEEEEc-----cCCCceEEEEE
Confidence 4555577889999654 677778876533222 11121 1234566787777666544 34456676554
No 77
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=30.18 E-value=1.3e+02 Score=26.52 Aligned_cols=53 Identities=11% Similarity=0.155 Sum_probs=30.6
Q ss_pred cceeeCCEEEEEe-CCeEEEEECCCCCceeeEEeecCCCCCceEEEeccCCCeEEEEec
Q psy74 12 AYTVHNNVMYYVK-ERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTR 69 (134)
Q Consensus 12 a~~~~~n~L~Yvk-ek~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNpae~~vLv~~~ 69 (134)
+-.+.++.|+.++ +..|+.||.++.+-..-+.+. +++.+.+|++..-|.+.++
T Consensus 111 ~~~If~G~LL~~~~~~~i~~yDw~~~~~i~~i~v~-----~vk~V~Ws~~g~~val~t~ 164 (443)
T PF04053_consen 111 VEKIFGGNLLGVKSSDFICFYDWETGKLIRRIDVS-----AVKYVIWSDDGELVALVTK 164 (443)
T ss_dssp EEEEE-SSSEEEEETTEEEEE-TTT--EEEEESS------E-EEEEE-TTSSEEEEE-S
T ss_pred cceEEcCcEEEEECCCCEEEEEhhHcceeeEEecC-----CCcEEEEECCCCEEEEEeC
Confidence 4456778888884 445999999987554444332 3589999988665555533
No 78
>KOG0288|consensus
Probab=30.12 E-value=4.1e+02 Score=23.92 Aligned_cols=98 Identities=11% Similarity=0.162 Sum_probs=58.1
Q ss_pred eCCeEEEEECCCCCceeeEEeecCCCCCceEEEeccCCCeEEEEeccCCCC----CCceEEEEEccCCCcccccccCCcc
Q psy74 24 KERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNF----ENSTYDLYMIPKEESERKEVADGKR 99 (134)
Q Consensus 24 kek~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~----d~g~yeL~~lpk~~~~~~~~~~~~~ 99 (134)
.|+.||.||..+..-+--+++-| -..+|+.++....+|.+++ ++. |..++++...= .+.+--...|
T Consensus 320 ~DkkvRfwD~Rs~~~~~sv~~gg----~vtSl~ls~~g~~lLsssR--Ddtl~viDlRt~eI~~~~-sA~g~k~asD--- 389 (459)
T KOG0288|consen 320 FDKKVRFWDIRSADKTRSVPLGG----RVTSLDLSMDGLELLSSSR--DDTLKVIDLRTKEIRQTF-SAEGFKCASD--- 389 (459)
T ss_pred cccceEEEeccCCceeeEeecCc----ceeeEeeccCCeEEeeecC--CCceeeeecccccEEEEe-eccccccccc---
Confidence 68889999988644333333333 4678999999999999977 111 33344443211 1011000111
Q ss_pred ccceeEEEEeCCeEEEEec-CCEEEEEeCC-CceEe
Q psy74 100 STGISAVWVARNRFAVLDR-NHTILIKNLK-NEFCT 133 (134)
Q Consensus 100 g~g~~AvFVaRNRfAvldk-~~~i~Iknl~-n~~~K 133 (134)
-+.++|=.-++++.--. ++.|-|=++. .++.|
T Consensus 390 --wtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~ 423 (459)
T KOG0288|consen 390 --WTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEK 423 (459)
T ss_pred --cceeEECCCCceeeeccCCCcEEEEEccCceEEE
Confidence 34477777788877776 7888888874 44544
