Query psy740
Match_columns 763
No_of_seqs 335 out of 2632
Neff 8.4
Searched_HMMs 46136
Date Fri Aug 16 17:15:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy740.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/740hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0103|consensus 100.0 9E-119 2E-123 971.5 57.8 663 4-717 1-727 (727)
2 KOG0100|consensus 100.0 7E-112 2E-116 858.9 52.6 546 4-620 36-643 (663)
3 KOG0104|consensus 100.0 3E-102 7E-107 842.0 59.5 705 3-717 21-836 (902)
4 PTZ00009 heat shock 70 kDa pro 100.0 9.6E-93 2.1E-97 825.7 64.6 549 1-619 1-613 (653)
5 PRK13410 molecular chaperone D 100.0 1.2E-90 2.5E-95 804.5 62.2 556 4-636 2-621 (668)
6 PTZ00400 DnaK-type molecular c 100.0 1.6E-88 3.5E-93 789.4 63.0 533 4-618 41-636 (663)
7 PRK13411 molecular chaperone D 100.0 8.4E-88 1.8E-92 783.2 64.4 534 4-619 2-600 (653)
8 PRK00290 dnaK molecular chaper 100.0 1.8E-86 4E-91 773.3 65.9 533 4-620 2-597 (627)
9 PLN03184 chloroplast Hsp70; Pr 100.0 1.8E-86 3.8E-91 772.5 61.6 533 4-618 39-634 (673)
10 PTZ00186 heat shock 70 kDa pre 100.0 1.8E-85 4E-90 757.5 64.3 534 4-617 27-622 (657)
11 CHL00094 dnaK heat shock prote 100.0 1.7E-85 3.8E-90 762.6 63.1 533 4-618 2-597 (621)
12 TIGR02350 prok_dnaK chaperone 100.0 5.7E-85 1.2E-89 758.7 64.0 528 5-617 1-592 (595)
13 KOG0101|consensus 100.0 2E-86 4.4E-91 729.6 46.1 548 2-621 5-615 (620)
14 TIGR01991 HscA Fe-S protein as 100.0 5.2E-82 1.1E-86 728.8 64.3 522 6-616 1-581 (599)
15 PF00012 HSP70: Hsp70 protein; 100.0 3.3E-82 7.1E-87 742.4 56.5 540 6-619 1-601 (602)
16 PRK05183 hscA chaperone protei 100.0 1.4E-80 3.1E-85 718.2 61.5 521 5-617 20-598 (616)
17 KOG0102|consensus 100.0 2.8E-78 6E-83 636.9 39.8 531 5-615 28-622 (640)
18 PRK01433 hscA chaperone protei 100.0 1E-74 2.3E-79 663.1 59.8 496 5-614 20-573 (595)
19 COG0443 DnaK Molecular chapero 100.0 4.2E-73 9.1E-78 646.0 51.1 513 4-619 5-577 (579)
20 PRK11678 putative chaperone; P 100.0 5.7E-44 1.2E-48 396.1 29.9 284 6-326 2-448 (450)
21 PRK13928 rod shape-determining 100.0 1.2E-28 2.7E-33 267.3 28.3 261 6-326 5-324 (336)
22 PRK13929 rod-share determining 100.0 3.2E-28 6.8E-33 263.4 28.5 261 3-323 3-324 (335)
23 PRK13927 rod shape-determining 99.9 1E-25 2.3E-30 244.7 28.0 262 4-326 5-325 (334)
24 TIGR00904 mreB cell shape dete 99.9 1.4E-25 3.1E-30 243.2 27.1 260 6-325 4-327 (333)
25 PRK13930 rod shape-determining 99.9 4.4E-25 9.5E-30 240.0 26.2 262 5-326 9-329 (335)
26 PF06723 MreB_Mbl: MreB/Mbl pr 99.9 5.4E-22 1.2E-26 210.0 15.3 261 5-325 2-321 (326)
27 COG1077 MreB Actin-like ATPase 99.8 3.6E-18 7.9E-23 173.6 20.8 264 4-327 6-333 (342)
28 TIGR02529 EutJ ethanolamine ut 99.8 4.8E-19 1E-23 181.9 13.3 160 115-321 36-238 (239)
29 PRK15080 ethanolamine utilizat 99.8 1.3E-17 2.7E-22 174.4 20.6 159 118-323 66-267 (267)
30 TIGR01174 ftsA cell division p 99.5 7.4E-13 1.6E-17 146.0 18.9 130 171-322 223-371 (371)
31 PRK09472 ftsA cell division pr 99.4 2.9E-11 6.2E-16 135.1 21.0 133 172-325 232-388 (420)
32 cd00012 ACTIN Actin; An ubiqui 99.0 3.9E-09 8.5E-14 116.6 13.4 193 119-325 75-347 (371)
33 smart00268 ACTIN Actin. ACTIN 98.8 2.3E-08 4.9E-13 110.6 11.6 255 5-325 2-347 (373)
34 COG0849 ftsA Cell division ATP 98.7 1.3E-06 2.8E-11 95.7 20.2 163 143-326 158-381 (418)
35 PTZ00280 Actin-related protein 98.6 1.3E-06 2.7E-11 97.9 19.5 239 1-302 1-337 (414)
36 PRK13917 plasmid segregation p 98.5 6.3E-06 1.4E-10 89.6 20.5 76 246-328 264-339 (344)
37 PF00022 Actin: Actin; InterP 98.4 2.5E-06 5.5E-11 95.0 12.9 266 4-326 4-368 (393)
38 PTZ00281 actin; Provisional 98.2 8.6E-06 1.9E-10 89.9 11.3 173 141-325 102-350 (376)
39 PTZ00452 actin; Provisional 98.1 5.7E-05 1.2E-09 83.3 16.2 188 120-324 81-348 (375)
40 PTZ00004 actin-2; Provisional 98.1 2.8E-05 6.1E-10 86.0 13.1 191 119-324 81-351 (378)
41 PTZ00466 actin-like protein; P 98.1 4.3E-05 9.4E-10 84.3 13.6 190 120-324 88-353 (380)
42 COG4820 EutJ Ethanolamine util 97.7 2.6E-05 5.6E-10 74.6 2.7 65 252-321 206-270 (277)
43 PF07520 SrfB: Virulence facto 97.3 0.025 5.3E-07 67.6 22.4 82 238-324 729-833 (1002)
44 PF11104 PilM_2: Type IV pilus 97.3 0.00092 2E-08 72.9 9.2 112 171-323 207-339 (340)
45 TIGR03739 PRTRC_D PRTRC system 97.3 0.013 2.9E-07 63.2 17.9 46 276-323 272-318 (320)
46 COG5277 Actin and related prot 96.9 0.016 3.5E-07 64.8 14.9 47 278-324 363-417 (444)
47 PF02782 FGGY_C: FGGY family o 96.7 0.0016 3.4E-08 65.0 4.4 47 278-325 150-196 (198)
48 TIGR03192 benz_CoA_bzdQ benzoy 96.4 0.0089 1.9E-07 62.5 7.8 47 279-325 241-288 (293)
49 TIGR00241 CoA_E_activ CoA-subs 96.4 0.0072 1.6E-07 62.8 7.2 68 250-322 180-248 (248)
50 PRK15027 xylulokinase; Provisi 96.4 0.0084 1.8E-07 68.7 7.9 82 245-330 357-439 (484)
51 TIGR01175 pilM type IV pilus a 96.2 0.02 4.4E-07 62.6 9.7 73 251-323 254-347 (348)
52 COG4972 PilM Tfp pilus assembl 96.1 0.24 5.1E-06 52.1 16.2 54 251-304 259-314 (354)
53 PLN02669 xylulokinase 96.1 0.013 2.9E-07 68.0 7.9 70 254-325 423-492 (556)
54 TIGR01315 5C_CHO_kinase FGGY-f 96.1 0.016 3.4E-07 67.4 8.3 84 245-329 411-494 (541)
55 TIGR03286 methan_mark_15 putat 95.7 0.025 5.5E-07 61.6 7.1 46 279-324 357-402 (404)
56 TIGR01312 XylB D-xylulose kina 95.6 0.035 7.5E-07 63.7 8.4 53 277-330 390-442 (481)
57 TIGR01234 L-ribulokinase L-rib 95.5 0.037 8.1E-07 64.3 8.5 80 245-329 406-487 (536)
58 PRK00047 glpK glycerol kinase; 95.5 0.03 6.5E-07 64.5 7.5 51 278-329 404-454 (498)
59 TIGR01311 glycerol_kin glycero 95.5 0.025 5.5E-07 65.0 6.9 52 277-329 399-450 (493)
60 COG1924 Activator of 2-hydroxy 95.3 0.05 1.1E-06 58.0 7.5 72 250-325 318-390 (396)
61 TIGR02259 benz_CoA_red_A benzo 95.3 0.05 1.1E-06 58.8 7.6 45 279-323 383-432 (432)
62 TIGR02628 fuculo_kin_coli L-fu 95.2 0.039 8.5E-07 62.9 7.2 52 277-329 393-444 (465)
63 KOG2531|consensus 95.2 0.045 9.7E-07 59.4 6.8 55 270-325 435-489 (545)
64 PRK04123 ribulokinase; Provisi 95.2 0.039 8.5E-07 64.3 7.1 52 277-329 438-490 (548)
65 PTZ00294 glycerol kinase-like 95.1 0.06 1.3E-06 62.1 8.3 52 278-330 407-458 (504)
66 KOG2517|consensus 95.1 0.063 1.4E-06 60.3 7.9 73 254-330 394-466 (516)
67 TIGR02261 benz_CoA_red_D benzo 95.0 0.098 2.1E-06 54.1 8.6 45 279-323 213-262 (262)
68 PLN02295 glycerol kinase 95.0 0.052 1.1E-06 62.7 7.4 53 277-330 412-464 (512)
69 PRK10331 L-fuculokinase; Provi 95.0 0.052 1.1E-06 62.0 7.3 53 277-330 389-441 (470)
70 TIGR01314 gntK_FGGY gluconate 94.9 0.068 1.5E-06 61.7 8.0 52 277-329 401-452 (505)
71 PRK10640 rhaB rhamnulokinase; 94.8 0.099 2.2E-06 59.7 9.0 52 277-330 375-426 (471)
72 TIGR02627 rhamnulo_kin rhamnul 94.8 0.059 1.3E-06 61.3 7.1 52 277-330 387-438 (454)
73 PRK10939 autoinducer-2 (AI-2) 94.6 0.1 2.2E-06 60.5 8.4 51 278-329 410-460 (520)
74 COG1070 XylB Sugar (pentulose 93.7 0.21 4.5E-06 57.6 8.6 50 277-327 401-450 (502)
75 COG1069 AraB Ribulose kinase [ 93.6 0.26 5.7E-06 55.1 8.6 63 264-330 421-483 (544)
76 KOG0679|consensus 93.4 4.5 9.8E-05 43.5 16.9 71 119-190 86-202 (426)
77 PRK13317 pantothenate kinase; 93.4 0.22 4.8E-06 52.3 7.5 48 277-324 222-273 (277)
78 KOG0676|consensus 93.2 0.69 1.5E-05 50.3 10.9 27 275-301 288-314 (372)
79 KOG0100|consensus 92.1 0.73 1.6E-05 49.4 9.0 50 653-715 591-640 (663)
80 PTZ00009 heat shock 70 kDa pro 90.1 2.9 6.3E-05 49.8 12.7 72 627-715 540-611 (653)
81 KOG0677|consensus 88.5 3.4 7.4E-05 41.9 9.7 119 173-301 180-318 (389)
82 KOG0681|consensus 88.0 0.5 1.1E-05 52.5 3.9 67 259-325 538-614 (645)
83 PF06406 StbA: StbA protein; 86.1 1.7 3.8E-05 46.8 6.8 68 247-320 246-316 (318)
84 PTZ00400 DnaK-type molecular c 85.4 5.3 0.00011 47.7 11.0 67 627-715 569-635 (663)
85 PRK00290 dnaK molecular chaper 84.5 5.2 0.00011 47.5 10.4 67 627-715 528-594 (627)
86 TIGR02350 prok_dnaK chaperone 83.6 5.8 0.00013 46.8 10.3 67 627-715 526-592 (595)
87 smart00842 FtsA Cell division 83.4 5.1 0.00011 39.5 8.2 37 114-151 42-78 (187)
88 COG0554 GlpK Glycerol kinase [ 81.9 4.1 9E-05 45.3 7.4 67 259-329 387-453 (499)
89 PRK13411 molecular chaperone D 80.9 10 0.00022 45.3 10.9 69 627-715 530-598 (653)
90 PF01869 BcrAD_BadFG: BadF/Bad 80.6 5.3 0.00011 41.9 7.7 69 252-323 198-271 (271)
91 TIGR03281 methan_mark_12 putat 80.4 6.8 0.00015 41.1 7.9 85 243-329 222-315 (326)
92 COG1070 XylB Sugar (pentulose 79.4 2 4.2E-05 49.6 4.2 24 1-24 1-24 (502)
93 smart00732 YqgFc Likely ribonu 79.3 1.7 3.6E-05 37.7 2.8 20 4-23 1-20 (99)
94 PF03702 UPF0075: Uncharacteri 77.9 7.2 0.00016 42.7 7.7 70 250-324 260-336 (364)
95 PLN03184 chloroplast Hsp70; Pr 77.6 31 0.00067 41.4 13.6 64 629-714 569-632 (673)
96 PRK00109 Holliday junction res 77.0 2.5 5.4E-05 39.5 3.4 24 1-24 1-24 (138)
97 PRK09585 anmK anhydro-N-acetyl 76.5 11 0.00025 41.1 8.8 67 255-324 267-337 (365)
98 PF03652 UPF0081: Uncharacteri 74.8 3 6.5E-05 38.8 3.3 21 4-24 1-21 (135)
99 CHL00094 dnaK heat shock prote 74.2 18 0.00038 43.0 10.4 65 629-715 532-596 (621)
100 PF00370 FGGY_N: FGGY family o 74.0 2.9 6.2E-05 43.1 3.3 19 6-24 2-20 (245)
101 TIGR00555 panK_eukar pantothen 72.9 6.6 0.00014 41.3 5.6 46 276-321 229-278 (279)
102 KOG0101|consensus 72.5 11 0.00023 43.9 7.5 50 653-715 562-611 (620)
103 PRK00047 glpK glycerol kinase; 71.1 3.3 7.2E-05 47.7 3.3 24 1-24 1-25 (498)
104 PRK02224 chromosome segregatio 70.0 2.4E+02 0.0053 34.9 19.6 114 515-633 145-258 (880)
105 KOG0104|consensus 69.5 34 0.00074 40.3 10.5 96 597-713 636-732 (902)
106 TIGR03192 benz_CoA_bzdQ benzoy 66.9 5 0.00011 42.3 3.2 21 4-24 32-52 (293)
107 PRK10939 autoinducer-2 (AI-2) 66.8 4.6 9.9E-05 46.8 3.2 21 4-24 3-23 (520)
108 KOG0681|consensus 66.7 36 0.00078 38.5 9.7 22 2-23 21-42 (645)
109 PLN02939 transferase, transfer 66.1 2.9E+02 0.0062 34.4 17.9 181 518-705 239-426 (977)
110 TIGR00241 CoA_E_activ CoA-subs 65.5 4.8 0.0001 41.6 2.8 19 6-24 2-20 (248)
111 PRK04123 ribulokinase; Provisi 64.4 6.1 0.00013 46.1 3.7 19 4-22 3-21 (548)
112 PRK00976 hypothetical protein; 64.0 20 0.00044 38.4 7.1 51 277-329 263-315 (326)
113 PRK03011 butyrate kinase; Prov 63.8 12 0.00026 41.0 5.5 46 277-322 295-344 (358)
114 PF07318 DUF1464: Protein of u 63.1 18 0.00039 38.9 6.5 55 275-329 258-319 (343)
115 PTZ00294 glycerol kinase-like 61.3 6.4 0.00014 45.4 3.1 21 5-25 3-23 (504)
116 COG0816 Predicted endonuclease 60.3 8.5 0.00018 36.0 3.1 22 3-24 1-22 (141)
117 PF14450 FtsA: Cell division p 60.0 12 0.00027 33.8 4.1 20 6-25 1-20 (120)
118 PF00012 HSP70: Hsp70 protein; 59.8 56 0.0012 38.5 10.8 69 626-715 531-599 (602)
119 PRK10331 L-fuculokinase; Provi 59.5 7 0.00015 44.6 3.0 20 5-24 3-22 (470)
120 TIGR00143 hypF [NiFe] hydrogen 58.3 22 0.00048 42.7 6.9 48 277-324 658-711 (711)
121 TIGR01234 L-ribulokinase L-rib 58.1 8.6 0.00019 44.7 3.5 18 5-22 2-19 (536)
122 TIGR02628 fuculo_kin_coli L-fu 58.0 7.7 0.00017 44.2 3.0 20 5-24 2-21 (465)
123 KOG4603|consensus 57.3 1.6E+02 0.0035 28.2 10.8 77 597-676 88-170 (201)
124 COG1924 Activator of 2-hydroxy 57.2 12 0.00025 40.6 3.8 25 1-25 132-156 (396)
125 PRK15027 xylulokinase; Provisi 57.0 7.8 0.00017 44.4 2.8 19 6-24 2-20 (484)
126 PRK13317 pantothenate kinase; 56.8 12 0.00027 39.3 4.0 23 3-25 1-23 (277)
127 TIGR01315 5C_CHO_kinase FGGY-f 54.0 11 0.00024 43.9 3.4 20 5-24 1-20 (541)
128 PRK00039 ruvC Holliday junctio 53.7 9.7 0.00021 36.7 2.4 20 3-22 1-20 (164)
129 TIGR01314 gntK_FGGY gluconate 53.5 11 0.00023 43.5 3.2 19 6-24 2-20 (505)
130 PLN02295 glycerol kinase 53.3 9.8 0.00021 44.0 2.9 18 6-23 2-19 (512)
131 PF08841 DDR: Diol dehydratase 52.5 12 0.00026 38.8 2.9 50 274-323 272-329 (332)
132 PLN02377 3-ketoacyl-CoA syntha 52.0 30 0.00064 39.7 6.3 72 250-321 166-241 (502)
133 PRK01433 hscA chaperone protei 51.0 1.4E+02 0.003 35.3 11.8 71 630-715 513-584 (595)
134 PRK05183 hscA chaperone protei 50.7 1E+02 0.0022 36.6 10.8 63 630-714 535-597 (616)
135 PRK09604 UGMP family protein; 50.6 29 0.00064 37.6 5.8 60 259-323 241-306 (332)
136 TIGR01311 glycerol_kin glycero 50.2 12 0.00025 43.1 2.8 20 5-24 2-21 (493)
137 COG4457 SrfB Uncharacterized p 50.2 50 0.0011 38.3 7.4 82 240-326 743-847 (1014)
138 cd00529 RuvC_resolvase Hollida 49.4 20 0.00044 34.1 3.9 17 6-22 2-18 (154)
139 PF02543 CmcH_NodU: Carbamoylt 48.9 44 0.00095 36.7 6.9 81 243-328 132-216 (360)
140 COG5026 Hexokinase [Carbohydra 48.8 33 0.0007 38.0 5.6 19 4-22 75-93 (466)
141 KOG0994|consensus 48.6 6.6E+02 0.014 31.7 18.8 21 541-561 1466-1486(1758)
142 TIGR02259 benz_CoA_red_A benzo 48.1 15 0.00032 40.3 2.9 21 5-25 3-23 (432)
143 PF02801 Ketoacyl-synt_C: Beta 47.2 23 0.0005 31.9 3.7 47 257-303 24-72 (119)
144 PRK13318 pantothenate kinase; 46.3 19 0.00041 37.5 3.4 47 244-290 181-227 (258)
145 PRK13321 pantothenate kinase; 45.9 20 0.00042 37.3 3.4 20 6-25 2-21 (256)
146 TIGR02261 benz_CoA_red_D benzo 45.9 24 0.00051 36.8 3.9 18 6-23 3-20 (262)
147 COG1548 Predicted transcriptio 45.4 12 0.00027 38.1 1.7 40 252-298 258-297 (330)
148 PF07106 TBPIP: Tat binding pr 44.2 2.3E+02 0.0049 27.3 10.4 91 568-677 68-164 (169)
149 PRK10719 eutA reactivating fac 43.9 85 0.0018 35.4 8.0 41 6-51 8-48 (475)
150 PRK13410 molecular chaperone D 43.7 1.5E+02 0.0032 35.6 10.8 24 653-676 554-577 (668)
151 TIGR03723 bact_gcp putative gl 43.7 38 0.00083 36.4 5.3 57 259-320 246-308 (314)
152 TIGR03286 methan_mark_15 putat 43.5 20 0.00044 39.5 3.1 21 4-24 144-164 (404)
153 PRK13320 pantothenate kinase; 42.8 25 0.00054 36.3 3.6 21 5-25 3-23 (244)
154 PRK13331 pantothenate kinase; 41.6 30 0.00064 35.9 3.9 23 3-25 6-28 (251)
155 PLN02669 xylulokinase 40.3 25 0.00055 41.1 3.5 21 4-24 8-28 (556)
156 PF06277 EutA: Ethanolamine ut 39.9 45 0.00098 37.5 5.2 42 5-51 4-45 (473)
157 PLN03237 DNA topoisomerase 2; 39.6 1.1E+02 0.0025 39.4 9.0 40 629-670 1129-1168(1465)
158 PF10168 Nup88: Nuclear pore c 39.4 7.7E+02 0.017 29.8 17.1 27 599-625 583-609 (717)
159 TIGR01991 HscA Fe-S protein as 39.0 2.4E+02 0.0052 33.3 11.5 45 654-714 537-581 (599)
160 PF13941 MutL: MutL protein 38.4 23 0.00051 39.9 2.7 42 6-53 2-45 (457)
161 PF04848 Pox_A22: Poxvirus A22 38.3 43 0.00093 31.4 4.0 20 4-23 1-20 (143)
162 PRK13326 pantothenate kinase; 38.1 31 0.00067 36.0 3.4 22 4-25 6-27 (262)
163 PLN03170 chalcone synthase; Pr 38.0 77 0.0017 35.4 6.8 50 256-305 106-156 (401)
164 PLN03173 chalcone synthase; Pr 37.5 80 0.0017 35.1 6.8 49 257-305 103-152 (391)
165 PLN02854 3-ketoacyl-CoA syntha 37.3 67 0.0014 37.0 6.2 46 259-304 191-237 (521)
166 PF11593 Med3: Mediator comple 36.2 1.5E+02 0.0032 32.1 8.0 43 580-624 9-51 (379)
167 COG3143 CheZ Chemotaxis protei 36.2 4E+02 0.0086 26.0 10.0 75 552-646 51-125 (217)
168 PRK09605 bifunctional UGMP fam 35.1 78 0.0017 36.8 6.6 65 258-327 231-301 (535)
169 PF00349 Hexokinase_1: Hexokin 35.0 35 0.00076 34.2 3.1 18 5-22 64-81 (206)
170 KOG0250|consensus 34.9 1E+03 0.022 29.9 16.8 11 579-589 298-308 (1074)
171 PRK04863 mukB cell division pr 34.3 1.2E+03 0.027 30.8 21.0 27 245-271 193-220 (1486)
172 PLN03172 chalcone synthase fam 34.1 87 0.0019 34.9 6.4 50 256-305 102-152 (393)
173 TIGR02707 butyr_kinase butyrat 33.7 55 0.0012 35.8 4.7 45 277-321 293-341 (351)
174 PHA02557 22 prohead core prote 33.7 3.9E+02 0.0084 27.7 10.2 80 521-615 143-223 (271)
175 KOG0680|consensus 33.6 49 0.0011 35.1 3.9 31 1-32 1-31 (400)
176 TIGR03185 DNA_S_dndD DNA sulfu 32.9 9.1E+02 0.02 28.8 15.4 47 514-560 368-415 (650)
177 COG4296 Uncharacterized protei 32.8 76 0.0017 29.0 4.5 23 583-605 90-112 (156)
178 PF15043 CNRIP1: CB1 cannabino 32.1 4.6E+02 0.0099 25.1 9.9 39 400-438 80-118 (161)
179 PRK07515 3-oxoacyl-(acyl carri 31.9 73 0.0016 35.0 5.4 48 253-302 266-313 (372)
180 PLN02192 3-ketoacyl-CoA syntha 31.5 1.1E+02 0.0023 35.3 6.6 55 250-304 170-225 (511)
181 KOG0964|consensus 31.5 1.1E+03 0.024 29.3 17.1 37 623-659 322-358 (1200)
182 KOG0964|consensus 31.4 1.1E+03 0.024 29.3 17.3 49 668-716 331-379 (1200)
183 PLN03168 chalcone synthase; Pr 31.4 95 0.0021 34.5 6.1 51 255-305 100-151 (389)
184 COG3513 Predicted CRISPR-assoc 31.2 20 0.00044 42.3 0.8 74 1-75 1-81 (1088)
185 PLN00130 succinate dehydrogena 31.2 6.8 0.00015 37.4 -2.4 20 4-23 57-76 (213)
186 KOG0996|consensus 31.0 1.2E+03 0.026 29.6 17.1 85 599-683 374-472 (1293)
187 TIGR00250 RNAse_H_YqgF RNAse H 30.9 32 0.00068 31.8 1.9 17 7-23 1-17 (130)
188 KOG2910|consensus 30.7 5.3E+02 0.011 25.3 19.6 93 606-717 81-173 (209)
189 KOG1656|consensus 30.1 5.6E+02 0.012 25.5 15.3 68 654-723 120-189 (221)
190 PF06840 DUF1241: Protein of u 30.0 4.9E+02 0.011 24.8 10.0 104 606-715 12-142 (154)
191 PRK00292 glk glucokinase; Prov 29.8 48 0.001 35.6 3.4 18 5-22 3-20 (316)
192 PRK11166 chemotaxis regulator 29.7 4.7E+02 0.01 26.4 10.0 65 606-689 82-146 (214)
193 COG4052 Uncharacterized protei 29.6 1.3E+02 0.0027 30.4 5.7 53 657-710 195-247 (310)
194 PF08580 KAR9: Yeast cortical 29.6 8.6E+02 0.019 29.3 13.8 46 657-703 129-175 (683)
195 PF06008 Laminin_I: Laminin Do 29.4 6.6E+02 0.014 26.0 14.2 88 591-679 116-206 (264)
196 PRK12408 glucokinase; Provisio 29.3 39 0.00084 36.7 2.6 19 5-23 17-35 (336)
197 TIGR00067 glut_race glutamate 29.3 1.1E+02 0.0024 31.6 5.8 41 277-320 172-212 (251)
198 KOG0517|consensus 29.0 1.6E+03 0.034 30.3 16.4 140 573-714 852-1005(2473)
199 PRK09557 fructokinase; Reviewe 28.9 83 0.0018 33.3 5.0 47 277-323 244-299 (301)
200 PF08392 FAE1_CUT1_RppA: FAE1/ 28.6 1.5E+02 0.0032 31.4 6.5 45 260-304 87-132 (290)
201 TIGR03185 DNA_S_dndD DNA sulfu 28.5 1.1E+03 0.023 28.2 14.7 102 574-683 400-501 (650)
202 KOG2004|consensus 28.5 4.4E+02 0.0096 31.6 10.7 132 523-661 267-401 (906)
203 PF03484 B5: tRNA synthetase B 27.9 1.6E+02 0.0035 23.6 5.4 59 67-126 8-66 (70)
204 COG3426 Butyrate kinase [Energ 27.9 96 0.0021 32.4 4.8 49 273-321 292-344 (358)
205 PF06008 Laminin_I: Laminin Do 27.2 7.2E+02 0.016 25.7 13.2 77 544-623 128-213 (264)
206 PHA00726 hypothetical protein 27.1 82 0.0018 26.4 3.4 28 697-724 10-37 (89)
207 COG4020 Uncharacterized protei 27.0 61 0.0013 33.1 3.2 53 275-329 266-321 (332)
208 PRK04778 septation ring format 26.5 1.1E+03 0.024 27.6 15.9 169 514-711 340-508 (569)
209 KOG1029|consensus 26.4 1.2E+03 0.026 28.1 17.1 12 364-375 259-270 (1118)
210 TIGR02627 rhamnulo_kin rhamnul 26.3 33 0.00072 38.9 1.4 17 7-23 1-17 (454)
211 PRK03918 chromosome segregatio 25.9 1.3E+03 0.029 28.4 17.7 12 282-293 27-40 (880)
212 PF01548 DEDD_Tnp_IS110: Trans 25.7 84 0.0018 29.1 3.9 20 6-25 1-20 (144)
213 COG0533 QRI7 Metal-dependent p 25.7 99 0.0021 33.4 4.7 83 243-326 228-312 (342)
214 TIGR01865 cas_Csn1 CRISPR-asso 25.2 40 0.00087 41.2 1.9 20 5-24 2-21 (805)
215 PF08006 DUF1700: Protein of u 24.9 2.1E+02 0.0046 27.8 6.7 57 550-616 5-62 (181)
216 TIGR01312 XylB D-xylulose kina 24.7 40 0.00087 38.5 1.8 17 7-23 1-17 (481)
217 cd00327 cond_enzymes Condensin 24.5 2.1E+02 0.0046 29.0 7.0 45 260-304 11-57 (254)
218 PLN00415 3-ketoacyl-CoA syntha 24.5 1.4E+02 0.0031 33.8 5.9 62 260-321 138-203 (466)
219 cd06007 R3H_DEXH_helicase R3H 24.5 1.7E+02 0.0038 22.9 4.7 32 131-164 7-38 (59)
220 KOG0797|consensus 24.4 22 0.00049 39.8 -0.4 50 278-327 527-591 (618)
221 COG2410 Predicted nuclease (RN 24.2 1.1E+02 0.0024 29.3 4.1 31 4-34 1-32 (178)
222 PF02075 RuvC: Crossover junct 24.2 35 0.00075 32.3 0.9 17 6-22 1-17 (149)
223 PRK05082 N-acetylmannosamine k 24.2 1E+02 0.0022 32.5 4.6 47 277-323 233-286 (291)
224 TIGR00671 baf pantothenate kin 24.1 70 0.0015 33.0 3.2 47 244-290 173-219 (243)
225 KOG3973|consensus 24.1 9.2E+02 0.02 26.0 11.1 38 521-560 44-81 (465)
226 PRK13310 N-acetyl-D-glucosamin 23.8 1.4E+02 0.003 31.7 5.5 47 277-323 245-300 (303)
227 PF09286 Pro-kuma_activ: Pro-k 23.6 1.2E+02 0.0025 28.3 4.4 47 545-593 26-76 (143)
228 PF14574 DUF4445: Domain of un 23.6 1.9E+02 0.0041 32.3 6.6 61 237-298 288-348 (412)
229 KOG2517|consensus 23.4 71 0.0015 36.5 3.3 19 4-22 6-24 (516)
230 COG1521 Pantothenate kinase ty 23.3 76 0.0016 32.8 3.2 45 246-290 181-225 (251)
231 COG2377 Predicted molecular ch 22.8 1.8E+02 0.0039 31.7 6.0 54 273-326 286-344 (371)
232 PTZ00340 O-sialoglycoprotein e 22.7 95 0.0021 33.8 4.0 51 250-301 237-287 (345)
233 PRK13690 hypothetical protein; 22.7 3.4E+02 0.0073 26.4 7.0 46 255-312 5-50 (184)
234 TIGR03190 benz_CoA_bzdN benzoy 22.5 7.1E+02 0.015 27.4 11.0 64 624-697 129-192 (377)
235 PRK10719 eutA reactivating fac 22.5 2.1E+02 0.0045 32.5 6.6 70 258-328 66-142 (475)
236 PRK06840 hypothetical protein; 22.4 1.3E+02 0.0028 32.5 5.1 48 257-304 54-104 (339)
237 PRK00865 glutamate racemase; P 22.4 2E+02 0.0043 29.9 6.3 43 277-322 177-219 (261)
238 PF12401 DUF3662: Protein of u 22.2 4E+02 0.0086 24.0 7.3 94 180-283 5-101 (116)
239 TIGR00744 ROK_glcA_fam ROK fam 22.0 78 0.0017 33.8 3.2 68 255-323 230-308 (318)
240 PRK13324 pantothenate kinase; 22.0 87 0.0019 32.6 3.4 20 6-25 2-21 (258)
241 PRK06328 type III secretion sy 21.6 8.5E+02 0.018 24.6 13.1 63 653-720 136-211 (223)
242 PRK14878 UGMP family protein; 21.6 1.8E+02 0.0038 31.4 5.9 69 251-326 220-294 (323)
243 PHA02557 22 prohead core prote 21.6 9.3E+02 0.02 25.1 13.4 19 696-714 206-224 (271)
244 PTZ00186 heat shock 70 kDa pre 21.4 4.1E+02 0.0089 31.8 9.3 67 628-715 556-622 (657)
245 PF03309 Pan_kinase: Type III 21.1 92 0.002 31.1 3.3 21 6-26 1-21 (206)
246 TIGR03274 methan_mark_7 putati 21.0 1.3E+02 0.0029 31.1 4.3 52 657-709 191-242 (302)
247 PF08317 Spc7: Spc7 kinetochor 20.8 1.1E+03 0.023 25.4 15.6 12 655-666 273-284 (325)
248 PRK12879 3-oxoacyl-(acyl carri 20.8 1.9E+02 0.0042 30.8 6.0 48 254-304 221-268 (325)
249 TIGR00555 panK_eukar pantothen 20.8 1E+02 0.0022 32.5 3.7 18 5-22 1-18 (279)
250 PRK10807 paraquat-inducible pr 20.7 5.1E+02 0.011 30.2 9.7 58 658-716 469-527 (547)
251 PRK03918 chromosome segregatio 20.6 1.6E+03 0.035 27.6 15.0 64 569-634 656-719 (880)
252 TIGR02169 SMC_prok_A chromosom 20.4 1.8E+03 0.04 28.1 18.1 45 515-559 149-193 (1164)
253 PF07361 Cytochrom_B562: Cytoc 20.4 5.9E+02 0.013 22.3 8.1 44 657-713 59-102 (103)
254 smart00787 Spc7 Spc7 kinetocho 20.3 1.1E+03 0.023 25.3 14.8 18 653-670 266-283 (312)
No 1
>KOG0103|consensus
Probab=100.00 E-value=8.7e-119 Score=971.46 Aligned_cols=663 Identities=48% Similarity=0.772 Sum_probs=620.8
Q ss_pred cceEEEEcCccceEEEEEECCceeEEcCCCCCccccEEEEeeCCceEEcHHHHHhHhhccCchHHHhhhhhCCCCCChHH
Q psy740 4 MSVIGIDFGNESCFIAAARAGGIETIANDYSLRATPSCVAFSDRNRILGVAAKNQTVTNMKNTIHGFKRLIGREFKDPHV 83 (763)
Q Consensus 4 ~~viGID~GTt~s~va~~~~g~~~iv~n~~~~r~~PS~V~~~~~~~~~G~~A~~~~~~~p~~~~~~~KrllG~~~~d~~~ 83 (763)
|+++|||||+.||.+|+++.|++++|.|+.|.|.||++|+|+.++|++|.+|.++..+|++|++..+|||+|+.|+||.+
T Consensus 1 msvvG~D~Gn~nc~iavAr~~gIe~i~nd~Snr~TPa~vsfg~K~R~~G~aak~~~~~n~kntv~~~KRl~Gr~f~dP~~ 80 (727)
T KOG0103|consen 1 MSVVGFDLGNENCYIAVARQGGIEVVANDYSNRETPAIVSFGPKNRFIGVAAKNQQTTNVKNTVSNFKRLIGRKFSDPEV 80 (727)
T ss_pred CCceeeeccccceeeeeeccCCceeeeeccccccCcceeeeccccceeeeccccceeecccccchhhhhhhccccCChHh
Confidence 45999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhcCCceeeeCCCCCeEEEEEecCCceeeCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEeecccCCHHHHHHHHHHH
Q psy740 84 QDELKFLPYNVSENPDGSIGIKVKYLNEDRVFTPEQITAMLLTKLRETSEIALQCNISDCVLSVPSFYTNAERKALLDAA 163 (763)
Q Consensus 84 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~peev~a~~L~~lk~~ae~~~~~~v~~~VITVPa~f~~~qR~al~~Aa 163 (763)
|...+++||.++..+||.+++.+.|.|+.+.|+|++|+||+|.+|+..|+..+..++.+|||+||+||++.||+++++||
T Consensus 81 q~~~~~~~~~vv~~~dg~vgi~v~ylge~~~ft~~Qv~Am~l~klk~~ae~~l~~~v~DcvIavP~~FTd~qRravldAA 160 (727)
T KOG0103|consen 81 QREIKSLPRSVVQLKDGDVGIKVEYLGEKHPFTPEQVLAMLLTKLKATAEKNLKSPVSDCVIAVPSYFTDSQRRAVLDAA 160 (727)
T ss_pred hhcccccchheeecCCCCcceeehcccCCCCCChHHHHHHHHHHHHHHHHHhcCCCCCCeeEeccccccHHHHHHHHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred h------------------------------------------------------------HhhhcCCCCCchhHHHHHH
Q psy740 164 K------------------------------------------------------------IIASAANPYLGGRNIDYKL 183 (763)
Q Consensus 164 ~------------------------------------------------------------vl~~~~d~~lGG~d~D~~l 183 (763)
+ ++++.+|.++||++||..|
T Consensus 161 ~iagLn~lrLmnd~TA~Al~ygiyKtDLP~~~ekpr~v~fvD~GHS~~q~si~aF~kG~lkvl~ta~D~~lGgr~fDe~L 240 (727)
T KOG0103|consen 161 RIAGLNPLRLMNDTTATALAYGIYKTDLPENEEKPRNVVFVDIGHSSYQVSIAAFTKGKLKVLATAFDRKLGGRDFDEAL 240 (727)
T ss_pred hhcCccceeeeecchHhHhhcccccccCCCcccCcceEEEEecccccceeeeeeeccCcceeeeeecccccccchHHHHH
Confidence 9 9999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHhccCCCceeeEEeeccccCcccEEEeeHHHHHHHhHHHHHHHHHH
Q psy740 184 AKHFSQEFKQKYNIEPESNPRAFLRLLTEVEKLKKQMSANSTKLPFGIECFMNDIDVKGEMCRSEMEELCKDVFENVEKT 263 (763)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~~~~~~ie~l~~~~d~~~~itr~~fe~l~~~l~~~i~~~ 263 (763)
.+||+++|+.+|++|+..++|+..||+.+|||+|+.||+|. .++++|||+|++.|++..|+|++||++|.|+++|+..+
T Consensus 241 ~~hfa~efk~kykidv~sn~kA~lRL~~~~EKlKK~lSAN~-~~plNIEcfM~d~dvs~~i~ReEfEel~~plL~rv~~p 319 (727)
T KOG0103|consen 241 IDHFAKEFKTKYKIDVRSNAKAKLRLLAECEKLKKVLSANT-ELPLNIECFMNDKDVSSKIKREEFEELSAPLLERVEVP 319 (727)
T ss_pred HHHHHHHhccccccchhhchhHHHHHHHHHHHHHHHhhcCc-CCCcchhheeecchhhhhccHHHHHHHHHHHHHhhhHH
Confidence 99999999999999999999999999999999999999994 68999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCCccEEEEecCCCCcHHHHHHHHHhcCCCCCCCCChhHHHHhHHHHHcchhcCCccccccEEEEeccc
Q psy740 264 LKDCLEKSKLALSDIHSVEIVGGSSRIPAIKGLIEKIFQKTPSTTLNQDEAVARGCALQCAMLSPAVRVRDFSVTDLQVY 343 (763)
Q Consensus 264 i~~~l~~a~~~~~~i~~V~lvGGssriP~v~~~l~~~fg~~~~~~~n~deaVa~GAa~~aa~ls~~~~~~~~~~~d~~~~ 343 (763)
+.++|+++++..+||+.|++|||+||||.|+++|+++||+++.+++|.|||||+|||++||+||+.||+|+|.++|+.||
T Consensus 320 ~~~~l~d~~l~~edi~~VEiVGg~sripaike~Is~~Fgke~s~TlN~dEavarG~ALqcAIlSP~frVRef~v~Di~py 399 (727)
T KOG0103|consen 320 LLKALADAKLKVEDIHAVEIVGGLSRIPAIKEMISDFFGKELSRTLNQDEAVARGAALQCAILSPTFRVREFSVEDIVPY 399 (727)
T ss_pred HHHHHHHhcCccccceeEEEecCcccchHHHHHHHHHhCCcccccccHHHHHHHhHHHHHHhcCccccceecceecccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEecCCCCCCCCCCceEEEecCCCCcCceEEEEeeeCCCEEEEEEEecC--cCCCCcccceEEeeccCCCCCCCcce
Q psy740 344 PVVMEWDPSPNEPKDSKNFITVFPEMHAAPFSKKMTFYQNKPFAIQLYYEGN--VPYPSKFIGKYQINDVKPGPDNASQK 421 (763)
Q Consensus 344 ~i~i~~~~~~~~~~~~~~~~~l~~~~~~iP~~k~~~f~~~~~~~i~i~~~~~--~~~~~~~ig~~~i~~i~~~~~g~~~~ 421 (763)
+|+++|.....++. ....+||+|+++|.++.+||++.++|++.++|+++ +|.....|++|.+.++.+...|+..+
T Consensus 400 sIs~~w~~~~ed~~---~~~evF~~~~~~p~~K~lT~~Rk~~F~lea~yt~~~~lp~~~~kI~~~~i~~v~~~~~ge~sk 476 (727)
T KOG0103|consen 400 SISLRWVKQGEDGG---SVTEVFPKGHPSPSVKLLTFNRKGPFTLEAKYTKVNKLPYPKPKIEKWTITGVTPSEDGEFSK 476 (727)
T ss_pred eEEEEeccccccCC---CceeeecCCCCCCCceEEEEEecCceEEEEEeccccccCCCCCceeeEEecccccCccccccc
Confidence 99999998776652 44799999999999999999999999999999976 88777899999999999998888889
Q ss_pred EEEEEEEcCCccEEEEEeeeeEeeccCC-CCCCCcccccccccccccccCCccccccccccccCCcchhHhHHHhhhccc
Q psy740 422 VTVKVRVNMDGVIGVIAASMVEKVENSG-DTESMDVENTEEENGQKQEAGSENTENKAEKTQEGQSEDAEKKAAEAKKKV 500 (763)
Q Consensus 422 i~v~~~vd~~Gil~v~~~~~~e~~~~~~-~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~K~ 500 (763)
|+|.++++.+||++|.++.+++..+.++ .+.+++.+.+. . .-+-..+.+.|+
T Consensus 477 VKvkvr~n~~Gi~~i~sA~~~e~~~veev~~~~~e~~~~~-------------------------~--~~~~~~~~~~k~ 529 (727)
T KOG0103|consen 477 VKVKVRLNEHGIDTIESATLIEDIEVEEVPEEPMEYDDAA-------------------------K--MLERIAPAENKK 529 (727)
T ss_pred eeEEEEEcCccceeeecceeecccchhccccchhhhhcch-------------------------h--hhhhhccccccc
Confidence 9999999999999999999998765541 11122211110 0 000011222356
Q ss_pred cceeeeeeEeec-CCCCCHHHHHHHHHHHHhhhhchHHHHHHHHHhhhhHHHHHHHHHHccchHHhhccCCHHHHHHHHH
Q psy740 501 VSKTLDLTISAT-THGLSPEQLNAHTELEGKMIADDKLEKERIDARNCLEEYVYDLRNKLGSEEEFALYIAADDASKLST 579 (763)
Q Consensus 501 ~~k~~~~~i~~~-~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~ea~N~LEs~iy~~R~~L~~~~~~~~~~teeer~~l~~ 579 (763)
+.+...+++... .++|+..+++.+++++.+|..+|+...++.+++|+||+|||+||++|. +.|.+|+++++|++|..
T Consensus 530 kvk~~~L~~~~~~~~~l~~~~l~~~~e~E~~M~~qD~~~~Et~D~KNaleeyVY~~R~kl~--~~y~~f~~~a~~e~~~~ 607 (727)
T KOG0103|consen 530 KVKKVDLPIEAYTKGALITDELELYIEKENKMILQDKLEKETVDAKNALEEYVYDMRDKLS--DKYEDFITDAEREKLKK 607 (727)
T ss_pred eeeeccccceeeeccccCHHHHHHHHHHHHHhhhhhhhhhhhccHHHHHHHHHHHHHHHhh--hhhhhhcCHHHHHHHHH
Confidence 688899999887 458999999999999999999999999999999999999999999998 69999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCcccCCCCHHH
Q psy740 580 QLDETENWLYEEGADVNKSVYISKLDELKAIGEKIRQRKVDYEEKTKAFENIFCSIQIAQKKISMFKEGDERLNHLDAAE 659 (763)
Q Consensus 580 ~l~e~~~WL~~~g~~a~~~~~~~kl~eL~~~~~pi~~R~~E~~~rp~a~~~l~~~l~~~~~~l~~~~~~~~~~~~~t~~e 659 (763)
.|+++++|||++|+|.++..|..||.+|+.+++ ..||++.+.||++++.+.+.|+.++..+.. +
T Consensus 608 ~l~~~E~wlyedGed~~k~~Y~~kl~elk~~g~--~~r~~e~~~r~k~~d~~~~~i~~~r~~~~~--------------~ 671 (727)
T KOG0103|consen 608 MLTDTEEWLYEDGEDQTKAVYVAKLEELKKLGD--KKRFDENEERPKAFDELGKKIQEIRKAIES--------------E 671 (727)
T ss_pred HHHHHHHHHHhcCcccchHHHHHHHHHHHhhhh--hhhhhhhhhhhHHHHHHHHHHHHHHHHHHH--------------H
Confidence 999999999999999999999999999999999 889999999999999999999999986532 7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHhhhhhhcCCC
Q psy740 660 ITVVEEKVANALKWAENAQSLMNEFTDRTKDAPVPTSEIKNEMQNLNNAVNPVFSKPK 717 (763)
Q Consensus 660 ~~~l~~~~~e~~~Wl~~~~~~q~~~~~~~~dP~~~~~di~~k~~~l~~~~~~l~~kpk 717 (763)
+.++...|+++++|++.++.+|.+ ++++.+| +.+++|..+.+.|.+.|.++.++||
T Consensus 672 ~~k~~~~~~~a~kw~~~~~~~q~~-~~~t~~p-v~~~e~~~~~~~l~~~~~~i~~~~k 727 (727)
T KOG0103|consen 672 MEKVLLEIEEAEKWLERKSNKQNK-LSKTADP-VPSSEIESEAKELNNTCSDIISKPK 727 (727)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhc-ccCCCCC-CchHHHHHhhhhhccccccccccCC
Confidence 889999999999999999999999 9999999 9999999999999999999999986
No 2
>KOG0100|consensus
Probab=100.00 E-value=7.2e-112 Score=858.89 Aligned_cols=546 Identities=34% Similarity=0.561 Sum_probs=517.9
Q ss_pred cceEEEEcCccceEEEEEECCceeEEcCCCCCccccEEEEeeCCceEEcHHHHHhHhhccCchHHHhhhhhCCCCCChHH
Q psy740 4 MSVIGIDFGNESCFIAAARAGGIETIANDYSLRATPSCVAFSDRNRILGVAAKNQTVTNMKNTIHGFKRLIGREFKDPHV 83 (763)
Q Consensus 4 ~~viGID~GTt~s~va~~~~g~~~iv~n~~~~r~~PS~V~~~~~~~~~G~~A~~~~~~~p~~~~~~~KrllG~~~~d~~~ 83 (763)
..|||||||||||||+++++|.++||.|++|+|.|||+|+|.+++|++|++|++++..||.||+++.|||||+.|+|+.+
T Consensus 36 gtvigIdLGTTYsCVgV~kNgrvEIiANdQGNRItPSyVaFt~derLiGdAAKNQ~~~NPenTiFD~KRLIGr~~~d~~v 115 (663)
T KOG0100|consen 36 GTVIGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTDDERLIGDAAKNQLTSNPENTIFDAKRLIGRKFNDKSV 115 (663)
T ss_pred ceEEEEecCCceeeEEEEeCCeEEEEecCCCCccccceeeeccchhhhhhHhhcccccCcccceechHHHhCcccCChhh
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhcCCceeeeCCCCCeEEEEEec-CCceeeCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEeecccCCHHHHHHHHHH
Q psy740 84 QDELKFLPYNVSENPDGSIGIKVKYL-NEDRVFTPEQITAMLLTKLRETSEIALQCNISDCVLSVPSFYTNAERKALLDA 162 (763)
Q Consensus 84 ~~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~~~~peev~a~~L~~lk~~ae~~~~~~v~~~VITVPa~f~~~qR~al~~A 162 (763)
|.++++|||+++. .++.+++.|... |+.+.|+|++++||+|.++++.|+.|+|..|.++||||||||+++||+|+.+|
T Consensus 116 q~Dik~~Pfkvv~-k~~kp~i~v~v~~g~~K~FtPeEiSaMiL~KMKe~AEayLGkkv~~AVvTvPAYFNDAQrQATKDA 194 (663)
T KOG0100|consen 116 QKDIKFLPFKVVN-KDGKPYIQVKVGGGETKVFTPEEISAMILTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDA 194 (663)
T ss_pred hhhhhcCceEEEc-CCCCccEEEEccCCcccccCHHHHHHHHHHHHHHHHHHHhCCcccceEEecchhcchHHHhhhccc
Confidence 9999999999984 678889998876 56889999999999999999999999999999999999999999999999999
Q ss_pred Hh------------------------------------------------------HhhhcCCCCCchhHHHHHHHHHHH
Q psy740 163 AK------------------------------------------------------IIASAANPYLGGRNIDYKLAKHFS 188 (763)
Q Consensus 163 a~------------------------------------------------------vl~~~~d~~lGG~d~D~~l~~~~~ 188 (763)
.. |+++.||.||||.|||+++++||.
