RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy74
         (134 letters)



>gnl|CDD|217864 pfam04053, Coatomer_WDAD, Coatomer WD associated region.  This
           region is composed of WD40 repeats.
          Length = 429

 Score = 66.5 bits (163), Expect = 6e-14
 Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 17/96 (17%)

Query: 38  DSVVMQLRGGG--RIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEESERKEVA 95
           + + + L+  G   +   S+S+N     +LV         +  Y +Y             
Sbjct: 17  ELLPLSLKELGSTEVYPQSLSHNPNGRFVLV-------CGDGEYIIYTAL-------AWR 62

Query: 96  DGKRSTGISAVWVARNRFAVLDRNHTILI-KNLKNE 130
           +    +G+  VWV+RNR+AVL+++ T+ I KN K  
Sbjct: 63  NKAFGSGLDFVWVSRNRYAVLEKSGTVKIFKNFKES 98


>gnl|CDD|184798 PRK14704, PRK14704, anaerobic ribonucleoside triphosphate
           reductase; Provisional.
          Length = 618

 Score = 29.4 bits (66), Expect = 0.65
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 8/51 (15%)

Query: 7   ERERPAYTVHNNVMYYVKERFLHRLDLTNSKDSVVMQLRGGGRIPAHSISY 57
           + E  A+    N  Y   E F+H    +NS     M  RGGG++P  SI+Y
Sbjct: 168 QIEEFAWKETENDTYQACEAFIHN---SNS-----MHSRGGGQVPFISINY 210


>gnl|CDD|235989 PRK07324, PRK07324, transaminase; Validated.
          Length = 373

 Score = 27.2 bits (61), Expect = 3.0
 Identities = 9/24 (37%), Positives = 13/24 (54%)

Query: 105 AVWVARNRFAVLDRNHTILIKNLK 128
           A     +R A+L+RN  I+  NL 
Sbjct: 263 ASLALEHRDAILERNRKIVRTNLA 286


>gnl|CDD|236646 PRK10064, PRK10064, catecholate siderophore receptor CirA;
           Provisional.
          Length = 663

 Score = 25.6 bits (56), Expect = 9.9
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 66  VTTRNANNFENSTYDLYMIPKEESERKEVADGKRST 101
           V +RNA  F ++ +DL  IP +  ER EV  G  S+
Sbjct: 108 VNSRNAV-FRHNDFDLNWIPVDAIERIEVVRGPMSS 142


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.320    0.133    0.382 

Gapped
Lambda     K      H
   0.267   0.0709    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,611,724
Number of extensions: 549396
Number of successful extensions: 474
Number of sequences better than 10.0: 1
Number of HSP's gapped: 473
Number of HSP's successfully gapped: 14
Length of query: 134
Length of database: 10,937,602
Length adjustment: 86
Effective length of query: 48
Effective length of database: 7,123,158
Effective search space: 341911584
Effective search space used: 341911584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.6 bits)