No 79
>PRK04922 tolB translocation protein TolB; Provisional
Probab=29.92 E-value=3.5e+02 Score=22.97 Aligned_cols=67 Identities=12% Similarity=0.307 Sum_probs=41.9
Q ss_pred CcceeeCCEEEEEeCC----eEEEEECCCCCceeeEEeecCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEccC
Q psy74 11 PAYTVHNNVMYYVKER----FLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPK 86 (134)
Q Consensus 11 Pa~~~~~n~L~Yvkek----~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lpk 86 (134)
|+|.-.+..|+|+-++ +|+.+|+.++....+. ..|. + ..+.++.|....++++.. +++.+.|+.+.-
T Consensus 297 ~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt-~~g~-~--~~~~~~SpDG~~Ia~~~~-----~~~~~~I~v~d~ 367 (433)
T PRK04922 297 PTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLT-FQGN-Y--NARASVSPDGKKIAMVHG-----SGGQYRIAVMDL 367 (433)
T ss_pred eEECCCCCEEEEEECCCCCceEEEEECCCCCeEEee-cCCC-C--ccCEEECCCCCEEEEEEC-----CCCceeEEEEEC
Confidence 5666677889998543 5888888765433222 2232 1 235788888877777644 455677776653
No 80
>PF13964 Kelch_6: Kelch motif
Probab=29.54 E-value=1.1e+02 Score=17.66 Aligned_cols=29 Identities=17% Similarity=0.161 Sum_probs=19.4
Q ss_pred CCCCcceeeCCEEEEE--e-C-----CeEEEEECCCC
Q psy74 8 RERPAYTVHNNVMYYV--K-E-----RFLHRLDLTNS 36 (134)
Q Consensus 8 RERPa~~~~~n~L~Yv--k-e-----k~l~~~D~~t~ 36 (134)
|-.++.+..++.||.+ . + +.+..||+.|.
T Consensus 2 R~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~ 38 (50)
T PF13964_consen 2 RYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETN 38 (50)
T ss_pred CccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCC
Confidence 3445667788888876 2 2 45777887774
No 81
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=29.21 E-value=2.2e+02 Score=24.90 Aligned_cols=22 Identities=9% Similarity=0.232 Sum_probs=16.7
Q ss_pred CEEEEE-eCCeEEEEECCCCCce
Q psy74 18 NVMYYV-KERFLHRLDLTNSKDS 39 (134)
Q Consensus 18 n~L~Yv-kek~l~~~D~~t~~~~ 39 (134)
+.||=+ .|+.||+||+.+..-.
T Consensus 231 ~~l~tl~~D~~LRiW~l~t~~~~ 253 (547)
T PF11715_consen 231 TFLFTLSRDHTLRIWSLETGQCL 253 (547)
T ss_dssp TEEEEEETTSEEEEEETTTTCEE
T ss_pred CEEEEEeCCCeEEEEECCCCeEE
Confidence 345545 9999999999996553
No 82
>KOG4283|consensus
Probab=28.53 E-value=1.9e+02 Score=25.16 Aligned_cols=13 Identities=15% Similarity=0.054 Sum_probs=9.7
Q ss_pred eCCeEEEEECCCC
Q psy74 24 KERFLHRLDLTNS 36 (134)
Q Consensus 24 kek~l~~~D~~t~ 36 (134)
.|+.|.+||.+|.