T Consensus 195 GtIAgLnV~RIiNePTaAAIAYGLDKk~gEknilVfDLGGGTFDVSlLtIdnGVFeVlaTnGDThLGGEDFD~rvm~~fi 274 (663)
T KOG0100|consen 195 GTIAGLNVVRIINEPTAAAIAYGLDKKDGEKNILVFDLGGGTFDVSLLTIDNGVFEVLATNGDTHLGGEDFDQRVMEYFI 274 (663)
T ss_pred ceeccceEEEeecCccHHHHHhcccccCCcceEEEEEcCCceEEEEEEEEcCceEEEEecCCCcccCccchHHHHHHHHH
Confidence 87 999999999999999999999999
Q ss_pred HHHHhhcCCCCCCCHHHHHHHHHHHHHHHHhccCCCceeeEEeeccccCcccEEEeeHHHHHHHhHHHHHHHHHHHHHHH
Q psy740 189 QEFKQKYNIEPESNPRAFLRLLTEVEKLKKQMSANSTKLPFGIECFMNDIDVKGEMCRSEMEELCKDVFENVEKTLKDCL 268 (763)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~~~~~~ie~l~~~~d~~~~itr~~fe~l~~~l~~~i~~~i~~~l 268 (763)
+-|+++++.|++.+.|++.+|+++||++|+.||+.. ++.+.|++|++|.||+-++||..||+|.-+||.+...|++++|
T Consensus 275 klykkK~gkDv~kdnkA~~KLrRe~EkAKRaLSsqh-q~riEIeS~fdG~DfSEtLtRAkFEElNmDLFr~TlkPv~kvl 353 (663)
T KOG0100|consen 275 KLYKKKHGKDVRKDNKAVQKLRREVEKAKRALSSQH-QVRIEIESLFDGVDFSETLTRAKFEELNMDLFRKTLKPVQKVL 353 (663)
T ss_pred HHHhhhcCCccchhhHHHHHHHHHHHHHHhhhcccc-ceEEeeeeccccccccchhhhhHHHHhhhHHHHHhhHHHHHHH
Confidence 999999999999999999999999999999999854 5889999999999999999999999999999999999999999
Q ss_pred HHcCCCCCCccEEEEecCCCCcHHHHHHHHHhc-CCCCCCCCChhHHHHhHHHHHcchhcCCccccccEEEEecccceEE
Q psy740 269 EKSKLALSDIHSVEIVGGSSRIPAIKGLIEKIF-QKTPSTTLNQDEAVARGCALQCAMLSPAVRVRDFSVTDLQVYPVVM 347 (763)
Q Consensus 269 ~~a~~~~~~i~~V~lvGGssriP~v~~~l~~~f-g~~~~~~~n~deaVa~GAa~~aa~ls~~~~~~~~~~~d~~~~~i~i 347 (763)
+++++.+.||+.|+|||||+|||.||++|+++| |++.++.+|||||||+|||.||..||+.....++.+.|++|+++||
T Consensus 354 ~Ds~lkKsdideiVLVGGsTrIPKvQqllk~fF~GKepskGinPdEAVAYGAAVQaGvlsGee~t~divLLDv~pLtlGI 433 (663)
T KOG0100|consen 354 EDSDLKKSDIDEIVLVGGSTRIPKVQQLLKDFFNGKEPSKGINPDEAVAYGAAVQAGVLSGEEDTGDIVLLDVNPLTLGI 433 (663)
T ss_pred hhcCcccccCceEEEecCcccChhHHHHHHHHhCCCCccCCCChHHHHHhhhhhhhcccccccCcCcEEEEeecccccee
Confidence 999999999999999999999999999999999 8899999999999999999999999999888999999999999999
Q ss_pred EecCCCCCCCCCCceE-EEecCCCCcCceEEEEeeeC----CCEEEEEEEecC-cCCCCcccceEEeeccCCCCCCCcce
Q psy740 348 EWDPSPNEPKDSKNFI-TVFPEMHAAPFSKKMTFYQN----KPFAIQLYYEGN-VPYPSKFIGKYQINDVKPGPDNASQK 421 (763)
Q Consensus 348 ~~~~~~~~~~~~~~~~-~l~~~~~~iP~~k~~~f~~~----~~~~i~i~~~~~-~~~~~~~ig~~~i~~i~~~~~g~~~~ 421 (763)
++-+ |.| .|||+|+.||.+++..|++. ..++|.+|+|+. +..+|+.+|+|.++||||+|+|.|+
T Consensus 434 ETvG---------GVMTklI~RNTviPTkKSQvFsTa~DnQ~tV~I~vyEGER~mtkdn~lLGkFdltGipPAPRGvpq- 503 (663)
T KOG0100|consen 434 ETVG---------GVMTKLIPRNTVIPTKKSQVFSTAQDNQPTVTIQVYEGERPMTKDNHLLGKFDLTGIPPAPRGVPQ- 503 (663)
T ss_pred eeec---------ceeeccccCCcccCccccceeeecccCCceEEEEEeeccccccccccccccccccCCCCCCCCCcc-
Confidence 9887 777 69999999999999999763 247899999987 8899999999999999999999995
Q ss_pred EEEEEEEcCCccEEEEEeeeeEeeccCCCCCCCcccccccccccccccCCccccccccccccCCcchhHhHHHhhhcccc
Q psy740 422 VTVKVRVNMDGVIGVIAASMVEKVENSGDTESMDVENTEEENGQKQEAGSENTENKAEKTQEGQSEDAEKKAAEAKKKVV 501 (763)
Q Consensus 422 i~v~~~vd~~Gil~v~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~K~~ 501 (763)
|.|+|.+|.||||+|++.+ + -+
T Consensus 504 IEVtFevDangiL~VsAeD---K-------------------------------------------------------gt 525 (663)
T KOG0100|consen 504 IEVTFEVDANGILQVSAED---K-------------------------------------------------------GT 525 (663)
T ss_pred EEEEEEEccCceEEEEeec---c-------------------------------------------------------CC
Confidence 9999999999999999831 1 11
Q ss_pred ceeeeeeEeecCCCCCHHHHHHHHHHHHhhhhchHHHHHHHHHhhhhHHHHHHHHHHccchHHhhccCCHHHHHHHHHHH
Q psy740 502 SKTLDLTISATTHGLSPEQLNAHTELEGKMIADDKLEKERIDARNCLEEYVYDLRNKLGSEEEFALYIAADDASKLSTQL 581 (763)
Q Consensus 502 ~k~~~~~i~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~ea~N~LEs~iy~~R~~L~~~~~~~~~~teeer~~l~~~l 581 (763)
.++..++|++...+||+++|++|+...+++...|+..+++.++||.||+|.|.|++.+.+.+.+...+++++++.+...+
T Consensus 526 g~~~kitItNd~~rLt~EdIerMv~eAekFAeeDk~~KekieaRN~LE~YayslKnqi~dkekLg~Kl~~edKe~~e~av 605 (663)
T KOG0100|consen 526 GKKEKITITNDKGRLTPEDIERMVNEAEKFAEEDKKLKEKIEARNELESYAYSLKNQIGDKEKLGGKLSDEDKETIEDAV 605 (663)
T ss_pred CCcceEEEecCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHhhhccCchhHhcccCChhHHHHHHHHH
Confidence 34556888888889999999999999999999999999999999999999999999999888899999999999999999
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q psy740 582 DETENWLYEEGADVNKSVYISKLDELKAIGEKIRQRKVD 620 (763)
Q Consensus 582 ~e~~~WL~~~g~~a~~~~~~~kl~eL~~~~~pi~~R~~E 620 (763)
++..+||.++ .++++++|++++++|..++.||...+..
T Consensus 606 ~e~~eWL~~n-~~a~~Ee~~ek~kele~vv~PiisklY~ 643 (663)
T KOG0100|consen 606 EEALEWLESN-QDASKEEFKEKKKELEAVVQPIISKLYG 643 (663)
T ss_pred HHHHHHHhhc-ccccHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999988 8999999999999999999999976654
No 3
>KOG0104|consensus
Probab=100.00 E-value=3.3e-102 Score=842.03 Aligned_cols=705 Identities=27% Similarity=0.441 Sum_probs=595.5
Q ss_pred CcceEEEEcCccceEEEEEECC-ceeEEcCCCCCccccEEEEeeCCceEEcHHHHHhHhhccCchHHHhhhhhCCCCCCh
Q psy740 3 GMSVIGIDFGNESCFIAAARAG-GIETIANDYSLRATPSCVAFSDRNRILGVAAKNQTVTNMKNTIHGFKRLIGREFKDP 81 (763)
Q Consensus 3 ~~~viGID~GTt~s~va~~~~g-~~~iv~n~~~~r~~PS~V~~~~~~~~~G~~A~~~~~~~p~~~~~~~KrllG~~~~d~ 81 (763)
.++|++|||||.|++||++++| +++|++|..++|++|++|+|.+++|+||++|.+++.++|++++.+++.|||+.+.+|
T Consensus 21 ~~AvmsVDlGse~~Kv~vVkPGvPmeIvLn~esrRKtp~~vafk~~eR~fg~~A~~ma~r~P~~~~~~l~~llgk~~~~~ 100 (902)
T KOG0104|consen 21 ALAVMSVDLGSEWIKVAVVKPGVPMEIVLNKESRRKTPSIVAFKGGERIFGEAAASMATRFPQSTYRQLKDLLGKSLDDP 100 (902)
T ss_pred hhhheeeecccceeEEEEecCCCCeEEeechhhcccCcceEEecCCceehhhhhhhhhhcCcHHHHHHHHHHhCcccCCc
Confidence 3579999999999999999999 799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhcCCc-eeeeCC-CCCeEEEEEecCCceeeCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEeecccCCHHHHHHH
Q psy740 82 HVQDELKFLPY-NVSENP-DGSIGIKVKYLNEDRVFTPEQITAMLLTKLRETSEIALQCNISDCVLSVPSFYTNAERKAL 159 (763)
Q Consensus 82 ~~~~~~~~~~~-~~~~~~-~g~~~~~v~~~~~~~~~~peev~a~~L~~lk~~ae~~~~~~v~~~VITVPa~f~~~qR~al 159 (763)
.++.+.+++|| .++.++ ++.+.|.+. +...|++|+|+||+|.+.++.|+.+...+|.++|||||.||+++||+|+
T Consensus 101 ~v~ly~~~~p~~e~v~d~~rstV~F~i~---d~~~ysvEellAMil~~a~~~ae~~a~~~Ikd~ViTVP~~F~qaeR~al 177 (902)
T KOG0104|consen 101 TVDLYQKRFPFFELVEDPQRSTVVFKIS---DQEEYSVEELLAMILQYAKSLAEEYAKQPIKDMVITVPPFFNQAERRAL 177 (902)
T ss_pred HHHHHHhcCCceeecccCccceEEEEeC---CccccCHHHHHHHHHHHHHHHHHHHHhcchhheEEeCCcccCHHHHHHH
Confidence 99999988885 577665 666776664 3578999999999999999999999999999999999999999999999
Q ss_pred HHHHh--------------------------------------------------------------------HhhhcCC
Q psy740 160 LDAAK--------------------------------------------------------------------IIASAAN 171 (763)
Q Consensus 160 ~~Aa~--------------------------------------------------------------------vl~~~~d 171 (763)
++||+ ++|++||
T Consensus 178 l~Aa~iagl~vLqLind~~a~Al~ygv~rRk~i~~~~q~~i~YDMGs~sT~Ativsy~~v~~k~~g~~~p~i~~~gvGfd 257 (902)
T KOG0104|consen 178 LQAAQIAGLNVLQLINDGTAVALNYGVFRRKEINETPQHYIFYDMGSGSTSATIVSYQLVKTKEQGGKQPQIQVLGVGFD 257 (902)
T ss_pred HHHHHhcCchhhhhhccchHHHhhhhhhccccCCCCceEEEEEecCCCceeEEEEEEEeeccccccCccceEEEEeeccC
Confidence 99999 8999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHhhcCC--CCCCCHHHHHHHHHHHHHHHHhccCCCceeeEEeeccccCcccEEEeeHHHH
Q psy740 172 PYLGGRNIDYKLAKHFSQEFKQKYNI--EPESNPRAFLRLLTEVEKLKKQMSANSTKLPFGIECFMNDIDVKGEMCRSEM 249 (763)
Q Consensus 172 ~~lGG~d~D~~l~~~~~~~~~~~~~~--~~~~~~~~~~rL~~~aek~K~~LS~~~~~~~~~ie~l~~~~d~~~~itr~~f 249 (763)
++|||..|.++|.+||...|.++++. ++..++|+|+||.++|+++|.+||+|+ ++.++||+|++|+||+.+|||++|
T Consensus 258 ~tLGG~e~~~rLr~~l~~~F~~~~k~~~dv~~nprAmaKl~keA~R~K~vLSANs-ea~aqIEsL~ddiDFr~kvTRe~f 336 (902)
T KOG0104|consen 258 RTLGGLEMTMRLRDHLANEFNEQHKTKKDVHTNPRAMAKLNKEAERLKQVLSANS-EAFAQIESLIDDIDFRLKVTREEF 336 (902)
T ss_pred CccchHHHHHHHHHHHHHHHHHhcCCccccccCHHHHHHHHHHHHHHHHHhhcch-hhHHHHHHHhhccccccceeHHHH
Confidence 99999999999999999999998874 788999999999999999999999998 588999999999999999999999
Q ss_pred HHHhHHHHHHHHHHHHHHHHHcCCCCCCccEEEEecCCCCcHHHHHHHHHhcCC-CCCCCCChhHHHHhHHHHHcchhcC
Q psy740 250 EELCKDVFENVEKTLKDCLEKSKLALSDIHSVEIVGGSSRIPAIKGLIEKIFQK-TPSTTLNQDEAVARGCALQCAMLSP 328 (763)
Q Consensus 250 e~l~~~l~~~i~~~i~~~l~~a~~~~~~i~~V~lvGGssriP~v~~~l~~~fg~-~~~~~~n~deaVa~GAa~~aa~ls~ 328 (763)
|++|.+++.|+..||+++|..++++..+|+.|+|+||+||+|.||+.|.++.|. ++..++|+|||+++||+|+||.||.
T Consensus 337 Eelc~Dl~~r~~~Pi~dAl~~a~l~ldeIn~ViL~Gg~TRVP~VQe~l~k~v~~~ei~knlNaDEA~vmGav~~aA~LSk 416 (902)
T KOG0104|consen 337 EELCADLEERIVEPINDALKKAQLSLDEINQVILFGGATRVPKVQETLIKAVGKEELGKNLNADEAAVMGAVYQAAHLSK 416 (902)
T ss_pred HHHHHHHHHhhhhhHHHHHHhcCCChhhhheeEEecCcccCchHHHHHHHHHhHHHHhcccChhHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999999999999999999985 6999999999999999999999999
Q ss_pred CccccccEEEEecccceEEEecCCCCCCCCCCceEEEecCCCCcCceEEEEeee-CCCEEEEEEEecCcCCCCcccceEE
Q psy740 329 AVRVRDFSVTDLQVYPVVMEWDPSPNEPKDSKNFITVFPEMHAAPFSKKMTFYQ-NKPFAIQLYYEGNVPYPSKFIGKYQ 407 (763)
Q Consensus 329 ~~~~~~~~~~d~~~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~iP~~k~~~f~~-~~~~~i~i~~~~~~~~~~~~ig~~~ 407 (763)
+|++++|.|.|.++|+|.+++....+-.........+|++|.++|..++++|+. .++|.+.+.|+.- ...+..|.
T Consensus 417 sFKvKpf~V~D~~~yp~~v~f~~~~~i~~~k~~~~~lf~~~~~yPnk~vi~~~~ysddf~~~~n~~~~----~~nl~~ve 492 (902)
T KOG0104|consen 417 SFKVKPFNVVDASVYPYLVEFETEPGIHALKSVKRDLFARMSPYPNKKVITFTSYSDDFPFNINYGDL----GQNLTTVE 492 (902)
T ss_pred cccccceeeeecccccEEEEeccCCcccccchhHHHHHhcCCcCCCcceeeccccCCccccccchhhh----ccCccEEE
Confidence 999999999999999999999875220000002236999999999999888865 5678888877641 02345889
Q ss_pred eeccCCCC------CCCcceEEEEEEEcCCccEEEEEeeeeEeeccCCCCC-CCcccccc--ccccc------cccc-C-
Q psy740 408 INDVKPGP------DNASQKVTVKVRVNMDGVIGVIAASMVEKVENSGDTE-SMDVENTE--EENGQ------KQEA-G- 470 (763)
Q Consensus 408 i~~i~~~~------~g~~~~i~v~~~vd~~Gil~v~~~~~~e~~~~~~~~~-~~~~~~~~--~~~~~------~~~~-~- 470 (763)
+.|+...- ....+.|+++|.+|.+|++.|+.+++++....+++.. ...+.... +.++. .+++ .
T Consensus 493 lsgV~d~~kk~~~~~~~~KGIk~~F~~D~Sgi~~v~~~evv~e~~~~~d~~~~~st~~K~~~~~e~e~~~~~~~~~e~ae 572 (902)
T KOG0104|consen 493 LSGVKDALKKNSYSDSESKGIKASFSLDLSGIVLVSRVEVVFEKQKEEDSGDKKSTLSKLGSTSEGEETSDDSVQEEDAE 572 (902)
T ss_pred EecchHHHHhcccchhhccCceEEEEEcCcCceEEeeeeEEEeccCCcccchhhhhhhccccccccccccccccchhhhh
Confidence 99886421 1234569999999999999999887664331110000 00000000 00000 0000 0
Q ss_pred ------Ccccc-ccccccccCCc------chhHhHHHhhhccccceeeeeeEeec---CCCCCHHHHHHHHHHHHhhhhc
Q psy740 471 ------SENTE-NKAEKTQEGQS------EDAEKKAAEAKKKVVSKTLDLTISAT---THGLSPEQLNAHTELEGKMIAD 534 (763)
Q Consensus 471 ------~e~~~-~~~~~~~~~~~------~~~~~~~~~~~~K~~~k~~~~~i~~~---~~~ls~~ei~~~~~~~~~~~~~ 534 (763)
+|.++ +++++.++..+ ....+.+-.++.+.-...+.++|+.. .+.|+...+.....++..+.++
T Consensus 573 ~k~~ep~e~se~~ee~~~d~s~e~k~e~~t~e~~~~~~~~~~~~p~~~~~~i~~~~~~~~~l~~~~~~~~~~kl~d~~~~ 652 (902)
T KOG0104|consen 573 EKGLEPSERSELEEEAEEDASQEDKTEKETSEAQKPTEKKETPAPMVVRLQIQETYPDLPVLNENALDAAVAKLEDFVQK 652 (902)
T ss_pred hhccCccccccccccccccccccccccccchhccCcchhhcccCcceeEeeeeeecccccCCchhHHHHHHHHHHHHHHh
Confidence 01000 00011000000 00001111112222234455666554 2369999999999999999999
Q ss_pred hHHHHHHHHHhhhhHHHHHHHHHHccchHHhhccCCHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH
Q psy740 535 DKLEKERIDARNCLEEYVYDLRNKLGSEEEFALYIAADDASKLSTQLDETENWLYEEGADVNKSVYISKLDELKAIGEKI 614 (763)
Q Consensus 535 D~~~~~~~ea~N~LEs~iy~~R~~L~~~~~~~~~~teeer~~l~~~l~e~~~WL~~~g~~a~~~~~~~kl~eL~~~~~pi 614 (763)
|+.+.+|++|.|.||+|+|++.++|++ ++|..|++++|+..|.+.+..+.+||+++|.+..++.|.+++.+|++++..+
T Consensus 653 e~~k~~re~a~N~LE~~l~e~q~~l~d-~ey~e~at~EEk~~L~~~~~~~~~Wleed~~~~~t~~~~ek~a~L~~l~~~~ 731 (902)
T KOG0104|consen 653 EKEKSEREEASNELEAFLFELQDKLDD-DEYAEVATEEEKKILKKKVSLLMDWLEEDGSQTPTEMLTEKLAELKKLETSK 731 (902)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhcC-chHhhhcCHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999997 8899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhh---cCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCC
Q psy740 615 RQRKVDYEEKTKAFENIFCSIQIAQKKISMFK---EGDERLNHLDAAEITVVEEKVANALKWAENAQSLMNEFTDRTKDA 691 (763)
Q Consensus 615 ~~R~~E~~~rp~a~~~l~~~l~~~~~~l~~~~---~~~~~~~~~t~~e~~~l~~~~~e~~~Wl~~~~~~q~~~~~~~~dP 691 (763)
.+|.+++..+|..++.|...|+.+.+|+.... ..++....++..+++.|.+.|.++..|+++....|.+ +++++||
T Consensus 732 ~~R~ee~kq~pe~l~~l~~~l~~s~~~l~~~~~~~~~~E~d~~ft~~e~~~L~k~i~~t~~W~~~~~~~~~k-~~k~edp 810 (902)
T KOG0104|consen 732 NFREEERKQFPEELEALKNLLNRSFSFLKQARNLSTWEEKDTIFTKTEIDTLEKVIAKTTAWLNDRLDLFEK-KAKTEDP 810 (902)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccccccchhccchhhhhHHHHHHHHHHhHHHhhhhHHHHHh-hhcccCc
Confidence 99999999999999999999999999998877 5666666799999999999999999999999999999 9999999
Q ss_pred CcchHHHHHHHHHHHHhhhhhhcCCC
Q psy740 692 PVPTSEIKNEMQNLNNAVNPVFSKPK 717 (763)
Q Consensus 692 ~~~~~di~~k~~~l~~~~~~l~~kpk 717 (763)
+++++||..|++.|++++.+++||-|
T Consensus 811 ~~k~kei~~K~k~Ldrev~~~lnK~k 836 (902)
T KOG0104|consen 811 VLKVKEIEEKAKSLDREVLYLLNKLK 836 (902)
T ss_pred cccHHHHHHHHHhhHHHHHHHHHHhh
Confidence 99999999999999999999998844
No 4
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=100.00 E-value=9.6e-93 Score=825.74 Aligned_cols=549 Identities=31% Similarity=0.529 Sum_probs=506.2
Q ss_pred CCCcceEEEEcCccceEEEEEECCceeEEcCCCCCccccEEEEeeCCceEEcHHHHHhHhhccCchHHHhhhhhCCCCCC
Q psy740 1 MAGMSVIGIDFGNESCFIAAARAGGIETIANDYSLRATPSCVAFSDRNRILGVAAKNQTVTNMKNTIHGFKRLIGREFKD 80 (763)
Q Consensus 1 m~~~~viGID~GTt~s~va~~~~g~~~iv~n~~~~r~~PS~V~~~~~~~~~G~~A~~~~~~~p~~~~~~~KrllG~~~~d 80 (763)
|..+.+||||||||||+||++++|++++|.|..|+|.|||+|+|.+++++||..|+.++.++|.++++++|||||+.++|
T Consensus 1 ~~~~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d 80 (653)
T PTZ00009 1 MTKGPAIGIDLGTTYSCVGVWKNENVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVARNPENTVFDAKRLIGRKFDD 80 (653)
T ss_pred CCcccEEEEEeCcccEEEEEEeCCceEEEECCCCCccCCcEEEECCCCEEEcHHHHHhhhhCcccEEhhhHHHhCCCCCc
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhhhcCCceeeeCCCCCeEEEEEecCCceeeCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEeecccCCHHHHHHHH
Q psy740 81 PHVQDELKFLPYNVSENPDGSIGIKVKYLNEDRVFTPEQITAMLLTKLRETSEIALQCNISDCVLSVPSFYTNAERKALL 160 (763)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~peev~a~~L~~lk~~ae~~~~~~v~~~VITVPa~f~~~qR~al~ 160 (763)
+.++.+.+++||.++..+++...+.+.+.+....|+|++|++++|++|++.|+.+++..+.+||||||+||++.||++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~ 160 (653)
T PTZ00009 81 SVVQSDMKHWPFKVTTGGDDKPMIEVTYQGEKKTFHPEEISSMVLQKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATK 160 (653)
T ss_pred hhHhhhhhcCceEEEEcCCCceEEEEEeCCceEEECHHHHHHHHHHHHHHHHHHHhCCCcceeEEEeCCCCCHHHHHHHH
Confidence 99999999999999998999999999988877899999999999999999999999999999999999999999999999
Q ss_pred HHHh-------------------------------------------------------HhhhcCCCCCchhHHHHHHHH
Q psy740 161 DAAK-------------------------------------------------------IIASAANPYLGGRNIDYKLAK 185 (763)
Q Consensus 161 ~Aa~-------------------------------------------------------vl~~~~d~~lGG~d~D~~l~~ 185 (763)
+||+ |+++.||.+|||++||.+|++
T Consensus 161 ~Aa~~AGl~v~~li~EptAAAl~y~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~a~~gd~~lGG~d~D~~l~~ 240 (653)
T PTZ00009 161 DAGTIAGLNVLRIINEPTAAAIAYGLDKKGDGEKNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLVE 240 (653)
T ss_pred HHHHHcCCceeEEecchHHHHHHHhhhccCCCCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCCChHHHHHHHHH
Confidence 9999 778899999999999999999
Q ss_pred HHHHHHHhhc-CCCCCCCHHHHHHHHHHHHHHHHhccCCCceeeEEeeccccCcccEEEeeHHHHHHHhHHHHHHHHHHH
Q psy740 186 HFSQEFKQKY-NIEPESNPRAFLRLLTEVEKLKKQMSANSTKLPFGIECFMNDIDVKGEMCRSEMEELCKDVFENVEKTL 264 (763)
Q Consensus 186 ~~~~~~~~~~-~~~~~~~~~~~~rL~~~aek~K~~LS~~~~~~~~~ie~l~~~~d~~~~itr~~fe~l~~~l~~~i~~~i 264 (763)
||.++|..++ +.++..+++++.||+.+||++|+.||++. .+.+.|++++++.|++++|||++||++|+|+++++..+|
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~aEkaK~~LS~~~-~~~i~i~~~~~~~d~~~~itR~~fe~l~~~l~~~~~~~i 319 (653)
T PTZ00009 241 FCVQDFKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSST-QATIEIDSLFEGIDYNVTISRARFEELCGDYFRNTLQPV 319 (653)
T ss_pred HHHHHHHHhccCCCCccCHHHHHHHHHHHHHHHHhCCCCc-eEEEEEEeccCCceEEEEECHHHHHHHHHHHHHHHHHHH
Confidence 9999999887 47888899999999999999999999976 578999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCCccEEEEecCCCCcHHHHHHHHHhcC-CCCCCCCChhHHHHhHHHHHcchhcCC--ccccccEEEEec
Q psy740 265 KDCLEKSKLALSDIHSVEIVGGSSRIPAIKGLIEKIFQ-KTPSTTLNQDEAVARGCALQCAMLSPA--VRVRDFSVTDLQ 341 (763)
Q Consensus 265 ~~~l~~a~~~~~~i~~V~lvGGssriP~v~~~l~~~fg-~~~~~~~n~deaVa~GAa~~aa~ls~~--~~~~~~~~~d~~ 341 (763)
+++|+.+++++.+|+.|+||||+||||+||++|+++|| ..+..++|||+|||+|||++|+++++. ++++++.+.|++
T Consensus 320 ~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~i~~~f~~~~~~~~~npdeaVA~GAa~~aa~ls~~~~~~~~~~~~~dv~ 399 (653)
T PTZ00009 320 EKVLKDAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFNGKEPCKSINPDEAVAYGAAVQAAILTGEQSSQVQDLLLLDVT 399 (653)
T ss_pred HHHHHHcCCCHHHCcEEEEECCCCCChhHHHHHHHHhCCCCCCCCCCcchHHhhhhhhhHHHhcCCccccccceEEEeec
Confidence 99999999999999999999999999999999999996 578899999999999999999999985 788999999999
Q ss_pred ccceEEEecCCCCCCCCCCceEEEecCCCCcCceEEEEeeeC----CCEEEEEEEecC-cCCCCcccceEEeeccCCCCC
Q psy740 342 VYPVVMEWDPSPNEPKDSKNFITVFPEMHAAPFSKKMTFYQN----KPFAIQLYYEGN-VPYPSKFIGKYQINDVKPGPD 416 (763)
Q Consensus 342 ~~~i~i~~~~~~~~~~~~~~~~~l~~~~~~iP~~k~~~f~~~----~~~~i~i~~~~~-~~~~~~~ig~~~i~~i~~~~~ 416 (763)
||+||++..+ + ...+||++|++||++++.+|++. ..+.|.+|+|+. .+.+|..||+|.|.++++.+.
T Consensus 400 p~slgi~~~~----~----~~~~ii~~~t~iP~~~~~~f~t~~d~q~~~~i~i~ege~~~~~~n~~lg~~~i~~i~~~~~ 471 (653)
T PTZ00009 400 PLSLGLETAG----G----VMTKLIERNTTIPTKKSQIFTTYADNQPGVLIQVFEGERAMTKDNNLLGKFHLDGIPPAPR 471 (653)
T ss_pred ccccCccccC----C----ceEEEEeCCCcCCccceeEeEeecCCCceEEEEEEecccccCCCCceEEEEEEcCCCCCCC
Confidence 9999998654 1 35589999999999999999653 248999999987 777889999999999999888
Q ss_pred CCcceEEEEEEEcCCccEEEEEeeeeEeeccCCCCCCCcccccccccccccccCCccccccccccccCCcchhHhHHHhh
Q psy740 417 NASQKVTVKVRVNMDGVIGVIAASMVEKVENSGDTESMDVENTEEENGQKQEAGSENTENKAEKTQEGQSEDAEKKAAEA 496 (763)
Q Consensus 417 g~~~~i~v~~~vd~~Gil~v~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 496 (763)
|.+ .|+|+|++|.||+|+|++.+ ..
T Consensus 472 g~~-~i~v~f~id~~Gil~v~~~~---~~--------------------------------------------------- 496 (653)
T PTZ00009 472 GVP-QIEVTFDIDANGILNVSAED---KS--------------------------------------------------- 496 (653)
T ss_pred CCc-eEEEEEEECCCCeEEEEEec---cc---------------------------------------------------
Confidence 875 69999999999999998741 10
Q ss_pred hccccceeeeeeEeecCCCCCHHHHHHHHHHHHhhhhchHHHHHHHHHhhhhHHHHHHHHHHccchHHhhccCCHHHHHH
Q psy740 497 KKKVVSKTLDLTISATTHGLSPEQLNAHTELEGKMIADDKLEKERIDARNCLEEYVYDLRNKLGSEEEFALYIAADDASK 576 (763)
Q Consensus 497 ~~K~~~k~~~~~i~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~ea~N~LEs~iy~~R~~L~~~~~~~~~~teeer~~ 576 (763)
..+...+++.....+|+.++++++++.+.+|..+|+.++++.+++|+||+|||++|++|.+ +.|..++++++|++
T Consensus 497 ----t~~~~~~~i~~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~eakN~lEs~Iy~~r~~L~~-~~~~~~~t~ee~~~ 571 (653)
T PTZ00009 497 ----TGKSNKITITNDKGRLSKADIDRMVNEAEKYKAEDEANRERVEAKNGLENYCYSMKNTLQD-EKVKGKLSDSDKAT 571 (653)
T ss_pred ----CCceeeEEEeeccccccHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHHHhh-hhhhccCCHHHHHH
Confidence 0122334444445689999999999999999999999999999999999999999999974 45999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy740 577 LSTQLDETENWLYEEGADVNKSVYISKLDELKAIGEKIRQRKV 619 (763)
Q Consensus 577 l~~~l~e~~~WL~~~g~~a~~~~~~~kl~eL~~~~~pi~~R~~ 619 (763)
|.+.|+++++|||+ +++++.++|.+|+++|+++++||..|+.
T Consensus 572 l~~~l~~~~~wL~~-~~~~~~~~~~~kl~eL~~~~~pi~~r~~ 613 (653)
T PTZ00009 572 IEKAIDEALEWLEK-NQLAEKEEFEHKQKEVESVCNPIMTKMY 613 (653)
T ss_pred HHHHHHHHHHHHhc-CCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999995 6889999999999999999999998875
No 5
>PRK13410 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=1.2e-90 Score=804.55 Aligned_cols=556 Identities=24% Similarity=0.444 Sum_probs=499.6
Q ss_pred cceEEEEcCccceEEEEEECCceeEEcCCCCCccccEEEEeeC-CceEEcHHHHHhHhhccCchHHHhhhhhCCCCCChH
Q psy740 4 MSVIGIDFGNESCFIAAARAGGIETIANDYSLRATPSCVAFSD-RNRILGVAAKNQTVTNMKNTIHGFKRLIGREFKDPH 82 (763)
Q Consensus 4 ~~viGID~GTt~s~va~~~~g~~~iv~n~~~~r~~PS~V~~~~-~~~~~G~~A~~~~~~~p~~~~~~~KrllG~~~~d~~ 82 (763)
..+||||||||||+||++++|.+.+|.|..|.|.|||+|+|.. ++++||..|+.++..+|.++++++|||||+.+.+
T Consensus 2 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KRliG~~~~~-- 79 (668)
T PRK13410 2 GRIVGIDLGTTNSVVAVMEGGKPVVIANAEGMRTTPSVVGFTKDGELLVGQLARRQLVLNPQNTFYNLKRFIGRRYDE-- 79 (668)
T ss_pred CcEEEEEeCCCcEEEEEEECCeEEEEECCCCCccCceEEEEeCCCCEEECHHHHHhhHhCccceehHHhhhhCCCchh--
Confidence 4699999999999999999999999999999999999999974 6899999999999999999999999999999866
Q ss_pred HHhhhhcCCceeeeCCCCCeEEEEEecCCceeeCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEeecccCCHHHHHHHHHH
Q psy740 83 VQDELKFLPYNVSENPDGSIGIKVKYLNEDRVFTPEQITAMLLTKLRETSEIALQCNISDCVLSVPSFYTNAERKALLDA 162 (763)
Q Consensus 83 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~peev~a~~L~~lk~~ae~~~~~~v~~~VITVPa~f~~~qR~al~~A 162 (763)
++....++||.++..++|.+.+.+.. .+..|+|++|+|++|++|++.|+.++|.++.+||||||+||++.||+++++|
T Consensus 80 ~~~~~~~~~~~v~~~~~g~~~i~~~~--~~~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~A 157 (668)
T PRK13410 80 LDPESKRVPYTIRRNEQGNVRIKCPR--LEREFAPEELSAMILRKLADDASRYLGEPVTGAVITVPAYFNDSQRQATRDA 157 (668)
T ss_pred hHHhhccCCeEEEECCCCcEEEEEec--CCeEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHH
Confidence 55667889999999889988887653 3478999999999999999999999999999999999999999999999999
Q ss_pred Hh-----------------------------------------------------HhhhcCCCCCchhHHHHHHHHHHHH
Q psy740 163 AK-----------------------------------------------------IIASAANPYLGGRNIDYKLAKHFSQ 189 (763)
Q Consensus 163 a~-----------------------------------------------------vl~~~~d~~lGG~d~D~~l~~~~~~ 189 (763)
|+ |+++.||.+|||++||..|++||.+
T Consensus 158 a~~AGl~v~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~Dvsv~~~~~g~~~V~at~gd~~lGG~dfD~~l~~~l~~ 237 (668)
T PRK13410 158 GRIAGLEVERILNEPTAAALAYGLDRSSSQTVLVFDLGGGTFDVSLLEVGNGVFEVKATSGDTQLGGNDFDKRIVDWLAE 237 (668)
T ss_pred HHHcCCCeEEEecchHHHHHHhccccCCCCEEEEEECCCCeEEEEEEEEcCCeEEEEEeecCCCCChhHHHHHHHHHHHH
Confidence 99 7888999999999999999999999
Q ss_pred HHHhhcCCCCCCCHHHHHHHHHHHHHHHHhccCCCceeeEEeeccccC----cccEEEeeHHHHHHHhHHHHHHHHHHHH
Q psy740 190 EFKQKYNIEPESNPRAFLRLLTEVEKLKKQMSANSTKLPFGIECFMND----IDVKGEMCRSEMEELCKDVFENVEKTLK 265 (763)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~~~~~~ie~l~~~----~d~~~~itr~~fe~l~~~l~~~i~~~i~ 265 (763)
+|..++++++..+++++.+|+.+||++|+.||.+. .+.+.+++++.+ .++.+.|||++||++|+++++++..+|+
T Consensus 238 ~f~~~~~~d~~~~~~a~~rL~~~aEkaK~~LS~~~-~~~i~i~~~~~~~~g~~~~~~~itR~~FE~l~~~l~~r~~~~i~ 316 (668)
T PRK13410 238 QFLEKEGIDLRRDRQALQRLTEAAEKAKIELSGVS-VTDISLPFITATEDGPKHIETRLDRKQFESLCGDLLDRLLRPVK 316 (668)
T ss_pred HHHhhhCCCcccCHHHHHHHHHHHHHHHHhcCCCC-ceEEEEeeeecCCCCCeeEEEEECHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999976 467888887643 4688899999999999999999999999
Q ss_pred HHHHHcCCCCCCccEEEEecCCCCcHHHHHHHHHhcCCCCCCCCChhHHHHhHHHHHcchhcCCccccccEEEEecccce
Q psy740 266 DCLEKSKLALSDIHSVEIVGGSSRIPAIKGLIEKIFQKTPSTTLNQDEAVARGCALQCAMLSPAVRVRDFSVTDLQVYPV 345 (763)
Q Consensus 266 ~~l~~a~~~~~~i~~V~lvGGssriP~v~~~l~~~fg~~~~~~~n~deaVa~GAa~~aa~ls~~~~~~~~~~~d~~~~~i 345 (763)
++|+++++.+.+|+.|+||||+||||+|+++|+++||.++..++|||+|||+|||++|+++++. ++++.+.|++||+|
T Consensus 317 ~~L~~ag~~~~dId~VvLVGGssRiP~V~~~l~~~fg~~~~~~~npdeaVA~GAAi~aa~ls~~--~~~~~l~Dv~p~sl 394 (668)
T PRK13410 317 RALKDAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLIPREPNQNVNPDEVVAVGAAIQAGILAGE--LKDLLLLDVTPLSL 394 (668)
T ss_pred HHHHHcCCChhhCcEEEEECCccccHHHHHHHHHHcCCCcccCCCCchHHHHhHHHHHHhhccc--ccceeEEeeccccc
Confidence 9999999999999999999999999999999999999989999999999999999999999985 67899999999999
Q ss_pred EEEecCCCCCCCCCCceEEEecCCCCcCceEEEEeeeC----CCEEEEEEEecC-cCCCCcccceEEeeccCCCCCCCcc
Q psy740 346 VMEWDPSPNEPKDSKNFITVFPEMHAAPFSKKMTFYQN----KPFAIQLYYEGN-VPYPSKFIGKYQINDVKPGPDNASQ 420 (763)
Q Consensus 346 ~i~~~~~~~~~~~~~~~~~l~~~~~~iP~~k~~~f~~~----~~~~i~i~~~~~-~~~~~~~ig~~~i~~i~~~~~g~~~ 420 (763)
|+++.+ + .+.+|||+|++||++++.+|++. ..+.|.+|+|+. +..+|..||+|.|.|+++.+.|.+
T Consensus 395 gie~~~----g----~~~~li~rnt~iP~~~~~~f~t~~dnq~~v~i~v~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~- 465 (668)
T PRK13410 395 GLETIG----G----VMKKLIPRNTTIPVRRSDVFSTSENNQSSVEIHVWQGEREMASDNKSLGRFKLSGIPPAPRGVP- 465 (668)
T ss_pred cceecC----C----eeEEEEeCCCcccccccccceeccCCCcEEEEEEEeeccccccCCceEEEEEEeCCCCCCCCCC-
Confidence 999865 1 34589999999999999999754 357889999877 778899999999999999999886
Q ss_pred eEEEEEEEcCCccEEEEEeeeeEeeccCCCCCCCcccccccccccccccCCccccccccccccCCcchhHhHHHhhhccc
Q psy740 421 KVTVKVRVNMDGVIGVIAASMVEKVENSGDTESMDVENTEEENGQKQEAGSENTENKAEKTQEGQSEDAEKKAAEAKKKV 500 (763)
Q Consensus 421 ~i~v~~~vd~~Gil~v~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~K~ 500 (763)
+|+|+|++|.||+|+|++.+ ...
T Consensus 466 ~I~v~f~id~nGiL~V~a~d---~~t------------------------------------------------------ 488 (668)
T PRK13410 466 QVQVAFDIDANGILQVSATD---RTT------------------------------------------------------ 488 (668)
T ss_pred eEEEEEEECCCcEEEEEEEE---cCC------------------------------------------------------
Confidence 69999999999999999842 100
Q ss_pred cceeeeeeEeecCCCCCHHHHHHHHHHHHhhhhchHHHHHHHHHhhhhHHHHHHHHHHccc-hHHhhccCCHHHHHHHHH
Q psy740 501 VSKTLDLTISATTHGLSPEQLNAHTELEGKMIADDKLEKERIDARNCLEEYVYDLRNKLGS-EEEFALYIAADDASKLST 579 (763)
Q Consensus 501 ~~k~~~~~i~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~ea~N~LEs~iy~~R~~L~~-~~~~~~~~teeer~~l~~ 579 (763)
.+...++|.. ..+|+.++++++++++.+|...|+.++++.+++|+||+|||.+|++|.+ ++.|..++++++|+.|..
T Consensus 489 -g~~~~~~i~~-~~~ls~~ei~~~~~~~~~~~~~d~~~~~~~e~kn~~e~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 566 (668)
T PRK13410 489 -GREQSVTIQG-ASTLSEQEVNRMIQEAEAKADEDRRRRERIEKRNRALTLIAQAERRLRDAALEFGPYFAERQRRAVES 566 (668)
T ss_pred -Cceeeeeecc-cccCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCHHHHHHHHH
Confidence 1122334433 3589999999999999999999999999999999999999999999973 246999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q psy740 580 QLDETENWLYEEGADVNKSVYISKLDELKAIGEKIRQRKVDYEEKTKAFENIFCSIQ 636 (763)
Q Consensus 580 ~l~e~~~WL~~~g~~a~~~~~~~kl~eL~~~~~pi~~R~~E~~~rp~a~~~l~~~l~ 636 (763)
.|+++++|||+++.+...+.|.++++.|+.++.||..|+.| .-..-+..+++++.
T Consensus 567 ~l~~~~~wL~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 621 (668)
T PRK13410 567 AMRDVQDSLEQDDDRELDLAVADLQEALYGLNREVRAEYKE--EDEGPLQGIKNTFG 621 (668)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cccchhhhHHhhcc
Confidence 99999999999988888999999999999999999999999 23333455555554
No 6
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=100.00 E-value=1.6e-88 Score=789.45 Aligned_cols=533 Identities=27% Similarity=0.481 Sum_probs=487.3
Q ss_pred cceEEEEcCccceEEEEEECCceeEEcCCCCCccccEEEEeeC-CceEEcHHHHHhHhhccCchHHHhhhhhCCCCCChH
Q psy740 4 MSVIGIDFGNESCFIAAARAGGIETIANDYSLRATPSCVAFSD-RNRILGVAAKNQTVTNMKNTIHGFKRLIGREFKDPH 82 (763)
Q Consensus 4 ~~viGID~GTt~s~va~~~~g~~~iv~n~~~~r~~PS~V~~~~-~~~~~G~~A~~~~~~~p~~~~~~~KrllG~~~~d~~ 82 (763)
+.+||||||||||+||++++|++++|.|.+|+|.|||+|+|.+ ++++||..|+.++.++|.++++++|||||+.++|+.
T Consensus 41 ~~viGIDlGTt~s~va~~~~~~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~ 120 (663)
T PTZ00400 41 GDIVGIDLGTTNSCVAIMEGSQPKVIENSEGMRTTPSVVAFTEDGQRLVGIVAKRQAVTNPENTVFATKRLIGRRYDEDA 120 (663)
T ss_pred CcEEEEEECcccEEEEEEeCCeeEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhHHhCCcceehhhhhhcCCCcCcHH
Confidence 4699999999999999999999999999999999999999975 589999999999999999999999999999999999
Q ss_pred HHhhhhcCCceeeeCCCCCeEEEEEecCCceeeCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEeecccCCHHHHHHHHHH
Q psy740 83 VQDELKFLPYNVSENPDGSIGIKVKYLNEDRVFTPEQITAMLLTKLRETSEIALQCNISDCVLSVPSFYTNAERKALLDA 162 (763)
Q Consensus 83 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~peev~a~~L~~lk~~ae~~~~~~v~~~VITVPa~f~~~qR~al~~A 162 (763)
++...+++||.++..++|.+.+.+. +..|+|++|++++|++|++.|+.++|..+.+||||||+||++.||+++++|
T Consensus 121 ~~~~~~~~p~~~~~~~~~~~~~~~~----~~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~A 196 (663)
T PTZ00400 121 TKKEQKILPYKIVRASNGDAWIEAQ----GKKYSPSQIGAFVLEKMKETAESYLGRKVKQAVITVPAYFNDSQRQATKDA 196 (663)
T ss_pred HHhhhccCCeEEEecCCCceEEEEC----CEEECHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHHH
Confidence 9999999999999988888887764 578999999999999999999999999999999999999999999999999
Q ss_pred Hh-----------------------------------------------------HhhhcCCCCCchhHHHHHHHHHHHH
Q psy740 163 AK-----------------------------------------------------IIASAANPYLGGRNIDYKLAKHFSQ 189 (763)
Q Consensus 163 a~-----------------------------------------------------vl~~~~d~~lGG~d~D~~l~~~~~~ 189 (763)
|+ |++++||.+|||++||+.|++||.+
T Consensus 197 a~~AGl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~~~~g~~~v~a~~gd~~LGG~d~D~~l~~~l~~ 276 (663)
T PTZ00400 197 GKIAGLDVLRIINEPTAAALAFGMDKNDGKTIAVYDLGGGTFDISILEILGGVFEVKATNGNTSLGGEDFDQRILNYLIA 276 (663)
T ss_pred HHHcCCceEEEeCchHHHHHHhccccCCCcEEEEEeCCCCeEEEEEEEecCCeeEEEecccCCCcCHHHHHHHHHHHHHH
Confidence 99 7788999999999999999999999
Q ss_pred HHHhhcCCCCCCCHHHHHHHHHHHHHHHHhccCCCceeeEEeeccccC----cccEEEeeHHHHHHHhHHHHHHHHHHHH
Q psy740 190 EFKQKYNIEPESNPRAFLRLLTEVEKLKKQMSANSTKLPFGIECFMND----IDVKGEMCRSEMEELCKDVFENVEKTLK 265 (763)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~~~~~~ie~l~~~----~d~~~~itr~~fe~l~~~l~~~i~~~i~ 265 (763)
+|..+++.++..+++++.+|+.+||++|+.||.+. .+.+.++++..+ .++.++|||++|+++|+|++.++..+|+
T Consensus 277 ~f~~~~~~~~~~~~~a~~~L~~~aE~aK~~LS~~~-~~~i~i~~~~~d~~g~~~~~~~itR~efe~l~~~l~~~~~~~i~ 355 (663)
T PTZ00400 277 EFKKQQGIDLKKDKLALQRLREAAETAKIELSSKT-QTEINLPFITADQSGPKHLQIKLSRAKLEELTHDLLKKTIEPCE 355 (663)
T ss_pred HhhhhcCCCcccCHHHHHHHHHHHHHHHHHcCCCC-ceEEEEEeeccCCCCceEEEEEECHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999976 467888877644 4789999999999999999999999999
Q ss_pred HHHHHcCCCCCCccEEEEecCCCCcHHHHHHHHHhcCCCCCCCCChhHHHHhHHHHHcchhcCCccccccEEEEecccce
Q psy740 266 DCLEKSKLALSDIHSVEIVGGSSRIPAIKGLIEKIFQKTPSTTLNQDEAVARGCALQCAMLSPAVRVRDFSVTDLQVYPV 345 (763)
Q Consensus 266 ~~l~~a~~~~~~i~~V~lvGGssriP~v~~~l~~~fg~~~~~~~n~deaVa~GAa~~aa~ls~~~~~~~~~~~d~~~~~i 345 (763)
++|+++++.+.+|+.|+||||+||||+|+++|+++||.++..++|||+|||+|||++|+++++. ++++.+.|++||+|
T Consensus 356 ~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f~~~~~~~~npdeaVA~GAAi~aa~l~~~--~~~~~~~dv~p~sl 433 (663)
T PTZ00400 356 KCIKDAGVKKDELNDVILVGGMTRMPKVSETVKKIFGKEPSKGVNPDEAVAMGAAIQAGVLKGE--IKDLLLLDVTPLSL 433 (663)
T ss_pred HHHHHcCCCHHHCcEEEEECCccCChHHHHHHHHHhCCCcccCCCCccceeeccHHHHHhhcCC--ccceEEEeccccce
Confidence 9999999999999999999999999999999999999989999999999999999999999986 67899999999999
Q ss_pred EEEecCCCCCCCCCCceEEEecCCCCcCceEEEEeeeC----CCEEEEEEEecC-cCCCCcccceEEeeccCCCCCCCcc
Q psy740 346 VMEWDPSPNEPKDSKNFITVFPEMHAAPFSKKMTFYQN----KPFAIQLYYEGN-VPYPSKFIGKYQINDVKPGPDNASQ 420 (763)
Q Consensus 346 ~i~~~~~~~~~~~~~~~~~l~~~~~~iP~~k~~~f~~~----~~~~i~i~~~~~-~~~~~~~ig~~~i~~i~~~~~g~~~ 420 (763)
|+++.+ + .+.+||++|+++|++++.+|++. ..+.|.+|+|+. ++.+|..||+|.|.|+++.+.|.+
T Consensus 434 gi~~~~----g----~~~~ii~~~t~iP~~~~~~f~~~~d~q~~~~i~i~ege~~~~~~n~~lg~~~i~~i~~~~~g~~- 504 (663)
T PTZ00400 434 GIETLG----G----VFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVFQGEREMAADNKLLGQFDLVGIPPAPRGVP- 504 (663)
T ss_pred EEEecC----C----eeEEEEecCccCCccceeeeeeccCCCceEEEEEEEecCccCCcCceeEEEEEcCCCCCCCCCc-
Confidence 999875 1 34589999999999999999764 248899999987 778889999999999999998876
Q ss_pred eEEEEEEEcCCccEEEEEeeeeEeeccCCCCCCCcccccccccccccccCCccccccccccccCCcchhHhHHHhhhccc
Q psy740 421 KVTVKVRVNMDGVIGVIAASMVEKVENSGDTESMDVENTEEENGQKQEAGSENTENKAEKTQEGQSEDAEKKAAEAKKKV 500 (763)
Q Consensus 421 ~i~v~~~vd~~Gil~v~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~K~ 500 (763)
.|+|+|.+|.||+|+|++.+ ..
T Consensus 505 ~i~v~f~id~~Gil~v~a~~---~~------------------------------------------------------- 526 (663)
T PTZ00400 505 QIEVTFDVDANGIMNISAVD---KS------------------------------------------------------- 526 (663)
T ss_pred eEEEEEEECCCCCEEEEEEe---cc-------------------------------------------------------
Confidence 69999999999999998741 10
Q ss_pred cceeeeeeEeecCCCCCHHHHHHHHHHHHhhhhchHHHHHHHHHhhhhHHHHHHHHHHccchHHhhccCCHHHHHHHHHH
Q psy740 501 VSKTLDLTISATTHGLSPEQLNAHTELEGKMIADDKLEKERIDARNCLEEYVYDLRNKLGSEEEFALYIAADDASKLSTQ 580 (763)
Q Consensus 501 ~~k~~~~~i~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~ea~N~LEs~iy~~R~~L~~~~~~~~~~teeer~~l~~~ 580 (763)
..+...+++.. ..+|+.++++++++.+.+|..+|+.++++.+++|+||+|||.+|++|. + |..++++++|+.|.+.
T Consensus 527 ~~~~~~~~i~~-~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~eakN~lEs~iy~~r~~l~--e-~~~~~s~~ere~i~~~ 602 (663)
T PTZ00400 527 TGKKQEITIQS-SGGLSDEEIEKMVKEAEEYKEQDEKKKELVDAKNEAETLIYSVEKQLS--D-LKDKISDADKDELKQK 602 (663)
T ss_pred CCcEEEEEeec-cccccHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--H-HhhhCCHHHHHHHHHH
Confidence 01223344443 357999999999999999999999999999999999999999999996 3 9999999999999999
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy740 581 LDETENWLYEEGADVNKSVYISKLDELKAIGEKIRQRK 618 (763)
Q Consensus 581 l~e~~~WL~~~g~~a~~~~~~~kl~eL~~~~~pi~~R~ 618 (763)
|+++++|||++ +.+.|++++++|++++.++..++
T Consensus 603 l~~~~~WL~~~----d~~~i~~k~~eL~~~l~~l~~k~ 636 (663)
T PTZ00400 603 ITKLRSTLSSE----DVDSIKDKTKQLQEASWKISQQA 636 (663)
T ss_pred HHHHHHHHhcC----CHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999965 57899999999999999998643
No 7
>PRK13411 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=8.4e-88 Score=783.24 Aligned_cols=534 Identities=28% Similarity=0.458 Sum_probs=483.0
Q ss_pred cceEEEEcCccceEEEEEECCceeEEcCCCCCccccEEEEeeC-CceEEcHHHHHhHhhccCchHHHhhhhhCCCCCChH
Q psy740 4 MSVIGIDFGNESCFIAAARAGGIETIANDYSLRATPSCVAFSD-RNRILGVAAKNQTVTNMKNTIHGFKRLIGREFKDPH 82 (763)
Q Consensus 4 ~~viGID~GTt~s~va~~~~g~~~iv~n~~~~r~~PS~V~~~~-~~~~~G~~A~~~~~~~p~~~~~~~KrllG~~~~d~~ 82 (763)
..+||||||||||+||++++|.+.+|.|.+|+|.+||+|+|.+ ++++||..|+.++.++|.++++++|||||+.++|+.
