RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy74
(134 letters)
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport
protein; 2.50A {Saccharomyces cerevisiae}
Length = 814
Score = 41.2 bits (97), Expect = 3e-05
Identities = 18/145 (12%), Positives = 39/145 (26%), Gaps = 29/145 (20%)
Query: 1 MVVFKFERERPAYTVH-NNVMYYVKERFLH---------RLDLTNSKDSVVMQLR---GG 47
V + P ++ + + + R + +D + G
Sbjct: 295 FTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGS 354
Query: 48 GRIPAHSISYNATEHSILVTTRNANNFENSTYDLYMIPKEESERKEVADGKRSTGISAVW 107
+ S++++ + V + Y +Y + VW
Sbjct: 355 VDVFPQSLAHSPNGRFVTVVG-------DGEYVIYTALAWR-------NKAFGKCQDFVW 400
Query: 108 -VARNRFAVLDRNHTIL-IKNLKNE 130
N +A++D I KN K
Sbjct: 401 GPDSNSYALIDETGQIKYYKNFKEV 425
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.1 bits (72), Expect = 0.046
Identities = 10/86 (11%), Positives = 22/86 (25%), Gaps = 18/86 (20%)
Query: 64 ILVTTRNANNFENSTYDLYMIPKEESERKEVADGKRSTGISAVWV--------------- 108
IL+TTR + + + + + + ++
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE-VKSLLLKYLDCRPQDLPREVLTTN 326
Query: 109 --ARNRFAVLDRNHTILIKNLKNEFC 132
+ A R+ N K+ C
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKHVNC 352
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.2 bits (65), Expect = 0.42
Identities = 8/22 (36%), Positives = 13/22 (59%), Gaps = 5/22 (22%)
Query: 52 AHS-----ISYNATEHSILVTT 68
A+S +S+ + EH +LV T
Sbjct: 3 AYSTRPLTLSHGSLEHVLLVPT 24
Score = 26.6 bits (58), Expect = 3.3
Identities = 24/144 (16%), Positives = 33/144 (22%), Gaps = 69/144 (47%)
Query: 33 LTNSKDSVV------------MQLRGG--------GRIPA------------------HS 54
L N ++V + LR RIP HS
Sbjct: 370 LVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHS 429
Query: 55 ISYNATEHSILVTTRNANNFENSTYDLYMIPKEESERKEV---ADGK--RSTGISAV--- 106
++ NN + D+ IP V DG R S
Sbjct: 430 -HLLVPASDLINKDLVKNNVSFNAKDI-QIP--------VYDTFDGSDLRVLSGSISERI 479
Query: 107 ----------WVARNRFA---VLD 117
W +F +LD
Sbjct: 480 VDCIIRLPVKWETTTQFKATHILD 503
>1s2j_A Peptidoglycan recognition protein SA CG11709-PA; mixed beta-sheet,
PI-helix (ONE turn), hydrolase; 2.20A {Drosophila
melanogaster} SCOP: d.118.1.1
Length = 209
Score = 26.8 bits (59), Expect = 2.1
Identities = 9/33 (27%), Positives = 13/33 (39%), Gaps = 2/33 (6%)
Query: 34 TNSKDSVVMQLRGGGRIPAHSISYNATEHSILV 66
D +V + G G AH+ YNA +
Sbjct: 105 LIGNDGIVYEGTGWGLRGAHTYGYNA--IGTGI 135
>1sxr_A Peptidoglycan recognition protein SA CG11709-PA; pattern
recognition receptor, innate immunity pathway, immune
system; 1.56A {Drosophila melanogaster} SCOP: d.118.1.1
Length = 183
Score = 26.4 bits (58), Expect = 2.5
Identities = 9/33 (27%), Positives = 13/33 (39%), Gaps = 2/33 (6%)
Query: 34 TNSKDSVVMQLRGGGRIPAHSISYNATEHSILV 66
D +V + G G AH+ YNA +
Sbjct: 79 LIGNDGIVYEGTGWGLRGAHTYGYNA--IGTGI 109
>2rkq_A Peptidoglycan-recognition protein-SD; innate immunity, TOLL,
pattern recognition, PGRP, glycoprotein, immune
response, secreted,; 1.50A {Drosophila melanogaster}
Length = 169
Score = 25.9 bits (57), Expect = 3.8
Identities = 5/34 (14%), Positives = 11/34 (32%), Gaps = 2/34 (5%)
Query: 34 TNSKDSVVMQLRGGGRIPAHSISYNATEHSILVT 67
+ V + R + A + N S+ +
Sbjct: 70 LIGGNGKVYEGRSPSQRGAFAGPNND--GSLGIA 101
>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A
{Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A*
2bgm_A*
Length = 278
Score = 26.0 bits (58), Expect = 4.0
Identities = 11/43 (25%), Positives = 15/43 (34%), Gaps = 12/43 (27%)
Query: 41 VMQLRGGGRI------------PAHSISYNATEHSILVTTRNA 71
VM G I S Y AT+H++L T +
Sbjct: 139 VMIPAKKGSIVFTASISSFTAGEGVSHVYTATKHAVLGLTTSL 181
>3ep1_A PGRP-HD - peptidoglycan recognition protein homologue; immune
system, thermophIle, model system; 2.10A {Alvinella
pompejana}
Length = 176
Score = 25.7 bits (56), Expect = 4.7
Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 36 SKDSVVMQLRGGGRIPAHSISYNATEHSILV 66