T Consensus 122 FDhtlKVWDtnTl 134 (397)
T KOG4283|consen 122 FDHTLKVWDTNTL 134 (397)
T ss_pred ccceEEEeecccc
Confidence 5777888887773
No 83
>KOG2055|consensus
Probab=28.49 E-value=2.1e+02 Score=26.02 Aligned_cols=97 Identities=7% Similarity=0.137 Sum_probs=58.6
Q ss_pred eCCeEEEEECCC-CCceeeEEee--cCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEccCCCc-ccccccCCcc
Q psy74 24 KERFLHRLDLTN-SKDSVVMQLR--GGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEES-ERKEVADGKR 99 (134)
Q Consensus 24 kek~l~~~D~~t-~~~~~~~slr--g~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lpk~~~-~~~~~~~~~~ 99 (134)
....+-.||.++ -.+..--+++ .+-.....+|.+||.-...-+++. .-.-..-|+.+|.-+. ++=.....+-
T Consensus 407 ~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~----~~knalrLVHvPS~TVFsNfP~~n~~v 482 (514)
T KOG2055|consen 407 DSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASR----VKKNALRLVHVPSCTVFSNFPTSNTKV 482 (514)
T ss_pred CcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhh----ccccceEEEeccceeeeccCCCCCCcc
Confidence 667788888776 3443333333 333346789999988776666666 3344899999997755 3332334566
Q ss_pred ccceeEEEEeCCeEEEEec-CCEEEE
Q psy74 100 STGISAVWVARNRFAVLDR-NHTILI 124 (134)
Q Consensus 100 g~g~~AvFVaRNRfAvldk-~~~i~I 124 (134)
|...+-.|=-+--|..+-. .+.+-+
T Consensus 483 g~vtc~aFSP~sG~lAvGNe~grv~l 508 (514)
T KOG2055|consen 483 GHVTCMAFSPNSGYLAVGNEAGRVHL 508 (514)
T ss_pred cceEEEEecCCCceEEeecCCCceee
Confidence 6666666655444444433 444443
No 84
>PF04663 Phenol_monoox: Phenol hydroxylase conserved region; InterPro: IPR006756 Under aerobic conditions, phenol is usually hydroxylated to catechol and degraded via the meta or ortho pathways. Two types of phenol hydroxylase are known: one is a multi-component enzyme the other is a single-component monooxygenase. This signature is found in both types of enzymes [, ].; PDB: 3U52_F 2INN_F 2INP_E.
Probab=27.86 E-value=31 Score=23.07 Aligned_cols=15 Identities=27% Similarity=0.521 Sum_probs=9.6
Q ss_pred eeCCEEEEE-eCCeEE
Q psy74 15 VHNNVMYYV-KERFLH 29 (134)
Q Consensus 15 ~~~n~L~Yv-kek~l~ 29 (134)
.|+|+|.|| .|.++-
T Consensus 8 F~g~qLlYigWd~Hll 23 (67)
T PF04663_consen 8 FHGNQLLYIGWDDHLL 23 (67)
T ss_dssp GTT-EEEEEE-TT-TT
T ss_pred CCCceEEEEEecCCee
Confidence 478899999 888763
No 85
>KOG0278|consensus
Probab=27.69 E-value=3.9e+02 Score=22.85 Aligned_cols=78 Identities=12% Similarity=0.276 Sum_probs=45.2
Q ss_pred eCCeEEEEECCCCCceeeEEeecCCCCCceEEEeccCCCeEEEEeccCCCC-CCceEEEEE---ccCCCcccccccCCcc
Q psy74 24 KERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNF-ENSTYDLYM---IPKEESERKEVADGKR 99 (134)
Q Consensus 24 kek~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~-d~g~yeL~~---lpk~~~~~~~~~~~~~ 99 (134)
.+|-+|+||..|...+--+.++. ++.||-+.+...-+-+.|+.+... |--+++++. +|-...++. -++++
T Consensus 163 dd~tVRLWD~rTgt~v~sL~~~s----~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SAS--L~P~k 236 (334)
T KOG0278|consen 163 DDKTVRLWDHRTGTEVQSLEFNS----PVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESAS--LHPKK 236 (334)
T ss_pred cCCceEEEEeccCcEEEEEecCC----CCcceeeccCCCEEEEecCceeEEeccccccceeeccCcccccccc--ccCCC
Confidence 67889999999877665555543 577888877777666655411000 333566653 565533222 12333
Q ss_pred ccceeEEEEeCCe
Q psy74 100 STGISAVWVARNR 112 (134)
Q Consensus 100 g~g~~AvFVaRNR 112 (134)
-+|||-+-
T Consensus 237 -----~~fVaGge 244 (334)
T KOG0278|consen 237 -----EFFVAGGE 244 (334)
T ss_pred -----ceEEecCc
Confidence 36777664
No 86
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=27.30 E-value=3.5e+02 Score=23.42 Aligned_cols=47 Identities=17% Similarity=0.235 Sum_probs=32.1
Q ss_pred EEEE-eCCeEEEEECCCCCceeeEEee----cCCCCC-ceEEEeccCCCeEEEE
Q psy74 20 MYYV-KERFLHRLDLTNSKDSVVMQLR----GGGRIP-AHSISYNATEHSILVT 67 (134)
Q Consensus 20 L~Yv-kek~l~~~D~~t~~~~~~~slr----g~~~~~-~~slsyNpae~~vLv~ 67 (134)
+-+. |=.+||.||.+.. .+-++=-+ ...|.. ...|-|||-+..+|+.