T Consensus 2 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~ 81 (653)
T PRK13411 2 GKVIGIDLGTTNSCVAVLEGGKPIVIPNSEGGRTTPSIVGFGKSGDRLVGQLAKRQAVTNAENTVYSIKRFIGRRWDDTE 81 (653)
T ss_pred CcEEEEEeCcccEEEEEEECCEEEEEECCCCCccCceEEEEeCCCCEEEcHHHHHhhhhCcccchHHHHHHhCCCccchh
Confidence 3699999999999999999999999999999999999999975 489999999999999999999999999999998864
Q ss_pred HHhhhhcCCceeeeCCCCCeEEEEEecCCceeeCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEeecccCCHHHHHHHHHH
Q psy740 83 VQDELKFLPYNVSENPDGSIGIKVKYLNEDRVFTPEQITAMLLTKLRETSEIALQCNISDCVLSVPSFYTNAERKALLDA 162 (763)
Q Consensus 83 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~peev~a~~L~~lk~~ae~~~~~~v~~~VITVPa~f~~~qR~al~~A 162 (763)
...+++||.++...+|.+.+.+. +..++|++|++++|++|++.|+.++|.++.++|||||+||++.||+++++|
T Consensus 82 --~~~~~~~~~~v~~~~~~~~~~i~----~~~~~peei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~A 155 (653)
T PRK13411 82 --EERSRVPYTCVKGRDDTVNVQIR----GRNYTPQEISAMILQKLKQDAEAYLGEPVTQAVITVPAYFTDAQRQATKDA 155 (653)
T ss_pred --HHhhcCCceEEecCCCceEEEEC----CEEECHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCcHHHHHHHHH
Confidence 45688999999888888777764 468999999999999999999999999999999999999999999999999
Q ss_pred Hh------------------------------------------------------HhhhcCCCCCchhHHHHHHHHHHH
Q psy740 163 AK------------------------------------------------------IIASAANPYLGGRNIDYKLAKHFS 188 (763)
Q Consensus 163 a~------------------------------------------------------vl~~~~d~~lGG~d~D~~l~~~~~ 188 (763)
|+ |++++||.+|||++||+.|++||.
T Consensus 156 a~~AGl~v~~li~EPtAAAl~y~~~~~~~~~~vlV~DlGgGT~dvsi~~~~~~~~~V~at~gd~~LGG~dfD~~l~~~l~ 235 (653)
T PRK13411 156 GTIAGLEVLRIINEPTAAALAYGLDKQDQEQLILVFDLGGGTFDVSILQLGDGVFEVKATAGNNHLGGDDFDNCIVDWLV 235 (653)
T ss_pred HHHcCCCeEEEecchHHHHHHhcccccCCCCEEEEEEcCCCeEEEEEEEEeCCEEEEEEEecCCCcCHHHHHHHHHHHHH
Confidence 99 778899999999999999999999
Q ss_pred HHHHhhcCCCCCCCHHHHHHHHHHHHHHHHhccCCCceeeEEeeccccC----cccEEEeeHHHHHHHhHHHHHHHHHHH
Q psy740 189 QEFKQKYNIEPESNPRAFLRLLTEVEKLKKQMSANSTKLPFGIECFMND----IDVKGEMCRSEMEELCKDVFENVEKTL 264 (763)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~~~~~~ie~l~~~----~d~~~~itr~~fe~l~~~l~~~i~~~i 264 (763)
++|..++++++..+++++.||+.+||++|+.||.+. .+.+.+++++.+ .++.+.|||++|+++|+|+++++..+|
T Consensus 236 ~~f~~~~~~d~~~~~~~~~rL~~~aE~aK~~LS~~~-~~~i~i~~~~~d~~~~~~~~~~itR~~fe~l~~~l~~~~~~~i 314 (653)
T PRK13411 236 ENFQQQEGIDLSQDKMALQRLREAAEKAKIELSSML-TTSINLPFITADETGPKHLEMELTRAKFEELTKDLVEATIEPM 314 (653)
T ss_pred HHHHHhhCCCcccCHHHHHHHHHHHHHHHHhcCCCC-ceEEEEeeeccCCCCCeeEEEEEcHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999976 477888876543 578899999999999999999999999
Q ss_pred HHHHHHcCCCCCCccEEEEecCCCCcHHHHHHHHHhcC-CCCCCCCChhHHHHhHHHHHcchhcCCccccccEEEEeccc
Q psy740 265 KDCLEKSKLALSDIHSVEIVGGSSRIPAIKGLIEKIFQ-KTPSTTLNQDEAVARGCALQCAMLSPAVRVRDFSVTDLQVY 343 (763)
Q Consensus 265 ~~~l~~a~~~~~~i~~V~lvGGssriP~v~~~l~~~fg-~~~~~~~n~deaVa~GAa~~aa~ls~~~~~~~~~~~d~~~~ 343 (763)
+++|+++++.+.+|+.|+||||+||||+||++|+++|| ..+..++|||+|||+|||++|+++++. ++++.+.|++||
T Consensus 315 ~~~L~~a~~~~~~id~ViLvGGssriP~v~~~l~~~f~~~~~~~~~npdeaVA~GAAi~aa~l~~~--~~~~~~~dv~p~ 392 (653)
T PRK13411 315 QQALKDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDRSVNPDEAVALGAAIQAGVLGGE--VKDLLLLDVTPL 392 (653)
T ss_pred HHHHHHcCCCHHHCcEEEEECCCCCcchHHHHHHHHcCCcCcCCCCCchHHHHHHHHHHHHhhcCC--ccceeeeecccc
Confidence 99999999999999999999999999999999999996 578899999999999999999999986 788999999999
Q ss_pred ceEEEecCCCCCCCCCCceEEEecCCCCcCceEEEEeeeCC----CEEEEEEEecC-cCCCCcccceEEeeccCCCCCCC
Q psy740 344 PVVMEWDPSPNEPKDSKNFITVFPEMHAAPFSKKMTFYQNK----PFAIQLYYEGN-VPYPSKFIGKYQINDVKPGPDNA 418 (763)
Q Consensus 344 ~i~i~~~~~~~~~~~~~~~~~l~~~~~~iP~~k~~~f~~~~----~~~i~i~~~~~-~~~~~~~ig~~~i~~i~~~~~g~ 418 (763)
+||+++.+. .+.+||++|++||++++.+|++.. .+.|.+|+|+. .+.+|..||.|.|.|+++.+.|.
T Consensus 393 slgi~~~~~--------~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~ 464 (653)
T PRK13411 393 SLGIETLGE--------VFTKIIERNTTIPTSKSQVFSTATDGQTSVEIHVLQGERAMAKDNKSLGKFLLTGIPPAPRGV 464 (653)
T ss_pred eeeEEecCC--------ceEEEEECCCcccceeeEEEEeccCCCeEEEEEEEEecCcccccCceeeEEEEcCCCCCCCCC
Confidence 999998751 355899999999999999997632 37889999987 77889999999999999999887
Q ss_pred cceEEEEEEEcCCccEEEEEeeeeEeeccCCCCCCCcccccccccccccccCCccccccccccccCCcchhHhHHHhhhc
Q psy740 419 SQKVTVKVRVNMDGVIGVIAASMVEKVENSGDTESMDVENTEEENGQKQEAGSENTENKAEKTQEGQSEDAEKKAAEAKK 498 (763)
Q Consensus 419 ~~~i~v~~~vd~~Gil~v~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (763)
+ .|+|+|.+|.||+|+|++.+ ...
T Consensus 465 ~-~i~v~f~id~~Gil~v~a~d---~~t---------------------------------------------------- 488 (653)
T PRK13411 465 P-QIEVSFEIDVNGILKVSAQD---QGT---------------------------------------------------- 488 (653)
T ss_pred c-cEEEEEEECCCCeEEEEEee---ccC----------------------------------------------------
Confidence 6 59999999999999999741 100
Q ss_pred cccceeeeeeEeecCCCCCHHHHHHHHHHHHhhhhchHHHHHHHHHhhhhHHHHHHHHHHccchHHhhccCCHHHHHHHH
Q psy740 499 KVVSKTLDLTISATTHGLSPEQLNAHTELEGKMIADDKLEKERIDARNCLEEYVYDLRNKLGSEEEFALYIAADDASKLS 578 (763)
Q Consensus 499 K~~~k~~~~~i~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~ea~N~LEs~iy~~R~~L~~~~~~~~~~teeer~~l~ 578 (763)
.+...+.+.. ..+|+.++++++++++.+|..+|+.++++.+++|.||+|||.+|++|. + +..++++++|+++.
T Consensus 489 ---~~~~~~~i~~-~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~eakN~lEs~iy~~r~~l~--~-~~~~~~~~er~~i~ 561 (653)
T PRK13411 489 ---GREQSIRITN-TGGLSSNEIERMRQEAEKYAEEDRRRKQLIELKNQADSLLYSYESTLK--E-NGELISEELKQRAE 561 (653)
T ss_pred ---CceEeeEEec-cccchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH--H-hhccCCHHHHHHHH
Confidence 1112233332 457999999999999999999999999999999999999999999996 3 68999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy740 579 TQLDETENWLYEEGADVNKSVYISKLDELKAIGEKIRQRKV 619 (763)
Q Consensus 579 ~~l~e~~~WL~~~g~~a~~~~~~~kl~eL~~~~~pi~~R~~ 619 (763)
..|+++++|||+ .+++.++|++++++|++.+.|+..++.
T Consensus 562 ~~l~~~~~wL~~--~~~~~~~~~~~~~el~~~~~~i~~~~y 600 (653)
T PRK13411 562 QKVEQLEAALTD--PNISLEELKQQLEEFQQALLAIGAEVY 600 (653)
T ss_pred HHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999997 357899999999999999999997654
No 8
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=100.00 E-value=1.8e-86 Score=773.28 Aligned_cols=533 Identities=29% Similarity=0.493 Sum_probs=484.7
Q ss_pred cceEEEEcCccceEEEEEECCceeEEcCCCCCccccEEEEee-CCceEEcHHHHHhHhhccCchHHHhhhhhCCCCCChH
Q psy740 4 MSVIGIDFGNESCFIAAARAGGIETIANDYSLRATPSCVAFS-DRNRILGVAAKNQTVTNMKNTIHGFKRLIGREFKDPH 82 (763)
Q Consensus 4 ~~viGID~GTt~s~va~~~~g~~~iv~n~~~~r~~PS~V~~~-~~~~~~G~~A~~~~~~~p~~~~~~~KrllG~~~~d~~ 82 (763)
..+||||||||||+||++++|.++++.|..|+|.|||+|+|. +++++||..|+.++.++|.++++++|||||+. ++.
T Consensus 2 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~--~~~ 79 (627)
T PRK00290 2 GKIIGIDLGTTNSCVAVMEGGEPKVIENAEGARTTPSVVAFTKDGERLVGQPAKRQAVTNPENTIFSIKRLMGRR--DEE 79 (627)
T ss_pred CcEEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEeCCCCEEEcHHHHHhhhhCchhhHHHHHHHhCCC--chH
Confidence 369999999999999999999999999999999999999997 66899999999999999999999999999998 677
Q ss_pred HHhhhhcCCceeeeCCCCCeEEEEEecCCceeeCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEeecccCCHHHHHHHHHH
Q psy740 83 VQDELKFLPYNVSENPDGSIGIKVKYLNEDRVFTPEQITAMLLTKLRETSEIALQCNISDCVLSVPSFYTNAERKALLDA 162 (763)
Q Consensus 83 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~peev~a~~L~~lk~~ae~~~~~~v~~~VITVPa~f~~~qR~al~~A 162 (763)
++.+.+++||.++..++|...+.+. +..++|++|++++|++|++.|+.++|.++.++|||||+||++.||+++++|
T Consensus 80 ~~~~~~~~p~~~~~~~~~~~~~~~~----~~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~A 155 (627)
T PRK00290 80 VQKDIKLVPYKIVKADNGDAWVEID----GKKYTPQEISAMILQKLKKDAEDYLGEKVTEAVITVPAYFNDAQRQATKDA 155 (627)
T ss_pred HHHHhhcCCeEEEEcCCCceEEEEC----CEEEcHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHHH
Confidence 8888899999999988888777653 478999999999999999999999999999999999999999999999999
Q ss_pred Hh-----------------------------------------------------HhhhcCCCCCchhHHHHHHHHHHHH
Q psy740 163 AK-----------------------------------------------------IIASAANPYLGGRNIDYKLAKHFSQ 189 (763)
Q Consensus 163 a~-----------------------------------------------------vl~~~~d~~lGG~d~D~~l~~~~~~ 189 (763)
|+ |++++||.+|||++||+.|++|+.+
T Consensus 156 a~~AGl~v~~li~EptAAAl~y~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~~~~ 235 (627)
T PRK00290 156 GKIAGLEVLRIINEPTAAALAYGLDKKGDEKILVYDLGGGTFDVSILEIGDGVFEVLSTNGDTHLGGDDFDQRIIDYLAD 235 (627)
T ss_pred HHHcCCceEEEecchHHHHHHhhhccCCCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCcChHHHHHHHHHHHHH
Confidence 98 7788899999999999999999999
Q ss_pred HHHhhcCCCCCCCHHHHHHHHHHHHHHHHhccCCCceeeEEeeccccC----cccEEEeeHHHHHHHhHHHHHHHHHHHH
Q psy740 190 EFKQKYNIEPESNPRAFLRLLTEVEKLKKQMSANSTKLPFGIECFMND----IDVKGEMCRSEMEELCKDVFENVEKTLK 265 (763)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~~~~~~ie~l~~~----~d~~~~itr~~fe~l~~~l~~~i~~~i~ 265 (763)
+|..+++.++..+++++.||+.+||++|+.||.+. .+.+.+++++.+ .++.++|||++|+++|+++++++..+|+
T Consensus 236 ~~~~~~~~~~~~~~~~~~rL~~~ae~aK~~LS~~~-~~~i~i~~~~~d~~g~~~~~~~itR~~fe~l~~~l~~~~~~~i~ 314 (627)
T PRK00290 236 EFKKENGIDLRKDKMALQRLKEAAEKAKIELSSAQ-QTEINLPFITADASGPKHLEIKLTRAKFEELTEDLVERTIEPCK 314 (627)
T ss_pred HHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCC-eEEEEEeecccCCCCCeEEEEEECHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999976 467888877643 6788999999999999999999999999
Q ss_pred HHHHHcCCCCCCccEEEEecCCCCcHHHHHHHHHhcCCCCCCCCChhHHHHhHHHHHcchhcCCccccccEEEEecccce
Q psy740 266 DCLEKSKLALSDIHSVEIVGGSSRIPAIKGLIEKIFQKTPSTTLNQDEAVARGCALQCAMLSPAVRVRDFSVTDLQVYPV 345 (763)
Q Consensus 266 ~~l~~a~~~~~~i~~V~lvGGssriP~v~~~l~~~fg~~~~~~~n~deaVa~GAa~~aa~ls~~~~~~~~~~~d~~~~~i 345 (763)
++|+.+++...+|+.|+||||+||||+|++.|+++||.++..++|||+|||+|||++|+++++. ++++.+.|++||+|
T Consensus 315 ~~l~~a~~~~~~id~ViLvGGssriP~v~~~l~~~fg~~~~~~~npdeava~GAa~~aa~l~~~--~~~~~~~d~~~~sl 392 (627)
T PRK00290 315 QALKDAGLSVSDIDEVILVGGSTRMPAVQELVKEFFGKEPNKGVNPDEVVAIGAAIQGGVLAGD--VKDVLLLDVTPLSL 392 (627)
T ss_pred HHHHHcCCChhhCcEEEEECCcCCChHHHHHHHHHhCCCCCcCcCChHHHHHhHHHHHHHhcCC--ccceeeeeccceEE
Confidence 9999999999999999999999999999999999999999999999999999999999999985 67899999999999
Q ss_pred EEEecCCCCCCCCCCceEEEecCCCCcCceEEEEeeeCC----CEEEEEEEecC-cCCCCcccceEEeeccCCCCCCCcc
Q psy740 346 VMEWDPSPNEPKDSKNFITVFPEMHAAPFSKKMTFYQNK----PFAIQLYYEGN-VPYPSKFIGKYQINDVKPGPDNASQ 420 (763)
Q Consensus 346 ~i~~~~~~~~~~~~~~~~~l~~~~~~iP~~k~~~f~~~~----~~~i~i~~~~~-~~~~~~~ig~~~i~~i~~~~~g~~~ 420 (763)
|+++.+ + .+.+||++|+++|++++.+|++.. .+.|.+|+|+. .+.+|..||+|.|.++++.+.|.+
T Consensus 393 gi~~~~----~----~~~~ii~~~t~~P~~~~~~f~~~~d~q~~~~i~v~~ge~~~~~~~~~lg~~~i~~~~~~~~g~~- 463 (627)
T PRK00290 393 GIETLG----G----VMTKLIERNTTIPTKKSQVFSTAADNQPAVTIHVLQGEREMAADNKSLGRFNLTGIPPAPRGVP- 463 (627)
T ss_pred EEEecC----C----eEEEEecCCCcCCccceEEEEecCCCcceEEEEEEEecccccCcCceEEEEEECCCCCCCCCCc-
Confidence 999865 1 355899999999999999997643 47899999987 778888999999999999988876
Q ss_pred eEEEEEEEcCCccEEEEEeeeeEeeccCCCCCCCcccccccccccccccCCccccccccccccCCcchhHhHHHhhhccc
Q psy740 421 KVTVKVRVNMDGVIGVIAASMVEKVENSGDTESMDVENTEEENGQKQEAGSENTENKAEKTQEGQSEDAEKKAAEAKKKV 500 (763)
Q Consensus 421 ~i~v~~~vd~~Gil~v~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~K~ 500 (763)
.|+|+|.+|.||+|+|++.+ ..
T Consensus 464 ~i~v~f~~d~~gil~v~a~~---~~------------------------------------------------------- 485 (627)
T PRK00290 464 QIEVTFDIDANGIVHVSAKD---KG------------------------------------------------------- 485 (627)
T ss_pred eEEEEEEECCCceEEEEEEE---cc-------------------------------------------------------
Confidence 59999999999999998742 10
Q ss_pred cceeeeeeEeecCCCCCHHHHHHHHHHHHhhhhchHHHHHHHHHhhhhHHHHHHHHHHccchHHhhccCCHHHHHHHHHH
Q psy740 501 VSKTLDLTISATTHGLSPEQLNAHTELEGKMIADDKLEKERIDARNCLEEYVYDLRNKLGSEEEFALYIAADDASKLSTQ 580 (763)
Q Consensus 501 ~~k~~~~~i~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~ea~N~LEs~iy~~R~~L~~~~~~~~~~teeer~~l~~~ 580 (763)
..+...+.+.. ..+|+.++++++++.+.+|...|+..+++.+++|+||+|||.+|++|. .+..++++++|++|.+.
T Consensus 486 ~~~~~~~~i~~-~~~ls~e~i~~~~~~~~~~~~~d~~~~~~~eakN~le~~i~~~~~~l~---~~~~~~~~~e~~~i~~~ 561 (627)
T PRK00290 486 TGKEQSITITA-SSGLSDEEIERMVKDAEANAEEDKKRKELVEARNQADSLIYQTEKTLK---ELGDKVPADEKEKIEAA 561 (627)
T ss_pred CCceeEEEecc-ccccCHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHH---HHhccCCHHHHHHHHHH
Confidence 01222334433 357999999999999999999999999999999999999999999996 48899999999999999
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q psy740 581 LDETENWLYEEGADVNKSVYISKLDELKAIGEKIRQRKVD 620 (763)
Q Consensus 581 l~e~~~WL~~~g~~a~~~~~~~kl~eL~~~~~pi~~R~~E 620 (763)
|+++++|||++ +.+.|++++++|+++++|+..|+..
T Consensus 562 l~~~~~wL~~~----~~~~i~~k~~~L~~~~~~~~~~~~~ 597 (627)
T PRK00290 562 IKELKEALKGE----DKEAIKAKTEELTQASQKLGEAMYQ 597 (627)
T ss_pred HHHHHHHHhcC----CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999965 6789999999999999999987643
No 9
>PLN03184 chloroplast Hsp70; Provisional
Probab=100.00 E-value=1.8e-86 Score=772.48 Aligned_cols=533 Identities=26% Similarity=0.463 Sum_probs=478.2
Q ss_pred cceEEEEcCccceEEEEEECCceeEEcCCCCCccccEEEEeeC-CceEEcHHHHHhHhhccCchHHHhhhhhCCCCCChH
Q psy740 4 MSVIGIDFGNESCFIAAARAGGIETIANDYSLRATPSCVAFSD-RNRILGVAAKNQTVTNMKNTIHGFKRLIGREFKDPH 82 (763)
Q Consensus 4 ~~viGID~GTt~s~va~~~~g~~~iv~n~~~~r~~PS~V~~~~-~~~~~G~~A~~~~~~~p~~~~~~~KrllG~~~~d~~ 82 (763)
..+||||||||||+||++++|.+.+|.|.+|+|.|||+|+|.. ++++||..|+.++.++|.++++++|||||+.+.+
T Consensus 39 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d-- 116 (673)
T PLN03184 39 EKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSE-- 116 (673)
T ss_pred CCEEEEEeCcCcEEEEEEECCeEEEEECCCCCeecceEEEEcCCCCEEECHHHHHhhhhCchhhhHHHHHhhCCCcch--
Confidence 4699999999999999999999999999999999999999975 4799999999999999999999999999999976
Q ss_pred HHhhhhcCCceeeeCCCCCeEEEEEecCCceeeCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEeecccCCHHHHHHHHHH
Q psy740 83 VQDELKFLPYNVSENPDGSIGIKVKYLNEDRVFTPEQITAMLLTKLRETSEIALQCNISDCVLSVPSFYTNAERKALLDA 162 (763)
Q Consensus 83 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~peev~a~~L~~lk~~ae~~~~~~v~~~VITVPa~f~~~qR~al~~A 162 (763)
++...+.+||.++..++|.+.+.+... +..|+|++|++++|++|++.|+.+++..+.++|||||+||++.||+|+++|
T Consensus 117 ~~~~~~~~~~~v~~~~~~~v~~~~~~~--~~~~speei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~A 194 (673)
T PLN03184 117 VDEESKQVSYRVVRDENGNVKLDCPAI--GKQFAAEEISAQVLRKLVDDASKFLNDKVTKAVITVPAYFNDSQRTATKDA 194 (673)
T ss_pred hhhhhhcCCeEEEecCCCcEEEEEecC--CeEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHH
Confidence 456778899999988889888876543 468999999999999999999999999999999999999999999999999
Q ss_pred Hh-----------------------------------------------------HhhhcCCCCCchhHHHHHHHHHHHH
Q psy740 163 AK-----------------------------------------------------IIASAANPYLGGRNIDYKLAKHFSQ 189 (763)
Q Consensus 163 a~-----------------------------------------------------vl~~~~d~~lGG~d~D~~l~~~~~~ 189 (763)
|+ |++++||.+|||++||+.|++||.+
T Consensus 195 a~~AGl~v~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~DvSi~~~~~~~~eVla~~gd~~LGG~dfD~~L~~~~~~ 274 (673)
T PLN03184 195 GRIAGLEVLRIINEPTAASLAYGFEKKSNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLAS 274 (673)
T ss_pred HHHCCCCeEEEeCcHHHHHHHhhcccCCCCEEEEEECCCCeEEEEEEEecCCEEEEEEecCCCccCHHHHHHHHHHHHHH
Confidence 99 7888999999999999999999999
Q ss_pred HHHhhcCCCCCCCHHHHHHHHHHHHHHHHhccCCCceeeEEeecccc----CcccEEEeeHHHHHHHhHHHHHHHHHHHH
Q psy740 190 EFKQKYNIEPESNPRAFLRLLTEVEKLKKQMSANSTKLPFGIECFMN----DIDVKGEMCRSEMEELCKDVFENVEKTLK 265 (763)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~~~~~~ie~l~~----~~d~~~~itr~~fe~l~~~l~~~i~~~i~ 265 (763)
+|..+++.++..+++++.||+.+||++|+.||.+. .+.+.++++.. +.+++++|||++|+++|.++++++..+|+
T Consensus 275 ~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~-~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~r~~~~i~ 353 (673)
T PLN03184 275 NFKKDEGIDLLKDKQALQRLTEAAEKAKIELSSLT-QTSISLPFITATADGPKHIDTTLTRAKFEELCSDLLDRCKTPVE 353 (673)
T ss_pred HHHhhcCCCcccCHHHHHHHHHHHHHHHHhcCCCC-cceEEEEeeeccCCCCceEEEEECHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999976 46778876643 35788999999999999999999999999
Q ss_pred HHHHHcCCCCCCccEEEEecCCCCcHHHHHHHHHhcCCCCCCCCChhHHHHhHHHHHcchhcCCccccccEEEEecccce
Q psy740 266 DCLEKSKLALSDIHSVEIVGGSSRIPAIKGLIEKIFQKTPSTTLNQDEAVARGCALQCAMLSPAVRVRDFSVTDLQVYPV 345 (763)
Q Consensus 266 ~~l~~a~~~~~~i~~V~lvGGssriP~v~~~l~~~fg~~~~~~~n~deaVa~GAa~~aa~ls~~~~~~~~~~~d~~~~~i 345 (763)
++|+++++.+.+|+.|+||||+||||+||++|+++||..+..++|||+|||+|||++|+++++. ++++.+.|++||+|
T Consensus 354 ~~L~~a~~~~~dId~ViLvGGssriP~V~~~i~~~fg~~~~~~~npdeaVA~GAAi~aa~ls~~--~~~~~~~dv~p~sl 431 (673)
T PLN03184 354 NALRDAKLSFKDIDEVILVGGSTRIPAVQELVKKLTGKDPNVTVNPDEVVALGAAVQAGVLAGE--VSDIVLLDVTPLSL 431 (673)
T ss_pred HHHHHcCCChhHccEEEEECCccccHHHHHHHHHHhCCCcccccCcchHHHHHHHHHHHHhccC--ccceEEEecccccc
Confidence 9999999999999999999999999999999999999888899999999999999999999985 67899999999999
Q ss_pred EEEecCCCCCCCCCCceEEEecCCCCcCceEEEEeeeC--C--CEEEEEEEecC-cCCCCcccceEEeeccCCCCCCCcc
Q psy740 346 VMEWDPSPNEPKDSKNFITVFPEMHAAPFSKKMTFYQN--K--PFAIQLYYEGN-VPYPSKFIGKYQINDVKPGPDNASQ 420 (763)
Q Consensus 346 ~i~~~~~~~~~~~~~~~~~l~~~~~~iP~~k~~~f~~~--~--~~~i~i~~~~~-~~~~~~~ig~~~i~~i~~~~~g~~~ 420 (763)
|+++.+ + .+.+|||+|+++|++++.+|++. . .+.|.+|+|+. +..+|..||+|.|.++++.+.|.+
T Consensus 432 gi~~~~----~----~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~i~~ge~~~~~~n~~lg~~~i~~i~~~~~g~~- 502 (673)
T PLN03184 432 GLETLG----G----VMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVP- 502 (673)
T ss_pred eEEecC----C----eeEEEEeCCCccceecceEeeeecCCCcEEEEEEEeecccccccCceEEEEEEeCCCCCCCCCc-
Confidence 999975 1 34589999999999999999764 2 36778888876 778899999999999999998876
Q ss_pred eEEEEEEEcCCccEEEEEeeeeEeeccCCCCCCCcccccccccccccccCCccccccccccccCCcchhHhHHHhhhccc
Q psy740 421 KVTVKVRVNMDGVIGVIAASMVEKVENSGDTESMDVENTEEENGQKQEAGSENTENKAEKTQEGQSEDAEKKAAEAKKKV 500 (763)
Q Consensus 421 ~i~v~~~vd~~Gil~v~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~K~ 500 (763)
.|+|+|.+|.||+|+|++.+ ..
T Consensus 503 ~i~v~f~id~~GiL~V~a~~---~~------------------------------------------------------- 524 (673)
T PLN03184 503 QIEVKFDIDANGILSVSATD---KG------------------------------------------------------- 524 (673)
T ss_pred eEEEEEEeCCCCeEEEEEEe---cC-------------------------------------------------------
Confidence 59999999999999999852 10
Q ss_pred cceeeeeeEeecCCCCCHHHHHHHHHHHHhhhhchHHHHHHHHHhhhhHHHHHHHHHHccchHHhhccCCHHHHHHHHHH
Q psy740 501 VSKTLDLTISATTHGLSPEQLNAHTELEGKMIADDKLEKERIDARNCLEEYVYDLRNKLGSEEEFALYIAADDASKLSTQ 580 (763)
Q Consensus 501 ~~k~~~~~i~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~ea~N~LEs~iy~~R~~L~~~~~~~~~~teeer~~l~~~ 580 (763)
..+...+.+.. ..+||.++++++++.+.+|..+|+.++++.+++|.||+|||.+|++|. .|..++++++|++|.+.
T Consensus 525 t~~~~~~~i~~-~~~ls~eei~~~~~~~~~~~~~D~~~~~~~eakN~lE~~iy~~r~~l~---e~~~~~~~eer~~l~~~ 600 (673)
T PLN03184 525 TGKKQDITITG-ASTLPKDEVERMVQEAEKFAKEDKEKRDAVDTKNQADSVVYQTEKQLK---ELGDKVPADVKEKVEAK 600 (673)
T ss_pred CCeEEEEEecc-cccccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHHHH---HHhhhCCHHHHHHHHHH
Confidence 01222344432 457999999999999999999999999999999999999999999995 48899999999999999
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy740 581 LDETENWLYEEGADVNKSVYISKLDELKAIGEKIRQRK 618 (763)
Q Consensus 581 l~e~~~WL~~~g~~a~~~~~~~kl~eL~~~~~pi~~R~ 618 (763)
|+++++|||.+ +.+.+++++++|.+...++..++
T Consensus 601 l~~~e~wL~~~----d~~~ik~~~~~l~~~l~~l~~~~ 634 (673)
T PLN03184 601 LKELKDAIASG----STQKMKDAMAALNQEVMQIGQSL 634 (673)
T ss_pred HHHHHHHHhcC----CHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999975 45678888888888888777654
No 10
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=100.00 E-value=1.8e-85 Score=757.50 Aligned_cols=534 Identities=26% Similarity=0.450 Sum_probs=484.6
Q ss_pred cceEEEEcCccceEEEEEECCceeEEcCCCCCccccEEEEeeCCceEEcHHHHHhHhhccCchHHHhhhhhCCCCCChHH
Q psy740 4 MSVIGIDFGNESCFIAAARAGGIETIANDYSLRATPSCVAFSDRNRILGVAAKNQTVTNMKNTIHGFKRLIGREFKDPHV 83 (763)
Q Consensus 4 ~~viGID~GTt~s~va~~~~g~~~iv~n~~~~r~~PS~V~~~~~~~~~G~~A~~~~~~~p~~~~~~~KrllG~~~~d~~~ 83 (763)
..+||||||||||+||++++|+++++.|..|.|.|||+|+|.+++++||..|+.++..+|.++++++||+||+.++++.+
T Consensus 27 ~~viGIDLGTTnS~vA~~~~~~~~ii~n~~g~r~tPS~V~f~~~~~lvG~~Ak~~~~~~p~~ti~~~KRliG~~~~d~~v 106 (657)
T PTZ00186 27 GDVIGVDLGTTYSCVATMDGDKARVLENSEGFRTTPSVVAFKGSEKLVGLAAKRQAITNPQSTFYAVKRLIGRRFEDEHI 106 (657)
T ss_pred ceEEEEEeCcCeEEEEEEeCCceEEeecCCCCcccceEEEECCCCEEEcHHHHHhhhhCchhHHHHHHHHhccccccHHH
Confidence 35999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhcCCceeeeCCCCCeEEEEEecCCceeeCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEeecccCCHHHHHHHHHHH
Q psy740 84 QDELKFLPYNVSENPDGSIGIKVKYLNEDRVFTPEQITAMLLTKLRETSEIALQCNISDCVLSVPSFYTNAERKALLDAA 163 (763)
Q Consensus 84 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~peev~a~~L~~lk~~ae~~~~~~v~~~VITVPa~f~~~qR~al~~Aa 163 (763)
+...+.+||.++..+++...+.. +.+..|+|++|++++|++|+..|+.++|.++.++|||||+||++.||+|+++||
T Consensus 107 ~~~~~~~p~~vv~~~~~~~~i~~---~~~~~~speeisa~iL~~Lk~~Ae~~lg~~v~~aVITVPayF~~~qR~at~~Aa 183 (657)
T PTZ00186 107 QKDIKNVPYKIVRAGNGDAWVQD---GNGKQYSPSQIGAFVLEKMKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDAG 183 (657)
T ss_pred HHhhccCcEEEEEcCCCceEEEe---CCCeEEcHHHHHHHHHHHHHHHHHHHhCCccceEEEEECCCCChHHHHHHHHHH
Confidence 99999999999988888776553 235789999999999999999999999999999999999999999999999999
Q ss_pred h-----------------------------------------------------HhhhcCCCCCchhHHHHHHHHHHHHH
Q psy740 164 K-----------------------------------------------------IIASAANPYLGGRNIDYKLAKHFSQE 190 (763)
Q Consensus 164 ~-----------------------------------------------------vl~~~~d~~lGG~d~D~~l~~~~~~~ 190 (763)
+ |++++||.+|||+|||++|++||.++
T Consensus 184 ~~AGl~v~rlInEPtAAAlayg~~~~~~~~vlV~DlGGGT~DvSil~~~~g~~~V~at~Gd~~LGG~DfD~~l~~~~~~~ 263 (657)
T PTZ00186 184 TIAGLNVIRVVNEPTAAALAYGMDKTKDSLIAVYDLGGGTFDISVLEIAGGVFEVKATNGDTHLGGEDFDLALSDYILEE 263 (657)
T ss_pred HHcCCCeEEEEcChHHHHHHHhccCCCCCEEEEEECCCCeEEEEEEEEeCCEEEEEEecCCCCCCchhHHHHHHHHHHHH
Confidence 9 88899999999999999999999999
Q ss_pred HHhhcCCCCCCCHHHHHHHHHHHHHHHHhccCCCceeeEEeeccccC----cccEEEeeHHHHHHHhHHHHHHHHHHHHH
Q psy740 191 FKQKYNIEPESNPRAFLRLLTEVEKLKKQMSANSTKLPFGIECFMND----IDVKGEMCRSEMEELCKDVFENVEKTLKD 266 (763)
Q Consensus 191 ~~~~~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~~~~~~ie~l~~~----~d~~~~itr~~fe~l~~~l~~~i~~~i~~ 266 (763)
|..+++.|+..+++++.+|+.+||++|+.||.+. .+.+.++++..+ .++.++|||++|+++|+++++++..++++
T Consensus 264 f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~-~~~i~i~~i~~~~~g~~~~~~~ItR~efe~l~~~l~~r~~~~v~~ 342 (657)
T PTZ00186 264 FRKTSGIDLSKERMALQRVREAAEKAKCELSSAM-ETEVNLPFITANADGAQHIQMHISRSKFEGITQRLIERSIAPCKQ 342 (657)
T ss_pred HhhhcCCCcccCHHHHHHHHHHHHHHHHHhCCCC-ceEEEEeeeccCCCCCcceEEEecHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998999999999999999999999976 467788776542 45889999999999999999999999999
Q ss_pred HHHHcCCCCCCccEEEEecCCCCcHHHHHHHHHhcCCCCCCCCChhHHHHhHHHHHcchhcCCccccccEEEEecccceE
Q psy740 267 CLEKSKLALSDIHSVEIVGGSSRIPAIKGLIEKIFQKTPSTTLNQDEAVARGCALQCAMLSPAVRVRDFSVTDLQVYPVV 346 (763)
Q Consensus 267 ~l~~a~~~~~~i~~V~lvGGssriP~v~~~l~~~fg~~~~~~~n~deaVa~GAa~~aa~ls~~~~~~~~~~~d~~~~~i~ 346 (763)
+|+++++.+.+|+.|+|||||||||.|+++|+++||..+..++|||||||+|||++|+++++. ++++.+.|++||+||
T Consensus 343 ~L~~a~~~~~dId~VvLVGGssriP~V~~~l~~~fg~~~~~~~nPdeaVA~GAAi~a~~l~~~--~~~~~l~Dv~p~slg 420 (657)
T PTZ00186 343 CMKDAGVELKEINDVVLVGGMTRMPKVVEEVKKFFQKDPFRGVNPDEAVALGAATLGGVLRGD--VKGLVLLDVTPLSLG 420 (657)
T ss_pred HHHHcCCChhhCCEEEEECCcccChHHHHHHHHHhCCCccccCCCchHHHHhHHHHHHHhccc--cCceEEEeecccccc
Confidence 999999999999999999999999999999999999888899999999999999999999986 578999999999999
Q ss_pred EEecCCCCCCCCCCceEEEecCCCCcCceEEEEeeeC----CCEEEEEEEecC-cCCCCcccceEEeeccCCCCCCCcce
Q psy740 347 MEWDPSPNEPKDSKNFITVFPEMHAAPFSKKMTFYQN----KPFAIQLYYEGN-VPYPSKFIGKYQINDVKPGPDNASQK 421 (763)
Q Consensus 347 i~~~~~~~~~~~~~~~~~l~~~~~~iP~~k~~~f~~~----~~~~i~i~~~~~-~~~~~~~ig~~~i~~i~~~~~g~~~~ 421 (763)
|++.+ + .+.+||++|++||++++.+|++. ..+.|.||+|+. ++.+|..||+|.|.|+|+.++|.+ .
T Consensus 421 ie~~~----g----~~~~iI~rnt~iP~~~~~~f~t~~dnQ~~v~i~i~qGe~~~~~~n~~lg~~~l~~ip~~~~G~~-~ 491 (657)
T PTZ00186 421 IETLG----G----VFTRMIPKNTTIPTKKSQTFSTAADNQTQVGIKVFQGEREMAADNQMMGQFDLVGIPPAPRGVP-Q 491 (657)
T ss_pred ceecC----C----EEEEEEeCCCEeeEEEeeccccccCCCceEEEEEEEecccccccccccceEEEcCCCCCCCCCC-c
Confidence 99875 1 34489999999999999999764 248999999987 888999999999999999999987 5
Q ss_pred EEEEEEEcCCccEEEEEeeeeEeeccCCCCCCCcccccccccccccccCCccccccccccccCCcchhHhHHHhhhcccc
Q psy740 422 VTVKVRVNMDGVIGVIAASMVEKVENSGDTESMDVENTEEENGQKQEAGSENTENKAEKTQEGQSEDAEKKAAEAKKKVV 501 (763)
Q Consensus 422 i~v~~~vd~~Gil~v~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~K~~ 501 (763)
|+|+|.+|.||+|+|++.+. . .
T Consensus 492 I~Vtf~iD~nGiL~V~a~d~---~-------------------------------------------------------t 513 (657)
T PTZ00186 492 IEVTFDIDANGICHVTAKDK---A-------------------------------------------------------T 513 (657)
T ss_pred EEEEEEEcCCCEEEEEEEEc---c-------------------------------------------------------C
Confidence 99999999999999998521 1 1
Q ss_pred ceeeeeeEeecCCCCCHHHHHHHHHHHHhhhhchHHHHHHHHHhhhhHHHHHHHHHHccchHHhhccCCHHHHHHHHHHH
Q psy740 502 SKTLDLTISATTHGLSPEQLNAHTELEGKMIADDKLEKERIDARNCLEEYVYDLRNKLGSEEEFALYIAADDASKLSTQL 581 (763)
Q Consensus 502 ~k~~~~~i~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~ea~N~LEs~iy~~R~~L~~~~~~~~~~teeer~~l~~~l 581 (763)
.+...+.|.. ..+|+.++++++++...+....|...+++.+++|.+|+++|.++..+.+ . ..+++++++.+...+
T Consensus 514 g~~~~~~i~~-~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~ 588 (657)
T PTZ00186 514 GKTQNITITA-NGGLSKEQIEQMIRDSEQHAEADRVKRELVEVRNNAETQLTTAERQLGE---W-KYVSDAEKENVKTLV 588 (657)
T ss_pred CcEEEEEecc-CccCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh---h-ccCCHHHHHHHHHHH
Confidence 2333455543 3479999999999999999999999999999999999999999999962 2 467899999999999
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy740 582 DETENWLYEEGADVNKSVYISKLDELKAIGEKIRQR 617 (763)
Q Consensus 582 ~e~~~WL~~~g~~a~~~~~~~kl~eL~~~~~pi~~R 617 (763)
...++||.. .+.+.+.+++++++|++.+.++..+
T Consensus 589 ~~~~~~l~~--~~~~~~~~~~~~~~l~~~~~~~~~~ 622 (657)
T PTZ00186 589 AELRKAMEN--PNVAKDDLAAATDKLQKAVMECGRT 622 (657)
T ss_pred HHHHHHHhc--CCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999973 3457799999999999999998863
No 11
>CHL00094 dnaK heat shock protein 70
Probab=100.00 E-value=1.7e-85 Score=762.58 Aligned_cols=533 Identities=28% Similarity=0.471 Sum_probs=481.7
Q ss_pred cceEEEEcCccceEEEEEECCceeEEcCCCCCccccEEEEeeC-CceEEcHHHHHhHhhccCchHHHhhhhhCCCCCChH
Q psy740 4 MSVIGIDFGNESCFIAAARAGGIETIANDYSLRATPSCVAFSD-RNRILGVAAKNQTVTNMKNTIHGFKRLIGREFKDPH 82 (763)
Q Consensus 4 ~~viGID~GTt~s~va~~~~g~~~iv~n~~~~r~~PS~V~~~~-~~~~~G~~A~~~~~~~p~~~~~~~KrllG~~~~d~~ 82 (763)
+.+||||||||||+||++++|.+.+|.|..|+|.+||+|+|.+ +++++|..|+.+...+|.++++++||+||+.+.+
T Consensus 2 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~~-- 79 (621)
T CHL00094 2 GKVVGIDLGTTNSVVAVMEGGKPTVIPNAEGFRTTPSIVAYTKKGDLLVGQIAKRQAVINPENTFYSVKRFIGRKFSE-- 79 (621)
T ss_pred CceEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEcCCCCEEECHHHHHhHHhCccceehhhHHhcCCChHH--
Confidence 5799999999999999999999999999999999999999975 4799999999999999999999999999999865
Q ss_pred HHhhhhcCCceeeeCCCCCeEEEEEecCCceeeCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEeecccCCHHHHHHHHHH
Q psy740 83 VQDELKFLPYNVSENPDGSIGIKVKYLNEDRVFTPEQITAMLLTKLRETSEIALQCNISDCVLSVPSFYTNAERKALLDA 162 (763)
Q Consensus 83 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~peev~a~~L~~lk~~ae~~~~~~v~~~VITVPa~f~~~qR~al~~A 162 (763)
++...+.+||.++..++|.+.+.+... +..++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++|
T Consensus 80 ~~~~~~~~~~~v~~~~~g~i~~~~~~~--~~~~s~eei~a~iL~~l~~~ae~~lg~~v~~~VItVPa~f~~~qR~a~~~A 157 (621)
T CHL00094 80 ISEEAKQVSYKVKTDSNGNIKIECPAL--NKDFSPEEISAQVLRKLVEDASKYLGETVTQAVITVPAYFNDSQRQATKDA 157 (621)
T ss_pred HHhhhhcCCeEEEECCCCCEEEEEecC--CeEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHH
Confidence 556677899999988888888776543 468999999999999999999999999999999999999999999999999
Q ss_pred Hh-----------------------------------------------------HhhhcCCCCCchhHHHHHHHHHHHH
Q psy740 163 AK-----------------------------------------------------IIASAANPYLGGRNIDYKLAKHFSQ 189 (763)
Q Consensus 163 a~-----------------------------------------------------vl~~~~d~~lGG~d~D~~l~~~~~~ 189 (763)
|+ |++++||.+|||++||..|++||.+
T Consensus 158 a~~AGl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~~~~ 237 (621)
T CHL00094 158 GKIAGLEVLRIINEPTAASLAYGLDKKNNETILVFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDKKIVNWLIK 237 (621)
T ss_pred HHHcCCceEEEeccHHHHHHHhccccCCCCEEEEEEcCCCeEEEEEEEEcCCEEEEEEEecCCCcChHHHHHHHHHHHHH
Confidence 99 6788999999999999999999999
Q ss_pred HHHhhcCCCCCCCHHHHHHHHHHHHHHHHhccCCCceeeEEeecccc----CcccEEEeeHHHHHHHhHHHHHHHHHHHH
Q psy740 190 EFKQKYNIEPESNPRAFLRLLTEVEKLKKQMSANSTKLPFGIECFMN----DIDVKGEMCRSEMEELCKDVFENVEKTLK 265 (763)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~~~~~~ie~l~~----~~d~~~~itr~~fe~l~~~l~~~i~~~i~ 265 (763)
+|.++++.++..+++++.+|+.+||++|+.||.+. .+.+.++++.. +.++...|||++||++|+++++++..+|+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~L~~~aE~aK~~LS~~~-~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~~~~~~i~ 316 (621)
T CHL00094 238 EFKKKEGIDLSKDRQALQRLTEAAEKAKIELSNLT-QTEINLPFITATQTGPKHIEKTLTRAKFEELCSDLINRCRIPVE 316 (621)
T ss_pred HHHHHhCCCcccCHHHHHHHHHHHHHHHHhcCCCC-ceEEEEeecccCCCCCeeEEEEEcHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999876 46788887654 25788899999999999999999999999
Q ss_pred HHHHHcCCCCCCccEEEEecCCCCcHHHHHHHHHhcCCCCCCCCChhHHHHhHHHHHcchhcCCccccccEEEEecccce
Q psy740 266 DCLEKSKLALSDIHSVEIVGGSSRIPAIKGLIEKIFQKTPSTTLNQDEAVARGCALQCAMLSPAVRVRDFSVTDLQVYPV 345 (763)
Q Consensus 266 ~~l~~a~~~~~~i~~V~lvGGssriP~v~~~l~~~fg~~~~~~~n~deaVa~GAa~~aa~ls~~~~~~~~~~~d~~~~~i 345 (763)
++|+++++.+.+|+.|+||||+||||.|+++|+++||..+..++|||+|||+|||++|+++++. ++++.+.|++||+|
T Consensus 317 ~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg~~~~~~~~pdeava~GAA~~aa~ls~~--~~~~~~~d~~~~~l 394 (621)
T CHL00094 317 NALKDAKLDKSDIDEVVLVGGSTRIPAIQELVKKLLGKKPNQSVNPDEVVAIGAAVQAGVLAGE--VKDILLLDVTPLSL 394 (621)
T ss_pred HHHHHcCCChhhCcEEEEECCccCChHHHHHHHHHhCCCcCcCCCchhHHHhhhHHHHHHhcCC--ccceeeeeeeceee
Confidence 9999999999999999999999999999999999999989999999999999999999999985 67899999999999
Q ss_pred EEEecCCCCCCCCCCceEEEecCCCCcCceEEEEeeeC----CCEEEEEEEecC-cCCCCcccceEEeeccCCCCCCCcc
Q psy740 346 VMEWDPSPNEPKDSKNFITVFPEMHAAPFSKKMTFYQN----KPFAIQLYYEGN-VPYPSKFIGKYQINDVKPGPDNASQ 420 (763)
Q Consensus 346 ~i~~~~~~~~~~~~~~~~~l~~~~~~iP~~k~~~f~~~----~~~~i~i~~~~~-~~~~~~~ig~~~i~~i~~~~~g~~~ 420 (763)
|+++.+ + .+.+|||+|+++|++++.+|++. ..+.|.+|+|+. ++.+|..||+|.|.++++.+.|.+
T Consensus 395 gi~~~~----~----~~~~ii~~~t~iP~~~~~~~~~~~~~q~~v~i~i~~ge~~~~~~n~~lg~~~i~~~~~~~~g~~- 465 (621)
T CHL00094 395 GVETLG----G----VMTKIIPRNTTIPTKKSEVFSTAVDNQTNVEIHVLQGERELAKDNKSLGTFRLDGIPPAPRGVP- 465 (621)
T ss_pred eeeccC----C----EEEEEEeCCCccceeeeEEEEeccCCCcEEEEEEEeeccccCCCCCEEEEEEEeCCCCCCCCCC-
Confidence 999864 1 35589999999999999999763 358899999987 778899999999999999988876
Q ss_pred eEEEEEEEcCCccEEEEEeeeeEeeccCCCCCCCcccccccccccccccCCccccccccccccCCcchhHhHHHhhhccc
Q psy740 421 KVTVKVRVNMDGVIGVIAASMVEKVENSGDTESMDVENTEEENGQKQEAGSENTENKAEKTQEGQSEDAEKKAAEAKKKV 500 (763)
Q Consensus 421 ~i~v~~~vd~~Gil~v~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~K~ 500 (763)
.|+|+|++|.||+|+|++.+. .
T Consensus 466 ~i~v~f~id~~Gil~v~~~~~---~------------------------------------------------------- 487 (621)
T CHL00094 466 QIEVTFDIDANGILSVTAKDK---G------------------------------------------------------- 487 (621)
T ss_pred cEEEEEEECCCCeEEEEEeec---c-------------------------------------------------------
Confidence 599999999999999998521 0
Q ss_pred cceeeeeeEeecCCCCCHHHHHHHHHHHHhhhhchHHHHHHHHHhhhhHHHHHHHHHHccchHHhhccCCHHHHHHHHHH
Q psy740 501 VSKTLDLTISATTHGLSPEQLNAHTELEGKMIADDKLEKERIDARNCLEEYVYDLRNKLGSEEEFALYIAADDASKLSTQ 580 (763)
Q Consensus 501 ~~k~~~~~i~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~ea~N~LEs~iy~~R~~L~~~~~~~~~~teeer~~l~~~ 580 (763)
..+...+++.. ..+|+.++++++++++.+|...|+..+++.+++|.||+|||.+|++|. + |..++++++|+++.+.