+D V+ + RG G + H+ ++ HSI V
Sbjct: 85 DQDGVIYEGRGWGVVGQHTKGRDS--HSIGV 113
>2o99_A Acetate operon repressor; ICLR, DNA binding protein; HET: MSE;
1.70A {Escherichia coli} SCOP: d.110.2.2 PDB: 2o9a_A
1td5_A
Length = 182
Score = 25.2 bits (56), Expect = 5.8
Identities = 5/28 (17%), Positives = 12/28 (42%), Gaps = 3/28 (10%)
Query: 27 FLHRLDLTNSKDSVVMQLRGGGRIPAHS 54
+ ++ + M GG++P H+
Sbjct: 40 IIDQVQ---CTHLMRMSAPIGGKLPMHA 64
>2cb3_A Peptidoglycan-recognition protein-LE; PGRP, tracheal cytotoxin,
innate immunity, immune system; HET: MLD; 2.40A
{Drosophila melanogaster} SCOP: d.118.1.1
Length = 175
Score = 25.2 bits (55), Expect = 6.8
Identities = 8/33 (24%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 34 TNSKDSVVMQLRGGGRIPAHSISYNATEHSILV 66
D + + RG + AH++ YN S+ +
Sbjct: 73 LVGCDGNIYEGRGWKTVGAHTLGYNR--ISLGI 103
>1ysp_A Transcriptional regulator KDGR; ICLR, structural genomics,
protein structure initiative, midwest center for
structural genomics, MCSG; 1.80A {Escherichia coli}
Length = 181
Score = 25.2 bits (56), Expect = 7.2
Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 15/47 (31%)
Query: 14 TVH------NNVMYYVKERFLHRLDLTNSKDSVVMQLRGGGRIPAHS 54
T+H ++++Y +H++D S ++ M R G R P +S
Sbjct: 23 TIHLGALDEDSIVY------IHKID---SMYNLRMYSRIGRRNPLYS 60
>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto
reductase; rossmann fold, riken structural
genomics/proteomics initiative, RSGI; 2.00A {Cavia
porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A*
2dm6_A* 1zsv_A 2y05_A*
Length = 333
Score = 25.2 bits (56), Expect = 7.8
Identities = 8/26 (30%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 38 DSVVMQLRGGGRIPA-HSIS-YNATE 61
++V+ Q++ G+I +IS YN +
Sbjct: 228 NTVLSQMKDFGKIAICGAISVYNRMD 253
>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing,
cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A
{Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A*
2w4q_A* 1vj1_A 2zb3_A*
Length = 357
Score = 25.3 bits (56), Expect = 8.3
Identities = 8/26 (30%), Positives = 11/26 (42%), Gaps = 2/26 (7%)
Query: 38 DSVVMQLRGGGRIPA-HSIS-YNATE 61
D+V+ Q+ I IS YN
Sbjct: 244 DTVISQMNENSHIILCGQISQYNKDV 269
>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase
(AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB:
2j3i_A* 2j3j_A* 2j3k_A*
Length = 345
Score = 25.2 bits (56), Expect = 9.0
Identities = 9/26 (34%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 38 DSVVMQLRGGGRIPA-HSIS-YNATE 61
D+V++ + GRI IS YN
Sbjct: 239 DAVLVNMNMHGRIAVCGMISQYNLEN 264
>2xz4_A Peptidoglycan-recognition protein LF; immune system, innate
immunity; HET: 1PG; 1.72A {Drosophila melanogaster}
Length = 180
Score = 24.8 bits (54), Expect = 9.2
Identities = 8/31 (25%), Positives = 9/31 (29%)
Query: 34 TNSKDSVVMQLRGGGRIPAHSISYNATEHSI 64
D + RG H Y A SI
Sbjct: 76 LVGGDGQIYVGRGWHIQGQHVNGYGAISVSI 106
>2f2l_X Peptidoglycan recognition protein-LC isoform LCX;
protein-peptidoglycan complex, membrane protein, immune
SYST; HET: NAG HSQ MLD CIT; 2.10A {Drosophila
melanogaster} SCOP: d.118.1.1
Length = 167
Score = 24.7 bits (54), Expect = 9.9
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 36 SKDSVVMQLRGGGRIPAHSISYNATEHSILV 66
D V + RG + AH+ YN SI +
Sbjct: 71 GGDGRVYEGRGWDYVGAHTKGYNR--GSIGI 99
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.133 0.382
Gapped
Lambda K H
0.267 0.0790 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,930,790
Number of extensions: 97810
Number of successful extensions: 208
Number of sequences better than 10.0: 1
Number of HSP's gapped: 207
Number of HSP's successfully gapped: 34
Length of query: 134
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 51
Effective length of database: 4,384,350
Effective search space: 223601850
Effective search space used: 223601850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (23.7 bits)