T Consensus 71 IdF~NKYSHVH~yd~e~~-~VrLLWkesih~~~~WaGEVSdIlYdP~~D~LLlA 123 (339)
T PF09910_consen 71 IDFRNKYSHVHEYDTEND-SVRLLWKESIHDKTKWAGEVSDILYDPYEDRLLLA 123 (339)
T ss_pred EEEeeccceEEEEEcCCC-eEEEEEecccCCccccccchhheeeCCCcCEEEEE
Confidence 4444 6677888987753 33333322 457774 6779999999999997
No 87
>KOG1538|consensus
Probab=26.49 E-value=2.8e+02 Score=26.90 Aligned_cols=96 Identities=19% Similarity=0.342 Sum_probs=57.9
Q ss_pred eeeCCEEEEEeCCeEEEEECCCC--CceeeEE----ee--cCCCCCceEEEeccCCC-eEEEEeccCCCCCCceEEEEE-
Q psy74 14 TVHNNVMYYVKERFLHRLDLTNS--KDSVVMQ----LR--GGGRIPAHSISYNATEH-SILVTTRNANNFENSTYDLYM- 83 (134)
Q Consensus 14 ~~~~n~L~Yvkek~l~~~D~~t~--~~~~~~s----lr--g~~~~~~~slsyNpae~-~vLv~~~~~~~~d~g~yeL~~- 83 (134)
.+.++.+--+.|+.|+.|||... ++--+-| +| |+ |+.+ ..+|-. .+|+.|.++.
T Consensus 382 VVc~~HiVlCqekrLqClDF~Gvk~ReW~M~S~iRYikV~GG-----------P~gREgL~vGl-----knGqV~kiF~d 445 (1081)
T KOG1538|consen 382 VVCANHIVLCQEKRLQCLDFSGVKEREWQMESLIRYIKVIGG-----------PPGREGLLVGL-----KNGQVLKIFVD 445 (1081)
T ss_pred EEEcCeEEEEcccceeeecccchhhhhhhHHHHHHhhhhhcC-----------CCCcceeEEEe-----cCCcEEEEEec
Confidence 34667777789999999999872 2211111 22 32 5555 555543 4889999984
Q ss_pred --ccCCCcccccccCCccccceeEEEEeCCeEEEEecCCEEEEEeCCCce
Q psy74 84 --IPKEESERKEVADGKRSTGISAVWVARNRFAVLDRNHTILIKNLKNEF 131 (134)
Q Consensus 84 --lpk~~~~~~~~~~~~~g~g~~AvFVaRNRfAvldk~~~i~Iknl~n~~ 131 (134)
+|---+....+. .|+ -+=-.|-++||+|.+.+..++|+.+..