T Consensus 488 t~~~~~~~i~~-~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~le~~i~~~~~~l~--~-~~~~~~~~~~~~~~~~ 563 (621)
T CHL00094 488 TGKEQSITIQG-ASTLPKDEVERMVKEAEKNAAEDKEKREKIDLKNQAESLCYQAEKQLK--E-LKDKISEEKKEKIENL 563 (621)
T ss_pred CCceeeeeecc-chhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHhHHHHHHHHHHHH--H-HhccCCHHHHHHHHHH
Confidence 01122333432 357999999999999999999999999999999999999999999996 3 8999999999999999
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy740 581 LDETENWLYEEGADVNKSVYISKLDELKAIGEKIRQRK 618 (763)
Q Consensus 581 l~e~~~WL~~~g~~a~~~~~~~kl~eL~~~~~pi~~R~ 618 (763)
|+++++|||++ ..+.|++++++|++.++|+..++
T Consensus 564 l~~~~~wl~~~----~~~~~~~~~~~l~~~~~~~~~kl 597 (621)
T CHL00094 564 IKKLRQALQND----NYESIKSLLEELQKALMEIGKEV 597 (621)
T ss_pred HHHHHHHHhcC----CHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999976 44799999999999999999754
No 12
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=100.00 E-value=5.7e-85 Score=758.68 Aligned_cols=528 Identities=29% Similarity=0.481 Sum_probs=477.9
Q ss_pred ceEEEEcCccceEEEEEECCceeEEcCCCCCccccEEEEeeCC-ceEEcHHHHHhHhhccCchHHHhhhhhCCCCCChHH
Q psy740 5 SVIGIDFGNESCFIAAARAGGIETIANDYSLRATPSCVAFSDR-NRILGVAAKNQTVTNMKNTIHGFKRLIGREFKDPHV 83 (763)
Q Consensus 5 ~viGID~GTt~s~va~~~~g~~~iv~n~~~~r~~PS~V~~~~~-~~~~G~~A~~~~~~~p~~~~~~~KrllG~~~~d~~~ 83 (763)
.+||||||||||+||++++|.+.++.|.+|+|.+||+|+|.++ +++||..|+.++.++|.++++++|||||+.+. .+
T Consensus 1 ~viGIDlGtt~s~va~~~~g~~~ii~n~~~~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~~~--~~ 78 (595)
T TIGR02350 1 KIIGIDLGTTNSCVAVMEGGEPVVIPNAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNPENTIYSIKRFMGRRFD--EV 78 (595)
T ss_pred CEEEEEeCcccEEEEEEECCEEEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhhhhCchhhhHHHHHHhCCCch--HH
Confidence 3799999999999999999999999999999999999999865 89999999999999999999999999999983 46
Q ss_pred HhhhhcCCceeeeCCCCCeEEEEEecCCceeeCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEeecccCCHHHHHHHHHHH
Q psy740 84 QDELKFLPYNVSENPDGSIGIKVKYLNEDRVFTPEQITAMLLTKLRETSEIALQCNISDCVLSVPSFYTNAERKALLDAA 163 (763)
Q Consensus 84 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~peev~a~~L~~lk~~ae~~~~~~v~~~VITVPa~f~~~qR~al~~Aa 163 (763)
+...+++||. +..++|.+.+.+. +..++|++|++++|++|++.|+.+++.++.++|||||+||++.||+++++||
T Consensus 79 ~~~~~~~~~~-v~~~~~~~~~~v~----~~~~~peel~a~~L~~l~~~a~~~~~~~v~~~VItVPa~f~~~qR~a~~~Aa 153 (595)
T TIGR02350 79 TEEAKRVPYK-VVGDGGDVRVKVD----GKEYTPQEISAMILQKLKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAG 153 (595)
T ss_pred HHHhhcCCee-EEcCCCceEEEEC----CEEecHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHH
Confidence 7778899999 5667888877764 5789999999999999999999999999999999999999999999999999
Q ss_pred h------------------------------------------------------HhhhcCCCCCchhHHHHHHHHHHHH
Q psy740 164 K------------------------------------------------------IIASAANPYLGGRNIDYKLAKHFSQ 189 (763)
Q Consensus 164 ~------------------------------------------------------vl~~~~d~~lGG~d~D~~l~~~~~~ 189 (763)
+ |++++|+.+|||++||+.|++||.+
T Consensus 154 ~~AGl~v~~li~EptAAAl~y~~~~~~~~~~vlV~D~Gggt~dvsv~~~~~~~~~v~~~~gd~~lGG~d~D~~l~~~~~~ 233 (595)
T TIGR02350 154 KIAGLEVLRIINEPTAAALAYGLDKSKKDEKILVFDLGGGTFDVSILEIGDGVFEVLSTAGDTHLGGDDFDQRIIDWLAD 233 (595)
T ss_pred HHcCCceEEEecchHHHHHHHhhcccCCCcEEEEEECCCCeEEEEEEEecCCeEEEEEecCCcccCchhHHHHHHHHHHH
Confidence 8 7788899999999999999999999
Q ss_pred HHHhhcCCCCCCCHHHHHHHHHHHHHHHHhccCCCceeeEEeeccccC----cccEEEeeHHHHHHHhHHHHHHHHHHHH
Q psy740 190 EFKQKYNIEPESNPRAFLRLLTEVEKLKKQMSANSTKLPFGIECFMND----IDVKGEMCRSEMEELCKDVFENVEKTLK 265 (763)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~~~~~~ie~l~~~----~d~~~~itr~~fe~l~~~l~~~i~~~i~ 265 (763)
+|.++++.++..+++++.||+.+||++|+.||.+. .+.+.++++..+ .++.++|||++|+++|+|+++++..+|+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~~-~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~l~~~~~~~i~ 312 (595)
T TIGR02350 234 EFKKEEGIDLSKDKMALQRLKEAAEKAKIELSSVL-STEINLPFITADASGPKHLEMTLTRAKFEELTADLVERTKEPVR 312 (595)
T ss_pred HHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCC-ceEEEeeecccCCCCCeeEEEEEeHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999976 467888877543 5788999999999999999999999999
Q ss_pred HHHHHcCCCCCCccEEEEecCCCCcHHHHHHHHHhcCCCCCCCCChhHHHHhHHHHHcchhcCCccccccEEEEecccce
Q psy740 266 DCLEKSKLALSDIHSVEIVGGSSRIPAIKGLIEKIFQKTPSTTLNQDEAVARGCALQCAMLSPAVRVRDFSVTDLQVYPV 345 (763)
Q Consensus 266 ~~l~~a~~~~~~i~~V~lvGGssriP~v~~~l~~~fg~~~~~~~n~deaVa~GAa~~aa~ls~~~~~~~~~~~d~~~~~i 345 (763)
++|+.+++++.+|+.|+||||+||||+|+++|+++||.++..++|||+|||+|||++|+++++. ++++.+.|++||+|
T Consensus 313 ~~l~~a~~~~~~i~~V~LvGGssriP~v~~~i~~~f~~~~~~~~~pdeava~GAa~~aa~l~~~--~~~~~~~d~~~~~i 390 (595)
T TIGR02350 313 QALKDAGLSASDIDEVILVGGSTRIPAVQELVKDFFGKEPNKSVNPDEVVAIGAAIQGGVLKGD--VKDVLLLDVTPLSL 390 (595)
T ss_pred HHHHHcCCCHhHCcEEEEECCcccChHHHHHHHHHhCCcccCCcCcHHHHHHHHHHHHHHhcCC--cccceeeeccccee
Confidence 9999999999999999999999999999999999999889999999999999999999999987 67899999999999
Q ss_pred EEEecCCCCCCCCCCceEEEecCCCCcCceEEEEeeeCC----CEEEEEEEecC-cCCCCcccceEEeeccCCCCCCCcc
Q psy740 346 VMEWDPSPNEPKDSKNFITVFPEMHAAPFSKKMTFYQNK----PFAIQLYYEGN-VPYPSKFIGKYQINDVKPGPDNASQ 420 (763)
Q Consensus 346 ~i~~~~~~~~~~~~~~~~~l~~~~~~iP~~k~~~f~~~~----~~~i~i~~~~~-~~~~~~~ig~~~i~~i~~~~~g~~~ 420 (763)
|+++.+ + .+.+||++|+++|++++.+|++.. .+.|.+|+|+. .+.+|..||+|.|.++++.+.|.+
T Consensus 391 gi~~~~----~----~~~~ii~~~~~iP~~~~~~~~~~~d~q~~v~i~i~~ge~~~~~~~~~lg~~~i~~~~~~~~g~~- 461 (595)
T TIGR02350 391 GIETLG----G----VMTKLIERNTTIPTKKSQVFSTAADNQPAVDIHVLQGERPMAADNKSLGRFELTGIPPAPRGVP- 461 (595)
T ss_pred EEEecC----C----ceEEEEeCCCcCCccceEeeeccCCCCcEEEEEEEeecccccccCcEeEEEEECCCCCCCCCCc-
Confidence 999865 1 345899999999999999997643 36888999987 778889999999999999888875
Q ss_pred eEEEEEEEcCCccEEEEEeeeeEeeccCCCCCCCcccccccccccccccCCccccccccccccCCcchhHhHHHhhhccc
Q psy740 421 KVTVKVRVNMDGVIGVIAASMVEKVENSGDTESMDVENTEEENGQKQEAGSENTENKAEKTQEGQSEDAEKKAAEAKKKV 500 (763)
Q Consensus 421 ~i~v~~~vd~~Gil~v~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~K~ 500 (763)
+|+|+|.+|.||+|+|++.+...
T Consensus 462 ~i~v~f~~d~~G~l~v~~~~~~~--------------------------------------------------------- 484 (595)
T TIGR02350 462 QIEVTFDIDANGILHVSAKDKGT--------------------------------------------------------- 484 (595)
T ss_pred eEEEEEEEcCCCeEEEEEEEccC---------------------------------------------------------
Confidence 69999999999999999752100
Q ss_pred cceeeeeeEeecCCCCCHHHHHHHHHHHHhhhhchHHHHHHHHHhhhhHHHHHHHHHHccchHHhhccCCHHHHHHHHHH
Q psy740 501 VSKTLDLTISATTHGLSPEQLNAHTELEGKMIADDKLEKERIDARNCLEEYVYDLRNKLGSEEEFALYIAADDASKLSTQ 580 (763)
Q Consensus 501 ~~k~~~~~i~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~ea~N~LEs~iy~~R~~L~~~~~~~~~~teeer~~l~~~ 580 (763)
.+...+.+.. ..+|+.++++++++++.+|...|+.++++.+++|.||+|||.+|++|. + +..++++++|++|.+.
T Consensus 485 -~~~~~~~i~~-~~~ls~~~~~~~~~~~~~~~~~D~~~~~~~e~kn~lEs~iy~~r~~l~--~-~~~~~~~~e~~~l~~~ 559 (595)
T TIGR02350 485 -GKEQSITITA-SSGLSEEEIERMVKEAEANAEEDKKRKEEIEARNNADSLAYQAEKTLK--E-AGDKLPAEEKEKIEKA 559 (595)
T ss_pred -CceEEEEecc-ccccCHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHH--H-hhccCCHHHHHHHHHH
Confidence 1122334433 357999999999999999999999999999999999999999999996 3 6889999999999999
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy740 581 LDETENWLYEEGADVNKSVYISKLDELKAIGEKIRQR 617 (763)
Q Consensus 581 l~e~~~WL~~~g~~a~~~~~~~kl~eL~~~~~pi~~R 617 (763)
|+++++|||++ +..+|++++++|+++++++..+
T Consensus 560 l~~~~~wL~~~----d~~~i~~~~~~l~~~~~~~~~~ 592 (595)
T TIGR02350 560 VAELKEALKGE----DVEEIKAKTEELQQALQKLAEA 592 (595)
T ss_pred HHHHHHHHhcC----CHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999964 6789999999999999999864
No 13
>KOG0101|consensus
Probab=100.00 E-value=2e-86 Score=729.55 Aligned_cols=548 Identities=33% Similarity=0.539 Sum_probs=508.8
Q ss_pred CCcceEEEEcCccceEEEEEECCceeEEcCCCCCccccEEEEeeCCceEEcHHHHHhHhhccCchHHHhhhhhCCCCCCh
Q psy740 2 AGMSVIGIDFGNESCFIAAARAGGIETIANDYSLRATPSCVAFSDRNRILGVAAKNQTVTNMKNTIHGFKRLIGREFKDP 81 (763)
Q Consensus 2 ~~~~viGID~GTt~s~va~~~~g~~~iv~n~~~~r~~PS~V~~~~~~~~~G~~A~~~~~~~p~~~~~~~KrllG~~~~d~ 81 (763)
..+.+||||||||+|||++|.+|.++++.|++|.|.|||+|+|.+.++++|.+|..+...+|.|+++++||+||+.++|+
T Consensus 5 ~~~~aiGIdlGtT~s~v~v~~~~~v~iian~~g~rttPs~vaf~~~e~~vg~~a~~qv~~np~ntv~~~krliGr~f~d~ 84 (620)
T KOG0101|consen 5 PESVAIGIDLGTTYSCVGVYQSGKVEIIANDQGNRTTPSVVAFTDTERLIGDAAKNQVARNPDNTVFDAKRLIGRFFDDP 84 (620)
T ss_pred cccceeeEeccCccceeeeEcCCcceeeeccccCccccceeeecccccchhhhhhhhhhcCCcceeeehhhhcCccccch
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhcCCceeeeCCCCCeEEEEEecCCceeeCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEeecccCCHHHHHHHHH
Q psy740 82 HVQDELKFLPYNVSENPDGSIGIKVKYLNEDRVFTPEQITAMLLTKLRETSEIALQCNISDCVLSVPSFYTNAERKALLD 161 (763)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~peev~a~~L~~lk~~ae~~~~~~v~~~VITVPa~f~~~qR~al~~ 161 (763)
.++.++++|||.+....++.+.+.+.+.++...|+|+++.+++|.+++..|+.++|..+.++|||||+||++.||+|+.+
T Consensus 85 ~v~~~~k~~pf~V~~~~~~~~~i~~~~~~~~~~f~peeiss~~L~klke~Ae~~Lg~~v~~aviTVPa~F~~~Qr~at~~ 164 (620)
T KOG0101|consen 85 EVQSDMKLWPFKVISDQGGKPKIQVTYKGETKSFNPEEISSMVLTKLKETAEAYLGKTVKKAVVTVPAYFNDSQRAATKD 164 (620)
T ss_pred hhHhHhhcCCcccccccCCcceEEecccccceeeeeeeeeehhccccHHHHHHHhcCceeeEEEEecCCcCHHHHHHHHH
Confidence 99999999999999777788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHh-------------------------------------------------------HhhhcCCCCCchhHHHHHHHHH
Q psy740 162 AAK-------------------------------------------------------IIASAANPYLGGRNIDYKLAKH 186 (763)
Q Consensus 162 Aa~-------------------------------------------------------vl~~~~d~~lGG~d~D~~l~~~ 186 (763)
|+. |+++.||.+|||.+||+.|++|
T Consensus 165 A~~iaGl~vlrii~EPtAaalAygl~k~~~~~~~VlI~DlGggtfdvs~l~i~gG~~~vkat~gd~~lGGedf~~~l~~h 244 (620)
T KOG0101|consen 165 AALIAGLNVLRIINEPTAAALAYGLDKKVLGERNVLIFDLGGGTFDVSVLSLEGGIFEVKATAGDTHLGGEDFDNKLVNH 244 (620)
T ss_pred HHHhcCCceeeeecchHHHHHHhhccccccceeeEEEEEcCCCceeeeeEEeccchhhhhhhcccccccchhhhHHHHHH
Confidence 998 8899999999999999999999
Q ss_pred HHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHhccCCCceeeEEeeccccCcccEEEeeHHHHHHHhHHHHHHHHHHHHH
Q psy740 187 FSQEFKQKYNIEPESNPRAFLRLLTEVEKLKKQMSANSTKLPFGIECFMNDIDVKGEMCRSEMEELCKDVFENVEKTLKD 266 (763)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~~~~~~ie~l~~~~d~~~~itr~~fe~l~~~l~~~i~~~i~~ 266 (763)
|+.+|+++++.++..|+++++||+.+||++|+.||+. ..+++.|++|+++.|+..+|||.+||.+|.+++.++..++..
T Consensus 245 ~~~ef~~k~~~d~~~n~r~l~rLR~a~E~aKr~LS~~-~~~~i~vdsL~~g~d~~~~itrarfe~l~~dlf~~~~~~v~~ 323 (620)
T KOG0101|consen 245 FAAEFKRKAGKDIGGNARALRRLRTACERAKRTLSSS-TQASIEIDSLYEGIDFYTSITRARFEELNADLFRSTLEPVEK 323 (620)
T ss_pred HHHHHHHhhccccccchHHHHHHHHHHHHHHhhhccc-ccceeccchhhccccccceeehhhhhhhhhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999764 468899999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCCccEEEEecCCCCcHHHHHHHHHhc-CCCCCCCCChhHHHHhHHHHHcchhcCC--ccccccEEEEeccc
Q psy740 267 CLEKSKLALSDIHSVEIVGGSSRIPAIKGLIEKIF-QKTPSTTLNQDEAVARGCALQCAMLSPA--VRVRDFSVTDLQVY 343 (763)
Q Consensus 267 ~l~~a~~~~~~i~~V~lvGGssriP~v~~~l~~~f-g~~~~~~~n~deaVa~GAa~~aa~ls~~--~~~~~~~~~d~~~~ 343 (763)
+|+++++.+.+|+.|+|||||||+|.+|..|+++| |+.+..++||||+||+|||+|||.+++. -.+.++.+.|+.|.
T Consensus 324 ~L~da~~dk~~i~~vvlVGGstriPk~~~ll~d~f~~k~~~~sinpDeavA~GAavqaa~~~g~~~~~~~~l~lid~~pl 403 (620)
T KOG0101|consen 324 ALKDAKLDKSDIDEVVLVGGSTRIPKVQKLLEDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSLNIQDLLLIDVAPL 403 (620)
T ss_pred HHHhhccCccCCceeEEecCcccchHHHHHHHHHhcccccccCCCHHHHHHhhHHHHhhhccCCccccccceeeeecccc
Confidence 99999999999999999999999999999999999 5778999999999999999999999984 23478999999999
Q ss_pred ceEEEecCCCCCCCCCCceEEEecCCCCcCceEEEEeeeCC----CEEEEEEEecC-cCCCCcccceEEeeccCCCCCCC
Q psy740 344 PVVMEWDPSPNEPKDSKNFITVFPEMHAAPFSKKMTFYQNK----PFAIQLYYEGN-VPYPSKFIGKYQINDVKPGPDNA 418 (763)
Q Consensus 344 ~i~i~~~~~~~~~~~~~~~~~l~~~~~~iP~~k~~~f~~~~----~~~i~i~~~~~-~~~~~~~ig~~~i~~i~~~~~g~ 418 (763)
++||+.... .+.++|++|+.+|++++.+|++.. .+.|.+|+|+. +..+|..+|.|.+.||+|+|+|.
T Consensus 404 ~~gve~a~~--------~~~~~i~~~t~~P~~k~~~ftt~~dnQp~V~I~VyEger~~~kdn~~lg~feL~gippaprgv 475 (620)
T KOG0101|consen 404 SLGVETAGG--------VFTVLIPRNTSIPTKKTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGV 475 (620)
T ss_pred cccccccCC--------cceeeeecccccceeeeeeeeeecCCCCceeEEEEeccccccccccccceeeecCCCccccCC
Confidence 999998761 344899999999999999996643 47899999987 88999999999999999999999
Q ss_pred cceEEEEEEEcCCccEEEEEeeeeEeeccCCCCCCCcccccccccccccccCCccccccccccccCCcchhHhHHHhhhc
Q psy740 419 SQKVTVKVRVNMDGVIGVIAASMVEKVENSGDTESMDVENTEEENGQKQEAGSENTENKAEKTQEGQSEDAEKKAAEAKK 498 (763)
Q Consensus 419 ~~~i~v~~~vd~~Gil~v~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (763)
+. |.++|.+|.||+|.|++.++ .
T Consensus 476 p~-IevtfdiD~ngiL~Vta~d~---s----------------------------------------------------- 498 (620)
T KOG0101|consen 476 PQ-IEVTFDIDANGILNVTAVDK---S----------------------------------------------------- 498 (620)
T ss_pred cc-eeEEEecCCCcEEEEeeccc---c-----------------------------------------------------
Confidence 85 99999999999999998521 1
Q ss_pred cccceeeeeeEeecCCCCCHHHHHHHHHHHHhhhhchHHHHHHHHHhhhhHHHHHHHHHHccchHHhhccCCHHHHHHHH
Q psy740 499 KVVSKTLDLTISATTHGLSPEQLNAHTELEGKMIADDKLEKERIDARNCLEEYVYDLRNKLGSEEEFALYIAADDASKLS 578 (763)
Q Consensus 499 K~~~k~~~~~i~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~ea~N~LEs~iy~~R~~L~~~~~~~~~~teeer~~l~ 578 (763)
..+...+.|++....||.++|++|....++...+|...+.+..++|.||+|+|.++..+++ +. ..+.++++.++.
T Consensus 499 --tgK~~~i~i~n~~grls~~~Ierm~~ea~~~~~~d~~~~~~v~~~~~le~~~f~~~~~~~~-~~--~~i~~~~~~~~~ 573 (620)
T KOG0101|consen 499 --TGKENKITITNDKGRLSKEEIERMVQEAEKYKAEDEKQKDKVAAKNSLESYAFNMKATVED-EK--GKINEEDKQKIL 573 (620)
T ss_pred --CCccceEEEecccceeehhhhhhhhhhhhhccccCHHHHHHHHHHhhHHHHHHhhhhhhhh-hc--cccChhhhhhHH
Confidence 1344456677777899999999999999999999999999999999999999999999984 22 789999999999
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy740 579 TQLDETENWLYEEGADVNKSVYISKLDELKAIGEKIRQRKVDY 621 (763)
Q Consensus 579 ~~l~e~~~WL~~~g~~a~~~~~~~kl~eL~~~~~pi~~R~~E~ 621 (763)
.+|.++..||.-+ ..+.+++|..|..+|+..+.||..+....
T Consensus 574 ~~~~~~i~wl~~~-~~~~~~e~e~k~~el~~~~~p~~~~~~~~ 615 (620)
T KOG0101|consen 574 DKCNEVINWLDKN-QLAEKEEFEHKQKELELVCNPIISKLYQG 615 (620)
T ss_pred HHHHHHHHHhhhc-ccccccHHHHHHHHHHhhccHHHHhhhcc
Confidence 9999999999977 45569999999999999999999886543
No 14
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=100.00 E-value=5.2e-82 Score=728.83 Aligned_cols=522 Identities=21% Similarity=0.384 Sum_probs=468.9
Q ss_pred eEEEEcCccceEEEEEECCceeEEcCCCCCccccEEEEeeCC-ceEEcHHHHHhHhhccCchHHHhhhhhCCCCCChHHH
Q psy740 6 VIGIDFGNESCFIAAARAGGIETIANDYSLRATPSCVAFSDR-NRILGVAAKNQTVTNMKNTIHGFKRLIGREFKDPHVQ 84 (763)
Q Consensus 6 viGID~GTt~s~va~~~~g~~~iv~n~~~~r~~PS~V~~~~~-~~~~G~~A~~~~~~~p~~~~~~~KrllG~~~~d~~~~ 84 (763)
+||||||||||+||++++|+++++.|..|.|.+||+|+|.++ .++||..|+.++.++|.++++++|||||+.+.+..
T Consensus 1 ~iGIDlGTtns~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~Kr~iG~~~~d~~-- 78 (599)
T TIGR01991 1 AVGIDLGTTNSLVASVRSGVPEVLPDAEGRVLLPSVVRYLKDGGVEVGKEALAAAAEDPKNTISSVKRLMGRSIEDIK-- 78 (599)
T ss_pred CEEEEEccccEEEEEEECCEEEEEECCCCCcccCeEEEEeCCCCEEecHHHHHhhhhChhhhHHHHHHHhCCCccchh--
Confidence 589999999999999999999999999999999999999866 89999999999999999999999999999987743
Q ss_pred hhhhcCCceeeeCCCCCeEEEEEecCCceeeCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEeecccCCHHHHHHHHHHHh
Q psy740 85 DELKFLPYNVSENPDGSIGIKVKYLNEDRVFTPEQITAMLLTKLRETSEIALQCNISDCVLSVPSFYTNAERKALLDAAK 164 (763)
Q Consensus 85 ~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~peev~a~~L~~lk~~ae~~~~~~v~~~VITVPa~f~~~qR~al~~Aa~ 164 (763)
. .+.+||.++..++|.+.+.+.. ..++|++|++++|++|++.|+.++|.++.++|||||+||++.||+++++||+
T Consensus 79 ~-~~~~~~~~~~~~~~~~~~~~~~----~~~~p~ei~a~iL~~lk~~a~~~lg~~v~~~VItVPa~f~~~qR~a~~~Aa~ 153 (599)
T TIGR01991 79 T-FSILPYRFVDGPGEMVRLRTVQ----GTVTPVEVSAEILKKLKQRAEESLGGDLVGAVITVPAYFDDAQRQATKDAAR 153 (599)
T ss_pred h-cccCCEEEEEcCCCceEEEeCC----CEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHH
Confidence 2 6778999998888888887752 3799999999999999999999999999999999999999999999999999
Q ss_pred -----------------------------------------------------HhhhcCCCCCchhHHHHHHHHHHHHHH
Q psy740 165 -----------------------------------------------------IIASAANPYLGGRNIDYKLAKHFSQEF 191 (763)
Q Consensus 165 -----------------------------------------------------vl~~~~d~~lGG~d~D~~l~~~~~~~~ 191 (763)
|++++||.+|||+|||+.|++||.+++
T Consensus 154 ~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGgGT~DvSi~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~l~~~~ 233 (599)
T TIGR01991 154 LAGLNVLRLLNEPTAAAVAYGLDKASEGIYAVYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHALAKWILKQL 233 (599)
T ss_pred HcCCCceEEecCHHHHHHHHhhccCCCCEEEEEEcCCCeEEEEEEEEcCCeEEEEEEcCCCCCCHHHHHHHHHHHHHHhh
Confidence 788899999999999999999999764
Q ss_pred HhhcCCCCCCCHHHHHHHHHHHHHHHHhccCCCceeeEEeeccccCcccEEEeeHHHHHHHhHHHHHHHHHHHHHHHHHc
Q psy740 192 KQKYNIEPESNPRAFLRLLTEVEKLKKQMSANSTKLPFGIECFMNDIDVKGEMCRSEMEELCKDVFENVEKTLKDCLEKS 271 (763)
Q Consensus 192 ~~~~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~~~~~~ie~l~~~~d~~~~itr~~fe~l~~~l~~~i~~~i~~~l~~a 271 (763)
++++..+++++.+|+.+||++|+.||.+. .+.+.++. ++.++.++|||++|+++|+|+++++..+|+++|+++
T Consensus 234 ----~~~~~~~~~~~~~L~~~ae~aK~~LS~~~-~~~i~i~~--~g~~~~~~itr~efe~l~~~ll~~i~~~i~~~L~~a 306 (599)
T TIGR01991 234 ----GISADLNPEDQRLLLQAARAAKEALTDAE-SVEVDFTL--DGKDFKGKLTRDEFEALIQPLVQKTLSICRRALRDA 306 (599)
T ss_pred ----CCCCCCCHHHHHHHHHHHHHHHHhCCCCc-eEEEEEEE--CCcEEEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45666789999999999999999999876 46677764 788999999999999999999999999999999999
Q ss_pred CCCCCCccEEEEecCCCCcHHHHHHHHHhcCCCCCCCCChhHHHHhHHHHHcchhcCCccccccEEEEecccceEEEecC
Q psy740 272 KLALSDIHSVEIVGGSSRIPAIKGLIEKIFQKTPSTTLNQDEAVARGCALQCAMLSPAVRVRDFSVTDLQVYPVVMEWDP 351 (763)
Q Consensus 272 ~~~~~~i~~V~lvGGssriP~v~~~l~~~fg~~~~~~~n~deaVa~GAa~~aa~ls~~~~~~~~~~~d~~~~~i~i~~~~ 351 (763)
++.+.+|+.|+||||+||||+|+++|+++||..+..++|||+|||+|||++|+++++.++.+++.+.|++||+||+++.+
T Consensus 307 ~~~~~~id~ViLvGGssriP~V~~~l~~~f~~~~~~~~npdeaVA~GAai~a~~l~~~~~~~~~~l~dv~p~slgi~~~~ 386 (599)
T TIGR01991 307 GLSVEEIKGVVLVGGSTRMPLVRRAVAELFGQEPLTDIDPDQVVALGAAIQADLLAGNRIGNDLLLLDVTPLSLGIETMG 386 (599)
T ss_pred CCChhhCCEEEEECCcCCChHHHHHHHHHhCCCCCCCCCCcHHHHHHHHHHHHHhccccccCceEEEEeeeeeeEEEecC
Confidence 99999999999999999999999999999998888899999999999999999999998888999999999999999875
Q ss_pred CCCCCCCCCceEEEecCCCCcCceEEEEeeeC--C--CEEEEEEEecC-cCCCCcccceEEeeccCCCCCCCcceEEEEE
Q psy740 352 SPNEPKDSKNFITVFPEMHAAPFSKKMTFYQN--K--PFAIQLYYEGN-VPYPSKFIGKYQINDVKPGPDNASQKVTVKV 426 (763)
Q Consensus 352 ~~~~~~~~~~~~~l~~~~~~iP~~k~~~f~~~--~--~~~i~i~~~~~-~~~~~~~ig~~~i~~i~~~~~g~~~~i~v~~ 426 (763)
+ .+.+|||+|+++|++++..|++. . .+.|.+|+|+. ++.+|..||+|.|.|+++.+.|.+ +|.|+|
T Consensus 387 ----g----~~~~ii~rnt~iP~~~~~~~~t~~d~q~~v~i~i~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~-~i~v~f 457 (599)
T TIGR01991 387 ----G----LVEKIIPRNTPIPVARAQEFTTYKDGQTAMVIHVVQGERELVEDCRSLARFELRGIPPMVAGAA-RIRVTF 457 (599)
T ss_pred ----C----EEEEEEeCCCcCCccceEEEEEccCCCeEEEEEEEeecccccccCceEEEEEEcCCCCCCCCCC-cEEEEE
Confidence 1 34589999999999999888653 2 37888999987 788899999999999999998876 599999
Q ss_pred EEcCCccEEEEEeeeeEeeccCCCCCCCcccccccccccccccCCccccccccccccCCcchhHhHHHhhhccccceeee
Q psy740 427 RVNMDGVIGVIAASMVEKVENSGDTESMDVENTEEENGQKQEAGSENTENKAEKTQEGQSEDAEKKAAEAKKKVVSKTLD 506 (763)
Q Consensus 427 ~vd~~Gil~v~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~K~~~k~~~ 506 (763)
++|.||+|+|++.+ ... .+...
T Consensus 458 ~id~~gil~V~a~~---~~t-------------------------------------------------------~~~~~ 479 (599)
T TIGR01991 458 QVDADGLLTVSAQE---QST-------------------------------------------------------GVEQS 479 (599)
T ss_pred EECCCCeEEEEEEE---CCC-------------------------------------------------------CcEEE
Confidence 99999999999842 110 11122
Q ss_pred eeEeecCCCCCHHHHHHHHHHHHhhhhchHHHHHHHHHhhhhHHHHHHHHHHccchHHhhccCCHHHHHHHHHHHHHHHH
Q psy740 507 LTISATTHGLSPEQLNAHTELEGKMIADDKLEKERIDARNCLEEYVYDLRNKLGSEEEFALYIAADDASKLSTQLDETEN 586 (763)
Q Consensus 507 ~~i~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~ea~N~LEs~iy~~R~~L~~~~~~~~~~teeer~~l~~~l~e~~~ 586 (763)
+.+.. ..+|+.++++++.+.+.++..+|...+++.+++|.+|+|+|.++..+. .+..++++++|+.+...|++.++
T Consensus 480 ~~i~~-~~~l~~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~ 555 (599)
T TIGR01991 480 IQVKP-SYGLSDEEIERMLKDSFKHAEEDMYARALAEQKVEAERILEALQAALA---ADGDLLSEDERAAIDAAMEALQK 555 (599)
T ss_pred Eeccc-ccCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH---HhhccCCHHHHHHHHHHHHHHHH
Confidence 33433 457999999999999999999999999999999999999999999885 35678999999999999999999
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy740 587 WLYEEGADVNKSVYISKLDELKAIGEKIRQ 616 (763)
Q Consensus 587 WL~~~g~~a~~~~~~~kl~eL~~~~~pi~~ 616 (763)
||+++ +...+++++++|+....++..
T Consensus 556 ~l~~~----~~~~~~~~~~~l~~~~~~~~~ 581 (599)
T TIGR01991 556 ALQGD----DADAIKAAIEALEEATDNFAA 581 (599)
T ss_pred HHhcC----CHHHHHHHHHHHHHHHHHHHH
Confidence 99965 568999999999999988875
No 15
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=100.00 E-value=3.3e-82 Score=742.36 Aligned_cols=540 Identities=37% Similarity=0.625 Sum_probs=483.8
Q ss_pred eEEEEcCccceEEEEEECCceeEEcCCCCCccccEEEEeeCCceEEcHHHHHhHhhccCchHHHhhhhhCCCCCChHHHh
Q psy740 6 VIGIDFGNESCFIAAARAGGIETIANDYSLRATPSCVAFSDRNRILGVAAKNQTVTNMKNTIHGFKRLIGREFKDPHVQD 85 (763)
Q Consensus 6 viGID~GTt~s~va~~~~g~~~iv~n~~~~r~~PS~V~~~~~~~~~G~~A~~~~~~~p~~~~~~~KrllG~~~~d~~~~~ 85 (763)
||||||||+||+||++.+|.+++|.|..|+|++||+|+|.+++++||..|..++.++|+++++++|||||+.++++.++.
T Consensus 1 viGID~Gt~~~~va~~~~~~~~ii~~~~~~~~~ps~v~~~~~~~~~G~~a~~~~~~~~~~~~~~~k~liG~~~~~~~~~~ 80 (602)
T PF00012_consen 1 VIGIDLGTTNSKVAVFKNGKPEIILNEEGKRKTPSVVSFSDNERLVGEDAKSQMIRNPKNTIYNLKRLIGRKFDDPDVQK 80 (602)
T ss_dssp EEEEEE-SSEEEEEEEETTEEEEE--TTS-SSEESEEEEESSCEEETHHHHHTTTTSGGGEEESGGGTTTSBTTSHHHHH
T ss_pred CEEEEeccCCEEEEEEEeccccccccccccccccceeeEeeecccCCcchhhhcccccccccccccccccccccccccch
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCceeeeCCCCCeEEEEEecCCceeeCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEeecccCCHHHHHHHHHHHh-
Q psy740 86 ELKFLPYNVSENPDGSIGIKVKYLNEDRVFTPEQITAMLLTKLRETSEIALQCNISDCVLSVPSFYTNAERKALLDAAK- 164 (763)
Q Consensus 86 ~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~peev~a~~L~~lk~~ae~~~~~~v~~~VITVPa~f~~~qR~al~~Aa~- 164 (763)
+.+.+||.++..++|.+.+.+.+.+....++|++|++++|++|++.|+.+++..+.+||||||++|++.||+++++||+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~~~~Aa~~ 160 (602)
T PF00012_consen 81 EKKKFPYKVVEDPDGKVYFEVDYDGKSKTYSPEELSAMILKYLKEMAEKYLGEKVTDVVITVPAYFTDEQRQALRDAAEL 160 (602)
T ss_dssp HHTTSSSEEEEETTTEEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHTSBEEEEEEEE-TT--HHHHHHHHHHHHH
T ss_pred hhhcccccccccccccccccccccccceeeeeecccccchhhhcccchhhcccccccceeeechhhhhhhhhcccccccc
Confidence 9999999999999999999999888778999999999999999999999999999999999999999999999999999
Q ss_pred -----------------------------------------------------HhhhcCCCCCchhHHHHHHHHHHHHHH
Q psy740 165 -----------------------------------------------------IIASAANPYLGGRNIDYKLAKHFSQEF 191 (763)
Q Consensus 165 -----------------------------------------------------vl~~~~d~~lGG~d~D~~l~~~~~~~~ 191 (763)
|+++.|+.+|||++||.+|++|+.++|
T Consensus 161 agl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~Gggt~dvs~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~~~~~~ 240 (602)
T PF00012_consen 161 AGLNVLRLINEPTAAALAYGLERSDKGKTVLVVDFGGGTFDVSVVEFSNGQFEVLATAGDNNLGGRDFDEALAEYLLEKF 240 (602)
T ss_dssp TT-EEEEEEEHHHHHHHHTTTTSSSSEEEEEEEEEESSEEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHHHHH
T ss_pred cccccceeecccccccccccccccccccceeccccccceEeeeehhcccccccccccccccccccceecceeeccccccc
Confidence 788899999999999999999999999
Q ss_pred HhhcCCCCCCCHHHHHHHHHHHHHHHHhccCC-CceeeEEeecccc-CcccEEEeeHHHHHHHhHHHHHHHHHHHHHHHH
Q psy740 192 KQKYNIEPESNPRAFLRLLTEVEKLKKQMSAN-STKLPFGIECFMN-DIDVKGEMCRSEMEELCKDVFENVEKTLKDCLE 269 (763)
Q Consensus 192 ~~~~~~~~~~~~~~~~rL~~~aek~K~~LS~~-~~~~~~~ie~l~~-~~d~~~~itr~~fe~l~~~l~~~i~~~i~~~l~ 269 (763)
..+++.++..+++++.+|+.+||++|+.||.. ...+.+.++++++ |.++++.|||++|+++|.|+++++..+|+++|+
T Consensus 241 ~~~~~~d~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~~~~~~~~~~~~~~~~~itr~~fe~l~~~~~~~~~~~i~~~l~ 320 (602)
T PF00012_consen 241 KKKYKIDLRENPRAMARLLEAAEKAKEQLSSNDNTEITISIESLYDDGEDFSITITREEFEELCEPLLERIIEPIEKALK 320 (602)
T ss_dssp HHHHSS-GTCSHHHHHHHHHHHHHHHHHTTTSSSSEEEEEEEEEETTTEEEEEEEEHHHHHHHTHHHHHHTHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccceecccccccccccccccccccc
Confidence 99999999999999999999999999999993 3367888999888 899999999999999999999999999999999
Q ss_pred HcCCCCCCccEEEEecCCCCcHHHHHHHHHhcCCCCCCCCChhHHHHhHHHHHcchhcCCccccccEEEEecccceEEEe
Q psy740 270 KSKLALSDIHSVEIVGGSSRIPAIKGLIEKIFQKTPSTTLNQDEAVARGCALQCAMLSPAVRVRDFSVTDLQVYPVVMEW 349 (763)
Q Consensus 270 ~a~~~~~~i~~V~lvGGssriP~v~~~l~~~fg~~~~~~~n~deaVa~GAa~~aa~ls~~~~~~~~~~~d~~~~~i~i~~ 349 (763)
.++++..+|+.|+||||+||+|+|+++|++.||..+..++||++|||+|||++|+.+++.++++++.+.|++|++|||.+
T Consensus 321 ~~~~~~~~i~~V~lvGG~sr~p~v~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~~~~~~~~~~~~~~d~~~~~~~i~~ 400 (602)
T PF00012_consen 321 DAGLKKEDIDSVLLVGGSSRIPYVQEALKELFGKKISKSVNPDEAVARGAALYAAILSGSFRVKDIKIIDVTPFSIGIEV 400 (602)
T ss_dssp HTT--GGGESEEEEESGGGGSHHHHHHHHHHTTSEEB-SS-TTTHHHHHHHHHHHHHHTSCSSTSSCESEBESSEEEEEE
T ss_pred cccccccccceeEEecCcccchhhhhhhhhccccccccccccccccccccccchhhhccccccccccccccccccccccc
Confidence 99999999999999999999999999999999988889999999999999999999999999999999999999999998
Q ss_pred cCCCCCCCCCCceEEEecCCCCcCceEEEEeeeC----CCEEEEEEEecC-cCCCCcccceEEeeccCCCCCCCcceEEE
Q psy740 350 DPSPNEPKDSKNFITVFPEMHAAPFSKKMTFYQN----KPFAIQLYYEGN-VPYPSKFIGKYQINDVKPGPDNASQKVTV 424 (763)
Q Consensus 350 ~~~~~~~~~~~~~~~l~~~~~~iP~~k~~~f~~~----~~~~i~i~~~~~-~~~~~~~ig~~~i~~i~~~~~g~~~~i~v 424 (763)
.+. ....++++|+++|+.+...|.+. ..|.|.+|||+. ...++..||+|.|.++++.+.|.+ +|+|
T Consensus 401 ~~~--------~~~~ii~~~t~iP~~~~~~~~t~~~~~~~i~i~i~~g~~~~~~~~~~ig~~~i~~i~~~~~g~~-~i~v 471 (602)
T PF00012_consen 401 SNG--------KFSKIIPKNTPIPSKKSKSFKTVTDNQTSISIDIYEGESSSFEDNKKIGSYTISGIPPAPKGKP-KIKV 471 (602)
T ss_dssp TTT--------EEEEEESTTEBSSEEEEEEEEESSTTCSEEEEEEEESSSSBGGGSEEEEEEEEES-SSSSTTSS-EEEE
T ss_pred ccc--------ccccccccccccccccccccchhccccccccceeeecccccccccccccccccccccccccccc-ceee
Confidence 761 45589999999999988777542 358999999987 566779999999999998888865 6999
Q ss_pred EEEEcCCccEEEEEeeeeEeeccCCCCCCCcccccccccccccccCCccccccccccccCCcchhHhHHHhhhcccccee
Q psy740 425 KVRVNMDGVIGVIAASMVEKVENSGDTESMDVENTEEENGQKQEAGSENTENKAEKTQEGQSEDAEKKAAEAKKKVVSKT 504 (763)
Q Consensus 425 ~~~vd~~Gil~v~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~K~~~k~ 504 (763)
+|++|.||+|+|+++.+.. ...
T Consensus 472 ~f~ld~~Gil~V~~~~~~~----------------------------------------------------------~~~ 493 (602)
T PF00012_consen 472 TFELDENGILSVEAAEVET----------------------------------------------------------GKE 493 (602)
T ss_dssp EEEEETTSEEEEEEEETTT----------------------------------------------------------TEE
T ss_pred EEeeeeeeehhhhhccccc----------------------------------------------------------ccc
Confidence 9999999999999864311 011
Q ss_pred eeeeEeecCCCCCHHHHHHHHHHHHhhhhchHHHHHHHHHhhhhHHHHHHHHHHccchHHhhccCCHHHHHHHHHHHHHH
Q psy740 505 LDLTISATTHGLSPEQLNAHTELEGKMIADDKLEKERIDARNCLEEYVYDLRNKLGSEEEFALYIAADDASKLSTQLDET 584 (763)
Q Consensus 505 ~~~~i~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~ea~N~LEs~iy~~R~~L~~~~~~~~~~teeer~~l~~~l~e~ 584 (763)
..+.+.... .++.++++.+..++.++...|+.++++.+++|.||+|+|++|++|++ . ..+++++++ .+.|+++
T Consensus 494 ~~~~v~~~~-~~~~~~~~~~~~~~~~~~~~d~~~~~~~e~kn~lE~~i~~~r~~l~~--~-~~~~~~~~~---~~~l~~~ 566 (602)
T PF00012_consen 494 EEVTVKKKE-TLSKEEIEELKKKLEEMDEEDEERRERAEAKNELESYIYELRDKLEE--D-KDFVSEEEK---KKKLKET 566 (602)
T ss_dssp EEEEEESSS-SSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--C-GGGSTHHHH---HHHHHHH
T ss_pred ccccccccc-ccccccccccccccchhhhhhhhhhhccccHHHHHHHHHHHHHHHHh--h-hccCCHHHH---HHHHHHH
Confidence 123333333 48999999999999999999999999999999999999999999985 2 667777777 8999999
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy740 585 ENWLYEEGADVNKSVYISKLDELKAIGEKIRQRKV 619 (763)
Q Consensus 585 ~~WL~~~g~~a~~~~~~~kl~eL~~~~~pi~~R~~ 619 (763)
.+||++++.+++.++|++|+++|+++.+||..|++
T Consensus 567 ~~wl~~~~~~~~~~e~~~kl~~L~~~~~~i~~r~~ 601 (602)
T PF00012_consen 567 SDWLEDNGEDADKEEYKEKLEELKKVIEPIKKRYM 601 (602)
T ss_dssp HHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999998899999999999999999999999985
No 16
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=1.4e-80 Score=718.17 Aligned_cols=521 Identities=21% Similarity=0.370 Sum_probs=464.9
Q ss_pred ceEEEEcCccceEEEEEECCceeEEcCCCCCccccEEEEeeCCceEEcHHHHHhHhhccCchHHHhhhhhCCCCCChHHH
Q psy740 5 SVIGIDFGNESCFIAAARAGGIETIANDYSLRATPSCVAFSDRNRILGVAAKNQTVTNMKNTIHGFKRLIGREFKDPHVQ 84 (763)
Q Consensus 5 ~viGID~GTt~s~va~~~~g~~~iv~n~~~~r~~PS~V~~~~~~~~~G~~A~~~~~~~p~~~~~~~KrllG~~~~d~~~~ 84 (763)
.+||||||||||+||++.+|.+++|.|..|+|.+||+|+|.+++++||..|+.++.++|.++++++|||||+.+.+ ++
T Consensus 20 ~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d--~~ 97 (616)
T PRK05183 20 LAVGIDLGTTNSLVATVRSGQAEVLPDEQGRVLLPSVVRYLEDGIEVGYEARANAAQDPKNTISSVKRFMGRSLAD--IQ 97 (616)
T ss_pred eEEEEEeccccEEEEEEECCEEEEEEcCCCCeecCeEEEEcCCCEEEcHHHHHhhHhCchhhHHHHHHHhCCCchh--hh
Confidence 5899999999999999999999999999999999999999988899999999999999999999999999999876 34
Q ss_pred hhhhcCCceeeeCCCCCeEEEEEecCCceeeCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEeecccCCHHHHHHHHHHHh
Q psy740 85 DELKFLPYNVSENPDGSIGIKVKYLNEDRVFTPEQITAMLLTKLRETSEIALQCNISDCVLSVPSFYTNAERKALLDAAK 164 (763)
Q Consensus 85 ~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~peev~a~~L~~lk~~ae~~~~~~v~~~VITVPa~f~~~qR~al~~Aa~ 164 (763)
.....+||.++..++|.+.+.+. ...++|++|++++|++|++.|+.++|..+.++|||||+||++.||+++++||+
T Consensus 98 ~~~~~~~~~~~~~~~g~~~~~~~----~~~~~p~ei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~ 173 (616)
T PRK05183 98 QRYPHLPYQFVASENGMPLIRTA----QGLKSPVEVSAEILKALRQRAEETLGGELDGAVITVPAYFDDAQRQATKDAAR 173 (616)
T ss_pred hhhhcCCeEEEecCCCceEEEec----CCeEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHH
Confidence 55678899998888888887764 23799999999999999999999999999999999999999999999999999
Q ss_pred -----------------------------------------------------HhhhcCCCCCchhHHHHHHHHHHHHHH
Q psy740 165 -----------------------------------------------------IIASAANPYLGGRNIDYKLAKHFSQEF 191 (763)
Q Consensus 165 -----------------------------------------------------vl~~~~d~~lGG~d~D~~l~~~~~~~~ 191 (763)
|++++||.+|||+|||..|++||.++|
T Consensus 174 ~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSv~~~~~~~~evlat~gd~~lGG~d~D~~l~~~~~~~~ 253 (616)
T PRK05183 174 LAGLNVLRLLNEPTAAAIAYGLDSGQEGVIAVYDLGGGTFDISILRLSKGVFEVLATGGDSALGGDDFDHLLADWILEQA 253 (616)
T ss_pred HcCCCeEEEecchHHHHHHhhcccCCCCEEEEEECCCCeEEEEEEEeeCCEEEEEEecCCCCcCHHHHHHHHHHHHHHHc
Confidence 788999999999999999999999876
Q ss_pred HhhcCCCCCCCHHHHHHHHHHHHHHHHhccCCCceeeEEeeccccCcccEEEeeHHHHHHHhHHHHHHHHHHHHHHHHHc
Q psy740 192 KQKYNIEPESNPRAFLRLLTEVEKLKKQMSANSTKLPFGIECFMNDIDVKGEMCRSEMEELCKDVFENVEKTLKDCLEKS 271 (763)
Q Consensus 192 ~~~~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~~~~~~ie~l~~~~d~~~~itr~~fe~l~~~l~~~i~~~i~~~l~~a 271 (763)
+ .+...+++++.+|+.+||++|+.||.+. .+.+.+.. +...|||++|+++|+|+++++..+++++|+++
T Consensus 254 ~----~~~~~~~~~~~~L~~~ae~aK~~LS~~~-~~~i~i~~------~~~~itr~efe~l~~~l~~~~~~~i~~~L~~a 322 (616)
T PRK05183 254 G----LSPRLDPEDQRLLLDAARAAKEALSDAD-SVEVSVAL------WQGEITREQFNALIAPLVKRTLLACRRALRDA 322 (616)
T ss_pred C----CCcCCCHHHHHHHHHHHHHHHHhcCCCc-eEEEEEec------CCCeEcHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5 4455788999999999999999999876 46666642 23359999999999999999999999999999
Q ss_pred CCCCCCccEEEEecCCCCcHHHHHHHHHhcCCCCCCCCChhHHHHhHHHHHcchhcCCccccccEEEEecccceEEEecC
Q psy740 272 KLALSDIHSVEIVGGSSRIPAIKGLIEKIFQKTPSTTLNQDEAVARGCALQCAMLSPAVRVRDFSVTDLQVYPVVMEWDP 351 (763)
Q Consensus 272 ~~~~~~i~~V~lvGGssriP~v~~~l~~~fg~~~~~~~n~deaVa~GAa~~aa~ls~~~~~~~~~~~d~~~~~i~i~~~~ 351 (763)
++.+.+|+.|+||||+||||+|+++|+++||..+..++|||+|||+|||++|+++++.+..+++.+.|++|++||+++.+
T Consensus 323 ~~~~~~i~~ViLvGGssriP~v~~~l~~~fg~~~~~~~npdeaVA~GAAi~a~~l~~~~~~~~~~l~dv~p~slgi~~~~ 402 (616)
T PRK05183 323 GVEADEVKEVVMVGGSTRVPLVREAVGEFFGRTPLTSIDPDKVVAIGAAIQADILAGNKPDSDMLLLDVIPLSLGLETMG 402 (616)
T ss_pred CCCcccCCEEEEECCcccChHHHHHHHHHhccCcCcCCCchHHHHHHHHHHHHHhccccccCceEEEeeccccccceecC
Confidence 99999999999999999999999999999998888899999999999999999999988888999999999999999864
Q ss_pred CCCCCCCCCceEEEecCCCCcCceEEEEeeeCC----CEEEEEEEecC-cCCCCcccceEEeeccCCCCCCCcceEEEEE
Q psy740 352 SPNEPKDSKNFITVFPEMHAAPFSKKMTFYQNK----PFAIQLYYEGN-VPYPSKFIGKYQINDVKPGPDNASQKVTVKV 426 (763)
Q Consensus 352 ~~~~~~~~~~~~~l~~~~~~iP~~k~~~f~~~~----~~~i~i~~~~~-~~~~~~~ig~~~i~~i~~~~~g~~~~i~v~~ 426 (763)
+ .+.+|||+|+++|++++..|++.. .+.|.+|+|+. ++.+|..||+|.|.|+++.+.|.+ +|.|+|
T Consensus 403 ----g----~~~~ii~r~t~iP~~~~~~~~t~~d~q~~v~i~v~qGe~~~~~~n~~lg~~~i~~i~~~~~g~~-~i~v~f 473 (616)
T PRK05183 403 ----G----LVEKIIPRNTTIPVARAQEFTTFKDGQTAMAIHVVQGERELVADCRSLARFELRGIPPMAAGAA-RIRVTF 473 (616)
T ss_pred ----C----eEEEEEeCCCcccccccEEEEeccCCCeEEEEEEecccccccccccEEEEEEeCCCCCCCCCCc-cEEEEE
Confidence 1 344899999999999999886532 47888899987 788899999999999999998876 599999
Q ss_pred EEcCCccEEEEEeeeeEeeccCCCCCCCcccccccccccccccCCccccccccccccCCcchhHhHHHhhhccccceeee
Q psy740 427 RVNMDGVIGVIAASMVEKVENSGDTESMDVENTEEENGQKQEAGSENTENKAEKTQEGQSEDAEKKAAEAKKKVVSKTLD 506 (763)
Q Consensus 427 ~vd~~Gil~v~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~K~~~k~~~ 506 (763)
++|.||+|+|++.+ .. ..+...
