RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy74
         (134 letters)



>d2rh3a1 a.43.1.10 (A:82-202) VirC2 {Agrobacterium tumefaciens
           [TaxId: 358]}
          Length = 121

 Score = 25.4 bits (55), Expect = 2.0
 Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 17/82 (20%)

Query: 49  RIPAHSIS---------YNATEHSILVTTRNANNFENSTYD--------LYMIPKEESER 91
           R PA  +S         Y+ ++   ++  R   +FEN   D         Y IP    E+
Sbjct: 8   RPPAPEVSKIYDNLILQYSPSKSLQMILRRALGDFENMLADGSFRAAPKSYPIPHTAFEK 67

Query: 92  KEVADGKRSTGISAVWVARNRF 113
             +    R   +S +  ARN F
Sbjct: 68  SIIVQTSRMFPVSLIEAARNHF 89


>d2vjma1 c.123.1.1 (A:2-428) Formyl-CoA transferase {Oxalobacter
           formigenes [TaxId: 847]}
          Length = 427

 Score = 24.5 bits (52), Expect = 5.9
 Identities = 8/41 (19%), Positives = 14/41 (34%)

Query: 90  ERKEVADGKRSTGISAVWVARNRFAVLDRNHTILIKNLKNE 130
           ER+   D  R        V    F + + N   +  ++K  
Sbjct: 36  ERRGSGDMTRGWLQDKPNVDSLYFTMFNCNKRSIELDMKTP 76


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.133    0.382 

Gapped
Lambda     K      H
   0.267   0.0437    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 465,893
Number of extensions: 17767
Number of successful extensions: 41
Number of sequences better than 10.0: 1
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 4
Length of query: 134
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 58
Effective length of database: 1,364,116
Effective search space: 79118728
Effective search space used: 79118728
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.0 bits)