T Consensus 446 N~~PiLl~~~~tAv-----rCl-DINA~R~kLAvVDD~~~c~v~DI~t~e 489 (1081)
T KOG1538|consen 446 NLFPILLLKQATAV-----RCL-DINASRKKLAVVDDNDTCLVYDIDTKE 489 (1081)
T ss_pred CCchhheeccccee-----EEe-eccCCcceEEEEccCCeEEEEEccCCc
Confidence 442211111000 011 122368899999999999999997653
No 88
>KOG0270|consensus
Probab=25.84 E-value=1.4e+02 Score=26.93 Aligned_cols=43 Identities=14% Similarity=0.309 Sum_probs=33.3
Q ss_pred eCCeEEEEECCCCCceeeEEeecCCCCCceEEEeccCCCeEEEEec
Q psy74 24 KERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTR 69 (134)
Q Consensus 24 kek~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNpae~~vLv~~~ 69 (134)
-|+-|..||+.+.+-...+.-.|. +..+|.++|.+..+|++..
T Consensus 264 aD~TV~lWD~~~g~p~~s~~~~~k---~Vq~l~wh~~~p~~LLsGs 306 (463)
T KOG0270|consen 264 ADKTVKLWDVDTGKPKSSITHHGK---KVQTLEWHPYEPSVLLSGS 306 (463)
T ss_pred CCceEEEEEcCCCCcceehhhcCC---ceeEEEecCCCceEEEecc
Confidence 688899999998665444443343 6789999999999999744
No 89
>KOG1587|consensus
Probab=25.54 E-value=1.5e+02 Score=27.23 Aligned_cols=61 Identities=15% Similarity=0.196 Sum_probs=42.3
Q ss_pred EEEEE--eCCeEEEEECCCCCceeeEEee-cCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEccCC
Q psy74 19 VMYYV--KERFLHRLDLTNSKDSVVMQLR-GGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKE 87 (134)
Q Consensus 19 ~L~Yv--kek~l~~~D~~t~~~~~~~slr-g~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lpk~ 87 (134)
.+||+ -+..|..|||......|+++++ + .++...-..+-...+|.+.+ ++|.-.++.|+-.
T Consensus 455 avF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~---~~~l~~~~~s~~g~~lavGd-----~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 455 AVFATVDGDGNLDIWDLLQDDEEPVLSQKVC---SPALTRVRWSPNGKLLAVGD-----ANGTTHILKLSES 518 (555)
T ss_pred eEEEEEcCCCceehhhhhccccCCccccccc---ccccceeecCCCCcEEEEec-----CCCcEEEEEcCch
Confidence 47887 4788999999999999999998 5 23333323333355555544 7788888887644
No 90
>KOG0306|consensus
Probab=25.26 E-value=6.5e+02 Score=24.57 Aligned_cols=100 Identities=18% Similarity=0.271 Sum_probs=63.0
Q ss_pred CEEEEEeCCeEEEEECCCCCceeeEEee------cCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEccCCCccc
Q psy74 18 NVMYYVKERFLHRLDLTNSKDSVVMQLR------GGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEESER 91 (134)
Q Consensus 18 n~L~Yvkek~l~~~D~~t~~~~~~~slr------g~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lpk~~~~~ 91 (134)
+.|.|.-++-++.|-++.+........| |.++.-.|+|+... ..+++.++ .|++..+- -+++..-
T Consensus 336 ~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~--d~~~~~Sg-----a~~SikiW--n~~t~kc 406 (888)
T KOG0306|consen 336 NTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSS--DSILLASG-----AGESIKIW--NRDTLKC 406 (888)
T ss_pred eeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeec--Cceeeeec-----CCCcEEEE--EccCcce
Confidence 5788888888888877763333222222 55777788888753 23344433 44455553 3332211
Q ss_pred ccccCCccccceeEEEEeCCeEEEEec-CCEEEEEeCC
Q psy74 92 KEVADGKRSTGISAVWVARNRFAVLDR-NHTILIKNLK 128 (134)
Q Consensus 92 ~~~~~~~~g~g~~AvFVaRNRfAvldk-~~~i~Iknl~ 128 (134)
.- ...-|..+++.||--.|++|+-. +|.|.|.++.