T Consensus 474 ~~d~~Gil~V~a~~---~~-------------------------------------------------------~~~~~~ 495 (616)
T PRK05183 474 QVDADGLLSVTAME---KS-------------------------------------------------------TGVEAS 495 (616)
T ss_pred EECCCCeEEEEEEE---cC-------------------------------------------------------CCcEEE
Confidence 99999999999742 11 012223
Q ss_pred eeEeecCCCCCHHHHHHHHHHHHhhhhchHHHHHHHHHhhhhHHHHHHHHHHccchHHhhccCCHHHHHHHHHHHHHHHH
Q psy740 507 LTISATTHGLSPEQLNAHTELEGKMIADDKLEKERIDARNCLEEYVYDLRNKLGSEEEFALYIAADDASKLSTQLDETEN 586 (763)
Q Consensus 507 ~~i~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~ea~N~LEs~iy~~R~~L~~~~~~~~~~teeer~~l~~~l~e~~~ 586 (763)
+.+.. ..+|+.++++++++.+.++...|...+++.+++|++|+|+|.++.+|.+ ....+++++|+.+...+++.++
T Consensus 496 ~~i~~-~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~ 571 (616)
T PRK05183 496 IQVKP-SYGLTDDEIARMLKDSMSHAEEDMQARALAEQKVEAERVLEALQAALAA---DGDLLSAAERAAIDAAMAALRE 571 (616)
T ss_pred ecccc-cccCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH---hhccCCHHHHHHHHHHHHHHHH
Confidence 33432 3479999999999999999999999999999999999999999999962 3477899999999999999999
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy740 587 WLYEEGADVNKSVYISKLDELKAIGEKIRQR 617 (763)
Q Consensus 587 WL~~~g~~a~~~~~~~kl~eL~~~~~pi~~R 617 (763)
||..+ +.+.+++++++|++.+.++..+
T Consensus 572 ~l~~~----d~~~~~~~~~~l~~~~~~~~~~ 598 (616)
T PRK05183 572 VAQGD----DADAIEAAIKALDKATQEFAAR 598 (616)
T ss_pred HHhcC----CHHHHHHHHHHHHHHHHHHHHH
Confidence 99743 7789999999999999999863
No 17
>KOG0102|consensus
Probab=100.00 E-value=2.8e-78 Score=636.92 Aligned_cols=531 Identities=28% Similarity=0.482 Sum_probs=481.0
Q ss_pred ceEEEEcCccceEEEEEECCceeEEcCCCCCccccEEEEeeC-CceEEcHHHHHhHhhccCchHHHhhhhhCCCCCChHH
Q psy740 5 SVIGIDFGNESCFIAAARAGGIETIANDYSLRATPSCVAFSD-RNRILGVAAKNQTVTNMKNTIHGFKRLIGREFKDPHV 83 (763)
Q Consensus 5 ~viGID~GTt~s~va~~~~g~~~iv~n~~~~r~~PS~V~~~~-~~~~~G~~A~~~~~~~p~~~~~~~KrllG~~~~d~~~ 83 (763)
++||||+||||||++++.++.+.++.|.+|.|.+||+|+|.. .++++|..|+.+...||.|+++.-||+|||+|+|+.+
T Consensus 28 ~vigidlgttnS~va~meg~~~kiienaegqrtTpsvva~~kdge~Lvg~~akrqav~n~~ntffatKrligRrf~d~ev 107 (640)
T KOG0102|consen 28 KVIGIDLGTTNSCVAVMEGKKPKIIENAEGQRTTPSVVAFTKDGERLVGMPAKRQAVTNPENTFFATKRLIGRRFDDPEV 107 (640)
T ss_pred ceeeEeeeccceeEEEEeCCCceEeecccccccCCceEEEeccccEEecchhhhhhccCCCceEEEehhhhhhhccCHHH
Confidence 599999999999999999999999999999999999999964 4899999999999999999999999999999999999
Q ss_pred HhhhhcCCceeeeCCCCCeEEEEEecCCceeeCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEeecccCCHHHHHHHHHHH
Q psy740 84 QDELKFLPYNVSENPDGSIGIKVKYLNEDRVFTPEQITAMLLTKLRETSEIALQCNISDCVLSVPSFYTNAERKALLDAA 163 (763)
Q Consensus 84 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~peev~a~~L~~lk~~ae~~~~~~v~~~VITVPa~f~~~qR~al~~Aa 163 (763)
+.+++..||+++...+|...+++ .+..++|.++.+++|.+++.+|+.+++..+..+||||||||++.||+|+.+|.
T Consensus 108 q~~~k~vpyKiVk~~ngdaw~e~----~G~~~spsqig~~vl~kmk~tae~yl~~~v~~avvtvpAyfndsqRqaTkdag 183 (640)
T KOG0102|consen 108 QKDIKQVPYKIVKASNGDAWVEA----RGKQYSPSQIGAFVLMKMKETAEAYLGKKVKNAVITVPAYFNDSQRQATKDAG 183 (640)
T ss_pred HHHHHhCCcceEEccCCcEEEEe----CCeEecHHHHHHHHHHHHHHHHHHHcCchhhheeeccHHHHhHHHHHHhHhhh
Confidence 99999999999999999998887 37899999999999999999999999999999999999999999999999999
Q ss_pred h-----------------------------------------------------HhhhcCCCCCchhHHHHHHHHHHHHH
Q psy740 164 K-----------------------------------------------------IIASAANPYLGGRNIDYKLAKHFSQE 190 (763)
Q Consensus 164 ~-----------------------------------------------------vl~~~~d~~lGG~d~D~~l~~~~~~~ 190 (763)
+ |.++.||.+|||.|||..+++|+..+
T Consensus 184 ~iagl~vlrvineptaaalaygld~k~~g~iaV~dLgggtfdisilei~~gvfevksTngdtflggedfd~~~~~~~v~~ 263 (640)
T KOG0102|consen 184 QIAGLNVLRVINEPTAAALAYGLDKKEDGVIAVFDLGGGTFDISILEIEDGVFEVKSTNGDTHLGGEDFDNALVRFIVSE 263 (640)
T ss_pred hhccceeeccCCccchhHHhhcccccCCCceEEEEcCCceeeeeeehhccceeEEEeccCccccChhHHHHHHHHHHHHh
Confidence 9 88999999999999999999999999
Q ss_pred HHhhcCCCCCCCHHHHHHHHHHHHHHHHhccCCCceeeEEeeccccC----cccEEEeeHHHHHHHhHHHHHHHHHHHHH
Q psy740 191 FKQKYNIEPESNPRAFLRLLTEVEKLKKQMSANSTKLPFGIECFMND----IDVKGEMCRSEMEELCKDVFENVEKTLKD 266 (763)
Q Consensus 191 ~~~~~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~~~~~~ie~l~~~----~d~~~~itr~~fe~l~~~l~~~i~~~i~~ 266 (763)
|++..++|+..+.+++.||...+||+|..||... +..+++..+..+ ..+++.+||.+||+++.+++.|.++++++
T Consensus 264 fk~~~gidl~kd~~a~qrl~eaaEkaKielSs~~-~tei~lp~iTada~gpkh~~i~~tr~efe~~v~~lI~Rti~p~~~ 342 (640)
T KOG0102|consen 264 FKKEEGIDLTKDRMALQRLREAAEKAKIELSSRQ-QTEINLPFITADASGPKHLNIELTRGEFEELVPSLIARTIEPCKK 342 (640)
T ss_pred hhcccCcchhhhHHHHHHHHHHHHhhhhhhhhcc-cceeccceeeccCCCCeeEEEeecHHHHHHhhHHHHHhhhhHHHH
Confidence 9999999999999999999999999999999865 466777766555 67889999999999999999999999999
Q ss_pred HHHHcCCCCCCccEEEEecCCCCcHHHHHHHHHhcCCCCCCCCChhHHHHhHHHHHcchhcCCccccccEEEEecccceE
Q psy740 267 CLEKSKLALSDIHSVEIVGGSSRIPAIKGLIEKIFQKTPSTTLNQDEAVARGCALQCAMLSPAVRVRDFSVTDLQVYPVV 346 (763)
Q Consensus 267 ~l~~a~~~~~~i~~V~lvGGssriP~v~~~l~~~fg~~~~~~~n~deaVa~GAa~~aa~ls~~~~~~~~~~~d~~~~~i~ 346 (763)
+|++|++..+||+.|+||||++|+|.|++.+.++||+..+..+||||+||.|||++++.|++. ++++.+.|++|+++|
T Consensus 343 aL~dA~~~~~di~EV~lvggmtrmpkv~s~V~e~fgk~p~~~vnPdeava~GAaiqggvl~ge--VkdvlLLdVtpLsLg 420 (640)
T KOG0102|consen 343 ALRDASLSSSDINEVILVGGMTRMPKVQSTVKELFGKGPSKGVNPDEAVAGGAAIQGGVLSGE--VKDVLLLDVTPLSLG 420 (640)
T ss_pred HHHhccCChhhhhhhhhhcchhhcHHHHHHHHHHhCCCCCCCcCCcchhccchhhccchhhcc--ccceeeeecchHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998 889999999999999
Q ss_pred EEecCCCCCCCCCCc-eEEEecCCCCcCceEEEEeeeC----CCEEEEEEEecC-cCCCCcccceEEeeccCCCCCCCcc
Q psy740 347 MEWDPSPNEPKDSKN-FITVFPEMHAAPFSKKMTFYQN----KPFAIQLYYEGN-VPYPSKFIGKYQINDVKPGPDNASQ 420 (763)
Q Consensus 347 i~~~~~~~~~~~~~~-~~~l~~~~~~iP~~k~~~f~~~----~~~~i~i~~~~~-~~~~~~~ig~~~i~~i~~~~~g~~~ 420 (763)
|+.-+ + +..||++|+.||++++..|.+. ..+.|.+++|+. +..+|..+|.|.+.||||.|+|.++
T Consensus 421 ietlg---------gvft~Li~rnttIptkksqvfstaadgqt~V~ikv~qgere~~~dnk~lG~f~l~gipp~pRgvpq 491 (640)
T KOG0102|consen 421 IETLG---------GVFTKLIPRNTTIPTKKSQVFSTAADGQTQVEIKVFQGEREMVNDNKLLGSFILQGIPPAPRGVPQ 491 (640)
T ss_pred HHhhh---------hhheecccCCcccCchhhhheeecccCCceEEEEeeechhhhhccCcccceeeecccCCCCCCCCc
Confidence 99875 4 4489999999999999999764 347899999987 8889999999999999999999995
Q ss_pred eEEEEEEEcCCccEEEEEeeeeEeeccCCCCCCCcccccccccccccccCCccccccccccccCCcchhHhHHHhhhccc
Q psy740 421 KVTVKVRVNMDGVIGVIAASMVEKVENSGDTESMDVENTEEENGQKQEAGSENTENKAEKTQEGQSEDAEKKAAEAKKKV 500 (763)
Q Consensus 421 ~i~v~~~vd~~Gil~v~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~K~ 500 (763)
|.|+|.+|.|||++|++.+ +.
T Consensus 492 -ieVtfDIdanGI~~vsA~d---k~------------------------------------------------------- 512 (640)
T KOG0102|consen 492 -IEVTFDIDANGIGTVSAKD---KG------------------------------------------------------- 512 (640)
T ss_pred -eeEEEeecCCceeeeehhh---cc-------------------------------------------------------
Confidence 9999999999999999852 11
Q ss_pred cceeeeeeEeecCCCCCHHHHHHHHHHHHhhhhchHHHHHHHHHhhhhHHHHHHHHHHccchHHhhccCCHHHHHHHHHH
Q psy740 501 VSKTLDLTISATTHGLSPEQLNAHTELEGKMIADDKLEKERIDARNCLEEYVYDLRNKLGSEEEFALYIAADDASKLSTQ 580 (763)
Q Consensus 501 ~~k~~~~~i~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~ea~N~LEs~iy~~R~~L~~~~~~~~~~teeer~~l~~~ 580 (763)
+.|...+++.. ..+||.++++.++...+.+...|..++++.+..|..++++|+.-..+. .|.+-.+-++..+|...
T Consensus 513 t~K~qsi~i~~-sggLs~~ei~~mV~eaer~~~~d~~~~~~ie~~nka~s~~~~te~~~~---~~~~~~~~~~~~~i~~~ 588 (640)
T KOG0102|consen 513 TGKSQSITIAS-SGGLSKDEIELMVGEAERLASTDKEKREAIETKNKADSIIYDTEKSLK---EFEEKIPAEECEKLEEK 588 (640)
T ss_pred cCCccceEEee-cCCCCHHHHHHHHHHHHHHHhhhHHHHHHhhhhcchhheecCchhhhh---hhhhhCcHHHHHHHHHH
Confidence 12333455544 357999999999999999999999999999999999999999999885 68888888888899999
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHH
Q psy740 581 LDETENWLYEEGADVNKSVYISKLDELKAIGEKIR 615 (763)
Q Consensus 581 l~e~~~WL~~~g~~a~~~~~~~kl~eL~~~~~pi~ 615 (763)
+....+.+-.- ...+.+....+...|+....|+.
T Consensus 589 i~~l~~~~~~~-~~~~~~~~k~~~~~l~q~~lkl~ 622 (640)
T KOG0102|consen 589 ISDLRELVANK-DSGDMEEIKKAMSALQQASLKLF 622 (640)
T ss_pred HHHHHHHHhhh-ccCChhhHHHHHHHHHHhhhHHH
Confidence 99888888521 11233666666666666666665
No 18
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=1e-74 Score=663.14 Aligned_cols=496 Identities=20% Similarity=0.318 Sum_probs=420.3
Q ss_pred ceEEEEcCccceEEEEEECCceeEEcCCCCCccccEEEEeeCCceEEcHHHHHhHhhccCchHHHhhhhhCCCCCChHHH
Q psy740 5 SVIGIDFGNESCFIAAARAGGIETIANDYSLRATPSCVAFSDRNRILGVAAKNQTVTNMKNTIHGFKRLIGREFKDPHVQ 84 (763)
Q Consensus 5 ~viGID~GTt~s~va~~~~g~~~iv~n~~~~r~~PS~V~~~~~~~~~G~~A~~~~~~~p~~~~~~~KrllG~~~~d~~~~ 84 (763)
.+||||||||||+||++.+|+++++.|..|+|.|||+|+|.++++++|..| +++++|||||+.+++....
T Consensus 20 ~viGIDlGTT~S~va~~~~~~~~ii~n~~g~~~tPS~V~f~~~~~~vG~~A----------ti~~~KrliG~~~~~~~~~ 89 (595)
T PRK01433 20 IAVGIDFGTTNSLIAIATNRKVKVIKSIDDKELIPTTIDFTSNNFTIGNNK----------GLRSIKRLFGKTLKEILNT 89 (595)
T ss_pred eEEEEEcCcccEEEEEEeCCeeEEEECCCCCeecCeEEEEcCCCEEECchh----------hHHHHHHHhCCCchhhccc
Confidence 489999999999999999999999999999999999999998889999887 7999999999998763211
Q ss_pred hhhhcCCceeeeCCCCCeEEEEEecCCceeeCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEeecccCCHHHHHHHHHHHh
Q psy740 85 DELKFLPYNVSENPDGSIGIKVKYLNEDRVFTPEQITAMLLTKLRETSEIALQCNISDCVLSVPSFYTNAERKALLDAAK 164 (763)
Q Consensus 85 ~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~peev~a~~L~~lk~~ae~~~~~~v~~~VITVPa~f~~~qR~al~~Aa~ 164 (763)
..............++...+.+ .+..++|++|++++|++|++.|+.++|.++.++|||||+||++.||+++++||+
T Consensus 90 ~~~~~~~k~~~~~~~~~~~~~~----~~~~~speei~a~iL~~lk~~ae~~lg~~v~~aVITVPa~f~~~qR~a~~~Aa~ 165 (595)
T PRK01433 90 PALFSLVKDYLDVNSSELKLNF----ANKQLRIPEIAAEIFIYLKNQAEEQLKTNITKAVITVPAHFNDAARGEVMLAAK 165 (595)
T ss_pred hhhHhhhhheeecCCCeeEEEE----CCEEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHH
Confidence 1110111112222223333332 257899999999999999999999999999999999999999999999999999
Q ss_pred -----------------------------------------------------HhhhcCCCCCchhHHHHHHHHHHHHHH
Q psy740 165 -----------------------------------------------------IIASAANPYLGGRNIDYKLAKHFSQEF 191 (763)
Q Consensus 165 -----------------------------------------------------vl~~~~d~~lGG~d~D~~l~~~~~~~~ 191 (763)
|++++||.+|||+|||.+|++|+..+|
T Consensus 166 ~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSi~~~~~~~~~V~at~gd~~lGG~d~D~~l~~~~~~~~ 245 (595)
T PRK01433 166 IAGFEVLRLIAEPTAAAYAYGLNKNQKGCYLVYDLGGGTFDVSILNIQEGIFQVIATNGDNMLGGNDIDVVITQYLCNKF 245 (595)
T ss_pred HcCCCEEEEecCcHHHHHHHhcccCCCCEEEEEECCCCcEEEEEEEEeCCeEEEEEEcCCcccChHHHHHHHHHHHHHhc
Confidence 788999999999999999999999887
Q ss_pred HhhcCCCCCCCHHHHHHHHHHHHHHHHhccCCCceeeEEeeccccCcccEEEeeHHHHHHHhHHHHHHHHHHHHHHHHHc
Q psy740 192 KQKYNIEPESNPRAFLRLLTEVEKLKKQMSANSTKLPFGIECFMNDIDVKGEMCRSEMEELCKDVFENVEKTLKDCLEKS 271 (763)
Q Consensus 192 ~~~~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~~~~~~ie~l~~~~d~~~~itr~~fe~l~~~l~~~i~~~i~~~l~~a 271 (763)
.. ..+.+ .++.||++|+.||.+.. +.+ ..++|||++|+++|+|+++++..+++++|+++
T Consensus 246 ~~------~~~~~----~~~~~ekaK~~LS~~~~---~~~--------~~~~itr~efe~l~~~l~~~~~~~i~~~L~~a 304 (595)
T PRK01433 246 DL------PNSID----TLQLAKKAKETLTYKDS---FNN--------DNISINKQTLEQLILPLVERTINIAQECLEQA 304 (595)
T ss_pred CC------CCCHH----HHHHHHHHHHhcCCCcc---ccc--------ceEEEcHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 42 22222 33459999999998652 111 16799999999999999999999999999999
Q ss_pred CCCCCCccEEEEecCCCCcHHHHHHHHHhcCCCCCCCCChhHHHHhHHHHHcchhcCCccccccEEEEecccceEEEecC
Q psy740 272 KLALSDIHSVEIVGGSSRIPAIKGLIEKIFQKTPSTTLNQDEAVARGCALQCAMLSPAVRVRDFSVTDLQVYPVVMEWDP 351 (763)
Q Consensus 272 ~~~~~~i~~V~lvGGssriP~v~~~l~~~fg~~~~~~~n~deaVa~GAa~~aa~ls~~~~~~~~~~~d~~~~~i~i~~~~ 351 (763)
+ ..+|+.|+||||+||||+|+++|+++||.++..++|||+|||+|||++|+++++.+ +++.+.|++|++||+++.+
T Consensus 305 ~--~~~Id~ViLvGGssriP~v~~~l~~~f~~~~~~~~npdeaVA~GAAi~a~~l~~~~--~~~~l~Dv~p~slgi~~~~ 380 (595)
T PRK01433 305 G--NPNIDGVILVGGATRIPLIKDELYKAFKVDILSDIDPDKAVVWGAALQAENLIAPH--TNSLLIDVVPLSLGMELYG 380 (595)
T ss_pred C--cccCcEEEEECCcccChhHHHHHHHHhCCCceecCCchHHHHHHHHHHHHHhhCCc--cceEEEEecccceEEEecC
Confidence 8 67899999999999999999999999998888999999999999999999998763 5789999999999999975
Q ss_pred CCCCCCCCCceEEEecCCCCcCceEEEEeeeC----CCEEEEEEEecC-cCCCCcccceEEeeccCCCCCCCcceEEEEE
Q psy740 352 SPNEPKDSKNFITVFPEMHAAPFSKKMTFYQN----KPFAIQLYYEGN-VPYPSKFIGKYQINDVKPGPDNASQKVTVKV 426 (763)
Q Consensus 352 ~~~~~~~~~~~~~l~~~~~~iP~~k~~~f~~~----~~~~i~i~~~~~-~~~~~~~ig~~~i~~i~~~~~g~~~~i~v~~ 426 (763)
+ .+.+||++|++||++++..|++. ..+.|.+|+|+. ++.+|..||+|.|.|+++.+.|.+ +|.|+|
T Consensus 381 ----g----~~~~ii~rnt~iP~~~~~~f~t~~d~q~~v~i~v~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~-~i~vtf 451 (595)
T PRK01433 381 ----G----IVEKIIMRNTPIPISVVKEFTTYADNQTGIQFHILQGEREMAADCRSLARFELKGLPPMKAGSI-RAEVTF 451 (595)
T ss_pred ----C----EEEEEEECCCcccceeeEEeEeecCCCeEEEEEEEeccccccCCCcEEEEEEEcCCCCCCCCCc-cEEEEE
Confidence 1 34589999999999998888653 247899999987 778899999999999999998876 599999
Q ss_pred EEcCCccEEEEEeeeeEeeccCCCCCCCcccccccccccccccCCccccccccccccCCcchhHhHHHhhhccccceeee
Q psy740 427 RVNMDGVIGVIAASMVEKVENSGDTESMDVENTEEENGQKQEAGSENTENKAEKTQEGQSEDAEKKAAEAKKKVVSKTLD 506 (763)
Q Consensus 427 ~vd~~Gil~v~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~K~~~k~~~ 506 (763)
.+|.||+|+|++.+. . ..+...
T Consensus 452 ~id~~Gil~V~a~~~---~-------------------------------------------------------t~~~~~ 473 (595)
T PRK01433 452 AIDADGILSVSAYEK---I-------------------------------------------------------SNTSHA 473 (595)
T ss_pred EECCCCcEEEEEEEc---C-------------------------------------------------------CCcEEE
Confidence 999999999998521 1 022334
Q ss_pred eeEeecCCCCCHHHHHHHHHHHHhhhhchHHHHHHHHHhhhhHHHHHHHHHHccchHHhhccCCHHHHHHHHHHHHHHHH
Q psy740 507 LTISATTHGLSPEQLNAHTELEGKMIADDKLEKERIDARNCLEEYVYDLRNKLGSEEEFALYIAADDASKLSTQLDETEN 586 (763)
Q Consensus 507 ~~i~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~ea~N~LEs~iy~~R~~L~~~~~~~~~~teeer~~l~~~l~e~~~ 586 (763)
+.|.. ..+|+.++++++++...++...|...+++.+++|.+|+++|.++..++ ++...+++++|+.+...+++.++
T Consensus 474 ~~i~~-~~~ls~~ei~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~i~~~~~~~~~ 549 (595)
T PRK01433 474 IEVKP-NHGIDKTEIDIMLENAYKNAKIDYTTRLLQEAVIEAEALIFNIERAIA---ELTTLLSESEISIINSLLDNIKE 549 (595)
T ss_pred EEecC-CCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH---HhhccCCHHHHHHHHHHHHHHHH
Confidence 45543 346999999999999999999999999999999999999999999996 36677899999999999999999
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHHHHHHH
Q psy740 587 WLYEEGADVNKSVYISKLDELKAIGEKI 614 (763)
Q Consensus 587 WL~~~g~~a~~~~~~~kl~eL~~~~~pi 614 (763)
||..+ +...+.+++++|+....+.
T Consensus 550 ~l~~~----~~~~~~~~~~~~~~~~~~~ 573 (595)
T PRK01433 550 AVHAR----DIILINNSIKEFKSKIKKS 573 (595)
T ss_pred HHhcC----CHHHHHHHHHHHHHHHHHH
Confidence 99733 6678888888888888883
No 19
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-73 Score=646.04 Aligned_cols=513 Identities=32% Similarity=0.488 Sum_probs=464.4
Q ss_pred cceEEEEcCccceEEEEEECC-ceeEEcCCCCCccccEEEEeeCC-ceEEcHHHHHhHhhccCchHHHhhhhhCCCCCCh
Q psy740 4 MSVIGIDFGNESCFIAAARAG-GIETIANDYSLRATPSCVAFSDR-NRILGVAAKNQTVTNMKNTIHGFKRLIGREFKDP 81 (763)
Q Consensus 4 ~~viGID~GTt~s~va~~~~g-~~~iv~n~~~~r~~PS~V~~~~~-~~~~G~~A~~~~~~~p~~~~~~~KrllG~~~~d~ 81 (763)
+.+|||||||||||||+++++ .+.++.|..|.|.+||+|+|..+ ++++|..|+.++..+|.++++.+||++|+.-..
T Consensus 5 ~~~iGIDlGTTNS~vA~~~~~~~~~vi~n~~g~r~~PSvv~f~~~~~~~vG~~A~~q~~~~p~~t~~~~kr~~G~~~~~- 83 (579)
T COG0443 5 KKAIGIDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDNPENTIFSIKRKIGRGSNG- 83 (579)
T ss_pred ceEEEEEcCCCcEEEEEEeCCCCceEecCCCCCcccceEEEECCCCCEEecHHHHHHhhhCCcceEEEEehhcCCCCCC-
Confidence 578999999999999999988 79999999999999999999977 499999999999999999999999999987110
Q ss_pred HHHhhhhcCCceeeeCCCCCeEEEEEecCCceeeCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEeecccCCHHHHHHHHH
Q psy740 82 HVQDELKFLPYNVSENPDGSIGIKVKYLNEDRVFTPEQITAMLLTKLRETSEIALQCNISDCVLSVPSFYTNAERKALLD 161 (763)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~peev~a~~L~~lk~~ae~~~~~~v~~~VITVPa~f~~~qR~al~~ 161 (763)
..+.+.. .++.++|++|++++|.+|++.|+.+++..+.++||||||||++.||+++.+
T Consensus 84 --------------------~~~~~~~--~~~~~~~eeisa~~L~~lk~~ae~~lg~~v~~~VItVPayF~d~qR~at~~ 141 (579)
T COG0443 84 --------------------LKISVEV--DGKKYTPEEISAMILTKLKEDAEAYLGEKVTDAVITVPAYFNDAQRQATKD 141 (579)
T ss_pred --------------------Ccceeee--CCeeeCHHHHHHHHHHHHHHHHHHhhCCCcceEEEEeCCCCCHHHHHHHHH
Confidence 0111222 137899999999999999999999999999999999999999999999999
Q ss_pred HHh-----------------------------------------------------HhhhcCCCCCchhHHHHHHHHHHH
Q psy740 162 AAK-----------------------------------------------------IIASAANPYLGGRNIDYKLAKHFS 188 (763)
Q Consensus 162 Aa~-----------------------------------------------------vl~~~~d~~lGG~d~D~~l~~~~~ 188 (763)
|++ |++++||.+|||+|||.+|++|+.
T Consensus 142 A~~iaGl~vlrlinEPtAAAlayg~~~~~~~~vlV~DlGGGTfDvSll~~~~g~~ev~at~gd~~LGGddfD~~l~~~~~ 221 (579)
T COG0443 142 AARIAGLNVLRLINEPTAAALAYGLDKGKEKTVLVYDLGGGTFDVSLLEIGDGVFEVLATGGDNHLGGDDFDNALIDYLV 221 (579)
T ss_pred HHHHcCCCeEEEecchHHHHHHhHhccCCCcEEEEEEcCCCCEEEEEEEEcCCEEEEeecCCCcccCchhHHHHHHHHHH
Confidence 999 899999999999999999999999
Q ss_pred HHHHhhcCCCCCCCHHHHHHHHHHHHHHHHhccCCCceeeEEeeccccCcccEEEeeHHHHHHHhHHHHHHHHHHHHHHH
Q psy740 189 QEFKQKYNIEPESNPRAFLRLLTEVEKLKKQMSANSTKLPFGIECFMNDIDVKGEMCRSEMEELCKDVFENVEKTLKDCL 268 (763)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~~~~~~ie~l~~~~d~~~~itr~~fe~l~~~l~~~i~~~i~~~l 268 (763)
.+|..++++++..+++++.||+.+|+++|+.||+.. .+.++++++..+.++..+|||++||+++.+++.++..+++.+|
T Consensus 222 ~~f~~~~~~d~~~~~~~~~rL~~~ae~aK~~LS~~~-~~~i~~~~~~~~~~~~~~ltR~~~E~l~~dll~r~~~~~~~al 300 (579)
T COG0443 222 MEFKGKGGIDLRSDKAALQRLREAAEKAKIELSSAT-QTSINLPSIGGDIDLLKELTRAKFEELILDLLERTIEPVEQAL 300 (579)
T ss_pred HHhhccCCccccccHHHHHHHHHHHHHHHHHccccc-ccccchhhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999976 4788888887788899999999999999999999999999999
Q ss_pred HHcCCCCCCccEEEEecCCCCcHHHHHHHHHhcCCCCCCCCChhHHHHhHHHHHcchhcCCccccccEEEEecccceEEE
Q psy740 269 EKSKLALSDIHSVEIVGGSSRIPAIKGLIEKIFQKTPSTTLNQDEAVARGCALQCAMLSPAVRVRDFSVTDLQVYPVVME 348 (763)
Q Consensus 269 ~~a~~~~~~i~~V~lvGGssriP~v~~~l~~~fg~~~~~~~n~deaVa~GAa~~aa~ls~~~~~~~~~~~d~~~~~i~i~ 348 (763)
.+++++..+|+.|+||||+||||.|++.|+++||.++..++||||+||.|||++|+.+++... ++.+.|++|+++|++
T Consensus 301 ~~a~l~~~~I~~VilvGGstriP~V~~~v~~~f~~~~~~~inpdeava~GAa~qa~~l~~~~~--d~ll~Dv~plslgie 378 (579)
T COG0443 301 KDAGLEKSDIDLVILVGGSTRIPAVQELVKEFFGKEPEKSINPDEAVALGAAIQAAVLSGEVP--DVLLLDVIPLSLGIE 378 (579)
T ss_pred HHcCCChhhCceEEEccceeccHHHHHHHHHHhCccccccCCccHHHHHHHHHHHHhhcCccc--CceEEeeeeeccccc
Confidence 999999999999999999999999999999999999999999999999999999999999854 899999999999999
Q ss_pred ecCCCCCCCCCCceEEEecCCCCcCceEEEEeeeCC----CEEEEEEEecC-cCCCCcccceEEeeccCCCCCCCcceEE
Q psy740 349 WDPSPNEPKDSKNFITVFPEMHAAPFSKKMTFYQNK----PFAIQLYYEGN-VPYPSKFIGKYQINDVKPGPDNASQKVT 423 (763)
Q Consensus 349 ~~~~~~~~~~~~~~~~l~~~~~~iP~~k~~~f~~~~----~~~i~i~~~~~-~~~~~~~ig~~~i~~i~~~~~g~~~~i~ 423 (763)
+.+. -...+|++|+.+|.++...|.+.. ...+.+++|+. +..+|..+|.|.+.+++|.++|.++ |.
T Consensus 379 ~~~~--------~~~~ii~rn~~iP~~~~~~f~t~~d~q~~~~i~v~qge~~~~~~~~~lg~f~l~~i~~~~~g~~~-i~ 449 (579)
T COG0443 379 TLGG--------VRTPIIERNTTIPVKKSQEFSTAADGQTAVAIHVFQGEREMAADNKSLGRFELDGIPPAPRGVPQ-IE 449 (579)
T ss_pred cCcc--------hhhhHHhcCCCCCcccceEEEeecCCCceeEEEEEecchhhcccCceeEEEECCCCCCCCCCCCc-eE
Confidence 8761 234799999999999998886543 36788888877 7789999999999999999999985 99
Q ss_pred EEEEEcCCccEEEEEeeeeEeeccCCCCCCCcccccccccccccccCCccccccccccccCCcchhHhHHHhhhccccce
Q psy740 424 VKVRVNMDGVIGVIAASMVEKVENSGDTESMDVENTEEENGQKQEAGSENTENKAEKTQEGQSEDAEKKAAEAKKKVVSK 503 (763)
Q Consensus 424 v~~~vd~~Gil~v~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~K~~~k 503 (763)
|+|.+|.||+++|++.++ . ..+
T Consensus 450 v~f~iD~~gi~~v~a~~~---~-------------------------------------------------------~~k 471 (579)
T COG0443 450 VTFDIDANGILNVTAKDL---G-------------------------------------------------------TGK 471 (579)
T ss_pred EEeccCCCcceEeeeecc---c-------------------------------------------------------CCc
Confidence 999999999999998422 0 134
Q ss_pred eeeeeEeecCCCCCHHHHHHHHHHHHhhhhchHHHHHHHHHhhhhHHHHHHHHHHccchHHhhccCCHHHHHHHHHHHHH
Q psy740 504 TLDLTISATTHGLSPEQLNAHTELEGKMIADDKLEKERIDARNCLEEYVYDLRNKLGSEEEFALYIAADDASKLSTQLDE 583 (763)
Q Consensus 504 ~~~~~i~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~ea~N~LEs~iy~~R~~L~~~~~~~~~~teeer~~l~~~l~e 583 (763)
...+.|..... |+.++++.+.+....+...|...++..+.+|.+++++|.++..|.+ .. .+.+++++.+...+.+
T Consensus 472 ~~~i~i~~~~~-ls~~~i~~~~~~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~l~~--~~--~~~~~~~~~~~~~~~~ 546 (579)
T COG0443 472 EQSITIKASSG-LSDEEIERMVEDAEANAALDKKFRELVEARNEAESLIYSLEKALKE--IV--KVSEEEKEKIEEAITD 546 (579)
T ss_pred eEEEEEecCCC-CCHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHhh--hc--cCCHHHHHHHHHHHHH
Confidence 45567766555 9999999999999999999999999999999999999999999973 22 8899999999999999
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy740 584 TENWLYEEGADVNKSVYISKLDELKAIGEKIRQRKV 619 (763)
Q Consensus 584 ~~~WL~~~g~~a~~~~~~~kl~eL~~~~~pi~~R~~ 619 (763)
+++||+. . .++++.+.++|+....++..++.
T Consensus 547 ~~~~l~~--~---~~~~~~~~~~l~~~~~~~~~~~~ 577 (579)
T COG0443 547 LEEALEG--E---KEEIKAKIEELQEVTQKLAEKKY 577 (579)
T ss_pred HHHHHhc--c---HHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999997 1 88999999999999999887654
No 20
>PRK11678 putative chaperone; Provisional
Probab=100.00 E-value=5.7e-44 Score=396.06 Aligned_cols=284 Identities=20% Similarity=0.343 Sum_probs=240.8
Q ss_pred eEEEEcCccceEEEEEECCceeEEcCCCCCccccEEEEee----------------------------------------
Q psy740 6 VIGIDFGNESCFIAAARAGGIETIANDYSLRATPSCVAFS---------------------------------------- 45 (763)
Q Consensus 6 viGID~GTt~s~va~~~~g~~~iv~n~~~~r~~PS~V~~~---------------------------------------- 45 (763)
+||||||||||+||++.+|.+++|.++.|.+.+||+|+|.
T Consensus 2 ~iGID~GTtNs~va~~~~~~~~li~~~~~~~~~pS~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (450)
T PRK11678 2 FIGFDYGTANCSVAVMRDGKPRLLPLENDSTYLPSTLCAPTREAVSEWLYRHLDVPAYDDERQALLRRAIRYNREEDIDV 81 (450)
T ss_pred eEEEecCccceeeEEeeCCceEEEEcCCCCCcCCeeeeccCchhhhhhhhhhcccCcccchhhhhhhhhhhhcccccccc
Confidence 5899999999999999999999999999999999999994
Q ss_pred -CCceEEcHHHHHhHhhccCch--HHHhhhhhCCCCCChHHHhhhhcCCceeeeCCCCCeEEEEEecCCceeeCHHHHHH
Q psy740 46 -DRNRILGVAAKNQTVTNMKNT--IHGFKRLIGREFKDPHVQDELKFLPYNVSENPDGSIGIKVKYLNEDRVFTPEQITA 122 (763)
Q Consensus 46 -~~~~~~G~~A~~~~~~~p~~~--~~~~KrllG~~~~d~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~peev~a 122 (763)
++..+||..|+.+...+|.++ +.++||+||...-. ......++++++
T Consensus 82 ~~~~~~~G~~A~~~~~~~p~~~r~i~s~Kr~lg~~~~~------------------------------~~~~~~~e~l~a 131 (450)
T PRK11678 82 TAQSVFFGLAALAQYLEDPEEVYFVKSPKSFLGASGLK------------------------------PQQVALFEDLVC 131 (450)
T ss_pred cccccchhHHHHHhhccCCCCceEEecchhhhccCCCC------------------------------ccceeCHHHHHH
Confidence 345679999999999999998 67999999975211 012234899999
Q ss_pred HHHHHHHHHHHHHhcCCCCcEEEeecccCC-----HHHHHH---HHHHHh------------------------------
Q psy740 123 MLLTKLRETSEIALQCNISDCVLSVPSFYT-----NAERKA---LLDAAK------------------------------ 164 (763)
Q Consensus 123 ~~L~~lk~~ae~~~~~~v~~~VITVPa~f~-----~~qR~a---l~~Aa~------------------------------ 164 (763)
++|++|++.|+.++|.++.+||||||+||+ +.||+| +.+||+
T Consensus 132 ~iL~~lk~~ae~~~g~~v~~~VItvPa~F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~~~~~~v 211 (450)
T PRK11678 132 AMMLHIKQQAEAQLQAAITQAVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFEATLTEEKRV 211 (450)
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEECCccccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhccccCCCCeE
Confidence 999999999999999999999999999999 888877 689998
Q ss_pred ------------------------------HhhhcCCCCCchhHHHHHHH-HHHHHHHHh----hcCCCC----------
Q psy740 165 ------------------------------IIASAANPYLGGRNIDYKLA-KHFSQEFKQ----KYNIEP---------- 199 (763)
Q Consensus 165 ------------------------------vl~~~~d~~lGG~d~D~~l~-~~~~~~~~~----~~~~~~---------- 199 (763)
|++++|+ +|||+|||..|+ +|+...|.. ++++++
T Consensus 212 lV~D~GGGT~D~Svv~~~~~~~~~~~r~~~vla~~G~-~lGG~DfD~~L~~~~~~~~fg~~~~~~~g~~~p~~~~~~~~~ 290 (450)
T PRK11678 212 LVVDIGGGTTDCSMLLMGPSWRGRADRSASLLGHSGQ-RIGGNDLDIALAFKQLMPLLGMGSETEKGIALPSLPFWNAVA 290 (450)
T ss_pred EEEEeCCCeEEEEEEEecCcccccCCcceeEEecCCC-CCChHHHHHHHHHHHHHHHhhhchhhccCCcCcchhhhhhhh
Confidence 5666674 799999999998 678887752 222211
Q ss_pred -------------------------CCCHHHH------------HHHHHHHHHHHHhccCCCceeeEEeeccccCcccEE
Q psy740 200 -------------------------ESNPRAF------------LRLLTEVEKLKKQMSANSTKLPFGIECFMNDIDVKG 242 (763)
Q Consensus 200 -------------------------~~~~~~~------------~rL~~~aek~K~~LS~~~~~~~~~ie~l~~~~d~~~ 242 (763)
..+++.+ .+|+.+||++|+.||.+. .+.+.++++. .++..
T Consensus 291 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~~rl~~l~~~~~~~~L~~~aE~aK~~LS~~~-~a~i~~~~~~--~~~~~ 367 (450)
T PRK11678 291 INDVPAQSDFYSLANGRLLNDLIRDAREPEKVARLLKVWRQRLSYRLVRSAEEAKIALSDQA-ETRASLDFIS--DGLAT 367 (450)
T ss_pred hhccchhhhhhhhhhHHHHHHHhhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHcCCCC-ceEEEecccC--CCcce
Confidence 1133333 378899999999999976 4678887654 45778
Q ss_pred EeeHHHHHHHhHHHHHHHHHHHHHHHHHcCCCCCCccEEEEecCCCCcHHHHHHHHHhcCCCCCCCCChhHHHHhHHHHH
Q psy740 243 EMCRSEMEELCKDVFENVEKTLKDCLEKSKLALSDIHSVEIVGGSSRIPAIKGLIEKIFQKTPSTTLNQDEAVARGCALQ 322 (763)
Q Consensus 243 ~itr~~fe~l~~~l~~~i~~~i~~~l~~a~~~~~~i~~V~lvGGssriP~v~~~l~~~fg~~~~~~~n~deaVa~GAa~~ 322 (763)
+|||++|+++|+++++++..+|+++|+.+++. ++.|+||||+||||.|++.|.+.||.......+|.++||.|+|++
T Consensus 368 ~ItR~efe~ii~~~l~ri~~~i~~~L~~a~~~---~d~VvLvGGsSriP~V~~~l~~~fg~~~v~~g~~~~sVa~Gla~~ 444 (450)
T PRK11678 368 EISQQGLEEAISQPLARILELVQLALDQAQVK---PDVIYLTGGSARSPLIRAALAQQLPGIPIVGGDDFGSVTAGLARW 444 (450)
T ss_pred eeCHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---CCEEEEcCcccchHHHHHHHHHHCCCCcEEeCCCcchHHHHHHHH
Confidence 99999999999999999999999999999986 579999999999999999999999877677889999999999999
Q ss_pred cchh
Q psy740 323 CAML 326 (763)
Q Consensus 323 aa~l 326 (763)
|+.+
T Consensus 445 a~~~ 448 (450)
T PRK11678 445 AQVV 448 (450)
T ss_pred HHhh
Confidence 9753
No 21
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=99.97 E-value=1.2e-28 Score=267.35 Aligned_cols=261 Identities=17% Similarity=0.232 Sum_probs=196.8
Q ss_pred eEEEEcCccceEEEEEECCceeEEcCCCCCccccEEEEeeCC--c-eEEcHHHHHhHhhccCchHHHhhhhhCCCCCChH
Q psy740 6 VIGIDFGNESCFIAAARAGGIETIANDYSLRATPSCVAFSDR--N-RILGVAAKNQTVTNMKNTIHGFKRLIGREFKDPH 82 (763)
Q Consensus 6 viGID~GTt~s~va~~~~g~~~iv~n~~~~r~~PS~V~~~~~--~-~~~G~~A~~~~~~~p~~~~~~~KrllG~~~~d~~ 82 (763)
-+||||||+||+|+....| .++. +||+|+|... . ..+|..|+.+..+.|.+... .
T Consensus 5 ~~gIDlGt~~~~i~~~~~~--~v~~-------~psvv~~~~~~~~i~~vG~~A~~~~~~~p~~~~~------~------- 62 (336)
T PRK13928 5 DIGIDLGTANVLVYVKGKG--IVLN-------EPSVVAIDKNTNKVLAVGEEARRMVGRTPGNIVA------I------- 62 (336)
T ss_pred eeEEEcccccEEEEECCCC--EEEc-------cCCEEEEECCCCeEEEecHHHHHhhhcCCCCEEE------E-------
Confidence 4899999999999887333 3332 5999999954 2 35899998776555544321 0
Q ss_pred HHhhhhcCCceeeeCCCCCeEEEEEecCCceeeCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEeecccCCHHHHHHHHHH
Q psy740 83 VQDELKFLPYNVSENPDGSIGIKVKYLNEDRVFTPEQITAMLLTKLRETSEIALQCNISDCVLSVPSFYTNAERKALLDA 162 (763)
Q Consensus 83 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~peev~a~~L~~lk~~ae~~~~~~v~~~VITVPa~f~~~qR~al~~A 162 (763)
.|+ .+ ..+...+++..+|+++.+.+..........+|||||++|++.||+++.+|
T Consensus 63 -------~pi-----~~-------------G~i~d~~~~~~~l~~~~~~~~~~~~~~~p~~vitvP~~~~~~~r~~~~~a 117 (336)
T PRK13928 63 -------RPL-----RD-------------GVIADYDVTEKMLKYFINKACGKRFFSKPRIMICIPTGITSVEKRAVREA 117 (336)
T ss_pred -------ccC-----CC-------------CeEecHHHHHHHHHHHHHHHhccCCCCCCeEEEEeCCCCCHHHHHHHHHH
Confidence 111 11 12344456777888887655433223344799999999999999999999
Q ss_pred Hh------------------------------------------------HhhhcCCCCCchhHHHHHHHHHHHHHHHhh
Q psy740 163 AK------------------------------------------------IIASAANPYLGGRNIDYKLAKHFSQEFKQK 194 (763)
Q Consensus 163 a~------------------------------------------------vl~~~~d~~lGG~d~D~~l~~~~~~~~~~~ 194 (763)
++ -....++..+||++||+.|++++..+|.-.
T Consensus 118 ~~~ag~~~~~li~ep~Aaa~~~g~~~~~~~~~lVvDiGggttdvsvv~~g~~~~~~~~~lGG~did~~i~~~l~~~~~~~ 197 (336)
T PRK13928 118 AEQAGAKKVYLIEEPLAAAIGAGLDISQPSGNMVVDIGGGTTDIAVLSLGGIVTSSSIKVAGDKFDEAIIRYIRKKYKLL 197 (336)
T ss_pred HHHcCCCceEecccHHHHHHHcCCcccCCCeEEEEEeCCCeEEEEEEEeCCEEEeCCcCCHHHHHHHHHHHHHHHHhchh
Confidence 99 111345678999999999999999877521
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHHhccCCCc---eeeEEe--eccccCcccEEEeeHHHHHHHhHHHHHHHHHHHHHHHH
Q psy740 195 YNIEPESNPRAFLRLLTEVEKLKKQMSANST---KLPFGI--ECFMNDIDVKGEMCRSEMEELCKDVFENVEKTLKDCLE 269 (763)
Q Consensus 195 ~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~---~~~~~i--e~l~~~~d~~~~itr~~fe~l~~~l~~~i~~~i~~~l~ 269 (763)
.. ...||++|+.++.... ...+.+ ..+..+.+..+.|+|++|++++.++++++..+|+++|+
T Consensus 198 ----~~---------~~~ae~lK~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~i~~~~~~eii~~~~~~i~~~i~~~l~ 264 (336)
T PRK13928 198 ----IG---------ERTAEEIKIKIGTAFPGAREEEMEIRGRDLVTGLPKTITVTSEEIREALKEPVSAIVQAVKSVLE 264 (336)
T ss_pred ----cC---------HHHHHHHHHHhcccccccCCcEEEEecccccCCCceEEEECHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 2579999999875311 122222 23455677789999999999999999999999999999
Q ss_pred HcC--CCCCCcc-EEEEecCCCCcHHHHHHHHHhcCCCCCCCCChhHHHHhHHHHHcchh
Q psy740 270 KSK--LALSDIH-SVEIVGGSSRIPAIKGLIEKIFQKTPSTTLNQDEAVARGCALQCAML 326 (763)
Q Consensus 270 ~a~--~~~~~i~-~V~lvGGssriP~v~~~l~~~fg~~~~~~~n~deaVa~GAa~~aa~l 326 (763)
.++ +....++ .|+|+||+|++|.|++.|++.|+.++....||++|||+|||++++.+
T Consensus 265 ~~~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~~~~~~v~~~~~P~~ava~Gaa~~~~~~ 324 (336)
T PRK13928 265 RTPPELSADIIDRGIIMTGGGALLHGLDKLLAEETKVPVYIAEDPISCVALGTGKMLENI 324 (336)
T ss_pred hCCccccHhhcCCCEEEECcccchhhHHHHHHHHHCCCceecCCHHHHHHHHHHHHHhch
Confidence 986 4456677 79999999999999999999999988888999999999999998764
No 22
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=99.96 E-value=3.2e-28 Score=263.38 Aligned_cols=261 Identities=20% Similarity=0.276 Sum_probs=202.6
Q ss_pred CcceEEEEcCccceEEEEEECCceeEEcCCCCCccccEEEEeeCCc---eEEcHHHHHhHhhccCchHHHhhhhhCCCCC
Q psy740 3 GMSVIGIDFGNESCFIAAARAGGIETIANDYSLRATPSCVAFSDRN---RILGVAAKNQTVTNMKNTIHGFKRLIGREFK 79 (763)
Q Consensus 3 ~~~viGID~GTt~s~va~~~~g~~~iv~n~~~~r~~PS~V~~~~~~---~~~G~~A~~~~~~~p~~~~~~~KrllG~~~~ 79 (763)
....|||||||+|++| |.+++. ++.|+ ||+|+|+.+. ..+|..|+.+..+.|.++... | ++
T Consensus 3 ~~~~~giDlGt~~~~i--~~~~~~-~~~~~------ps~va~~~~~~~~~~vG~~A~~~~~~~p~~~~~~--~----pi- 66 (335)
T PRK13929 3 QSTEIGIDLGTANILV--YSKNKG-IILNE------PSVVAVDTETKAVLAIGTEAKNMIGKTPGKIVAV--R----PM- 66 (335)
T ss_pred CCCeEEEEcccccEEE--EECCCc-EEecC------CcEEEEECCCCeEEEeCHHHHHhhhcCCCcEEEE--e----cC-
Confidence 3457999999999975 555543 35553 9999998553 469999999888888775431 1 11
Q ss_pred ChHHHhhhhcCCceeeeCCCCCeEEEEEecCCceeeCHHHHHHHHHHHHHHHHHHHhcCCCC--cEEEeecccCCHHHHH
Q psy740 80 DPHVQDELKFLPYNVSENPDGSIGIKVKYLNEDRVFTPEQITAMLLTKLRETSEIALQCNIS--DCVLSVPSFYTNAERK 157 (763)
Q Consensus 80 d~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~peev~a~~L~~lk~~ae~~~~~~v~--~~VITVPa~f~~~qR~ 157 (763)
.+| .+..-++++++|++++..++..++..+. .+|||||++|++.||+
T Consensus 67 ------------------~~G-------------~I~d~d~~~~~l~~~~~~~~~~l~~~~~~~~vvitvP~~~~~~~R~ 115 (335)
T PRK13929 67 ------------------KDG-------------VIADYDMTTDLLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERR 115 (335)
T ss_pred ------------------CCC-------------ccCCHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCHHHHH
Confidence 111 1223378899999999999888876554 7999999999999999
Q ss_pred HHHHHHh-------------------------------------------Hh-----hhcCCCCCchhHHHHHHHHHHHH
Q psy740 158 ALLDAAK-------------------------------------------II-----ASAANPYLGGRNIDYKLAKHFSQ 189 (763)
Q Consensus 158 al~~Aa~-------------------------------------------vl-----~~~~d~~lGG~d~D~~l~~~~~~ 189 (763)
++.+|++ ++ ...++..+||++||+.|++|+..
T Consensus 116 ~l~~a~~~ag~~~~~li~ep~Aaa~~~g~~~~~~~~~lvvDiG~gtt~v~vi~~~~~~~~~~~~~GG~~id~~l~~~l~~ 195 (335)
T PRK13929 116 AISDAVKNCGAKNVHLIEEPVAAAIGADLPVDEPVANVVVDIGGGTTEVAIISFGGVVSCHSIRIGGDQLDEDIVSFVRK 195 (335)
T ss_pred HHHHHHHHcCCCeeEeecCHHHHHHhcCCCcCCCceEEEEEeCCCeEEEEEEEeCCEEEecCcCCHHHHHHHHHHHHHHH
Confidence 9999999 11 13346689999999999999987
Q ss_pred HHHhhcCCCCCCCHHHHHHHHHHHHHHHHhccCCCc---eeeEEee--ccccCcccEEEeeHHHHHHHhHHHHHHHHHHH
Q psy740 190 EFKQKYNIEPESNPRAFLRLLTEVEKLKKQMSANST---KLPFGIE--CFMNDIDVKGEMCRSEMEELCKDVFENVEKTL 264 (763)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~---~~~~~ie--~l~~~~d~~~~itr~~fe~l~~~l~~~i~~~i 264 (763)
.|. .... ...||++|+.|+.... ...+.+. ++..+.+..++|+|++|+++|.+++.++...|
T Consensus 196 ~~~----~~~~---------~~~AE~iK~~l~~~~~~~~~~~~~v~g~~~~~~~p~~i~i~~~~~~~~i~~~l~~i~~~i 262 (335)
T PRK13929 196 KYN----LLIG---------ERTAEQVKMEIGYALIEHEPETMEVRGRDLVTGLPKTITLESKEIQGAMRESLLHILEAI 262 (335)
T ss_pred HhC----cCcC---------HHHHHHHHHHHcCCCCCCCCceEEEeCCccCCCCCeEEEEcHHHHHHHHHHHHHHHHHHH
Confidence 653 2221 2579999999986311 1123332 24456677899999999999999999999999
Q ss_pred HHHHHHcCCC--CCCcc-EEEEecCCCCcHHHHHHHHHhcCCCCCCCCChhHHHHhHHHHHc
Q psy740 265 KDCLEKSKLA--LSDIH-SVEIVGGSSRIPAIKGLIEKIFQKTPSTTLNQDEAVARGCALQC 323 (763)
Q Consensus 265 ~~~l~~a~~~--~~~i~-~V~lvGGssriP~v~~~l~~~fg~~~~~~~n~deaVa~GAa~~a 323 (763)
.++|+.++.. ...++ .|+|+||+|++|.++++|++.||.++....||+++|++||+..-
T Consensus 263 ~~~L~~~~~~l~~~~~~~gIvLtGG~s~lpgl~e~l~~~~~~~v~~~~~P~~~Va~Ga~~~~ 324 (335)
T PRK13929 263 RATLEDCPPELSGDIVDRGVILTGGGALLNGIKEWLSEEIVVPVHVAANPLESVAIGTGRSL 324 (335)
T ss_pred HHHHHhCCcccchhhcCCCEEEEchhhhhhhHHHHHHHHHCCCceeCCCHHHHHHHHHHHHH
Confidence 9999998644 35677 69999999999999999999999998888999999999999863
No 23
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=99.95 E-value=1e-25 Score=244.69 Aligned_cols=262 Identities=18% Similarity=0.272 Sum_probs=187.8
Q ss_pred cceEEEEcCccceEEEEEECCceeEEcCCCCCccccEEEEeeCC-c--eEEcHHHHHhHhhccCchHHHhhhhhCCCCCC
Q psy740 4 MSVIGIDFGNESCFIAAARAGGIETIANDYSLRATPSCVAFSDR-N--RILGVAAKNQTVTNMKNTIHGFKRLIGREFKD 80 (763)
Q Consensus 4 ~~viGID~GTt~s~va~~~~g~~~iv~n~~~~r~~PS~V~~~~~-~--~~~G~~A~~~~~~~p~~~~~~~KrllG~~~~d 80 (763)
...|||||||+|++++.... .. ++ .+||+|+|... + .++|+.|..+..+.|.++...
T Consensus 5 ~~~igIDlGt~~~~i~~~~~-~~-~~-------~~ps~v~~~~~~~~~~~vG~~a~~~~~~~~~~~~~~----------- 64 (334)
T PRK13927 5 SNDLGIDLGTANTLVYVKGK-GI-VL-------NEPSVVAIRTDTKKVLAVGEEAKQMLGRTPGNIVAI----------- 64 (334)
T ss_pred cceeEEEcCcceEEEEECCC-cE-EE-------ecCCEEEEECCCCeEEEecHHHHHHhhcCCCCEEEE-----------
Confidence 35699999999999855432 22 32 27999999754 3 379999988766655543210
Q ss_pred hHHHhhhhcCCceeeeCCCCCeEEEEEecCCceeeCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEeecccCCHHHHHHHH
Q psy740 81 PHVQDELKFLPYNVSENPDGSIGIKVKYLNEDRVFTPEQITAMLLTKLRETSEIALQCNISDCVLSVPSFYTNAERKALL 160 (763)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~peev~a~~L~~lk~~ae~~~~~~v~~~VITVPa~f~~~qR~al~ 160 (763)
+|. .+|. .... +.+..+|+++........ .....+|||||++|++.||+++.
T Consensus 65 ---------~pi-----~~G~------------i~d~-~~~~~ll~~~~~~~~~~~-~~~~~~vi~vP~~~~~~~r~~~~ 116 (334)
T PRK13927 65 ---------RPM-----KDGV------------IADF-DVTEKMLKYFIKKVHKNF-RPSPRVVICVPSGITEVERRAVR 116 (334)
T ss_pred ---------ecC-----CCCe------------ecCH-HHHHHHHHHHHHHHhhcc-CCCCcEEEEeCCCCCHHHHHHHH
Confidence 011 1111 1111 233445555544432222 12248999999999999999999
Q ss_pred HHHh-------------------------------------------Hh-----hhcCCCCCchhHHHHHHHHHHHHHHH
Q psy740 161 DAAK-------------------------------------------II-----ASAANPYLGGRNIDYKLAKHFSQEFK 192 (763)
Q Consensus 161 ~Aa~-------------------------------------------vl-----~~~~d~~lGG~d~D~~l~~~~~~~~~ 192 (763)
+|++ ++ ...++..+||++||+.|++++.++|.
T Consensus 117 ~a~~~ag~~~~~li~ep~aaa~~~g~~~~~~~~~lvvDiGggttdvs~v~~~~~~~~~~~~lGG~~id~~l~~~l~~~~~ 196 (334)
T PRK13927 117 ESALGAGAREVYLIEEPMAAAIGAGLPVTEPTGSMVVDIGGGTTEVAVISLGGIVYSKSVRVGGDKFDEAIINYVRRNYN 196 (334)
T ss_pred HHHHHcCCCeeccCCChHHHHHHcCCcccCCCeEEEEEeCCCeEEEEEEecCCeEeeCCcCChHHHHHHHHHHHHHHHhC
Confidence 9999 11 12345679999999999999987664
Q ss_pred hhcCCCCCCCHHHHHHHHHHHHHHHHhccCCCc-----eeeEEeeccccCcccEEEeeHHHHHHHhHHHHHHHHHHHHHH
Q psy740 193 QKYNIEPESNPRAFLRLLTEVEKLKKQMSANST-----KLPFGIECFMNDIDVKGEMCRSEMEELCKDVFENVEKTLKDC 267 (763)
Q Consensus 193 ~~~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~-----~~~~~ie~l~~~~d~~~~itr~~fe~l~~~l~~~i~~~i~~~ 267 (763)
.... ...||++|+.++.... ...+..+.+..+.+..++|+|++|++++.+++.++.++|.++
T Consensus 197 ----~~~~---------~~~ae~iK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~~~i~~~i~~~ 263 (334)
T PRK13927 197 ----LLIG---------ERTAERIKIEIGSAYPGDEVLEMEVRGRDLVTGLPKTITISSNEIREALQEPLSAIVEAVKVA 263 (334)
T ss_pred ----cCcC---------HHHHHHHHHHhhccCCCCCCceEEEeCcccCCCCCeEEEECHHHHHHHHHHHHHHHHHHHHHH
Confidence 2211 2468999999985321 122332344556677899999999999999999999999999
Q ss_pred HHHcCCCC-CC-cc-EEEEecCCCCcHHHHHHHHHhcCCCCCCCCChhHHHHhHHHHHcchh
Q psy740 268 LEKSKLAL-SD-IH-SVEIVGGSSRIPAIKGLIEKIFQKTPSTTLNQDEAVARGCALQCAML 326 (763)
Q Consensus 268 l~~a~~~~-~~-i~-~V~lvGGssriP~v~~~l~~~fg~~~~~~~n~deaVa~GAa~~aa~l 326 (763)
|+.++... .+ ++ .|+|+||+|++|.|++.|++.|+.++....||+++||+|||+++..+
T Consensus 264 l~~~~~~~~~~~~~~~IvL~GG~s~ipgl~~~l~~~~~~~v~~~~~P~~ava~Ga~~~~~~~ 325 (334)
T PRK13927 264 LEQTPPELAADIVDRGIVLTGGGALLRGLDKLLSEETGLPVHVAEDPLTCVARGTGKALENI 325 (334)
T ss_pred HHHCCchhhhhhhcCCEEEECchhhhhHHHHHHHHHHCCCcEecCCHHHHHHHHHHHHHhhH
Confidence 99986442 23 34 59999999999999999999999888888999999999999998653
No 24
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=99.94 E-value=1.4e-25 Score=243.22 Aligned_cols=260 Identities=20% Similarity=0.261 Sum_probs=184.4
Q ss_pred eEEEEcCccceEEEEEECCceeEEcCCCCCccccEEEEeeCC-----c--eEEcHHHHHhHhhccCchHHHhhhhhCCCC
Q psy740 6 VIGIDFGNESCFIAAARAGGIETIANDYSLRATPSCVAFSDR-----N--RILGVAAKNQTVTNMKNTIHGFKRLIGREF 78 (763)
Q Consensus 6 viGID~GTt~s~va~~~~g~~~iv~n~~~~r~~PS~V~~~~~-----~--~~~G~~A~~~~~~~p~~~~~~~KrllG~~~ 78 (763)
-|||||||+||+|++...| . ++ ..||+|+|..+ + ..+|+.|+.+..+.|.+.. +++-|
T Consensus 4 ~~giDlGt~~s~i~~~~~~-~-~~-------~~psvv~~~~~~~~~~~~~~~vG~~A~~~~~~~~~~~~--~~~pi---- 68 (333)
T TIGR00904 4 DIGIDLGTANTLVYVKGRG-I-VL-------NEPSVVAIRTDRDAKTKSILAVGHEAKEMLGKTPGNIV--AIRPM---- 68 (333)
T ss_pred eeEEecCcceEEEEECCCC-E-EE-------ecCCEEEEecCCCCCCCeEEEEhHHHHHhhhcCCCCEE--EEecC----
Confidence 4999999999999885443 2 22 37999999843 3 5699999876655554432 11111
Q ss_pred CChHHHhhhhcCCceeeeCCCCCeEEEEEecCCceeeCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEeecccCCHHHHHH
Q psy740 79 KDPHVQDELKFLPYNVSENPDGSIGIKVKYLNEDRVFTPEQITAMLLTKLRETSEIALQCNISDCVLSVPSFYTNAERKA 158 (763)
Q Consensus 79 ~d~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~peev~a~~L~~lk~~ae~~~~~~v~~~VITVPa~f~~~qR~a 158 (763)
.+| ..... +.+..+++++........+..-..+|||||++|+..||++
T Consensus 69 -------------------~~G------------~i~d~-~~~~~~~~~~l~~~~~~~~~~~~~~vitvP~~~~~~~r~~ 116 (333)
T TIGR00904 69 -------------------KDG------------VIADF-EVTEKMIKYFIKQVHSRKSFFKPRIVICVPSGITPVERRA 116 (333)
T ss_pred -------------------CCC------------EEEcH-HHHHHHHHHHHHHHhcccccCCCcEEEEeCCCCCHHHHHH
Confidence 111 11111 2334445555444332222222379999999999999999
Q ss_pred HHHHHh-------------------------------------------Hh-----hhcCCCCCchhHHHHHHHHHHHHH
Q psy740 159 LLDAAK-------------------------------------------II-----ASAANPYLGGRNIDYKLAKHFSQE 190 (763)
Q Consensus 159 l~~Aa~-------------------------------------------vl-----~~~~d~~lGG~d~D~~l~~~~~~~ 190 (763)
+.+|++ ++ ...++..+||++||+.|++++..+
T Consensus 117 ~~~~~~~ag~~~~~li~ep~aaa~~~g~~~~~~~~~lVvDiG~gttdvs~v~~~~~~~~~~~~lGG~did~~l~~~l~~~ 196 (333)
T TIGR00904 117 VKESALSAGAREVYLIEEPMAAAIGAGLPVEEPTGSMVVDIGGGTTEVAVISLGGIVVSRSIRVGGDEFDEAIINYIRRT 196 (333)
T ss_pred HHHHHHHcCCCeEEEecCHHHHHHhcCCcccCCceEEEEEcCCCeEEEEEEEeCCEEecCCccchHHHHHHHHHHHHHHH
Confidence 999999 11 123456799999999999999876
Q ss_pred HHhhcCCCCCCCHHHHHHHHHHHHHHHHhccCCCce----eeEEeec--cccCcccEEEeeHHHHHHHhHHHHHHHHHHH
Q psy740 191 FKQKYNIEPESNPRAFLRLLTEVEKLKKQMSANSTK----LPFGIEC--FMNDIDVKGEMCRSEMEELCKDVFENVEKTL 264 (763)
Q Consensus 191 ~~~~~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~~----~~~~ie~--l~~~~d~~~~itr~~fe~l~~~l~~~i~~~i 264 (763)
|. .... +..||++|+.|+..... ..+.+.. ...+.+....|+|++|.+++.+.+.++...|
T Consensus 197 ~~----~~~~---------~~~ae~lK~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~~~i~~~i 263 (333)
T TIGR00904 197 YN----LLIG---------EQTAERIKIEIGSAYPLNDEPRKMEVRGRDLVTGLPRTIEITSVEVREALQEPVNQIVEAV 263 (333)
T ss_pred hc----ccCC---------HHHHHHHHHHHhccccccccccceeecCccccCCCCeEEEECHHHHHHHHHHHHHHHHHHH
Confidence 63 2111 35799999999863211 1222211 1234455678999999999999999999999
Q ss_pred HHHHHHcCCCC-CCc-c-EEEEecCCCCcHHHHHHHHHhcCCCCCCCCChhHHHHhHHHHHcch
Q psy740 265 KDCLEKSKLAL-SDI-H-SVEIVGGSSRIPAIKGLIEKIFQKTPSTTLNQDEAVARGCALQCAM 325 (763)
Q Consensus 265 ~~~l~~a~~~~-~~i-~-~V~lvGGssriP~v~~~l~~~fg~~~~~~~n~deaVa~GAa~~aa~ 325 (763)
.++|+.++... .++ + .|+|+||+|++|.+++.|++.||.++....||+++||.|||+++..
T Consensus 264 ~~~l~~~~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~~~~~~v~~~~~P~~~va~Ga~~~~~~ 327 (333)
T TIGR00904 264 KRTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSKETGLPVIVADDPLLCVAKGTGKALED 327 (333)
T ss_pred HHHHHhCCchhhhhhccCCEEEECcccchhhHHHHHHHHHCCCceecCChHHHHHHHHHHHHhC
Confidence 99999987542 344 3 7999999999999999999999999999999999999999998654
No 25
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=99.94 E-value=4.4e-25 Score=240.03 Aligned_cols=262 Identities=20% Similarity=0.249 Sum_probs=191.3
Q ss_pred ceEEEEcCccceEEEEEECCceeEEcCCCCCccccEEEEeeCC---ceEEcHHHHHhHhhccCchHHHhhhhhCCCCCCh
Q psy740 5 SVIGIDFGNESCFIAAARAGGIETIANDYSLRATPSCVAFSDR---NRILGVAAKNQTVTNMKNTIHGFKRLIGREFKDP 81 (763)
Q Consensus 5 ~viGID~GTt~s~va~~~~g~~~iv~n~~~~r~~PS~V~~~~~---~~~~G~~A~~~~~~~p~~~~~~~KrllG~~~~d~ 81 (763)
..+||||||++++|+++..+ + ++ .+||+|+|... ..++|.+|+....+.|.+.- ++
T Consensus 9 ~~vgiDlGt~~t~i~~~~~~-~-~~-------~~ps~v~~~~~~~~~~~vG~~A~~~~~~~~~~~~--~~---------- 67 (335)
T PRK13930 9 KDIGIDLGTANTLVYVKGKG-I-VL-------NEPSVVAIDTKTGKVLAVGEEAKEMLGRTPGNIE--AI---------- 67 (335)
T ss_pred cceEEEcCCCcEEEEECCCC-E-EE-------ecCCEEEEECCCCeEEEEcHHHHHhhhcCCCCeE--Ee----------
Confidence 34999999999999987333 2 22 25999999752 35799999876654443321 00
Q ss_pred HHHhhhhcCCceeeeCCCCCeEEEEEecCCceeeCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEeecccCCHHHHHHHHH
Q psy740 82 HVQDELKFLPYNVSENPDGSIGIKVKYLNEDRVFTPEQITAMLLTKLRETSEIALQCNISDCVLSVPSFYTNAERKALLD 161 (763)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~peev~a~~L~~lk~~ae~~~~~~v~~~VITVPa~f~~~qR~al~~ 161 (763)
+|+ .+| .+..-+.+..+|+++.+.+..........+|||||++|+..||+++.+
T Consensus 68 --------~pi-----~~G-------------~i~d~~~~e~ll~~~~~~~~~~~~~~~~~vvit~P~~~~~~~r~~~~~ 121 (335)
T PRK13930 68 --------RPL-----KDG-------------VIADFEATEAMLRYFIKKARGRRFFRKPRIVICVPSGITEVERRAVRE 121 (335)
T ss_pred --------ecC-----CCC-------------eEcCHHHHHHHHHHHHHHHhhcccCCCCcEEEEECCCCCHHHHHHHHH
Confidence 111 112 111224567777777766655444456789999999999999999999
Q ss_pred HHh------------------------------------------------HhhhcCCCCCchhHHHHHHHHHHHHHHHh
Q psy740 162 AAK------------------------------------------------IIASAANPYLGGRNIDYKLAKHFSQEFKQ 193 (763)
Q Consensus 162 Aa~------------------------------------------------vl~~~~d~~lGG~d~D~~l~~~~~~~~~~ 193 (763)
|++ .....+...+||++||+.|++++..+|.
T Consensus 122 ~~e~~g~~~~~lv~ep~AAa~a~g~~~~~~~~~lVvDiG~gttdvs~v~~g~~~~~~~~~lGG~~id~~l~~~l~~~~~- 200 (335)
T PRK13930 122 AAEHAGAREVYLIEEPMAAAIGAGLPVTEPVGNMVVDIGGGTTEVAVISLGGIVYSESIRVAGDEMDEAIVQYVRRKYN- 200 (335)
T ss_pred HHHHcCCCeEEecccHHHHHHhcCCCcCCCCceEEEEeCCCeEEEEEEEeCCEEeecCcCchhHHHHHHHHHHHHHHhC-
Confidence 999 1112345679999999999999987653
Q ss_pred hcCCCCCCCHHHHHHHHHHHHHHHHhccCCCce---eeEEee--ccccCcccEEEeeHHHHHHHhHHHHHHHHHHHHHHH
Q psy740 194 KYNIEPESNPRAFLRLLTEVEKLKKQMSANSTK---LPFGIE--CFMNDIDVKGEMCRSEMEELCKDVFENVEKTLKDCL 268 (763)
Q Consensus 194 ~~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~~---~~~~ie--~l~~~~d~~~~itr~~fe~l~~~l~~~i~~~i~~~l 268 (763)
.+.. ...||++|+.|+..... ..+.+. .+..+.+..+.|+|++|++++.++++++.+.|.++|
T Consensus 201 ---~~~~---------~~~ae~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~~~i~~~i~~~l 268 (335)
T PRK13930 201 ---LLIG---------ERTAEEIKIEIGSAYPLDEEESMEVRGRDLVTGLPKTIEISSEEVREALAEPLQQIVEAVKSVL 268 (335)
T ss_pred ---CCCC---------HHHHHHHHHHhhcCcCCCCCceEEEECccCCCCCCeeEEECHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2221 25799999999863211 112222 233455667899999999999999999999999999
Q ss_pred HHcCCC--CCCccE-EEEecCCCCcHHHHHHHHHhcCCCCCCCCChhHHHHhHHHHHcchh
Q psy740 269 EKSKLA--LSDIHS-VEIVGGSSRIPAIKGLIEKIFQKTPSTTLNQDEAVARGCALQCAML 326 (763)
Q Consensus 269 ~~a~~~--~~~i~~-V~lvGGssriP~v~~~l~~~fg~~~~~~~n~deaVa~GAa~~aa~l 326 (763)
+.+... ...++. |+|+||+|++|.++++|.+.|+.++....||+++||+|||+.+...
T Consensus 269 ~~~~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~~~~~~~v~~~~~p~~ava~Ga~~~~~~~ 329 (335)
T PRK13930 269 EKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEETGLPVHIAEDPLTCVARGTGKALENL 329 (335)
T ss_pred HhCCHHHhhHHHhCCEEEECchhcchhHHHHHHHHHCCCceecCCHHHHHHHHHHHHHhCh
Confidence 987533 233454 9999999999999999999999888888899999999999997543
No 26
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=99.88 E-value=5.4e-22 Score=209.96 Aligned_cols=261 Identities=23% Similarity=0.291 Sum_probs=182.8
Q ss_pred ceEEEEcCccceEEEEEECCceeEEcCCCCCccccEEEEeeCC-c--eEEcHHHHHhHhhccCchHHHhhhhhCCCCCCh
Q psy740 5 SVIGIDFGNESCFIAAARAGGIETIANDYSLRATPSCVAFSDR-N--RILGVAAKNQTVTNMKNTIHGFKRLIGREFKDP 81 (763)
Q Consensus 5 ~viGID~GTt~s~va~~~~g~~~iv~n~~~~r~~PS~V~~~~~-~--~~~G~~A~~~~~~~p~~~~~~~KrllG~~~~d~ 81 (763)
.-|||||||+|+.|++-..| ++.++ ||+|+|+.+ . ..+|..|+.+..+.|.+.
T Consensus 2 ~~igIDLGT~~t~i~~~~~G---iv~~e------pSvVA~~~~~~~i~avG~~A~~m~gktp~~i--------------- 57 (326)
T PF06723_consen 2 KDIGIDLGTSNTRIYVKGKG---IVLNE------PSVVAYDKDTGKILAVGDEAKAMLGKTPDNI--------------- 57 (326)
T ss_dssp SEEEEEE-SSEEEEEETTTE---EEEEE------ES-EEEETTT--EEEESHHHHTTTTS-GTTE---------------
T ss_pred CceEEecCcccEEEEECCCC---EEEec------CcEEEEECCCCeEEEEhHHHHHHhhcCCCcc---------------
Confidence 46899999999988554333 44444 999999865 2 238999986554444331
Q ss_pred HHHhhhhcCCceeeeCCCCCeEEEEEecCCceeeCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEeecccCCHHHHHHHHH
Q psy740 82 HVQDELKFLPYNVSENPDGSIGIKVKYLNEDRVFTPEQITAMLLTKLRETSEIALQCNISDCVLSVPSFYTNAERKALLD 161 (763)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~peev~a~~L~~lk~~ae~~~~~~v~~~VITVPa~f~~~qR~al~~ 161 (763)
.+.+.-....+.--++...+|+++.+.+.......-..+||+||+..|+.+|+|+.+
T Consensus 58 -----------------------~~~~Pl~~GvI~D~~~~~~~l~~~l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~~ 114 (326)
T PF06723_consen 58 -----------------------EVVRPLKDGVIADYEAAEEMLRYFLKKALGRRSFFRPRVVICVPSGITEVERRALID 114 (326)
T ss_dssp -----------------------EEE-SEETTEESSHHHHHHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHH
T ss_pred -----------------------EEEccccCCcccCHHHHHHHHHHHHHHhccCCCCCCCeEEEEeCCCCCHHHHHHHHH
Confidence 111100122344456788888888888766433455679999999999999999999
Q ss_pred HHh-------------------------------------------HhhhcC-----CCCCchhHHHHHHHHHHHHHHHh
Q psy740 162 AAK-------------------------------------------IIASAA-----NPYLGGRNIDYKLAKHFSQEFKQ 193 (763)
Q Consensus 162 Aa~-------------------------------------------vl~~~~-----d~~lGG~d~D~~l~~~~~~~~~~ 193 (763)
|+. |++.++ ....||++||+.|.+|+.++|.
T Consensus 115 a~~~aGa~~V~li~ep~AaAiGaGl~i~~~~g~miVDIG~GtTdiavislggiv~s~si~~gG~~~DeaI~~~ir~~y~- 193 (326)
T PF06723_consen 115 AARQAGARKVYLIEEPIAAAIGAGLDIFEPRGSMIVDIGGGTTDIAVISLGGIVASRSIRIGGDDIDEAIIRYIREKYN- 193 (326)
T ss_dssp HHHHTT-SEEEEEEHHHHHHHHTT--TTSSS-EEEEEE-SS-EEEEEEETTEEEEEEEES-SHHHHHHHHHHHHHHHHS-
T ss_pred HHHHcCCCEEEEecchHHHHhcCCCCCCCCCceEEEEECCCeEEEEEEECCCEEEEEEEEecCcchhHHHHHHHHHhhC-
Confidence 998 222211 2368999999999999999985
Q ss_pred hcCCCCCCCHHHHHHHHHHHHHHHHhccCCCc---eeeEEe--eccccCcccEEEeeHHHHHHHhHHHHHHHHHHHHHHH
Q psy740 194 KYNIEPESNPRAFLRLLTEVEKLKKQMSANST---KLPFGI--ECFMNDIDVKGEMCRSEMEELCKDVFENVEKTLKDCL 268 (763)
Q Consensus 194 ~~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~---~~~~~i--e~l~~~~d~~~~itr~~fe~l~~~l~~~i~~~i~~~l 268 (763)
+.+ =...||++|+.+++-.. ...+.+ -++..+.+.++.|+-+++.+.|.+.+.++.+.|+++|
T Consensus 194 ---l~I---------g~~tAE~iK~~~g~~~~~~~~~~~~v~Grd~~tGlP~~~~i~~~ev~~ai~~~~~~I~~~i~~~L 261 (326)
T PF06723_consen 194 ---LLI---------GERTAEKIKIEIGSASPPEEEESMEVRGRDLITGLPKSIEITSSEVREAIEPPVDQIVEAIKEVL 261 (326)
T ss_dssp ---EE-----------HHHHHHHHHHH-BSS--HHHHEEEEEEEETTTTCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---ccc---------CHHHHHHHHHhcceeeccCCCceEEEECccccCCCcEEEEEcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 23579999999886321 123333 3567888899999999999999999999999999999
Q ss_pred HHcCCC-CCCc--cEEEEecCCCCcHHHHHHHHHhcCCCCCCCCChhHHHHhHHHHHcch
Q psy740 269 EKSKLA-LSDI--HSVEIVGGSSRIPAIKGLIEKIFQKTPSTTLNQDEAVARGCALQCAM 325 (763)
Q Consensus 269 ~~a~~~-~~~i--~~V~lvGGssriP~v~~~l~~~fg~~~~~~~n~deaVa~GAa~~aa~ 325 (763)
+..... ..|| +.|+|+||+++++.+.+.|++.+|.++...-||..|||.||......
T Consensus 262 e~~pPel~~DI~~~GI~LtGGga~l~Gl~~~i~~~~~~pV~va~~P~~~va~G~~~~l~~ 321 (326)
T PF06723_consen 262 EKTPPELAADILENGIVLTGGGALLRGLDEYISEETGVPVRVADDPLTAVARGAGKLLEN 321 (326)
T ss_dssp HTS-HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHHSS-EEE-SSTTTHHHHHHHHTTC-
T ss_pred HhCCHHHHHHHHHCCEEEEChhhhhccHHHHHHHHHCCCEEEcCCHHHHHHHHHHHHHhC
Confidence 976433 2344 57999999999999999999999999999999999999999976543
No 27
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=99.80 E-value=3.6e-18 Score=173.62 Aligned_cols=264 Identities=19% Similarity=0.267 Sum_probs=198.2
Q ss_pred cceEEEEcCccceEEEEEECCceeEEcCCCCCccccEEEEeeC--C-c--eEEcHHHHHhHhhccCchHHHhhhhhCCCC
Q psy740 4 MSVIGIDFGNESCFIAAARAGGIETIANDYSLRATPSCVAFSD--R-N--RILGVAAKNQTVTNMKNTIHGFKRLIGREF 78 (763)
Q Consensus 4 ~~viGID~GTt~s~va~~~~g~~~iv~n~~~~r~~PS~V~~~~--~-~--~~~G~~A~~~~~~~p~~~~~~~KrllG~~~ 78 (763)
+..|||||||.|+.|++-..| +|+|+ ||+|++.. + . ..+|.+|+.+..+.|.|..
T Consensus 6 s~diGIDLGTanTlV~~k~kg---IVl~e------PSVVAi~~~~~~~~v~aVG~eAK~MlGrTP~ni~----------- 65 (342)
T COG1077 6 SNDIGIDLGTANTLVYVKGKG---IVLNE------PSVVAIESEGKTKVVLAVGEEAKQMLGRTPGNIV----------- 65 (342)
T ss_pred cccceeeecccceEEEEcCce---EEecC------ceEEEEeecCCCceEEEehHHHHHHhccCCCCce-----------
Confidence 357999999999999876333 66666 99999987 3 2 2389999765444443321
Q ss_pred CChHHHhhhhcCCceeeeCCCCCeEEEEEecCCceeeCHHHHHHHHHHHHHHHHHHHhc-CCCCcEEEeecccCCHHHHH
Q psy740 79 KDPHVQDELKFLPYNVSENPDGSIGIKVKYLNEDRVFTPEQITAMLLTKLRETSEIALQ-CNISDCVLSVPSFYTNAERK 157 (763)
Q Consensus 79 ~d~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~peev~a~~L~~lk~~ae~~~~-~~v~~~VITVPa~f~~~qR~ 157 (763)
.+.+..+ ..+.--++...+|+|+.+.+-...+ .....++|.||..-++.+|+
T Consensus 66 --------------aiRPmkd-------------GVIAd~~~te~ml~~fik~~~~~~~~~~~prI~i~vP~g~T~VErr 118 (342)
T COG1077 66 --------------AIRPMKD-------------GVIADFEVTELMLKYFIKKVHKNGSSFPKPRIVICVPSGITDVERR 118 (342)
T ss_pred --------------EEeecCC-------------cEeecHHHHHHHHHHHHHHhccCCCCCCCCcEEEEecCCccHHHHH
Confidence 0111222 2344556788889999888765433 34456999999999999999
Q ss_pred HHHHHHh-------------------------------------------Hhhhc-----CCCCCchhHHHHHHHHHHHH
Q psy740 158 ALLDAAK-------------------------------------------IIASA-----ANPYLGGRNIDYKLAKHFSQ 189 (763)
Q Consensus 158 al~~Aa~-------------------------------------------vl~~~-----~d~~lGG~d~D~~l~~~~~~ 189 (763)
|+++|++ |++.+ ....+||+.||+.|.+|+.+
T Consensus 119 Ai~ea~~~aGa~~V~lieEp~aAAIGaglpi~ep~G~mvvDIGgGTTevaVISlggiv~~~Sirv~GD~~De~Ii~yvr~ 198 (342)
T COG1077 119 AIKEAAESAGAREVYLIEEPMAAAIGAGLPIMEPTGSMVVDIGGGTTEVAVISLGGIVSSSSVRVGGDKMDEAIIVYVRK 198 (342)
T ss_pred HHHHHHHhccCceEEEeccHHHHHhcCCCcccCCCCCEEEEeCCCceeEEEEEecCEEEEeeEEEecchhhHHHHHHHHH
Confidence 9999999 22211 23469999999999999998
Q ss_pred HHHhhcCCCCCCCHHHHHHHHHHHHHHHHhccCCC-------ceeeEEeeccccCcccEEEeeHHHHHHHhHHHHHHHHH
Q psy740 190 EFKQKYNIEPESNPRAFLRLLTEVEKLKKQMSANS-------TKLPFGIECFMNDIDVKGEMCRSEMEELCKDVFENVEK 262 (763)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~rL~~~aek~K~~LS~~~-------~~~~~~ie~l~~~~d~~~~itr~~fe~l~~~l~~~i~~ 262 (763)
+|+ +... -+.||++|+..-... ....+.-.++..+.+-.++++-++..+.+++.+++|.+
T Consensus 199 ~~n------l~IG-------e~taE~iK~eiG~a~~~~~~~~~~~eV~Grdl~~GlPk~i~i~s~ev~eal~~~v~~Ive 265 (342)
T COG1077 199 KYN------LLIG-------ERTAEKIKIEIGSAYPEEEDEELEMEVRGRDLVTGLPKTITINSEEIAEALEEPLNGIVE 265 (342)
T ss_pred HhC------eeec-------HHHHHHHHHHhcccccccCCccceeeEEeeecccCCCeeEEEcHHHHHHHHHHHHHHHHH
Confidence 886 2222 235788888765421 12344445677788889999999999999999999999
Q ss_pred HHHHHHHHcCCC-CCC-ccE-EEEecCCCCcHHHHHHHHHhcCCCCCCCCChhHHHHhHHHHHcchhc
Q psy740 263 TLKDCLEKSKLA-LSD-IHS-VEIVGGSSRIPAIKGLIEKIFQKTPSTTLNQDEAVARGCALQCAMLS 327 (763)
Q Consensus 263 ~i~~~l~~a~~~-~~~-i~~-V~lvGGssriP~v~~~l~~~fg~~~~~~~n~deaVa~GAa~~aa~ls 327 (763)
.++.+|+...-. ..| ++. ++|+||++.+..+.+.|.+..+.++...-+|-.|||.|+.+..+.+.
T Consensus 266 air~~Le~tpPeL~~DI~ergivltGGGalLrglD~~i~~et~~pv~ia~~pL~~Va~G~G~~le~~~ 333 (342)
T COG1077 266 AIRLVLEKTPPELAADIVERGIVLTGGGALLRGLDRLLSEETGVPVIIADDPLTCVAKGTGKALEALD 333 (342)
T ss_pred HHHHHHhhCCchhcccHhhCceEEecchHHhcCchHhHHhccCCeEEECCChHHHHHhccchhhhhhH
Confidence 999999986543 233 354 99999999999999999999999999999999999999998877664
No 28
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=99.79 E-value=4.8e-19 Score=181.86 Aligned_cols=160 Identities=17% Similarity=0.279 Sum_probs=134.9
Q ss_pred eCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEeecccCCHHHHHHHHHHHh------------------------------
Q psy740 115 FTPEQITAMLLTKLRETSEIALQCNISDCVLSVPSFYTNAERKALLDAAK------------------------------ 164 (763)
Q Consensus 115 ~~peev~a~~L~~lk~~ae~~~~~~v~~~VITVPa~f~~~qR~al~~Aa~------------------------------ 164 (763)
+.--+..+++|+++++.++.+++..+.+||||||++|++.||+++.+|++
T Consensus 36 I~d~~~~~~~l~~l~~~a~~~~g~~~~~vvisVP~~~~~~~r~a~~~a~~~aGl~~~~li~ep~Aaa~~~~~~~~~vvDi 115 (239)
T TIGR02529 36 VVDFLGAVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAAAAVLQIKNGAVVDV 115 (239)
T ss_pred EEEhHHHHHHHHHHHHHHHHHhCCCcCcEEEEECCCCCcccHHHHHHHHHHcCCceEEEeehHHHHHHHhcCCCcEEEEe
Confidence 44456789999999999999999999999999999999999999999999
Q ss_pred -------------HhhhcCCCCCchhHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHhccCCCceeeEEe
Q psy740 165 -------------IIASAANPYLGGRNIDYKLAKHFSQEFKQKYNIEPESNPRAFLRLLTEVEKLKKQMSANSTKLPFGI 231 (763)
Q Consensus 165 -------------vl~~~~d~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~~~~~~i 231 (763)
.+-...+..+||++||+.|++++. ++ ..+||++|+.++.
T Consensus 116 Gggtt~i~i~~~G~i~~~~~~~~GG~~it~~Ia~~~~--------i~-----------~~~AE~~K~~~~~--------- 167 (239)
T TIGR02529 116 GGGTTGISILKKGKVIYSADEPTGGTHMSLVLAGAYG--------IS-----------FEEAEEYKRGHKD--------- 167 (239)
T ss_pred CCCcEEEEEEECCeEEEEEeeecchHHHHHHHHHHhC--------CC-----------HHHHHHHHHhcCC---------
Confidence 111123556999999998875432 22 2689999986541
Q ss_pred eccccCcccEEEeeHHHHHHHhHHHHHHHHHHHHHHHHHcCCCCCCccEEEEecCCCCcHHHHHHHHHhcCCCCCCCCCh
Q psy740 232 ECFMNDIDVKGEMCRSEMEELCKDVFENVEKTLKDCLEKSKLALSDIHSVEIVGGSSRIPAIKGLIEKIFQKTPSTTLNQ 311 (763)
Q Consensus 232 e~l~~~~d~~~~itr~~fe~l~~~l~~~i~~~i~~~l~~a~~~~~~i~~V~lvGGssriP~v~~~l~~~fg~~~~~~~n~ 311 (763)
.+++.++|.++++++...++++|+.. .++.|+|+||+|++|.+++.|++.||.++..+.||
T Consensus 168 --------------~~~~~~~i~~~~~~i~~~i~~~l~~~-----~~~~v~LtGG~a~ipgl~e~l~~~lg~~v~~~~~P 228 (239)
T TIGR02529 168 --------------EEEIFPVVKPVYQKMASIVKRHIEGQ-----GVKDLYLVGGACSFSGFADVFEKQLGLNVIKPQHP 228 (239)
T ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCEEEEECchhcchhHHHHHHHHhCCCcccCCCC
Confidence 35577899999999999999999865 35799999999999999999999999999899999
Q ss_pred hHHHHhHHHH
Q psy740 312 DEAVARGCAL 321 (763)
Q Consensus 312 deaVa~GAa~ 321 (763)
+++||.|||+
T Consensus 229 ~~~va~Gaa~ 238 (239)
T TIGR02529 229 LYVTPLGIAM 238 (239)
T ss_pred Ceehhheeec
Confidence 9999999986
No 29
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=99.78 E-value=1.3e-17 Score=174.41 Aligned_cols=159 Identities=19% Similarity=0.322 Sum_probs=136.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcEEEeecccCCHHHHHHHHHHHh---------------------------------
Q psy740 118 EQITAMLLTKLRETSEIALQCNISDCVLSVPSFYTNAERKALLDAAK--------------------------------- 164 (763)
Q Consensus 118 eev~a~~L~~lk~~ae~~~~~~v~~~VITVPa~f~~~qR~al~~Aa~--------------------------------- 164 (763)
-+.....|+++++.++.+++..+..|+++||++|+..+|+++.+|++
T Consensus 66 i~~a~~~i~~~~~~ae~~~g~~i~~v~~~vp~~~~~~~~~~~~~~~~~aGl~~~~ii~e~~A~a~~~~~~~~~vvDIGgg 145 (267)
T PRK15080 66 FIGAVTIVRRLKATLEEKLGRELTHAATAIPPGTSEGDPRAIINVVESAGLEVTHVLDEPTAAAAVLGIDNGAVVDIGGG 145 (267)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcCeEEEEeCCCCCchhHHHHHHHHHHcCCceEEEechHHHHHHHhCCCCcEEEEeCCC
Confidence 45677899999999999999889999999999999999999999988
Q ss_pred ----------HhhhcCCCCCchhHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHhccCCCceeeEEeecc
Q psy740 165 ----------IIASAANPYLGGRNIDYKLAKHFSQEFKQKYNIEPESNPRAFLRLLTEVEKLKKQMSANSTKLPFGIECF 234 (763)
Q Consensus 165 ----------vl~~~~d~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~~~~~~ie~l 234 (763)
.+-..++..+||++||+.|++++. ++ +.+||++|+.++
T Consensus 146 tt~i~v~~~g~~~~~~~~~~GG~~it~~Ia~~l~--------i~-----------~~eAE~lK~~~~------------- 193 (267)
T PRK15080 146 TTGISILKDGKVVYSADEPTGGTHMSLVLAGAYG--------IS-----------FEEAEQYKRDPK------------- 193 (267)
T ss_pred cEEEEEEECCeEEEEecccCchHHHHHHHHHHhC--------CC-----------HHHHHHHHhccC-------------
Confidence 111234668999999999997653 11 357899998653
Q ss_pred ccCcccEEEeeHHHHHHHhHHHHHHHHHHHHHHHHHcCCCCCCccEEEEecCCCCcHHHHHHHHHhcCCCCCCCCChhHH
Q psy740 235 MNDIDVKGEMCRSEMEELCKDVFENVEKTLKDCLEKSKLALSDIHSVEIVGGSSRIPAIKGLIEKIFQKTPSTTLNQDEA 314 (763)
Q Consensus 235 ~~~~d~~~~itr~~fe~l~~~l~~~i~~~i~~~l~~a~~~~~~i~~V~lvGGssriP~v~~~l~~~fg~~~~~~~n~dea 314 (763)
+++++.++++++++++.+.+++.|+.. +++.|+|+||+||+|.+++.+++.||.++....||+.+
T Consensus 194 ----------~~~~~~~ii~~~~~~i~~~i~~~l~~~-----~~~~IvLtGG~s~lpgl~e~l~~~lg~~v~~~~~P~~~ 258 (267)
T PRK15080 194 ----------HHKEIFPVVKPVVEKMASIVARHIEGQ-----DVEDIYLVGGTCCLPGFEEVFEKQTGLPVHKPQHPLFV 258 (267)
T ss_pred ----------CHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCCEEEEECCcccchhHHHHHHHHhCCCcccCCCchHH
Confidence 257789999999999999999999864 57899999999999999999999999998889999999
Q ss_pred HHhHHHHHc
Q psy740 315 VARGCALQC 323 (763)
Q Consensus 315 Va~GAa~~a 323 (763)
+|.|||++|
T Consensus 259 ~a~Gaa~~~ 267 (267)
T PRK15080 259 TPLGIALSC 267 (267)
T ss_pred HHHHHHhhC
Confidence 999999986
No 30
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=99.49 E-value=7.4e-13 Score=145.95 Aligned_cols=130 Identities=22% Similarity=0.319 Sum_probs=102.0
Q ss_pred CCCCchhHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHhccCCC-----ceeeEEeeccccCcccEEEee
Q psy740 171 NPYLGGRNIDYKLAKHFSQEFKQKYNIEPESNPRAFLRLLTEVEKLKKQMSANS-----TKLPFGIECFMNDIDVKGEMC 245 (763)
Q Consensus 171 d~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~rL~~~aek~K~~LS~~~-----~~~~~~ie~l~~~~d~~~~it 245 (763)
...+||++||+.|+..+. ..+.+||++|+.++... ....+.+..+. .+....|+
T Consensus 223 ~i~~GG~~it~~i~~~l~-------------------~~~~~AE~lK~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~is 281 (371)
T TIGR01174 223 VIPIGGNHITKDIAKALR-------------------TPLEEAERIKIKYGCASIPLEGPDENIEIPSVG--ERPPRSLS 281 (371)
T ss_pred eecchHHHHHHHHHHHhC-------------------CCHHHHHHHHHHeeEecccCCCCCCEEEeccCC--CCCCeEEc
Confidence 456899999998876432 12568999999998631 12345555442 45668999
Q ss_pred HHHHHHHhHHHHHHHHHHHH-HHHHHcCCCCCCccE-EEEecCCCCcHHHHHHHHHhcCCCCCC------------CCCh
Q psy740 246 RSEMEELCKDVFENVEKTLK-DCLEKSKLALSDIHS-VEIVGGSSRIPAIKGLIEKIFQKTPST------------TLNQ 311 (763)
Q Consensus 246 r~~fe~l~~~l~~~i~~~i~-~~l~~a~~~~~~i~~-V~lvGGssriP~v~~~l~~~fg~~~~~------------~~n~ 311 (763)
|++|++++.+.++++...|+ ++|+.++.. .+++. |+|+||+|++|.|++.+++.||.++.. --+|
T Consensus 282 ~~~l~~ii~~~~~ei~~~i~~~~L~~~~~~-~~i~~gIvLtGG~S~ipgi~~~l~~~~~~~vr~~~P~~~~~~~~~~~~p 360 (371)
T TIGR01174 282 RKELAEIIEARAEEILEIVKQKELRKSGFK-EELNGGIVLTGGGAQLEGIVELAEKVFDNPVRIGLPQNIGGLTEDVNDP 360 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccCCCEEEEeChHHcccCHHHHHHHHhCCCeEEECCCccCCchhhcCCc
Confidence 99999999999999999997 999999876 67776 999999999999999999999865321 1268
Q ss_pred hHHHHhHHHHH
Q psy740 312 DEAVARGCALQ 322 (763)
Q Consensus 312 deaVa~GAa~~ 322 (763)
..++|.|.++|
T Consensus 361 ~~~~a~Gl~~~ 371 (371)
T TIGR01174 361 EYSTAVGLLLY 371 (371)
T ss_pred HHHHHHHHHhC
Confidence 88899998764
No 31
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=99.37 E-value=2.9e-11 Score=135.06 Aligned_cols=133 Identities=11% Similarity=0.144 Sum_probs=96.5
Q ss_pred CCCchhHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHhccC----C-CceeeEEeeccccCcccEEEeeH
Q psy740 172 PYLGGRNIDYKLAKHFSQEFKQKYNIEPESNPRAFLRLLTEVEKLKKQMSA----N-STKLPFGIECFMNDIDVKGEMCR 246 (763)
Q Consensus 172 ~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~rL~~~aek~K~~LS~----~-~~~~~~~ie~l~~~~d~~~~itr 246 (763)
-.+||++|++.|+..|. + ...+||++|..... . .....+.+..+.+.. ...++|
T Consensus 232 i~~GG~~it~dIa~~l~--------i-----------~~~~AE~lK~~~g~~~~~~~~~~~~i~v~~~~~~~--~~~i~~ 290 (420)
T PRK09472 232 IPYAGNVVTSDIAYAFG--------T-----------PPSDAEAIKVRHGCALGSIVGKDESVEVPSVGGRP--PRSLQR 290 (420)
T ss_pred eechHHHHHHHHHHHhC--------c-----------CHHHHHHHHHhcceeccccCCCCceeEecCCCCCC--CeEEcH
Confidence 45799999988875442 1 13689999965432 1 112345555443322 248899
Q ss_pred HHHHHHhHHHHHHHHHHHH-------HHHHHcCCCCCCccEEEEecCCCCcHHHHHHHHHhcCCCCCC------------
Q psy740 247 SEMEELCKDVFENVEKTLK-------DCLEKSKLALSDIHSVEIVGGSSRIPAIKGLIEKIFQKTPST------------ 307 (763)
Q Consensus 247 ~~fe~l~~~l~~~i~~~i~-------~~l~~a~~~~~~i~~V~lvGGssriP~v~~~l~~~fg~~~~~------------ 307 (763)
.+|.+++.+-++.+.+.|+ ..|..+++....++.|+|+||+|++|.|++++++.|+.++..
T Consensus 291 ~~l~~ii~~r~~ei~~~i~~~l~~~~~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f~~~vri~~P~~~~g~~~~ 370 (420)
T PRK09472 291 QTLAEVIEPRYTELLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFHTQVRIGAPLNITGLTDY 370 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHhCCCeEEeCCcccCCChhh
Confidence 9999999996655555555 455677887778999999999999999999999999865321
Q ss_pred CCChhHHHHhHHHHHcch
Q psy740 308 TLNQDEAVARGCALQCAM 325 (763)
Q Consensus 308 ~~n~deaVa~GAa~~aa~ 325 (763)
..+|..|+|.|.++|+..
T Consensus 371 ~~~P~~ata~Gl~~~~~~ 388 (420)
T PRK09472 371 AQEPYYSTAVGLLHYGKE 388 (420)
T ss_pred cCCcHHHHHHHHHHHhhh
Confidence 248999999999999763
No 32
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=98.98 E-value=3.9e-09 Score=116.58 Aligned_cols=193 Identities=10% Similarity=0.116 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCcEEEeecccCCHHHHHHHHHHHh----------------------------------
Q psy740 119 QITAMLLTKLRETSEIALQCNISDCVLSVPSFYTNAERKALLDAAK---------------------------------- 164 (763)
Q Consensus 119 ev~a~~L~~lk~~ae~~~~~~v~~~VITVPa~f~~~qR~al~~Aa~---------------------------------- 164 (763)
+.+..+++++....-. ....-..+||++|.+++..+|+.+.+.+-
T Consensus 75 ~~~e~~~~~~~~~~l~-~~~~~~~vvl~~p~~~~~~~r~~~~e~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~ 153 (371)
T cd00012 75 DDMEKIWDHLFFNELK-VNPEEHPVLLTEPPLNPKSNREKTTEIMFETFNVPALYVAIQAVLSLYASGRTTGLVVDSGDG 153 (371)
T ss_pred HHHHHHHHHHHHHhcC-CCCCCCceEEecCCCCCHHHHHHHHHHhhccCCCCEEEEechHHHHHHhcCCCeEEEEECCCC
Confidence 3445666665543211 11234579999999999999998887655
Q ss_pred ------------HhhhcCCCCCchhHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHhccCCCceee----
Q psy740 165 ------------IIASAANPYLGGRNIDYKLAKHFSQEFKQKYNIEPESNPRAFLRLLTEVEKLKKQMSANSTKLP---- 228 (763)
Q Consensus 165 ------------vl~~~~d~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~~~~---- 228 (763)
+........+||+++|+.|.+++..+.. ..+. ..-...++.+|+.++.-.....
T Consensus 154 ~t~i~pv~~G~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~---~~~~-------~~~~~~~~~iKe~~~~v~~~~~~~~~ 223 (371)
T cd00012 154 VTHVVPVYDGYVLPHAIKRLDLAGRDLTRYLKELLRERGY---ELNS-------SDEREIVRDIKEKLCYVALDIEEEQD 223 (371)
T ss_pred eeEEEEEECCEEchhhheeccccHHHHHHHHHHHHHhcCC---Cccc-------hhHHHHHHHHHHhheeecCCHHHHHH
Confidence 2222234579999999999998875432 0111 1123456777777654211000
Q ss_pred ---E-----Eee-ccccCcccEEEeeHHHHHHHhHHHHH---------HHHHHHHHHHHHcCCC--CCCccEEEEecCCC
Q psy740 229 ---F-----GIE-CFMNDIDVKGEMCRSEMEELCKDVFE---------NVEKTLKDCLEKSKLA--LSDIHSVEIVGGSS 288 (763)
Q Consensus 229 ---~-----~ie-~l~~~~d~~~~itr~~fe~l~~~l~~---------~i~~~i~~~l~~a~~~--~~~i~~V~lvGGss 288 (763)
. ... .+-++ ..+.++.+.| .+++-||+ .+.+.|.++|..+... ..-++.|+|+||+|
T Consensus 224 ~~~~~~~~~~~~~~lpd~--~~i~~~~er~-~~~E~lF~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l~~~Ivl~GG~s 300 (371)
T cd00012 224 KSAKETSLLEKTYELPDG--RTIKVGNERF-RAPEILFNPSLIGSEQVGISEAIYSSINKCDIDLRKDLYSNIVLSGGST 300 (371)
T ss_pred hhhccCCccceeEECCCC--eEEEEChHHh-hChHhcCChhhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCEEEeCCcc
Confidence 0 000 01111 2456665554 33333443 6788888888876433 23357899999999
Q ss_pred CcHHHHHHHHHhcCC----------CCCCCCChhHHHHhHHHHHcch
Q psy740 289 RIPAIKGLIEKIFQK----------TPSTTLNQDEAVARGCALQCAM 325 (763)
Q Consensus 289 riP~v~~~l~~~fg~----------~~~~~~n~deaVa~GAa~~aa~ 325 (763)
++|.+.+.|.+.++. .+....++..++-+||+++|..
T Consensus 301 ~~~gl~~rl~~el~~~~~~~~~~~~~~~~~~~~~~~aw~G~si~as~ 347 (371)
T cd00012 301 LFPGFGERLQKELLKLAPPSKDTKVKVIAPPERKYSVWLGGSILASL 347 (371)
T ss_pred CCcCHHHHHHHHHHHhCCcccceEEEEccCCCccccEEeCchhhcCc
Confidence 999999999988742 1234568899999999999864
No 33
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=98.80 E-value=2.3e-08 Score=110.61 Aligned_cols=255 Identities=14% Similarity=0.187 Sum_probs=145.7
Q ss_pred ceEEEEcCccceEEEEEECCceeEEcCCCCCccccEEEEeeCC---------ceEEcHHHHHhHhhccCchHHHhhhhhC
Q psy740 5 SVIGIDFGNESCFIAAARAGGIETIANDYSLRATPSCVAFSDR---------NRILGVAAKNQTVTNMKNTIHGFKRLIG 75 (763)
Q Consensus 5 ~viGID~GTt~s~va~~~~g~~~iv~n~~~~r~~PS~V~~~~~---------~~~~G~~A~~~~~~~p~~~~~~~KrllG 75 (763)
++|+||+||.++++++..+..+.+ .+||+|+...+ ..++|.+|.... +
T Consensus 2 ~~iviD~Gs~~~k~G~~~~~~P~~--------~~ps~v~~~~~~~~~~~~~~~~~~G~~a~~~~---------------~ 58 (373)
T smart00268 2 PAIVIDNGSGTIKAGFAGEDEPQV--------VFPSIVGRPKDGKGMVGDAKDTFVGDEAQEKR---------------G 58 (373)
T ss_pred CeEEEECCCCcEEEeeCCCCCCcE--------EccceeeEecccccccCCCcceEecchhhhcC---------------C
Confidence 479999999999999876543332 35888876533 235676653210 0
Q ss_pred CCCCChHHHhhhhcCCceeeeCCCCCeEEEEEecCCceeeCHHHHHHHHHHHHHHHHHHHhcC--CCCcEEEeecccCCH
Q psy740 76 REFKDPHVQDELKFLPYNVSENPDGSIGIKVKYLNEDRVFTPEQITAMLLTKLRETSEIALQC--NISDCVLSVPSFYTN 153 (763)
Q Consensus 76 ~~~~d~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~peev~a~~L~~lk~~ae~~~~~--~v~~~VITVPa~f~~ 153 (763)
.. .-.+|+ .+| .+.--+.+..+++++... .++. .-..++||+|...+.