T Consensus 407 iR--Ti~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdla 442 (888)
T KOG0306|consen 407 IR--TITCGYILASKFVPGDRYIVLGTKNGELQVFDLA 442 (888)
T ss_pred eE--EeccccEEEEEecCCCceEEEeccCCceEEEEee
Confidence 10 12223788999999999999997 9999999984
No 91
>KOG0639|consensus
Probab=24.41 E-value=51 Score=30.49 Aligned_cols=53 Identities=19% Similarity=0.253 Sum_probs=0.0
Q ss_pred CCeEEEEECCCCCceeeEEeecCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEccCC
Q psy74 25 ERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKE 87 (134)
Q Consensus 25 ek~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lpk~ 87 (134)
|+-||.||+.+.+..---..++ +..+|.|+|++-=++|- .+|+.-|+..-.|.
T Consensus 572 DntvRcWDlregrqlqqhdF~S----QIfSLg~cP~~dWlavG------Mens~vevlh~skp 624 (705)
T KOG0639|consen 572 DNTVRCWDLREGRQLQQHDFSS----QIFSLGYCPTGDWLAVG------MENSNVEVLHTSKP 624 (705)
T ss_pred ccceeehhhhhhhhhhhhhhhh----hheecccCCCccceeee------cccCcEEEEecCCc
No 92
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=23.28 E-value=3.9e+02 Score=21.29 Aligned_cols=49 Identities=10% Similarity=0.210 Sum_probs=29.5
Q ss_pred EEEEE---eCCeEEEEECCCCCce-eeEEeecCCCCCceEEEeccCCCeEEEEec
Q psy74 19 VMYYV---KERFLHRLDLTNSKDS-VVMQLRGGGRIPAHSISYNATEHSILVTTR 69 (134)
Q Consensus 19 ~L~Yv---kek~l~~~D~~t~~~~-~~~slrg~~~~~~~slsyNpae~~vLv~~~ 69 (134)
+.+|| .++.|+.||+.+.... .+-.+.. -..+..|.++|...-+.+...
T Consensus 2 ~~~y~~~~~~~~I~~~~~~~~g~l~~~~~~~~--~~~~~~l~~spd~~~lyv~~~ 54 (330)
T PRK11028 2 QIVYIASPESQQIHVWNLNHEGALTLLQVVDV--PGQVQPMVISPDKRHLYVGVR 54 (330)
T ss_pred eEEEEEcCCCCCEEEEEECCCCceeeeeEEec--CCCCccEEECCCCCEEEEEEC
Confidence 34565 5889999999753222 2223331 124677888887766666543
No 93
>KOG2111|consensus
Probab=23.03 E-value=1.3e+02 Score=26.06 Aligned_cols=29 Identities=28% Similarity=0.360 Sum_probs=23.2
Q ss_pred ceeEEEEeCCeEEEEecCCEEEEEeCCCce
Q psy74 102 GISAVWVARNRFAVLDRNHTILIKNLKNEF 131 (134)
Q Consensus 102 g~~AvFVaRNRfAvldk~~~i~Iknl~n~~ 131 (134)
-.-||++.|+|++|+-++ .|.|.++.++.