T Consensus 59 ~~---------~~~~P~-----~~G-------------~i~d~~~~e~i~~~~~~~---~l~~~~~~~~vll~~p~~~~~ 108 (373)
T smart00268 59 GL---------ELKYPI-----EHG-------------IVENWDDMEKIWDYTFFN---ELRVEPEEHPVLLTEPPMNPK 108 (373)
T ss_pred Cc---------eecCCC-----cCC-------------EEeCHHHHHHHHHHHHhh---hcCCCCccCeeEEecCCCCCH
Confidence 00 001121 122 222344556677776654 2322 234699999999999
Q ss_pred HHHHHHHHHHh----------------------------------------------HhhhcCCCCCchhHHHHHHHHHH
Q psy740 154 AERKALLDAAK----------------------------------------------IIASAANPYLGGRNIDYKLAKHF 187 (763)
Q Consensus 154 ~qR~al~~Aa~----------------------------------------------vl~~~~d~~lGG~d~D~~l~~~~ 187 (763)
.+|+.+.+.+- +........+||+++|+.|.+++
T Consensus 109 ~~r~~~~e~lfE~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~v~pv~~G~~~~~~~~~~~~GG~~l~~~l~~~l 188 (373)
T smart00268 109 SNREKILEIMFETFNFPALYIAIQAVLSLYASGRTTGLVIDSGDGVTHVVPVVDGYVLPHAIKRIDIAGRDLTDYLKELL 188 (373)
T ss_pred HHHHHHHHHhhccCCCCeEEEeccHHHHHHhCCCCEEEEEecCCCcceEEEEECCEEchhhheeccCcHHHHHHHHHHHH
Confidence 99999988875 22222234799999999999888
Q ss_pred HHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHhccCCCcee--------------eEEee-ccccCcccEEEeeHHHHHHH
Q psy740 188 SQEFKQKYNIEPESNPRAFLRLLTEVEKLKKQMSANSTKL--------------PFGIE-CFMNDIDVKGEMCRSEMEEL 252 (763)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~~~--------------~~~ie-~l~~~~d~~~~itr~~fe~l 252 (763)
...-. ++ +. ..-...++.+|+.++.-.... ..... .+-++. .+.+..+.| .+
T Consensus 189 ~~~~~-~~--~~-------~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~lpdg~--~~~~~~er~-~~ 255 (373)
T smart00268 189 SERGY-QF--NS-------SAEFEIVREIKEKLCYVAEDFEKEMKKARESSESSKLEKTYELPDGN--TIKVGNERF-RI 255 (373)
T ss_pred HhcCC-CC--Cc-------HHHHHHHHHhhhheeeecCChHHHHHHhhhcccccccceeEECCCCC--EEEEChHHe-eC
Confidence 76210 01 11 112234566666654311000 00000 011222 234444333 22
Q ss_pred hHHHH---------HHHHHHHHHHHHHcCCCC--CCccEEEEecCCCCcHHHHHHHHHhcCC------C--CCCCCChhH
Q psy740 253 CKDVF---------ENVEKTLKDCLEKSKLAL--SDIHSVEIVGGSSRIPAIKGLIEKIFQK------T--PSTTLNQDE 313 (763)
Q Consensus 253 ~~~l~---------~~i~~~i~~~l~~a~~~~--~~i~~V~lvGGssriP~v~~~l~~~fg~------~--~~~~~n~de 313 (763)
++.+| ..+.+.|.++|..+.... .=.+.|+|+||+|++|.+.+.|.+.+.. + +....++..
T Consensus 256 ~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvltGG~s~i~Gl~~RL~~el~~~~p~~~~v~v~~~~~~~~ 335 (373)
T smart00268 256 PEILFKPELIGLEQKGIHELVYESIQKCDIDVRKDLYENIVLSGGSTLIPGFGERLEKELKQLAPKKLKVKVIAPPERKY 335 (373)
T ss_pred chhcCCchhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCeEeecccccCcCHHHHHHHHHHHhCCCCceeEEecCCCCcc
Confidence 33333 367788888887664331 1136799999999999999999887721 1 223445667
Q ss_pred HHHhHHHHHcch
Q psy740 314 AVARGCALQCAM 325 (763)
Q Consensus 314 aVa~GAa~~aa~ 325 (763)
++=+||+++|..
T Consensus 336 ~~W~G~silas~ 347 (373)
T smart00268 336 SVWLGGSILASL 347 (373)
T ss_pred ceEeCcccccCc
Confidence 777888877754
No 34
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=98.68 E-value=1.3e-06 Score=95.65 Aligned_cols=163 Identities=23% Similarity=0.303 Sum_probs=124.8
Q ss_pred EEEeecccCCHHHHHHHHHHHh--------------------------------------------HhhhcCCCCCchhH
Q psy740 143 CVLSVPSFYTNAERKALLDAAK--------------------------------------------IIASAANPYLGGRN 178 (763)
Q Consensus 143 ~VITVPa~f~~~qR~al~~Aa~--------------------------------------------vl~~~~d~~lGG~d 178 (763)
.+||+|..+-.+-++++.+|.- .+-+.+--.+||++
T Consensus 158 hvit~~~~~~~Nl~k~v~r~gl~v~~i~l~plAsa~a~L~~dEkelGv~lIDiG~GTTdIai~~~G~l~~~~~ipvgG~~ 237 (418)
T COG0849 158 HVITGPKNILENLEKCVERAGLKVDNIVLEPLASALAVLTEDEKELGVALIDIGGGTTDIAIYKNGALRYTGVIPVGGDH 237 (418)
T ss_pred EEEEcchHHHHHHHHHHHHhCCCeeeEEEehhhhhhhccCcccHhcCeEEEEeCCCcEEEEEEECCEEEEEeeEeeCccH
Confidence 5788888888887877777755 22223334699999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHhccCCC-----ceeeEEeeccccCcccEEEeeHHHHHHHh
Q psy740 179 IDYKLAKHFSQEFKQKYNIEPESNPRAFLRLLTEVEKLKKQMSANS-----TKLPFGIECFMNDIDVKGEMCRSEMEELC 253 (763)
Q Consensus 179 ~D~~l~~~~~~~~~~~~~~~~~~~~~~~~rL~~~aek~K~~LS~~~-----~~~~~~ie~l~~~~d~~~~itr~~fe~l~ 253 (763)
++..|+.-|.-.| ..||++|...-... ....+.++...++. ...+||..+-+++
T Consensus 238 vT~DIa~~l~t~~-------------------~~AE~iK~~~g~a~~~~~~~~~~i~v~~vg~~~--~~~~t~~~ls~II 296 (418)
T COG0849 238 VTKDIAKGLKTPF-------------------EEAERIKIKYGSALISLADDEETIEVPSVGSDI--PRQVTRSELSEII 296 (418)
T ss_pred HHHHHHHHhCCCH-------------------HHHHHHHHHcCccccCcCCCcceEecccCCCcc--cchhhHHHHHHHH
Confidence 9999987655333 37899998875422 12345665554443 5689999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCccEEEEecCCCCcHHHHHHHHHhcCCCC--CC----------CCChhHHHHhHHHH
Q psy740 254 KDVFENVEKTLKDCLEKSKLALSDIHSVEIVGGSSRIPAIKGLIEKIFQKTP--ST----------TLNQDEAVARGCAL 321 (763)
Q Consensus 254 ~~l~~~i~~~i~~~l~~a~~~~~~i~~V~lvGGssriP~v~~~l~~~fg~~~--~~----------~~n~deaVa~GAa~ 321 (763)
+.-...+..+++..|+++++...-...|+|+||++.+|.+.+..++.|+.++ .. ..+|..+.|.|..+
T Consensus 297 ~aR~~Ei~~lV~~~l~~~g~~~~~~~gvVlTGG~a~l~Gi~elA~~if~~~vRig~P~~~~Gl~d~~~~p~fs~avGl~~ 376 (418)
T COG0849 297 EARVEEILELVKAELRKSGLPNHLPGGVVLTGGGAQLPGIVELAERIFGRPVRLGVPLNIVGLTDIARNPAFSTAVGLLL 376 (418)
T ss_pred HhhHHHHHHHHHHHHHHcCccccCCCeEEEECchhcCccHHHHHHHhcCCceEeCCCccccCchhhccCchhhhhHHHHH
Confidence 9999999999999999999986667899999999999999999999997542 11 24689999999999
Q ss_pred Hcchh
Q psy740 322 QCAML 326 (763)
Q Consensus 322 ~aa~l 326 (763)
+++..
T Consensus 377 ~~~~~ 381 (418)
T COG0849 377 YGALM 381 (418)
T ss_pred HHhhc
Confidence 88754
No 35
>PTZ00280 Actin-related protein 3; Provisional
Probab=98.65 E-value=1.3e-06 Score=97.93 Aligned_cols=239 Identities=12% Similarity=0.124 Sum_probs=136.0
Q ss_pred CCCcceEEEEcCccceEEEEEECCceeEEcCCCCCccccEEEEeeCC-------------ceEEcHHHHHhHhhccCchH
Q psy740 1 MAGMSVIGIDFGNESCFIAAARAGGIETIANDYSLRATPSCVAFSDR-------------NRILGVAAKNQTVTNMKNTI 67 (763)
Q Consensus 1 m~~~~viGID~GTt~s~va~~~~g~~~iv~n~~~~r~~PS~V~~~~~-------------~~~~G~~A~~~~~~~p~~~~ 67 (763)
|++..+|.||+||.++++++.....+.+ .+||+|+.... ..++|++|.... . .
T Consensus 1 ~~~~~~iViD~GS~~~k~G~ag~~~P~~--------~~ps~v~~~~~~~~~~~~~~~~~~~~~vG~ea~~~~----~--~ 66 (414)
T PTZ00280 1 ASTLPVVVIDNGTGYTKMGYAGNTEPTY--------IIPTLIADNSKQSRRRSKKGFEDLDFYIGDEALAAS----K--S 66 (414)
T ss_pred CCCCCeEEEECCCCceEeeeCCCCCCCE--------EecceeEEeccccccccccccccCCEEEcchhhhCc----C--C
Confidence 7778899999999999999985444332 35777665322 234554443210 0 0
Q ss_pred HHhhhhhCCCCCChHHHhhhhcCCceeeeCCCCCeEEEEEecCCceeeCHHHHHHHHHHHHHHHHHHHhc--CCCCcEEE
Q psy740 68 HGFKRLIGREFKDPHVQDELKFLPYNVSENPDGSIGIKVKYLNEDRVFTPEQITAMLLTKLRETSEIALQ--CNISDCVL 145 (763)
Q Consensus 68 ~~~KrllG~~~~d~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~peev~a~~L~~lk~~ae~~~~--~~v~~~VI 145 (763)
..-++|+ .+| .+.--+.+..++.|+... .+. ..-..++|
T Consensus 67 ------------------~~l~~Pi-----~~G-------------~I~dwd~~e~l~~~~~~~---~L~~~p~~~~vll 107 (414)
T PTZ00280 67 ------------------YTLTYPM-----KHG-------------IVEDWDLMEKFWEQCIFK---YLRCEPEEHYFIL 107 (414)
T ss_pred ------------------cEEecCc-----cCC-------------EeCCHHHHHHHHHHHHHH---hhccCCCCCceEE
Confidence 0001111 112 122233445566654322 122 22235889
Q ss_pred eecccCCHHHHHHHHHHHh-----------------Hhhh----------c-----------------------------
Q psy740 146 SVPSFYTNAERKALLDAAK-----------------IIAS----------A----------------------------- 169 (763)
Q Consensus 146 TVPa~f~~~qR~al~~Aa~-----------------vl~~----------~----------------------------- 169 (763)
|.|...+..+|+.+.+.+- ..++ +
T Consensus 108 te~~~~~~~~Re~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~~~~g~~tglVVDiG~~~T~i~PV~~G~~l~~~~ 187 (414)
T PTZ00280 108 TEPPMNPPENREYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAKELGGTLTGTVIDSGDGVTHVIPVVDGYVIGSSI 187 (414)
T ss_pred eeCCCCcHHHHHHHHHHHhhccCCCeEEEecCHHHhHhhhcccccccccCCceeEEEEECCCCceEEEEEECCEEcccce
Confidence 9999999999988877766 2221 1
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHhccCCCce----------------eeEEeec
Q psy740 170 ANPYLGGRNIDYKLAKHFSQEFKQKYNIEPESNPRAFLRLLTEVEKLKKQMSANSTK----------------LPFGIEC 233 (763)
Q Consensus 170 ~d~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~~----------------~~~~ie~ 233 (763)
.-..+||++++..|.+++.++.. .+... .....++.+|+.++--... ..+.+..
T Consensus 188 ~~~~~GG~~lt~~L~~lL~~~~~-----~~~~~-----~~~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~~~~~~d 257 (414)
T PTZ00280 188 KHIPLAGRDITNFIQQMLRERGE-----PIPAE-----DILLLAQRIKEKYCYVAPDIAKEFEKYDSDPKNHFKKYTAVN 257 (414)
T ss_pred EEecCcHHHHHHHHHHHHHHcCC-----CCCcH-----HHHHHHHHHHHhcCcccCcHHHHHHHhhcCcccccceEECCC
Confidence 01258999999999998865321 12111 1123466777776531100 0112111
Q ss_pred cccCcccEEEeeHHHHH---HHhHHHH------HHHHHHHHHHHHHcCCC--CCCccEEEEecCCCCcHHHHHHHHHhcC
Q psy740 234 FMNDIDVKGEMCRSEME---ELCKDVF------ENVEKTLKDCLEKSKLA--LSDIHSVEIVGGSSRIPAIKGLIEKIFQ 302 (763)
Q Consensus 234 l~~~~d~~~~itr~~fe---~l~~~l~------~~i~~~i~~~l~~a~~~--~~~i~~V~lvGGssriP~v~~~l~~~fg 302 (763)
...+....+.|..+.|. -++.|-+ ..+.++|.++|..+... ..=.+.|+|+||+|.+|.+.+.|.+.+.
T Consensus 258 ~~~g~~~~i~l~~erf~~~E~LF~P~~~~~~~~~gl~e~i~~sI~~~~~d~r~~L~~nIvL~GG~s~~~Gf~eRL~~El~ 337 (414)
T PTZ00280 258 SVTKKPYTVDVGYERFLGPEMFFHPEIFSSEWTTPLPEVVDDAIQSCPIDCRRPLYKNIVLSGGSTMFKGFDKRLQRDVR 337 (414)
T ss_pred CCCCCccEEEechHHhcCcccccChhhcCCccCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCcccCcCHHHHHHHHHH
Confidence 12233456788887774 2333321 14567777888766433 1224789999999999999999998874
No 36
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=98.54 E-value=6.3e-06 Score=89.65 Aligned_cols=76 Identities=14% Similarity=0.214 Sum_probs=63.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHcCCCCCCccEEEEecCCCCcHHHHHHHHHhcCCCCCCCCChhHHHHhHHHHHcch
Q psy740 246 RSEMEELCKDVFENVEKTLKDCLEKSKLALSDIHSVEIVGGSSRIPAIKGLIEKIFQKTPSTTLNQDEAVARGCALQCAM 325 (763)
Q Consensus 246 r~~fe~l~~~l~~~i~~~i~~~l~~a~~~~~~i~~V~lvGGssriP~v~~~l~~~fg~~~~~~~n~deaVa~GAa~~aa~ 325 (763)
++++.++++.+++++...|+..+.. ..+++.|+|+||++++ +++.|++.|+.- ...-||..|.|+|...+|..
T Consensus 264 ~~~~~~~~~~~~~~i~~~i~~~~~~----~~~~d~IiL~GGGA~l--l~~~lk~~f~~~-~~~~~p~~ANa~G~~~~g~~ 336 (344)
T PRK13917 264 KDEFYKEQDSVIDEVMSGFEIAVGN----INSFDRVIVTGGGANI--FFDSLSHWYSDV-EKADESQFANVRGYYKYGEL 336 (344)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc----cCCCCEEEEECCcHHH--HHHHHHHHcCCe-EEcCChHHHHHHHHHHHHHH
Confidence 4668889999999999999888853 3478999999999987 889999999853 55679999999999999876
Q ss_pred hcC
Q psy740 326 LSP 328 (763)
Q Consensus 326 ls~ 328 (763)
+.+
T Consensus 337 ~~~ 339 (344)
T PRK13917 337 LKN 339 (344)
T ss_pred Hhc
Confidence 543
No 37
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=98.38 E-value=2.5e-06 Score=95.00 Aligned_cols=266 Identities=15% Similarity=0.178 Sum_probs=146.5
Q ss_pred cceEEEEcCccceEEEEEECCceeEEcCCCCCccccEEEEeeCC-----ceEEcHHHHHhHhhccCchHHHhhhhhCCCC
Q psy740 4 MSVIGIDFGNESCFIAAARAGGIETIANDYSLRATPSCVAFSDR-----NRILGVAAKNQTVTNMKNTIHGFKRLIGREF 78 (763)
Q Consensus 4 ~~viGID~GTt~s~va~~~~g~~~iv~n~~~~r~~PS~V~~~~~-----~~~~G~~A~~~~~~~p~~~~~~~KrllG~~~ 78 (763)
..+|-||+|+.++++++..+..+. ..+||+++.... ..++|..+... .+... +
T Consensus 4 ~~~vViD~Gs~~~k~G~age~~P~--------~v~ps~~~~~~~~~~~~~~~~g~~~~~~---~~~~~---~-------- 61 (393)
T PF00022_consen 4 NKPVVIDNGSSTIKAGFAGEDLPR--------VVIPSVVGRPRDKNSSNDYYVGDEALSP---RSNLE---L-------- 61 (393)
T ss_dssp SSEEEEEECSSEEEEEETTSSS-S--------EEEESEEEEESSSSSSSSCEETHHHHHT---GTGEE---E--------
T ss_pred CCEEEEECCCceEEEEECCCCCCC--------CcCCCccccccccccceeEEeecccccc---hhhee---e--------
Confidence 467899999999999997443332 246888776543 24677663321 00000 0
Q ss_pred CChHHHhhhhcCCceeeeCCCCCeEEEEEecCCceeeCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEeecccCCHHHHHH
Q psy740 79 KDPHVQDELKFLPYNVSENPDGSIGIKVKYLNEDRVFTPEQITAMLLTKLRETSEIALQCNISDCVLSVPSFYTNAERKA 158 (763)
Q Consensus 79 ~d~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~peev~a~~L~~lk~~ae~~~~~~v~~~VITVPa~f~~~qR~a 158 (763)
+.|+ ....+.--+....+++++.... -.....-..++++.|.+++..+|+.
T Consensus 62 ----------~~p~------------------~~g~i~~~~~~e~i~~~~~~~~-l~~~~~~~~vll~~~~~~~~~~r~~ 112 (393)
T PF00022_consen 62 ----------RSPI------------------ENGVIVDWDALEEIWDYIFSNL-LKVDPSDHPVLLTEPPFNPRSQREK 112 (393)
T ss_dssp ----------EESE------------------ETTEESSHHHHHHHHHHHHHTT-T-SSGGGSEEEEEESTT--HHHHHH
T ss_pred ----------eeec------------------cccccccccccccccccccccc-cccccccceeeeeccccCCchhhhh
Confidence 0010 0112222344555666665442 1111233469999999999999998
Q ss_pred HHHHHh----------------------------------------------HhhhcCCCCCchhHHHHHHHHHHHHHHH
Q psy740 159 LLDAAK----------------------------------------------IIASAANPYLGGRNIDYKLAKHFSQEFK 192 (763)
Q Consensus 159 l~~Aa~----------------------------------------------vl~~~~d~~lGG~d~D~~l~~~~~~~~~ 192 (763)
+.+.+- +........+||++++..|.+.+.++--
T Consensus 113 l~e~lfE~~~~~~v~~~~~~~~a~~~~g~~tglVVD~G~~~t~v~pV~dG~~~~~~~~~~~~GG~~lt~~l~~lL~~~~~ 192 (393)
T PF00022_consen 113 LAEILFEKFGVPSVYFIPSPLLALYASGRTTGLVVDIGYSSTSVVPVVDGYVLPHSIKRSPIGGDDLTEYLKELLKERNI 192 (393)
T ss_dssp HHHHHHHTS--SEEEEEEHHHHHHHHTTBSSEEEEEESSS-EEEEEEETTEE-GGGBEEES-SHHHHHHHHHHHHHHT-S
T ss_pred hhhhhhcccccceeeeeecccccccccccccccccccceeeeeeeeeeeccccccccccccccHHHHHHHHHHHHHhhcc
Confidence 877766 2222334569999999999998887411
Q ss_pred h---hcCCCCC----CCHHHHHHHHHHHHHHHHhccCC--------------CceeeEEeeccccCcccEEEeeHHHHHH
Q psy740 193 Q---KYNIEPE----SNPRAFLRLLTEVEKLKKQMSAN--------------STKLPFGIECFMNDIDVKGEMCRSEMEE 251 (763)
Q Consensus 193 ~---~~~~~~~----~~~~~~~rL~~~aek~K~~LS~~--------------~~~~~~~ie~l~~~~d~~~~itr~~fe~ 251 (763)
. .+..... ...-....-...++.+|+.++.- .....+.+ -++. .+.+..+.| .
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~l---Pdg~--~i~~~~er~-~ 266 (393)
T PF00022_consen 193 QINPSYLIKSKSPVEGESYNNSDDEEIVEEIKEECCYVSEDPDEEQEEQASENPEKSYEL---PDGQ--TIILGKERF-R 266 (393)
T ss_dssp S--GCCCCCCHCCC-TCHHSSHHHHHHHHHHHHHHHSGGSSHHHHHHHHHCSTTTEEEE----TTSS--EEEESTHHH-H
T ss_pred ccccccccccccccccccccchhhhccchhccchhhhcccccccccccccccccceeccc---cccc--ccccccccc-c
Confidence 0 0000000 00111111222334445443221 10112221 1232 556666666 3
Q ss_pred HhHHHHH----------------HHHHHHHHHHHHcCCCCCC--ccEEEEecCCCCcHHHHHHHHHhcCC--------CC
Q psy740 252 LCKDVFE----------------NVEKTLKDCLEKSKLALSD--IHSVEIVGGSSRIPAIKGLIEKIFQK--------TP 305 (763)
Q Consensus 252 l~~~l~~----------------~i~~~i~~~l~~a~~~~~~--i~~V~lvGGssriP~v~~~l~~~fg~--------~~ 305 (763)
+++.||. .+.++|.+++..+...... ...|+|+||+|++|.+.+.|...+.. .+
T Consensus 267 ~~E~LF~p~~~~~~~~~~~~~~~gL~~~I~~si~~~~~d~r~~l~~nIvl~GG~S~i~G~~eRL~~eL~~~~~~~~~~~v 346 (393)
T PF00022_consen 267 IPEILFNPSLIGIDSASEPSEFMGLPELILDSISKCPIDLRKELLSNIVLTGGSSLIPGFKERLQQELRSLLPSSTKVKV 346 (393)
T ss_dssp HHHTTTSGGGGTSSSTS---SSSCHHHHHHHHHHTSTTTTHHHHHTTEEEESGGGGSTTHHHHHHHHHHHHSGTTSTEEE
T ss_pred ccccccccccccccccccccccchhhhhhhhhhhccccccccccccceEEecccccccchHHHHHHHhhhhhhcccccee
Confidence 3343432 4778888888876543211 47899999999999999999887621 12
Q ss_pred CCCC-ChhHHHHhHHHHHcchh
Q psy740 306 STTL-NQDEAVARGCALQCAML 326 (763)
Q Consensus 306 ~~~~-n~deaVa~GAa~~aa~l 326 (763)
.... ++..++=.||+++|..-
T Consensus 347 ~~~~~~~~~~aW~Ggsilasl~ 368 (393)
T PF00022_consen 347 IAPPSDRQFAAWIGGSILASLS 368 (393)
T ss_dssp E--T-TTTSHHHHHHHHHHTSG
T ss_pred ccCchhhhhcccccceeeeccc
Confidence 3333 89999999999998643
No 38
>PTZ00281 actin; Provisional
Probab=98.19 E-value=8.6e-06 Score=89.94 Aligned_cols=173 Identities=13% Similarity=0.165 Sum_probs=102.2
Q ss_pred CcEEEeecccCCHHHHHHHHHHHh----------------------------------------------HhhhcCCCCC
Q psy740 141 SDCVLSVPSFYTNAERKALLDAAK----------------------------------------------IIASAANPYL 174 (763)
Q Consensus 141 ~~~VITVPa~f~~~qR~al~~Aa~----------------------------------------------vl~~~~d~~l 174 (763)
..++||-|.+....+|..+.+.+- +........+
T Consensus 102 ~pvllte~~~~~~~~re~l~e~lFE~~~vp~~~~~~~~~ls~ya~g~~tglVVDiG~~~t~v~PV~dG~~~~~~~~~~~~ 181 (376)
T PTZ00281 102 HPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDL 181 (376)
T ss_pred CeEEEecCCCCcHHHHHHHHHHHhcccCCceeEeeccHHHHHHhcCCceEEEEECCCceEEEEEEEecccchhheeeccC
Confidence 467888899988899988877655 2222223469
Q ss_pred chhHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHhccCCCcee-----------eEEeeccccCcccEEE
Q psy740 175 GGRNIDYKLAKHFSQEFKQKYNIEPESNPRAFLRLLTEVEKLKKQMSANSTKL-----------PFGIECFMNDIDVKGE 243 (763)
Q Consensus 175 GG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~~~-----------~~~ie~l~~~~d~~~~ 243 (763)
||.++++.|.+.+..+. ...... . -...++.+|+.++--+... .........|. -.++
T Consensus 182 GG~~lt~~L~~lL~~~~-----~~~~~~--~---~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~y~LPdg-~~i~ 250 (376)
T PTZ00281 182 AGRDLTDYMMKILTERG-----YSFTTT--A---EREIVRDIKEKLAYVALDFEAEMQTAASSSALEKSYELPDG-QVIT 250 (376)
T ss_pred cHHHHHHHHHHHHHhcC-----CCCCcH--H---HHHHHHHHHHhcEEecCCchHHHHhhhcCcccceeEECCCC-CEEE
Confidence 99999999998776431 111110 0 1234567777765311000 00111111111 2356
Q ss_pred eeHHHHHHHhHHHHH---------HHHHHHHHHHHHcCCCC--CCccEEEEecCCCCcHHHHHHHHHhcC----CC----
Q psy740 244 MCRSEMEELCKDVFE---------NVEKTLKDCLEKSKLAL--SDIHSVEIVGGSSRIPAIKGLIEKIFQ----KT---- 304 (763)
Q Consensus 244 itr~~fe~l~~~l~~---------~i~~~i~~~l~~a~~~~--~~i~~V~lvGGssriP~v~~~l~~~fg----~~---- 304 (763)
|..+.| .+.+.||+ -+.++|.+++..+.... .-.+.|+|+||+|.+|.+.+.|...+. ..
T Consensus 251 i~~er~-~~~E~LF~P~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~El~~~~p~~~~v~ 329 (376)
T PTZ00281 251 IGNERF-RCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIK 329 (376)
T ss_pred eeHHHe-eCcccccChhhcCCCCCCHHHHHHHHHHhCChhHHHHHHhhccccCccccCcCHHHHHHHHHHHhCCCCcceE
Confidence 666655 22233332 45677777777654331 123689999999999999999887762 11
Q ss_pred CCCCCChhHHHHhHHHHHcch
Q psy740 305 PSTTLNQDEAVARGCALQCAM 325 (763)
Q Consensus 305 ~~~~~n~deaVa~GAa~~aa~ 325 (763)
+....++..++=+||++.|+.
T Consensus 330 v~~~~~r~~~aW~Ggsilasl 350 (376)
T PTZ00281 330 IIAPPERKYSVWIGGSILASL 350 (376)
T ss_pred EecCCCCceeEEECcccccCc
Confidence 233446677888898888863
No 39
>PTZ00452 actin; Provisional
Probab=98.13 E-value=5.7e-05 Score=83.30 Aligned_cols=188 Identities=10% Similarity=0.135 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCcEEEeecccCCHHHHHHHHHHHh-----------------------------------
Q psy740 120 ITAMLLTKLRETSEIALQCNISDCVLSVPSFYTNAERKALLDAAK----------------------------------- 164 (763)
Q Consensus 120 v~a~~L~~lk~~ae~~~~~~v~~~VITVPa~f~~~qR~al~~Aa~----------------------------------- 164 (763)
.+..++.|+....- .....-..++||-|.+.+..+|..+.+.+-
T Consensus 81 ~~e~iw~~~f~~~l-~v~p~~~pvlitE~~~~~~~~Re~l~eilFE~~~vp~~~~~~~~~lslya~g~~tglVVDiG~~~ 159 (375)
T PTZ00452 81 DIEIIWHHAFYNEL-CMSPEDQPVFMTDAPMNSKFNRERMTQIMFETFNTPCLYISNEAVLSLYTSGKTIGLVVDSGEGV 159 (375)
T ss_pred HHHHHHHHHHHhhc-CCCcccCceeeecCCCCCHHHHHHHHHHHhhccCCceEEEechHHHHHHHCCCceeeeecCCCCc
Confidence 34456665532210 112233568889999999999988877665
Q ss_pred -----------HhhhcCCCCCchhHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHhccCCCce-------
Q psy740 165 -----------IIASAANPYLGGRNIDYKLAKHFSQEFKQKYNIEPESNPRAFLRLLTEVEKLKKQMSANSTK------- 226 (763)
Q Consensus 165 -----------vl~~~~d~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~~------- 226 (763)
+........+||++++..|.+.+..+ +....... . ...++.+|+.++--...
T Consensus 160 t~v~PV~dG~~l~~~~~r~~~gG~~lt~~L~~lL~~~-----~~~~~~~~-~----~~~~~~iKe~~c~v~~d~~~e~~~ 229 (375)
T PTZ00452 160 THCVPVFEGHQIPQAITKINLAGRLCTDYLTQILQEL-----GYSLTEPH-Q----RIIVKNIKERLCYTALDPQDEKRI 229 (375)
T ss_pred ceEEEEECCEEeccceEEeeccchHHHHHHHHHHHhc-----CCCCCCHH-H----HHHHHHHHHHhccccCcHHHHHHH
Confidence 11111233699999999998877542 11121110 0 12345566665531100
Q ss_pred --------eeEEeeccccCcccEEEeeHHHHHHHhHHHH---------HHHHHHHHHHHHHcCCC--CCCccEEEEecCC
Q psy740 227 --------LPFGIECFMNDIDVKGEMCRSEMEELCKDVF---------ENVEKTLKDCLEKSKLA--LSDIHSVEIVGGS 287 (763)
Q Consensus 227 --------~~~~ie~l~~~~d~~~~itr~~fe~l~~~l~---------~~i~~~i~~~l~~a~~~--~~~i~~V~lvGGs 287 (763)
..+. |-++ -.++|..+.| .+.+.|| .-+.++|.+++..+... ..=...|+|+||+
T Consensus 230 ~~~~~~~~~~y~---LPDg--~~i~l~~er~-~~~E~LF~P~~~g~~~~gi~~~i~~si~~c~~d~r~~L~~nIvL~GG~ 303 (375)
T PTZ00452 230 YKESNSQDSPYK---LPDG--NILTIKSQKF-RCSEILFQPKLIGLEVAGIHHLAYSSIKKCDLDLRQELCRNIVLSGGT 303 (375)
T ss_pred hhccCCcCceEE---CCCC--CEEEeehHHh-cCcccccChhhcCCCCCChhHHHHHHHHhCCHhHHHHhhccEEEeccc
Confidence 0111 1122 2456777777 2333332 23567777777766433 2224799999999
Q ss_pred CCcHHHHHHHHHhcC----CC----CCCCCChhHHHHhHHHHHcc
Q psy740 288 SRIPAIKGLIEKIFQ----KT----PSTTLNQDEAVARGCALQCA 324 (763)
Q Consensus 288 sriP~v~~~l~~~fg----~~----~~~~~n~deaVa~GAa~~aa 324 (763)
|.+|.+.+.|...+. .. +....+...++=+|+++.|.
T Consensus 304 Sl~~Gf~~RL~~El~~~~p~~~~v~v~~~~~r~~~aW~GgSilas 348 (375)
T PTZ00452 304 TLFPGIANRLSNELTNLVPSQLKIQVAAPPDRRFSAWIGGSIQCT 348 (375)
T ss_pred ccccCHHHHHHHHHHHhCCCCceeEEecCCCcceeEEECchhhcC
Confidence 999999999988762 11 22334555677788888875
No 40
>PTZ00004 actin-2; Provisional
Probab=98.10 E-value=2.8e-05 Score=85.96 Aligned_cols=191 Identities=9% Similarity=0.071 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHHHHHHhc--CCCCcEEEeecccCCHHHHHHHHHHHh--------------------------------
Q psy740 119 QITAMLLTKLRETSEIALQ--CNISDCVLSVPSFYTNAERKALLDAAK-------------------------------- 164 (763)
Q Consensus 119 ev~a~~L~~lk~~ae~~~~--~~v~~~VITVPa~f~~~qR~al~~Aa~-------------------------------- 164 (763)
+....++.|+.. ..++ ..-..+++|-|.+.+..+|..+.+.+-
T Consensus 81 d~~e~i~~~~~~---~~l~v~~~~~pvllte~~~~~~~~r~~~~e~lFE~~~~~~~~~~~~~~ls~ya~g~~tglVVDiG 157 (378)
T PTZ00004 81 DDMEKIWHHTFY---NELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETHNVPAMYVAIQAVLSLYASGRTTGIVLDSG 157 (378)
T ss_pred HHHHHHHHHHHH---hhcccCCccCcceeecCCCCcHHHHHHHHHHHHhhcCCceEEeeccHHHHHHhcCCceEEEEECC
Confidence 345556666432 1222 233468889999999999988777665
Q ss_pred --------------HhhhcCCCCCchhHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHhccCCCce----
Q psy740 165 --------------IIASAANPYLGGRNIDYKLAKHFSQEFKQKYNIEPESNPRAFLRLLTEVEKLKKQMSANSTK---- 226 (763)
Q Consensus 165 --------------vl~~~~d~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~~---- 226 (763)
+........+||+++++.|.+.+..+. +..... . -...++.+|+.++.-...
T Consensus 158 ~~~t~v~pV~dG~~l~~~~~~~~~GG~~lt~~L~~lL~~~~---~~~~~~----~---~~~~~~~iKe~~c~v~~d~~~~ 227 (378)
T PTZ00004 158 DGVSHTVPIYEGYSLPHAIHRLDVAGRDLTEYMMKILHERG---TTFTTT----A---EKEIVRDIKEKLCYIALDFDEE 227 (378)
T ss_pred CCcEEEEEEECCEEeecceeeecccHHHHHHHHHHHHHhcC---CCCCcH----H---HHHHHHHHhhcceeecCCHHHH
Confidence 111222346999999999999875431 111111 1 122355666665431100
Q ss_pred -------ee-EEeec-cccCcccEEEeeHHHHH---HHhHHH------HHHHHHHHHHHHHHcCCC--CCCccEEEEecC
Q psy740 227 -------LP-FGIEC-FMNDIDVKGEMCRSEME---ELCKDV------FENVEKTLKDCLEKSKLA--LSDIHSVEIVGG 286 (763)
Q Consensus 227 -------~~-~~ie~-l~~~~d~~~~itr~~fe---~l~~~l------~~~i~~~i~~~l~~a~~~--~~~i~~V~lvGG 286 (763)
.. ..... |-++. .+.|..+.|. -++.|- ..-+.++|.+++..+... ..=...|+|+||
T Consensus 228 ~~~~~~~~~~~~~~y~lPdg~--~i~l~~er~~~~E~LF~P~~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG 305 (378)
T PTZ00004 228 MGNSAGSSDKYEESYELPDGT--IITVGSERFRCPEALFQPSLIGKEEPPGIHELTFQSINKCDIDIRKDLYGNIVLSGG 305 (378)
T ss_pred HhhhhcCccccceEEECCCCC--EEEEcHHHeeCcccccChhhcCccccCChHHHHHHHHHhCChhHHHHHHhhEEeccc
Confidence 00 00111 11222 3456666552 233332 224567777777766433 122478999999
Q ss_pred CCCcHHHHHHHHHhcC----CC----CCCCCChhHHHHhHHHHHcc
Q psy740 287 SSRIPAIKGLIEKIFQ----KT----PSTTLNQDEAVARGCALQCA 324 (763)
Q Consensus 287 ssriP~v~~~l~~~fg----~~----~~~~~n~deaVa~GAa~~aa 324 (763)
+|.+|.+.+.|...+. .. +....++..++=+||++.|.
T Consensus 306 ~s~~~Gf~~RL~~EL~~~~p~~~~~~v~~~~~~~~~aW~Ggsilas 351 (378)
T PTZ00004 306 TTMYRGLPERLTKELTTLAPSTMKIKVVAPPERKYSVWIGGSILSS 351 (378)
T ss_pred hhcCcCHHHHHHHHHHHhCCCCccEEEecCCCCceeEEECcccccC
Confidence 9999999999988763 11 22344566777778888775
No 41
>PTZ00466 actin-like protein; Provisional
Probab=98.06 E-value=4.3e-05 Score=84.35 Aligned_cols=190 Identities=8% Similarity=0.091 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCcEEEeecccCCHHHHHHHHHHHh-----------------------------------
Q psy740 120 ITAMLLTKLRETSEIALQCNISDCVLSVPSFYTNAERKALLDAAK----------------------------------- 164 (763)
Q Consensus 120 v~a~~L~~lk~~ae~~~~~~v~~~VITVPa~f~~~qR~al~~Aa~----------------------------------- 164 (763)
....++.|+.+... ....-..+++|-|++.+..+|..+.+.+-
T Consensus 88 ~~e~iw~~~f~~l~--v~~~~~pvllte~~~~~~~~re~~~e~lFE~~~~p~~~~~~~~~lsl~a~g~~tglVVD~G~~~ 165 (380)
T PTZ00466 88 DMENIWIHVYNSMK--INSEEHPVLLTEAPLNPQKNKEKIAEVFFETFNVPALFISIQAILSLYSCGKTNGTVLDCGDGV 165 (380)
T ss_pred HHHHHHHHHHhhcc--cCCccCeEEEecCccccHHHHHHHHHHHhccCCCCeEEEecchHHHHHhcCCceEEEEeCCCCc
Confidence 34555555542211 11223457888898888888888777665
Q ss_pred -----------HhhhcCCCCCchhHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHhccCCCce-------
Q psy740 165 -----------IIASAANPYLGGRNIDYKLAKHFSQEFKQKYNIEPESNPRAFLRLLTEVEKLKKQMSANSTK------- 226 (763)
Q Consensus 165 -----------vl~~~~d~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~~------- 226 (763)
+........+||++++..|.+.+.+.- +..+. ..-+..++.+|+.++--...
T Consensus 166 t~v~PV~~G~~~~~~~~~~~~GG~~lt~~L~~lL~~~~---~~~~~-------~~~~~~v~~iKe~~c~v~~d~~~e~~~ 235 (380)
T PTZ00466 166 CHCVSIYEGYSITNTITRTDVAGRDITTYLGYLLRKNG---HLFNT-------SAEMEVVKNMKENCCYVSFNMNKEKNS 235 (380)
T ss_pred eEEEEEECCEEeecceeEecCchhHHHHHHHHHHHhcC---CCCCc-------HHHHHHHHHHHHhCeEecCChHHHHhh
Confidence 111122346999999999998775421 11111 11123455667665421100
Q ss_pred ---eeEEeec-cccCcccEEEeeHHHHHHHhHHHHH---------HHHHHHHHHHHHcCCC--CCCccEEEEecCCCCcH
Q psy740 227 ---LPFGIEC-FMNDIDVKGEMCRSEMEELCKDVFE---------NVEKTLKDCLEKSKLA--LSDIHSVEIVGGSSRIP 291 (763)
Q Consensus 227 ---~~~~ie~-l~~~~d~~~~itr~~fe~l~~~l~~---------~i~~~i~~~l~~a~~~--~~~i~~V~lvGGssriP 291 (763)
....... |-++ ..+.|..+.|. +.+.||+ -+.++|-+++..+... ..=...|+|+||+|.+|
T Consensus 236 ~~~~~~~~~y~LPdg--~~i~l~~er~~-~~E~LF~P~~~g~~~~gl~~~i~~sI~~c~~d~r~~L~~nIvL~GG~Sl~~ 312 (380)
T PTZ00466 236 SEKALTTLPYILPDG--SQILIGSERYR-APEVLFNPSILGLEYLGLSELIVTSITRADMDLRRTLYSHIVLSGGTTMFH 312 (380)
T ss_pred ccccccceeEECCCC--cEEEEchHHhc-CcccccCccccCCCCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCccccC
Confidence 0000111 1122 24566766662 2333332 3566777777766433 12247899999999999
Q ss_pred HHHHHHHHhcCC----C----CCCCCChhHHHHhHHHHHcc
Q psy740 292 AIKGLIEKIFQK----T----PSTTLNQDEAVARGCALQCA 324 (763)
Q Consensus 292 ~v~~~l~~~fg~----~----~~~~~n~deaVa~GAa~~aa 324 (763)
.+.+.|...+.. . +....++..++=+||+++|.
T Consensus 313 Gf~~RL~~EL~~l~p~~~~v~v~~~~~r~~~aW~GgSilas 353 (380)
T PTZ00466 313 GFGDRLLNEIRKFAPKDITIRISAPPERKFSTFIGGSILAS 353 (380)
T ss_pred CHHHHHHHHHHHhCCCCceEEEecCCCCceeEEECchhhcC
Confidence 999999887721 1 22334556677788888875
No 42
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=97.66 E-value=2.6e-05 Score=74.62 Aligned_cols=65 Identities=22% Similarity=0.290 Sum_probs=54.9
Q ss_pred HhHHHHHHHHHHHHHHHHHcCCCCCCccEEEEecCCCCcHHHHHHHHHhcCCCCCCCCChhHHHHhHHHH
Q psy740 252 LCKDVFENVEKTLKDCLEKSKLALSDIHSVEIVGGSSRIPAIKGLIEKIFQKTPSTTLNQDEAVARGCAL 321 (763)
Q Consensus 252 l~~~l~~~i~~~i~~~l~~a~~~~~~i~~V~lvGGssriP~v~~~l~~~fg~~~~~~~n~deaVa~GAa~ 321 (763)
.+.|+++++.+++.+-++..+ |..+.|+||+|.-|.+.+..++.|+..++.+..|....-+|-|+
T Consensus 206 ~v~PV~eKMAeIv~~hie~~~-----i~dl~lvGGac~~~g~e~~Fe~~l~l~v~~P~~p~y~TPLgIA~ 270 (277)
T COG4820 206 VVKPVYEKMAEIVARHIEGQG-----ITDLWLVGGACMQPGVEELFEKQLALQVHLPQHPLYMTPLGIAS 270 (277)
T ss_pred chhHHHHHHHHHHHHHhccCC-----CcceEEecccccCccHHHHHHHHhccccccCCCcceechhhhhh
Confidence 357999999999999888765 56799999999999999999999988888877777666666654
No 43
>PF07520 SrfB: Virulence factor SrfB; InterPro: IPR009216 This entry represents proteins of unknown function. It has been shown in Salmonella enterica that srfB is one of the genes activated by the global signal transduction/regulatory system SsrA/B []. This activation takes place within eukaryotic cells. The activated genes include pathogenicity island 2 (SPI-2) genes and at least 10 other genes (srfB is one of them) which are believed to be horizontally acquired, and to be involved in virulence/pathogenicity [].
Probab=97.35 E-value=0.025 Score=67.63 Aligned_cols=82 Identities=18% Similarity=0.272 Sum_probs=60.9
Q ss_pred cccEEEeeHHHHHHHhH---HHHHHHHHHHHHHHHHcCCCCCCccEEEEecCCCCcHHHHHHHHHhcCCCCC--------
Q psy740 238 IDVKGEMCRSEMEELCK---DVFENVEKTLKDCLEKSKLALSDIHSVEIVGGSSRIPAIKGLIEKIFQKTPS-------- 306 (763)
Q Consensus 238 ~d~~~~itr~~fe~l~~---~l~~~i~~~i~~~l~~a~~~~~~i~~V~lvGGssriP~v~~~l~~~fg~~~~-------- 306 (763)
.|+.+.|+...+...+- -.|..++.-+-.++... +.|-++|+|--||+|.||.+++...+.++.
T Consensus 729 ldv~l~i~~~~l~~~~~~~r~~i~~~L~~LcEvv~~Y-----~CDVLLLTGRPSrlPgvqalfr~~~pvPp~RIv~l~~Y 803 (1002)
T PF07520_consen 729 LDVPLEIDLEKLHAAFLSDRMVICKTLRALCEVVHHY-----DCDVLLLTGRPSRLPGVQALFRHLLPVPPDRIVPLHGY 803 (1002)
T ss_pred ecceEEEcHHHHHHHHHhCcccHHHHHHHHHHHHHHh-----CCCEEEEcCCccccHHHHHHHHHhCCCCcccEEecCCe
Confidence 34567888998888664 45555555555555544 468999999999999999999999864422
Q ss_pred ------------CCCChhHHHHhHHHHHcc
Q psy740 307 ------------TTLNQDEAVARGCALQCA 324 (763)
Q Consensus 307 ------------~~~n~deaVa~GAa~~aa 324 (763)
+--||-..||.||.+.+-
T Consensus 804 ~tg~WYPF~~~~rI~dPKTTaaVGAmLc~L 833 (1002)
T PF07520_consen 804 RTGNWYPFNDQGRIDDPKTTAAVGAMLCLL 833 (1002)
T ss_pred eecccccCCCCCcCCCchHHHHHHHHHHHH
Confidence 225899999999987663
No 44
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=97.27 E-value=0.00092 Score=72.89 Aligned_cols=112 Identities=20% Similarity=0.331 Sum_probs=69.9
Q ss_pred CCCCchhHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHhccCCCceeeEEeeccccCcccEEEeeHHHHH
Q psy740 171 NPYLGGRNIDYKLAKHFSQEFKQKYNIEPESNPRAFLRLLTEVEKLKKQMSANSTKLPFGIECFMNDIDVKGEMCRSEME 250 (763)
Q Consensus 171 d~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~~~~~~ie~l~~~~d~~~~itr~~fe 250 (763)
.-.+||.+|++.|++.+.-.+ .+|+..|..-+- . . +...
T Consensus 207 ~i~~G~~~l~~~i~~~~~i~~-------------------~~Ae~~k~~~~l-~----~-----------------~~~~ 245 (340)
T PF11104_consen 207 SIPIGGNDLTEAIARELGIDF-------------------EEAEELKRSGGL-P----E-----------------EYDQ 245 (340)
T ss_dssp EES-SHHHHHHHHHHHTT--H-------------------HHHHHHHHHT----------------------------HH
T ss_pred EEeeCHHHHHHHHHHhcCCCH-------------------HHHHHHHhcCCC-C----c-----------------chHH
Confidence 346999999999997654332 356666654211 0 0 2234
Q ss_pred HHhHHHHHHHHHHHHHHHH--HcCCCCCCccEEEEecCCCCcHHHHHHHHHhcCCCCC---------CCC----------
Q psy740 251 ELCKDVFENVEKTLKDCLE--KSKLALSDIHSVEIVGGSSRIPAIKGLIEKIFQKTPS---------TTL---------- 309 (763)
Q Consensus 251 ~l~~~l~~~i~~~i~~~l~--~a~~~~~~i~~V~lvGGssriP~v~~~l~~~fg~~~~---------~~~---------- 309 (763)
+.+.+.++++..-|++.|+ .+......|+.|+|+||++++|.+.+.|.+.||.++. .+.
T Consensus 246 ~~l~~~~~~l~~EI~rsl~~y~~~~~~~~i~~I~L~Ggga~l~gL~~~l~~~l~~~v~~~~p~~~~~~~~~~~~~~~~~~ 325 (340)
T PF11104_consen 246 DALRPFLEELAREIRRSLDFYQSQSGGESIERIYLSGGGARLPGLAEYLSEELGIPVEVINPFKNIKLDPKINSEYLQED 325 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH------SEEEEESGGGGSTTHHHHHHHHHTSEEEE--GGGGSB--TTS-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEECCccchhhHHHHHHHHHCCceEEcChHHhCccCcccChhhhhhh
Confidence 5566777777777777776 2223345799999999999999999999999985421 112
Q ss_pred ChhHHHHhHHHHHc
Q psy740 310 NQDEAVARGCALQC 323 (763)
Q Consensus 310 n~deaVa~GAa~~a 323 (763)
.|+.+||.|.|+..
T Consensus 326 ~~~~avA~GLAlR~ 339 (340)
T PF11104_consen 326 APQFAVALGLALRG 339 (340)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHhhcC
Confidence 26788999999863
No 45
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=97.26 E-value=0.013 Score=63.21 Aligned_cols=46 Identities=22% Similarity=0.267 Sum_probs=37.7
Q ss_pred CCccEEEEecCCCCcHHHHHHHHHhcCC-CCCCCCChhHHHHhHHHHHc
Q psy740 276 SDIHSVEIVGGSSRIPAIKGLIEKIFQK-TPSTTLNQDEAVARGCALQC 323 (763)
Q Consensus 276 ~~i~~V~lvGGssriP~v~~~l~~~fg~-~~~~~~n~deaVa~GAa~~a 323 (763)
.+++.|+|+||++. .+++.|++.|+. .+...-||..|.|+|-..++
T Consensus 272 ~~~~~Iil~GGGa~--ll~~~l~~~f~~~~i~~~~dp~~ANarG~~~~g 318 (320)
T TIGR03739 272 ESIQNIVLVGGGAF--LFKKAVKAAFPKHRIVEVDEPMFANVRGFQIAG 318 (320)
T ss_pred CcccEEEEeCCcHH--HHHHHHHHHCCCCeeEecCCcHHHHHHHHHHhh
Confidence 46899999999987 567999999976 34456799999999987665
No 46
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=96.94 E-value=0.016 Score=64.83 Aligned_cols=47 Identities=15% Similarity=0.292 Sum_probs=39.5
Q ss_pred ccEEEEecCCCCcHHHHHHHHHhcC----C----CCCCCCChhHHHHhHHHHHcc
Q psy740 278 IHSVEIVGGSSRIPAIKGLIEKIFQ----K----TPSTTLNQDEAVARGCALQCA 324 (763)
Q Consensus 278 i~~V~lvGGssriP~v~~~l~~~fg----~----~~~~~~n~deaVa~GAa~~aa 324 (763)
...|+|+||+|.+|.+...|...+. . .+....++...+=+||+++|.
T Consensus 363 ~~nivitGGts~~pg~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~~W~GaSila~ 417 (444)
T COG5277 363 YSNIVLTGGTSKIPGFAERLQKELTSLAPSIWKVSVIPPPDPSLDAWLGASILAS 417 (444)
T ss_pred hhCEEEecCccCCCCHHHHHHHHHHhhcCCCCceeeecCCchhhccccchhhhcc
Confidence 5789999999999999999988762 1 245667999999999999987
No 47
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=96.71 E-value=0.0016 Score=65.05 Aligned_cols=47 Identities=23% Similarity=0.400 Sum_probs=42.4
Q ss_pred ccEEEEecCCCCcHHHHHHHHHhcCCCCCCCCChhHHHHhHHHHHcch
Q psy740 278 IHSVEIVGGSSRIPAIKGLIEKIFQKTPSTTLNQDEAVARGCALQCAM 325 (763)
Q Consensus 278 i~~V~lvGGssriP~v~~~l~~~fg~~~~~~~n~deaVa~GAa~~aa~ 325 (763)
++.|.++||.++.|.+.+++.+.||.++...-+ .++.|.|||+.|+.