T Consensus 96 ~I~~V~l~r~riVvvl~~-~I~VytF~~n~ 124 (346)
T KOG2111|consen 96 EIKAVKLRRDRIVVVLEN-KIYVYTFPDNP 124 (346)
T ss_pred ceeeEEEcCCeEEEEecC-eEEEEEcCCCh
Confidence 345899999999998874 79999887543
No 94
>KOG0307|consensus
Probab=22.74 E-value=1.4e+02 Score=29.60 Aligned_cols=71 Identities=17% Similarity=0.165 Sum_probs=42.9
Q ss_pred CceEEEeccCCCeEEEEeccCCCCCCceEEEEEccCCCcccccccCCcccccee-EEEEeCCe--EEEEecCCEEEEEeC
Q psy74 51 PAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEESERKEVADGKRSTGIS-AVWVARNR--FAVLDRNHTILIKNL 127 (134)
Q Consensus 51 ~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lpk~~~~~~~~~~~~~g~g~~-AvFVaRNR--fAvldk~~~i~Iknl 127 (134)
..-+|+++|++.-.|++++ .||-.+.+= |..+. +-..=..+|..++ .=|--||- ||+-.=+|.|+|.+|
T Consensus 255 GilslsWc~~D~~lllSsg----kD~~ii~wN--~~tgE--vl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl 326 (1049)
T KOG0307|consen 255 GILSLSWCPQDPRLLLSSG----KDNRIICWN--PNTGE--VLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSL 326 (1049)
T ss_pred ceeeeccCCCCchhhhccc----CCCCeeEec--CCCce--EeeecCCCCcceeeeeecCCCcchhhhheeccceeeeee
Confidence 4688999999998888887 676444331 22211 1001122444444 55666765 554444699999999
Q ss_pred CC
Q psy74 128 KN 129 (134)
Q Consensus 128 ~n 129 (134)
.+
T Consensus 327 ~~ 328 (1049)
T KOG0307|consen 327 QG 328 (1049)
T ss_pred ec
Confidence 64
No 95
>KOG0772|consensus
Probab=22.60 E-value=5e+02 Score=24.26 Aligned_cols=98 Identities=19% Similarity=0.301 Sum_probs=58.2
Q ss_pred eCCeEEEEECCC-CCceeeEEee--cCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEccCCCccccc--ccC-C
Q psy74 24 KERFLHRLDLTN-SKDSVVMQLR--GGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEESERKE--VAD-G 97 (134)
Q Consensus 24 kek~l~~~D~~t-~~~~~~~slr--g~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lpk~~~~~~~--~~~-~ 97 (134)
.|.-||.||++. ++...++--| |..++++.+-.|||.-.-| ..+ -.+|+..+-..++... .+. ..+ -
T Consensus 289 ~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~i--Aag----c~DGSIQ~W~~~~~~v-~p~~~vk~AH 361 (641)
T KOG0772|consen 289 YDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLI--AAG----CLDGSIQIWDKGSRTV-RPVMKVKDAH 361 (641)
T ss_pred CCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchh--hhc----ccCCceeeeecCCccc-ccceEeeecc
Confidence 788899999999 7777888777 7789999999999987752 222 3556666655433311 110 011 1
Q ss_pred ccccceeEEEEeCCeEEEEec--CCEEEEEeCC
Q psy74 98 KRSTGISAVWVARNRFAVLDR--NHTILIKNLK 128 (134)
Q Consensus 98 ~~g~g~~AvFVaRNRfAvldk--~~~i~Iknl~ 128 (134)
..|++.+.+=++-.-=..|.+ .++|.+=+|.
T Consensus 362 ~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLr 394 (641)
T KOG0772|consen 362 LPGQDITSISFSYDGNYLLSRGFDDTLKVWDLR 394 (641)
T ss_pred CCCCceeEEEeccccchhhhccCCCceeeeecc
Confidence 223444444444332233333 5666666664
No 96
>KOG0310|consensus
Probab=22.10 E-value=5.3e+02 Score=23.52 Aligned_cols=105 Identities=10% Similarity=0.212 Sum_probs=68.1
Q ss_pred eCCEEEEE--eCCeEEEEECCCCCceeeEEeecCCCCCceEEEeccCCCeEEEEeccCCCCCCceEEEEEccCCCccccc
Q psy74 16 HNNVMYYV--KERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEESERKE 93 (134)
Q Consensus 16 ~~n~L~Yv--kek~l~~~D~~t~~~~~~~slrg~~~~~~~slsyNpae~~vLv~~~~~~~~d~g~yeL~~lpk~~~~~~~ 93 (134)
+++.|+=. -+.+++.||+.+ -+.+-++++ +-.|.+..-|.|.++.+|++-. |++.-.+..+.+..- ..+
T Consensus 78 ~DG~LlaaGD~sG~V~vfD~k~--r~iLR~~~a-h~apv~~~~f~~~d~t~l~s~s-----Dd~v~k~~d~s~a~v-~~~ 148 (487)
T KOG0310|consen 78 SDGRLLAAGDESGHVKVFDMKS--RVILRQLYA-HQAPVHVTKFSPQDNTMLVSGS-----DDKVVKYWDLSTAYV-QAE 148 (487)
T ss_pred cCCeEEEccCCcCcEEEecccc--HHHHHHHhh-ccCceeEEEecccCCeEEEecC-----CCceEEEEEcCCcEE-EEE
Confidence 45667776 667899999543 222222323 3447888999999999999754 666666655554422 111
Q ss_pred ccCCccccceeEEEEeCCeEEEEec--CCEEEEEeCCCc
Q psy74 94 VADGKRSTGISAVWVARNRFAVLDR--NHTILIKNLKNE 130 (134)
Q Consensus 94 ~~~~~~g~g~~AvFVaRNRfAvldk--~~~i~Iknl~n~ 130 (134)
-.+..+.--++-|+.=|+=.|+.- +|+|-+.|+.-+
T Consensus 149 -l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~ 186 (487)
T KOG0310|consen 149 -LSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSL 186 (487)
T ss_pred -ecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccC
Confidence 135555666788888888666665 788888887544
No 97
>PF15184 TOMM6: Mitochondrial import receptor subunit TOM6 homolog
Probab=20.96 E-value=18 Score=23.92 Aligned_cols=8 Identities=63% Similarity=1.327 Sum_probs=6.6
Q ss_pred eEEEEeCC
Q psy74 104 SAVWVARN 111 (134)
Q Consensus 104 ~AvFVaRN 111 (134)
++||+|||
T Consensus 46 agvwlarn 53 (66)
T PF15184_consen 46 AGVWLARN 53 (66)
T ss_pred hhHHhhcc
Confidence 36899998
No 98
>TIGR03658 IsdH_HarA haptoglobin-binding heme uptake protein HarA. HarA is a heme-binding NEAT-domain (NEAr Transporter, pfam05031) protein which has been shown to bind to the haptoglobin-hemoglobin complex in order to extract heme from it. HarA has also been reported to bind hemoglobin directly. HarA (also known as IsdH) contains three NEAT domains as well as a sortase A C-terminal signal for localization to the cell wall. The heme bound at the third of these NEAT domains has been shown to be transferred to the IsdA protein also localized at the cell wall, presumably through an additional specific protein-protein interaction. Haptoglobin is a hemoglobin carrier protein involved in scavenging hemoglobin in the blood following red blood cell lysis and targetting it to the liver.
Probab=20.83 E-value=5.2e+02 Score=24.42 Aligned_cols=48 Identities=17% Similarity=0.319 Sum_probs=33.7
Q ss_pred ceeeCCEEEEEeCCeEEEEECCCCCceeeEEee-cCCCCCceEEEeccC
Q psy74 13 YTVHNNVMYYVKERFLHRLDLTNSKDSVVMQLR-GGGRIPAHSISYNAT 60 (134)
Q Consensus 13 ~~~~~n~L~Yvkek~l~~~D~~t~~~~~~~slr-g~~~~~~~slsyNpa 60 (134)
+.+.--.+||-|.+-.--+++.+..---.+.+= |+...|.+-+||+|.
T Consensus 130 Stv~PA~V~ftk~k~~vELgl~tastWkKFEVYE~nkKLPi~LVsY~~v 178 (895)
T TIGR03658 130 SIKDPADVYYTKKKAEVELDINTASTWKKFEVYENNQKLPVRLVSYSPV 178 (895)
T ss_pred eccCcceEEEcCCCceEEecccccccceeeeEecCCccCceEEEecCCC
Confidence 334444577777777777777775555555555 778889999999984
Done!