T Consensus 150 ~~~i~~~GG~~~n~~~~q~~Advl~~~V~~~~~-~e~~a~GaA~~A~~ 196 (198)
T PF02782_consen 150 IRRIRVSGGGAKNPLWMQILADVLGRPVVRPEV-EEASALGAALLAAV 196 (198)
T ss_dssp ESEEEEESGGGGSHHHHHHHHHHHTSEEEEESS-STHHHHHHHHHHHH
T ss_pred ceeeEeccccccChHHHHHHHHHhCCceEeCCC-CchHHHHHHHHHHh
Confidence 899999999999999999999999988765544 89999999999864
No 48
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=96.43 E-value=0.0089 Score=62.54 Aligned_cols=47 Identities=28% Similarity=0.311 Sum_probs=42.2
Q ss_pred cEEEEecCCCCcHHHHHHHHHhcCCCCC-CCCChhHHHHhHHHHHcch
Q psy740 279 HSVEIVGGSSRIPAIKGLIEKIFQKTPS-TTLNQDEAVARGCALQCAM 325 (763)
Q Consensus 279 ~~V~lvGGssriP~v~~~l~~~fg~~~~-~~~n~deaVa~GAa~~aa~ 325 (763)
..|+|+||.++.|.+.+.+++.+|.++. .+.+|..+.|+|||++|..
T Consensus 241 ~~v~~~GGva~N~~l~~al~~~Lg~~v~~~p~~p~~~GAlGAAL~A~~ 288 (293)
T TIGR03192 241 EGFFITGGIAKNPGVVKRIERILGIKAVDTKIDSQIAGALGAALFGYT 288 (293)
T ss_pred CCEEEECcccccHHHHHHHHHHhCCCceeCCCCccHHHHHHHHHHHHH
Confidence 4689999999999999999999998876 5778999999999999853
No 49
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=96.43 E-value=0.0072 Score=62.75 Aligned_cols=68 Identities=24% Similarity=0.340 Sum_probs=55.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHcCCCCCCcc-EEEEecCCCCcHHHHHHHHHhcCCCCCCCCChhHHHHhHHHHH
Q psy740 250 EELCKDVFENVEKTLKDCLEKSKLALSDIH-SVEIVGGSSRIPAIKGLIEKIFQKTPSTTLNQDEAVARGCALQ 322 (763)
Q Consensus 250 e~l~~~l~~~i~~~i~~~l~~a~~~~~~i~-~V~lvGGssriP~v~~~l~~~fg~~~~~~~n~deaVa~GAa~~ 322 (763)
++++..+++.+..-+.+.+...+ ++ .|+|+||.++.|.+.+.+.+.+|.++..+-++..+.|+|||+.
T Consensus 180 ~di~~~~~~~va~~i~~~~~~~~-----~~~~Vvl~GGva~n~~l~~~l~~~lg~~v~~~~~~~~~~AlGaAl~ 248 (248)
T TIGR00241 180 EDILAGVYESIAERVAEMLQRLK-----IEAPIVFTGGVSKNKGLVKALEKKLGMKVITPPEPQIVGAVGAALL 248 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcC-----CCCCEEEECccccCHHHHHHHHHHhCCcEEcCCCccHHHHHHHHhC
Confidence 45666666666666666665443 44 7999999999999999999999999888889999999999973
No 50
>PRK15027 xylulokinase; Provisional
Probab=96.36 E-value=0.0084 Score=68.74 Aligned_cols=82 Identities=15% Similarity=0.177 Sum_probs=58.9
Q ss_pred eHHHHHHHh-HHHHHHHHHHHHHHHHHcCCCCCCccEEEEecCCCCcHHHHHHHHHhcCCCCCCCCChhHHHHhHHHHHc
Q psy740 245 CRSEMEELC-KDVFENVEKTLKDCLEKSKLALSDIHSVEIVGGSSRIPAIKGLIEKIFQKTPSTTLNQDEAVARGCALQC 323 (763)
Q Consensus 245 tr~~fe~l~-~~l~~~i~~~i~~~l~~a~~~~~~i~~V~lvGGssriP~v~~~l~~~fg~~~~~~~n~deaVa~GAa~~a 323 (763)
+|.+|-..+ +.+.-.+...++ .++..+. .++.|.++||+++.+.+.+++.++||.++....+.+++.++|||+.|
T Consensus 357 ~~~~l~rAvlEgia~~~~~~~~-~l~~~g~---~~~~i~~~GGga~s~~w~Qi~Adv~g~pv~~~~~~~~~~a~GaA~lA 432 (484)
T PRK15027 357 GPNELARAVLEGVGYALADGMD-VVHACGI---KPQSVTLIGGGARSEYWRQMLADISGQQLDYRTGGDVGPALGAARLA 432 (484)
T ss_pred CHHHHHHHHHHHHHHHHHHHHH-HHHHcCC---CccEEEEeCcccCCHHHHHHHHHHhCCeEEeecCCCcchHHHHHHHH
Confidence 566654433 333333333333 3344444 37899999999999999999999999998666677778999999999
Q ss_pred chhcCCc
Q psy740 324 AMLSPAV 330 (763)
Q Consensus 324 a~ls~~~ 330 (763)
+.-.+.+
T Consensus 433 ~~~~G~~ 439 (484)
T PRK15027 433 QIAANPE 439 (484)
T ss_pred HHhcCCc
Confidence 8766543
No 51
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=96.23 E-value=0.02 Score=62.61 Aligned_cols=73 Identities=12% Similarity=0.176 Sum_probs=51.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHc--CCCCCCccEEEEecCCCCcHHHHHHHHHhcCCCCCC-------------------CC
Q psy740 251 ELCKDVFENVEKTLKDCLEKS--KLALSDIHSVEIVGGSSRIPAIKGLIEKIFQKTPST-------------------TL 309 (763)
Q Consensus 251 ~l~~~l~~~i~~~i~~~l~~a--~~~~~~i~~V~lvGGssriP~v~~~l~~~fg~~~~~-------------------~~ 309 (763)
+++++.++++..-|.+.|+-. ......++.|+|+||+++++.+.+.+.+.||.++.. ..
T Consensus 254 ~~~~~~~~~l~~eI~~~l~~~~~~~~~~~i~~I~LtGgga~~~gl~~~l~~~l~~~v~~~~P~~~~~~~~~~~~~~~~~~ 333 (348)
T TIGR01175 254 EVLRRFKGELVDEIRRSLQFFTAQSGTNSLDGLVLAGGGATLSGLDAAIYQRLGLPTEVANPFALMALDAKVDAGRLAVD 333 (348)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCcccceEEEECccccchhHHHHHHHHHCCCeEecChHHhcccCccCCHHHHHhh
Confidence 345666677777777777532 222345899999999999999999999999854221 13
Q ss_pred ChhHHHHhHHHHHc
Q psy740 310 NQDEAVARGCALQC 323 (763)
Q Consensus 310 n~deaVa~GAa~~a 323 (763)
+|..++|.|+|+++
T Consensus 334 ~~~~~~a~Glalr~ 347 (348)
T TIGR01175 334 APALMTALGLALRG 347 (348)
T ss_pred hHHHHHHhhHhhcC
Confidence 45677888888764
No 52
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.14 E-value=0.24 Score=52.05 Aligned_cols=54 Identities=15% Similarity=0.364 Sum_probs=38.7
Q ss_pred HHhHHHHHHHHHHHHHHHHH--cCCCCCCccEEEEecCCCCcHHHHHHHHHhcCCC
Q psy740 251 ELCKDVFENVEKTLKDCLEK--SKLALSDIHSVEIVGGSSRIPAIKGLIEKIFQKT 304 (763)
Q Consensus 251 ~l~~~l~~~i~~~i~~~l~~--a~~~~~~i~~V~lvGGssriP~v~~~l~~~fg~~ 304 (763)
++..++++.+..-|.|.|+- +.-...+|+.|+|.||+.++-.+.+++.+.++.+
T Consensus 259 ~vl~~f~~~l~~ei~Rslqfy~~~s~~~~id~i~LaGggA~l~gL~~~i~qrl~~~ 314 (354)
T COG4972 259 EVLRPFLGELTQEIRRSLQFYLSQSEMVDIDQILLAGGGASLEGLAAAIQQRLSIP 314 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccceeeEEEEecCCcchhhHHHHHHHHhCCC
Confidence 34455555555555555552 1224567999999999999999999999998754
No 53
>PLN02669 xylulokinase
Probab=96.11 E-value=0.013 Score=68.02 Aligned_cols=70 Identities=21% Similarity=0.262 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCccEEEEecCCCCcHHHHHHHHHhcCCCCCCCCChhHHHHhHHHHHcch
Q psy740 254 KDVFENVEKTLKDCLEKSKLALSDIHSVEIVGGSSRIPAIKGLIEKIFQKTPSTTLNQDEAVARGCALQCAM 325 (763)
Q Consensus 254 ~~l~~~i~~~i~~~l~~a~~~~~~i~~V~lvGGssriP~v~~~l~~~fg~~~~~~~n~deaVa~GAa~~aa~ 325 (763)
+-+++-+.--++..++..+.. ..++.|+++||+|+.+.+.+++.++||.++...-. .++.|+|||+.|+.
T Consensus 423 RAvlEg~a~~~r~~~~~l~~~-~~~~~i~~~GGgs~s~~w~Qi~ADVlg~pV~~~~~-~ea~alGAA~~A~~ 492 (556)
T PLN02669 423 RAIIEGQFLSMRAHAERFGMP-VPPKRIIATGGASANQSILKLIASIFGCDVYTVQR-PDSASLGAALRAAH 492 (556)
T ss_pred HHHHHHHHHHHHHHHHHHhCC-CCCcEEEEEcChhcCHHHHHHHHHHcCCCeEecCC-CCchHHHHHHHHHH
Confidence 333333333333333333322 34789999999999999999999999998765444 47889999999975
No 54
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=96.07 E-value=0.016 Score=67.41 Aligned_cols=84 Identities=20% Similarity=0.215 Sum_probs=61.3
Q ss_pred eHHHHHHHhHHHHHHHHHHHHHHHHHcCCCCCCccEEEEecCCCCcHHHHHHHHHhcCCCCCCCCChhHHHHhHHHHHcc
Q psy740 245 CRSEMEELCKDVFENVEKTLKDCLEKSKLALSDIHSVEIVGGSSRIPAIKGLIEKIFQKTPSTTLNQDEAVARGCALQCA 324 (763)
Q Consensus 245 tr~~fe~l~~~l~~~i~~~i~~~l~~a~~~~~~i~~V~lvGGssriP~v~~~l~~~fg~~~~~~~n~deaVa~GAa~~aa 324 (763)
+|..+..++.-+++-+.--++.+++...-....++.|.++||+++.+.+.+++.++||.++...-+ .|+.++|||+.|+
T Consensus 411 ~~~~~~~~~rAvlEgiaf~~r~~~e~l~~~g~~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~-~e~~alGaA~lA~ 489 (541)
T TIGR01315 411 SKDGLALLYYATMEFIAYGTRQIVEAMNTAGHTIKSIFMSGGQCQNPLLMQLIADACDMPVLIPYV-NEAVLHGAAMLGA 489 (541)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccEEEEecCcccCHHHHHHHHHHHCCeeEecCh-hHHHHHHHHHHHH
Confidence 566666666666666655555555432111124789999999999999999999999998876644 5688999999998
Q ss_pred hhcCC
Q psy740 325 MLSPA 329 (763)
Q Consensus 325 ~ls~~ 329 (763)
.-.+.
T Consensus 490 ~~~G~ 494 (541)
T TIGR01315 490 KAAGT 494 (541)
T ss_pred HhcCc
Confidence 66554
No 55
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=95.67 E-value=0.025 Score=61.58 Aligned_cols=46 Identities=22% Similarity=0.224 Sum_probs=43.4
Q ss_pred cEEEEecCCCCcHHHHHHHHHhcCCCCCCCCChhHHHHhHHHHHcc
Q psy740 279 HSVEIVGGSSRIPAIKGLIEKIFQKTPSTTLNQDEAVARGCALQCA 324 (763)
Q Consensus 279 ~~V~lvGGssriP~v~~~l~~~fg~~~~~~~n~deaVa~GAa~~aa 324 (763)
+.|+++||.++.+.+.+.+.+.+|.++..+.+|+.+.|+|||++|.
T Consensus 357 ~~VvftGGva~N~gvv~ale~~Lg~~iivPe~pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 357 EPVILVGGTSLIEGLVKALGDLLGIEVVVPEYSQYIGAVGAALLAS 402 (404)
T ss_pred CcEEEECChhhhHHHHHHHHHHhCCcEEECCcccHHHHHHHHHHhc
Confidence 4599999999999999999999999999999999999999999985
No 56
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=95.58 E-value=0.035 Score=63.67 Aligned_cols=53 Identities=25% Similarity=0.428 Sum_probs=45.5
Q ss_pred CccEEEEecCCCCcHHHHHHHHHhcCCCCCCCCChhHHHHhHHHHHcchhcCCc
Q psy740 277 DIHSVEIVGGSSRIPAIKGLIEKIFQKTPSTTLNQDEAVARGCALQCAMLSPAV 330 (763)
Q Consensus 277 ~i~~V~lvGGssriP~v~~~l~~~fg~~~~~~~n~deaVa~GAa~~aa~ls~~~ 330 (763)
.++.|.++||.+|.+.+.+++.++||.++... ...|+.++|||+.|+.-.+.+
T Consensus 390 ~~~~i~~~GG~s~s~~~~Q~~Adv~g~pv~~~-~~~e~~a~GaA~~a~~~~g~~ 442 (481)
T TIGR01312 390 PIQSIRLIGGGAKSPAWRQMLADIFGTPVDVP-EGEEGPALGAAILAAWALGEK 442 (481)
T ss_pred CcceEEEeccccCCHHHHHHHHHHhCCceeec-CCCcchHHHHHHHHHHhcCCC
Confidence 37899999999999999999999999987655 466789999999998766543
No 57
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=95.55 E-value=0.037 Score=64.29 Aligned_cols=80 Identities=13% Similarity=0.140 Sum_probs=56.0
Q ss_pred eHHHHHHHhH-HHHHHHHHHHHHHHHHcCCCCCCccEEEEecCC-CCcHHHHHHHHHhcCCCCCCCCChhHHHHhHHHHH
Q psy740 245 CRSEMEELCK-DVFENVEKTLKDCLEKSKLALSDIHSVEIVGGS-SRIPAIKGLIEKIFQKTPSTTLNQDEAVARGCALQ 322 (763)
Q Consensus 245 tr~~fe~l~~-~l~~~i~~~i~~~l~~a~~~~~~i~~V~lvGGs-sriP~v~~~l~~~fg~~~~~~~n~deaVa~GAa~~ 322 (763)
+|.+|-..+- -+.-.+...++ .|+..+. .++.|.++||+ ++.+.+.+++.++||.++...-++ |+.|+|||+.
T Consensus 406 ~~~~~~RAvlEgia~~~~~~l~-~l~~~g~---~~~~i~~~GGg~a~s~~w~Qi~Adv~g~pV~~~~~~-e~~a~GaA~l 480 (536)
T TIGR01234 406 DAPLLYRALIEATAFGTRMIME-TFTDSGV---PVEELMAAGGIARKNPVIMQIYADVTNRPLQIVASD-QAPALGAAIF 480 (536)
T ss_pred CHHHHHHHHHHHHHHHHHHHHH-HHHhcCC---CcceEEEeCCccccCHHHHHHHHHhhCCeeEeccCC-cchhHHHHHH
Confidence 4555543332 22223333333 3334444 47899999999 999999999999999988666554 6889999999
Q ss_pred cchhcCC
Q psy740 323 CAMLSPA 329 (763)
Q Consensus 323 aa~ls~~ 329 (763)
|+.-.+.
T Consensus 481 A~~~~G~ 487 (536)
T TIGR01234 481 AAVAAGV 487 (536)
T ss_pred HHHHcCC
Confidence 9876654
No 58
>PRK00047 glpK glycerol kinase; Provisional
Probab=95.50 E-value=0.03 Score=64.46 Aligned_cols=51 Identities=14% Similarity=0.142 Sum_probs=44.1
Q ss_pred ccEEEEecCCCCcHHHHHHHHHhcCCCCCCCCChhHHHHhHHHHHcchhcCC
Q psy740 278 IHSVEIVGGSSRIPAIKGLIEKIFQKTPSTTLNQDEAVARGCALQCAMLSPA 329 (763)
Q Consensus 278 i~~V~lvGGssriP~v~~~l~~~fg~~~~~~~n~deaVa~GAa~~aa~ls~~ 329 (763)
++.|.++||++|.|.+.+++.++||.++... ...|+.|+|||+.|+.-.+.
T Consensus 404 ~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~-~~~e~~a~GaA~~A~~~~G~ 454 (498)
T PRK00047 404 LKELRVDGGAVANNFLMQFQADILGVPVERP-VVAETTALGAAYLAGLAVGF 454 (498)
T ss_pred CceEEEecCcccCHHHHHHHHHhhCCeeEec-CcccchHHHHHHHHhhhcCc
Confidence 7899999999999999999999999988644 45578999999999876554
No 59
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=95.50 E-value=0.025 Score=64.97 Aligned_cols=52 Identities=15% Similarity=0.194 Sum_probs=44.7
Q ss_pred CccEEEEecCCCCcHHHHHHHHHhcCCCCCCCCChhHHHHhHHHHHcchhcCC
Q psy740 277 DIHSVEIVGGSSRIPAIKGLIEKIFQKTPSTTLNQDEAVARGCALQCAMLSPA 329 (763)
Q Consensus 277 ~i~~V~lvGGssriP~v~~~l~~~fg~~~~~~~n~deaVa~GAa~~aa~ls~~ 329 (763)
.++.|.++||++|.+.+.+++.++||.++... +..|+.|+|||+.|+.-.+.
T Consensus 399 ~~~~i~~~GGga~s~~w~Qi~ADv~g~pv~~~-~~~e~~alGaA~~a~~~~G~ 450 (493)
T TIGR01311 399 EITKLRVDGGMTNNNLLMQFQADILGVPVVRP-KVTETTALGAAYAAGLAVGY 450 (493)
T ss_pred CCceEEEecccccCHHHHHHHHHhcCCeeEec-CCCcchHHHHHHHHHhhcCc
Confidence 37899999999999999999999999988654 45678899999999766554
No 60
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=95.28 E-value=0.05 Score=58.02 Aligned_cols=72 Identities=14% Similarity=0.214 Sum_probs=54.5
Q ss_pred HHHhHHHHHHHHHHHH-HHHHHcCCCCCCccEEEEecCCCCcHHHHHHHHHhcCCCCCCCCChhHHHHhHHHHHcch
Q psy740 250 EELCKDVFENVEKTLK-DCLEKSKLALSDIHSVEIVGGSSRIPAIKGLIEKIFQKTPSTTLNQDEAVARGCALQCAM 325 (763)
Q Consensus 250 e~l~~~l~~~i~~~i~-~~l~~a~~~~~~i~~V~lvGGssriP~v~~~l~~~fg~~~~~~~n~deaVa~GAa~~aa~ 325 (763)
|+++..+...+..-+- +++++-.+. + -|+|+||.+..-.+.+++.+.+|.++..+.+|...-|+|||++|..
T Consensus 318 EdI~AGl~~Sv~~~v~~~~~~~~~i~--~--~iv~~GGva~n~av~~ale~~lg~~V~vP~~~ql~GAiGAAL~a~~ 390 (396)
T COG1924 318 EDILAGLAYSVAENVAEKVIKRVDIE--E--PIVLQGGVALNKAVVRALEDLLGRKVIVPPYAQLMGAIGAALIAKE 390 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCC--C--CEEEECcchhhHHHHHHHHHHhCCeeecCCccchhhHHHHHHHHhh
Confidence 5556655544433222 244433322 2 2999999999999999999999999999999999999999998843
No 61
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=95.27 E-value=0.05 Score=58.76 Aligned_cols=45 Identities=13% Similarity=0.094 Sum_probs=40.5
Q ss_pred cEEEEecCCCCcHHHHHHHHHhcC-----CCCCCCCChhHHHHhHHHHHc
Q psy740 279 HSVEIVGGSSRIPAIKGLIEKIFQ-----KTPSTTLNQDEAVARGCALQC 323 (763)
Q Consensus 279 ~~V~lvGGssriP~v~~~l~~~fg-----~~~~~~~n~deaVa~GAa~~a 323 (763)
..|+|+||.++.+.+.+.|++.++ .++..+.+|+.+.|+|||++|
T Consensus 383 ~~VvftGGvA~N~gvv~aLe~~L~~~~~~~~V~Vp~~pq~~GALGAAL~a 432 (432)
T TIGR02259 383 DQFTFTGGVAKNEAAVKELRKLIKENYGEVQINIDPDSIYTGALGASEFA 432 (432)
T ss_pred CCEEEECCccccHHHHHHHHHHHccccCCCeEecCCCccHHHHHHHHHhC
Confidence 579999999999999999999994 456778899999999999976
No 62
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=95.21 E-value=0.039 Score=62.92 Aligned_cols=52 Identities=13% Similarity=0.132 Sum_probs=44.5
Q ss_pred CccEEEEecCCCCcHHHHHHHHHhcCCCCCCCCChhHHHHhHHHHHcchhcCC
Q psy740 277 DIHSVEIVGGSSRIPAIKGLIEKIFQKTPSTTLNQDEAVARGCALQCAMLSPA 329 (763)
Q Consensus 277 ~i~~V~lvGGssriP~v~~~l~~~fg~~~~~~~n~deaVa~GAa~~aa~ls~~ 329 (763)
.++.|.++||++|.|.+.+++.++||.++...-+ .|+.++|||+.|+.-.+.
T Consensus 393 ~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~~-~e~~~lGaA~~a~~a~G~ 444 (465)
T TIGR02628 393 KASELLLVGGGSKNTLWNQIRANMLDIPVKVVDD-AETTVAGAAMFGFYGVGE 444 (465)
T ss_pred CcceEEEecCccCCHHHHHHhhhhcCCeeEeccC-CcchHHHHHHHHHHhcCc
Confidence 3788999999999999999999999998865554 478899999999866554
No 63
>KOG2531|consensus
Probab=95.18 E-value=0.045 Score=59.36 Aligned_cols=55 Identities=24% Similarity=0.271 Sum_probs=48.1
Q ss_pred HcCCCCCCccEEEEecCCCCcHHHHHHHHHhcCCCCCCCCChhHHHHhHHHHHcch
Q psy740 270 KSKLALSDIHSVEIVGGSSRIPAIKGLIEKIFQKTPSTTLNQDEAVARGCALQCAM 325 (763)
Q Consensus 270 ~a~~~~~~i~~V~lvGGssriP~v~~~l~~~fg~~~~~~~n~deaVa~GAa~~aa~ 325 (763)
..|.....-..|++|||.||.-.|-+.|.++||.++..- +..+++|.|+|+.|+.
T Consensus 435 ~lg~~~~~~~rilvtGGAS~N~~Ilq~iadVf~apVy~~-~~~~sa~lG~A~ra~y 489 (545)
T KOG2531|consen 435 PLGFKSNPPTRILVTGGASRNEAILQIIADVFGAPVYTI-EGPNSAALGGAYRAAY 489 (545)
T ss_pred cccCCCCCCceEEEecCccccHHHHHHHHHHhCCCeEee-cCCchhhHHHHHHHHH
Confidence 456666678999999999999999999999999987755 8889999999999864
No 64
>PRK04123 ribulokinase; Provisional
Probab=95.15 E-value=0.039 Score=64.33 Aligned_cols=52 Identities=19% Similarity=0.323 Sum_probs=44.1
Q ss_pred CccEEEEecCC-CCcHHHHHHHHHhcCCCCCCCCChhHHHHhHHHHHcchhcCC
Q psy740 277 DIHSVEIVGGS-SRIPAIKGLIEKIFQKTPSTTLNQDEAVARGCALQCAMLSPA 329 (763)
Q Consensus 277 ~i~~V~lvGGs-sriP~v~~~l~~~fg~~~~~~~n~deaVa~GAa~~aa~ls~~ 329 (763)
.++.|.++||+ +|.+.+.+++.++||.++...- ..|+.|+|||+.|+.-.+.
T Consensus 438 ~~~~i~~~GGg~s~s~~w~Qi~ADv~g~pV~~~~-~~e~~alGaA~lA~~~~G~ 490 (548)
T PRK04123 438 PVEEVIAAGGIARKNPVLMQIYADVLNRPIQVVA-SDQCPALGAAIFAAVAAGA 490 (548)
T ss_pred CcceEEEeCCCcccCHHHHHHHHHhcCCceEecC-ccccchHHHHHHHHHHhcc
Confidence 37889999999 9999999999999999885443 4678899999999875543
No 65
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=95.10 E-value=0.06 Score=62.10 Aligned_cols=52 Identities=19% Similarity=0.224 Sum_probs=44.6
Q ss_pred ccEEEEecCCCCcHHHHHHHHHhcCCCCCCCCChhHHHHhHHHHHcchhcCCc
Q psy740 278 IHSVEIVGGSSRIPAIKGLIEKIFQKTPSTTLNQDEAVARGCALQCAMLSPAV 330 (763)
Q Consensus 278 i~~V~lvGGssriP~v~~~l~~~fg~~~~~~~n~deaVa~GAa~~aa~ls~~~ 330 (763)
++.|.++||.++.+.+.+++.+.||.++...- ..|+.++|||+.|+.-.+.+
T Consensus 407 ~~~i~~~GG~a~s~~w~Qi~Adv~g~pV~~~~-~~e~~alGaAl~aa~a~G~~ 458 (504)
T PTZ00294 407 LNSLRVDGGLTKNKLLMQFQADILGKDIVVPE-MAETTALGAALLAGLAVGVW 458 (504)
T ss_pred cceEEEecccccCHHHHHHHHHHhCCceEecC-cccchHHHHHHHHHhhcCcc
Confidence 78999999999999999999999999886554 55688999999998766543
No 66
>KOG2517|consensus
Probab=95.07 E-value=0.063 Score=60.26 Aligned_cols=73 Identities=18% Similarity=0.212 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCccEEEEecCCCCcHHHHHHHHHhcCCCCCCCCChhHHHHhHHHHHcchhcCCc
Q psy740 254 KDVFENVEKTLKDCLEKSKLALSDIHSVEIVGGSSRIPAIKGLIEKIFQKTPSTTLNQDEAVARGCALQCAMLSPAV 330 (763)
Q Consensus 254 ~~l~~~i~~~i~~~l~~a~~~~~~i~~V~lvGGssriP~v~~~l~~~fg~~~~~~~n~deaVa~GAa~~aa~ls~~~ 330 (763)
+-+--++..+|+.+-++.+ ..|+.+.+.||.|+.|.+.+.+.+.+|.++.++.++|- |+.|||+.|+..++.+
T Consensus 394 eai~fqtr~Il~am~~~~~---~~i~~L~~~GG~s~N~ll~Q~~ADi~g~pv~~p~~~e~-~~~GaA~l~~~a~~~~ 466 (516)
T KOG2517|consen 394 EAIAFQTREILEAMERDGG---HPISTLRVCGGLSKNPLLMQLQADILGLPVVRPQDVEA-VALGAAMLAGAASGKW 466 (516)
T ss_pred HHHHHHHHHHHHHHHHhcC---CCcceeeeccccccCHHHHHHHHHHhCCccccccchhH-HHHHHHHHHHhhcCCc
Confidence 4444455566666555554 34778999999999999999999999999999999987 9999999999888763
No 67
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=95.00 E-value=0.098 Score=54.06 Aligned_cols=45 Identities=20% Similarity=0.119 Sum_probs=38.0
Q ss_pred cEEEEecCCCCcHHHHHHHHHhcCC-C----CCCCCChhHHHHhHHHHHc
Q psy740 279 HSVEIVGGSSRIPAIKGLIEKIFQK-T----PSTTLNQDEAVARGCALQC 323 (763)
Q Consensus 279 ~~V~lvGGssriP~v~~~l~~~fg~-~----~~~~~n~deaVa~GAa~~a 323 (763)
+.|+|.||.++.+.+.+.|++.++. + +..+.+|+.+.|+|||++|
T Consensus 213 ~~v~~~GGva~n~~~~~~le~~l~~~~~~~~v~~~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 213 GTVLCTGGLALDAGLLEALKDAIQEAKMAVAAENHPDAIYAGAIGAALWG 262 (262)
T ss_pred CcEEEECcccccHHHHHHHHHHhccCCcceEecCCCcchHHHHHHHHHcC
Confidence 3599999999999999999999842 3 4456689999999999975
No 68
>PLN02295 glycerol kinase
Probab=94.98 E-value=0.052 Score=62.72 Aligned_cols=53 Identities=11% Similarity=0.147 Sum_probs=45.0
Q ss_pred CccEEEEecCCCCcHHHHHHHHHhcCCCCCCCCChhHHHHhHHHHHcchhcCCc
Q psy740 277 DIHSVEIVGGSSRIPAIKGLIEKIFQKTPSTTLNQDEAVARGCALQCAMLSPAV 330 (763)
Q Consensus 277 ~i~~V~lvGGssriP~v~~~l~~~fg~~~~~~~n~deaVa~GAa~~aa~ls~~~ 330 (763)
.++.|.++||+++.|.+.+++.++||.++... +..|+.|+|||+.|+.-.+.+
T Consensus 412 ~~~~i~~~GGga~s~~w~Qi~ADv~g~pV~~~-~~~e~~alGaA~~A~~~~G~~ 464 (512)
T PLN02295 412 GLFLLRVDGGATANNLLMQIQADLLGSPVVRP-ADIETTALGAAYAAGLAVGLW 464 (512)
T ss_pred CcceEEEeccchhCHHHHHHHHHhcCCceEec-CccccHHHHHHHHHHhhcCcC
Confidence 47889999999999999999999999998644 455789999999998766543
No 69
>PRK10331 L-fuculokinase; Provisional
Probab=94.98 E-value=0.052 Score=62.01 Aligned_cols=53 Identities=15% Similarity=0.116 Sum_probs=45.0
Q ss_pred CccEEEEecCCCCcHHHHHHHHHhcCCCCCCCCChhHHHHhHHHHHcchhcCCc
Q psy740 277 DIHSVEIVGGSSRIPAIKGLIEKIFQKTPSTTLNQDEAVARGCALQCAMLSPAV 330 (763)
Q Consensus 277 ~i~~V~lvGGssriP~v~~~l~~~fg~~~~~~~n~deaVa~GAa~~aa~ls~~~ 330 (763)
.++.|.++||++|.|.+.+++.++||.++...- ..|++++|||+.|+.-.+.+
T Consensus 389 ~~~~i~~~GGga~s~~w~Qi~Advlg~pV~~~~-~~e~~a~GaA~la~~~~G~~ 441 (470)
T PRK10331 389 KASELLLVGGGSRNALWNQIKANMLDIPIKVLD-DAETTVAGAAMFGWYGVGEF 441 (470)
T ss_pred CCceEEEEcccccCHHHHHHHHHhcCCeeEecC-cccchHHHHHHHHHHhcCCC
Confidence 478999999999999999999999999886554 45688999999998765543
No 70
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=94.89 E-value=0.068 Score=61.65 Aligned_cols=52 Identities=12% Similarity=0.181 Sum_probs=44.7
Q ss_pred CccEEEEecCCCCcHHHHHHHHHhcCCCCCCCCChhHHHHhHHHHHcchhcCC
Q psy740 277 DIHSVEIVGGSSRIPAIKGLIEKIFQKTPSTTLNQDEAVARGCALQCAMLSPA 329 (763)
Q Consensus 277 ~i~~V~lvGGssriP~v~~~l~~~fg~~~~~~~n~deaVa~GAa~~aa~ls~~ 329 (763)
.++.|.++||+++.+.+.+++.++||.++...-++ |+.++|||+.|+.-.+.
T Consensus 401 ~~~~i~~~GGga~s~~w~Qi~Adv~g~pv~~~~~~-e~~a~GaA~la~~~~G~ 452 (505)
T TIGR01314 401 PLNMIQATGGFASSEVWRQMMSDIFEQEIVVPESY-ESSCLGACILGLKALGL 452 (505)
T ss_pred CCcEEEEecCcccCHHHHHHHHHHcCCeeEecCCC-CcchHHHHHHHHHhcCc
Confidence 47899999999999999999999999988655544 68899999999876554
No 71
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=94.80 E-value=0.099 Score=59.67 Aligned_cols=52 Identities=17% Similarity=0.084 Sum_probs=44.0
Q ss_pred CccEEEEecCCCCcHHHHHHHHHhcCCCCCCCCChhHHHHhHHHHHcchhcCCc
Q psy740 277 DIHSVEIVGGSSRIPAIKGLIEKIFQKTPSTTLNQDEAVARGCALQCAMLSPAV 330 (763)
Q Consensus 277 ~i~~V~lvGGssriP~v~~~l~~~fg~~~~~~~n~deaVa~GAa~~aa~ls~~~ 330 (763)
.++.|.++||++|.+.+.+++.++||.++.... .|+.++|||+.|+.-.+.+
T Consensus 375 ~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~--~ea~alGaa~~a~~a~G~~ 426 (471)
T PRK10640 375 PFSQLHIVGGGCQNALLNQLCADACGIRVIAGP--VEASTLGNIGIQLMTLDEL 426 (471)
T ss_pred CcceEEEECChhhhHHHHHHHHHHhCCCeeeCC--hhHHHHHHHHHHHHHcCCc
Confidence 378899999999999999999999999986543 3799999999987665543
No 72
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=94.80 E-value=0.059 Score=61.25 Aligned_cols=52 Identities=21% Similarity=0.130 Sum_probs=44.4
Q ss_pred CccEEEEecCCCCcHHHHHHHHHhcCCCCCCCCChhHHHHhHHHHHcchhcCCc
Q psy740 277 DIHSVEIVGGSSRIPAIKGLIEKIFQKTPSTTLNQDEAVARGCALQCAMLSPAV 330 (763)
Q Consensus 277 ~i~~V~lvGGssriP~v~~~l~~~fg~~~~~~~n~deaVa~GAa~~aa~ls~~~ 330 (763)
.++.|.++||++|.+++.+++.++||.++... . .|+.|+|||+.|+.-.+.+
T Consensus 387 ~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~-~-~e~~a~GaA~~a~~~~G~~ 438 (454)
T TIGR02627 387 PISQLHIVGGGSQNAFLNQLCADACGIRVIAG-P-VEASTLGNIGVQLMALDEI 438 (454)
T ss_pred CcCEEEEECChhhhHHHHHHHHHHhCCceEcC-C-chHHHHHHHHHHHHhcCCc
Confidence 37899999999999999999999999998643 3 6799999999998765543
No 73
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=94.59 E-value=0.1 Score=60.50 Aligned_cols=51 Identities=20% Similarity=0.260 Sum_probs=44.0
Q ss_pred ccEEEEecCCCCcHHHHHHHHHhcCCCCCCCCChhHHHHhHHHHHcchhcCC
Q psy740 278 IHSVEIVGGSSRIPAIKGLIEKIFQKTPSTTLNQDEAVARGCALQCAMLSPA 329 (763)
Q Consensus 278 i~~V~lvGGssriP~v~~~l~~~fg~~~~~~~n~deaVa~GAa~~aa~ls~~ 329 (763)
++.|.++||++|.+.+.+++.++||.++...-++ |+.++|||+.|+.-.+.
T Consensus 410 ~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~~-e~~alGaA~lA~~~~G~ 460 (520)
T PRK10939 410 PSSLVFAGGGSKGKLWSQILADVTGLPVKVPVVK-EATALGCAIAAGVGAGI 460 (520)
T ss_pred CcEEEEeCCcccCHHHHHHHHHhcCCeeEEeccc-CchHHHHHHHHHHHhCC
Confidence 7899999999999999999999999998755544 68899999999766554
No 74
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=93.72 E-value=0.21 Score=57.58 Aligned_cols=50 Identities=24% Similarity=0.209 Sum_probs=38.0
Q ss_pred CccEEEEecCCCCcHHHHHHHHHhcCCCCCCCCChhHHHHhHHHHHcchhc
Q psy740 277 DIHSVEIVGGSSRIPAIKGLIEKIFQKTPSTTLNQDEAVARGCALQCAMLS 327 (763)
Q Consensus 277 ~i~~V~lvGGssriP~v~~~l~~~fg~~~~~~~n~deaVa~GAa~~aa~ls 327 (763)
.++.|.++||++|.++..+++.+.||.++..... .|+.+.|+|+.++.-.
T Consensus 401 ~~~~i~~~GGgars~~w~Qi~Ad~~g~~v~~~~~-~e~~a~g~A~~~~~~~ 450 (502)
T COG1070 401 PPSRVRVVGGGARSPLWLQILADALGLPVVVPEV-EEAGALGGAALAAAAL 450 (502)
T ss_pred CccEEEEECCcccCHHHHHHHHHHcCCeeEecCc-ccchHHHHHHHHHHHh
Confidence 3679999999999999999999999998875544 4555555555554443
No 75
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=93.60 E-value=0.26 Score=55.14 Aligned_cols=63 Identities=21% Similarity=0.296 Sum_probs=52.6
Q ss_pred HHHHHHHcCCCCCCccEEEEecCCCCcHHHHHHHHHhcCCCCCCCCChhHHHHhHHHHHcchhcCCc
Q psy740 264 LKDCLEKSKLALSDIHSVEIVGGSSRIPAIKGLIEKIFQKTPSTTLNQDEAVARGCALQCAMLSPAV 330 (763)
Q Consensus 264 i~~~l~~a~~~~~~i~~V~lvGGssriP~v~~~l~~~fg~~~~~~~n~deaVa~GAa~~aa~ls~~~ 330 (763)
|-.++++.|+. |+.|.+.||-.+.|.+.+.+.++.|.++... ..++++++|+|+.||.-.+.+
T Consensus 421 Iie~~~~~g~~---Id~l~~sGG~~KN~llmql~aDvtg~~v~i~-~s~~a~llGsAm~~avAag~~ 483 (544)
T COG1069 421 IIETFEDQGIA---IDTLFASGGIRKNPLLMQLYADVTGRPVVIP-ASDQAVLLGAAMFAAVAAGVH 483 (544)
T ss_pred HHHHHHHcCCe---eeEEEecCCcccCHHHHHHHHHhcCCeEEee-cccchhhhHHHHHHHHHhccC
Confidence 34555667765 8999999999999999999999999887655 678899999999998776543
No 76
>KOG0679|consensus
Probab=93.44 E-value=4.5 Score=43.49 Aligned_cols=71 Identities=11% Similarity=0.165 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCcEEEeecccCCHHHHHHHHHHHh----------------------------------
Q psy740 119 QITAMLLTKLRETSEIALQCNISDCVLSVPSFYTNAERKALLDAAK---------------------------------- 164 (763)
Q Consensus 119 ev~a~~L~~lk~~ae~~~~~~v~~~VITVPa~f~~~qR~al~~Aa~---------------------------------- 164 (763)
++.-++.+|..+..-. ....-.-++||-|++=+.+.|.-+.+.+-
T Consensus 86 D~~~~~w~~~~~~~Lk-~~p~ehP~litEp~wN~~~~Rek~~ElmFE~~nvPAf~L~k~~v~~AFA~GrstalVvDiGa~ 164 (426)
T KOG0679|consen 86 DLFEMQWRYAYKNQLK-VNPEEHPVLITEPPWNTRANREKLTELMFEKLNVPAFYLAKTAVCTAFANGRSTALVVDIGAT 164 (426)
T ss_pred HHHHHHHHHHHhhhhh-cCccccceeeecCCCCcHHHHHHHHHHHHhhcCCceEEEechHHHHHHhcCCCceEEEEecCC
Confidence 4566777776642211 22233468999999999999998887766
Q ss_pred -----------Hhhhc-CCCCCchhHHHHHHHHHHHHH
Q psy740 165 -----------IIASA-ANPYLGGRNIDYKLAKHFSQE 190 (763)
Q Consensus 165 -----------vl~~~-~d~~lGG~d~D~~l~~~~~~~ 190 (763)
|+..+ --..|||+.++..+.+.|..+
T Consensus 165 ~~svsPV~DG~Vlqk~vvks~laGdFl~~~~~q~l~~~ 202 (426)
T KOG0679|consen 165 HTSVSPVHDGYVLQKGVVKSPLAGDFLNDQCRQLLEPK 202 (426)
T ss_pred CceeeeeecceEeeeeeEecccchHHHHHHHHHHHhhc
Confidence 11111 124699999999999988865
No 77
>PRK13317 pantothenate kinase; Provisional
Probab=93.42 E-value=0.22 Score=52.33 Aligned_cols=48 Identities=23% Similarity=0.268 Sum_probs=42.2
Q ss_pred CccEEEEec-CCCCcHHHHHHHHHhc---CCCCCCCCChhHHHHhHHHHHcc
Q psy740 277 DIHSVEIVG-GSSRIPAIKGLIEKIF---QKTPSTTLNQDEAVARGCALQCA 324 (763)
Q Consensus 277 ~i~~V~lvG-GssriP~v~~~l~~~f---g~~~~~~~n~deaVa~GAa~~aa 324 (763)
.+..|+++| |.++.|.+++.+.+++ +.++..+.||.-+.|+|||++|.
T Consensus 222 ~~~~Ivf~G~gla~n~~l~~~l~~~l~~~~~~~~~p~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 222 NIENIVYIGSTLTNNPLLQEIIESYTKLRNCTPIFLENGGYSGAIGALLLAT 273 (277)
T ss_pred CCCeEEEECcccccCHHHHHHHHHHHhcCCceEEecCCCchhHHHHHHHHhh
Confidence 357899999 7999999999999988 56677788999999999999874
No 78
>KOG0676|consensus
Probab=93.16 E-value=0.69 Score=50.27 Aligned_cols=27 Identities=15% Similarity=0.358 Sum_probs=22.6
Q ss_pred CCCccEEEEecCCCCcHHHHHHHHHhc
Q psy740 275 LSDIHSVEIVGGSSRIPAIKGLIEKIF 301 (763)
Q Consensus 275 ~~~i~~V~lvGGssriP~v~~~l~~~f 301 (763)
+.-...|+|+||+|-+|.+.+.|.+.+
T Consensus 288 k~L~~nivLsGGtT~~pGl~~Rl~kEl 314 (372)
T KOG0676|consen 288 KDLYENIVLSGGTTMFPGLADRLQKEL 314 (372)
T ss_pred HHHHhheEEeCCcccchhHHHHHHHHH
Confidence 333578999999999999999887765
No 79
>KOG0100|consensus
Probab=92.12 E-value=0.73 Score=49.37 Aligned_cols=50 Identities=32% Similarity=0.571 Sum_probs=44.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHhhhhhhcC
Q psy740 653 NHLDAAEITVVEEKVANALKWAENAQSLMNEFTDRTKDAPVPTSEIKNEMQNLNNAVNPVFSK 715 (763)
Q Consensus 653 ~~~t~~e~~~l~~~~~e~~~Wl~~~~~~q~~~~~~~~dP~~~~~di~~k~~~l~~~~~~l~~k 715 (763)
..++.+|.+.+.+.+++...||++....-.. |...|.+.|+..|++|++|
T Consensus 591 ~Kl~~edKe~~e~av~e~~eWL~~n~~a~~E-------------e~~ek~kele~vv~Piisk 640 (663)
T KOG0100|consen 591 GKLSDEDKETIEDAVEEALEWLESNQDASKE-------------EFKEKKKELEAVVQPIISK 640 (663)
T ss_pred ccCChhHHHHHHHHHHHHHHHHhhcccccHH-------------HHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999999999998554444 9999999999999999976
No 80
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=90.08 E-value=2.9 Score=49.83 Aligned_cols=72 Identities=17% Similarity=0.325 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHH
Q psy740 627 AFENIFCSIQIAQKKISMFKEGDERLNHLDAAEITVVEEKVANALKWAENAQSLMNEFTDRTKDAPVPTSEIKNEMQNLN 706 (763)
Q Consensus 627 a~~~l~~~l~~~~~~l~~~~~~~~~~~~~t~~e~~~l~~~~~e~~~Wl~~~~~~q~~~~~~~~dP~~~~~di~~k~~~l~ 706 (763)
+...|...|..++..|.. ++-...+++++++.+.+.+++++.||++.. . -+..++..|++.|.
T Consensus 540 akN~lEs~Iy~~r~~L~~----~~~~~~~t~ee~~~l~~~l~~~~~wL~~~~----~---------~~~~~~~~kl~eL~ 602 (653)
T PTZ00009 540 AKNGLENYCYSMKNTLQD----EKVKGKLSDSDKATIEKAIDEALEWLEKNQ----L---------AEKEEFEHKQKEVE 602 (653)
T ss_pred HHhhhHHHHHHHHHHHhh----hhhhccCCHHHHHHHHHHHHHHHHHHhcCC----c---------hhHHHHHHHHHHHH
Confidence 445556666666665532 011235789999999999999999998521 1 13469999999999
Q ss_pred HhhhhhhcC
Q psy740 707 NAVNPVFSK 715 (763)
Q Consensus 707 ~~~~~l~~k 715 (763)
..++++..+
T Consensus 603 ~~~~pi~~r 611 (653)
T PTZ00009 603 SVCNPIMTK 611 (653)
T ss_pred HHHHHHHHH
Confidence 999999865
No 81
>KOG0677|consensus
Probab=88.49 E-value=3.4 Score=41.86 Aligned_cols=119 Identities=16% Similarity=0.220 Sum_probs=67.9
Q ss_pred CCchhHHHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHhccCCCc----------eeeEEeeccccCcccEE
Q psy740 173 YLGGRNIDYKLAKHFSQEFKQKYNIEPESNPRAFLRLLTEVEKLKKQMSANST----------KLPFGIECFMNDIDVKG 242 (763)
Q Consensus 173 ~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~----------~~~~~ie~l~~~~d~~~ 242 (763)
.+.|+|+++-|.+.+..+-- ..+-..+ ......+|+.|+--+. ++++-+++..--....+
T Consensus 180 dvAGRdiTryLi~LLl~rGY---afN~tAD-------FETVR~iKEKLCYisYd~e~e~kLalETTvLv~~YtLPDGRvI 249 (389)
T KOG0677|consen 180 DVAGRDITRYLIKLLLRRGY---AFNHTAD-------FETVREIKEKLCYISYDLELEQKLALETTVLVESYTLPDGRVI 249 (389)
T ss_pred cccchhHHHHHHHHHHhhcc---ccccccc-------hHHHHHHHhhheeEeechhhhhHhhhhheeeeeeeecCCCcEE
Confidence 58899999999998876522 1111111 1233455666653211 12222332211111234
Q ss_pred EeeHHHHH---HHhHHHH-----HHHHHHHHHHHHHcCCCC--CCccEEEEecCCCCcHHHHHHHHHhc
Q psy740 243 EMCRSEME---ELCKDVF-----ENVEKTLKDCLEKSKLAL--SDIHSVEIVGGSSRIPAIKGLIEKIF 301 (763)
Q Consensus 243 ~itr~~fe---~l~~~l~-----~~i~~~i~~~l~~a~~~~--~~i~~V~lvGGssriP~v~~~l~~~f 301 (763)
.+--+.|| .+++|-+ .-+.+++-++++.+.+.. .--.+|+|.||||--|.+-..|.+.+
T Consensus 250 kvG~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQaaDiD~R~~lYkhIVLSGGstMYPGLPSRLEkEl 318 (389)
T KOG0677|consen 250 KVGGERFEAPEALFQPHLINVEGPGVAELLFNTIQAADIDIRSELYKHIVLSGGSTMYPGLPSRLEKEL 318 (389)
T ss_pred EecceeccCchhhcCcceeccCCCcHHHHHHHHHHHhccchHHHHHhHeeecCCcccCCCCcHHHHHHH
Confidence 56666664 4566544 346677778887765542 12369999999999998877776644
No 82
>KOG0681|consensus
Probab=87.95 E-value=0.5 Score=52.53 Aligned_cols=67 Identities=18% Similarity=0.252 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHcCCCCCC--ccEEEEecCCCCcHHHHHHHHHhc------CC--CCCCCCChhHHHHhHHHHHcch
Q psy740 259 NVEKTLKDCLEKSKLALSD--IHSVEIVGGSSRIPAIKGLIEKIF------QK--TPSTTLNQDEAVARGCALQCAM 325 (763)
Q Consensus 259 ~i~~~i~~~l~~a~~~~~~--i~~V~lvGGssriP~v~~~l~~~f------g~--~~~~~~n~deaVa~GAa~~aa~ 325 (763)
-+.+++..+|......-.. +..|+|+||+|.+|.+.+.|..-| |. .+....||-..+=+||+.+|+.
T Consensus 538 Gl~Ei~~~il~r~p~~eq~~lV~nVllTGG~s~~pGmkeRi~kElt~mrP~gS~i~V~rasdP~LDAW~GA~~~a~n 614 (645)
T KOG0681|consen 538 GLAEIMDTILRRYPHDEQEKLVSNVLLTGGCSQLPGMKERIKKELTSMRPVGSSINVVRASDPVLDAWRGASAWAAN 614 (645)
T ss_pred hHHHHHHHHHHhCchhhhHhhhhheEeecccccCcCHHHHHHHHhheecccCCceEEEecCCcchhhhhhhHHhhcC
Confidence 3666777777765333222 789999999999999999998875 32 3556789999999999999986
No 83
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=86.10 E-value=1.7 Score=46.79 Aligned_cols=68 Identities=22% Similarity=0.297 Sum_probs=42.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHcCCCCCCccEEEEecCCCCcHHHHHHHHHhcCC---CCCCCCChhHHHHhHHH
Q psy740 247 SEMEELCKDVFENVEKTLKDCLEKSKLALSDIHSVEIVGGSSRIPAIKGLIEKIFQK---TPSTTLNQDEAVARGCA 320 (763)
Q Consensus 247 ~~fe~l~~~l~~~i~~~i~~~l~~a~~~~~~i~~V~lvGGssriP~v~~~l~~~fg~---~~~~~~n~deaVa~GAa 320 (763)
+++.+++...++++..-|.+.+. ...+++.|+||||++ ..+.+.|++.|+. .+...-||+.|-|+|-+
T Consensus 246 ~~v~~~i~~~~~~l~~~i~~~~~----~~~~~~~I~~vGGGA--~ll~~~Ik~~~~~~~~~i~i~~~pqfAnv~G~~ 316 (318)
T PF06406_consen 246 DDVSEVIEEAVEELINRILRELG----DFSDIDRIFFVGGGA--ILLKDAIKEAFPVPNERIVIVDDPQFANVRGFY 316 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT----TS-S-SEEEEESTTH--HHHHHHHHHHHT--GGGEE--SSGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh----hhccCCeEEEECCcH--HHHHHHHHHhhCCCCCcEEECCCchhhHHHHHh
Confidence 33444444444444444444432 245689999999997 5578899999873 45667799999999964
No 84
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=85.44 E-value=5.3 Score=47.71 Aligned_cols=67 Identities=15% Similarity=0.175 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHH
Q psy740 627 AFENIFCSIQIAQKKISMFKEGDERLNHLDAAEITVVEEKVANALKWAENAQSLMNEFTDRTKDAPVPTSEIKNEMQNLN 706 (763)
Q Consensus 627 a~~~l~~~l~~~~~~l~~~~~~~~~~~~~t~~e~~~l~~~~~e~~~Wl~~~~~~q~~~~~~~~dP~~~~~di~~k~~~l~ 706 (763)
+...+...|..++..+..+ ...++.++.+.+.+.+++++.||++. . ..+++.+.+.|+
T Consensus 569 akN~lEs~iy~~r~~l~e~------~~~~s~~ere~i~~~l~~~~~WL~~~----d------------~~~i~~k~~eL~ 626 (663)
T PTZ00400 569 AKNEAETLIYSVEKQLSDL------KDKISDADKDELKQKITKLRSTLSSE----D------------VDSIKDKTKQLQ 626 (663)
T ss_pred HHHHHHHHHHHHHHHHHHH------hhhCCHHHHHHHHHHHHHHHHHHhcC----C------------HHHHHHHHHHHH
Confidence 3444555555555555322 13578999999999999999999852 1 258999999999
Q ss_pred HhhhhhhcC
Q psy740 707 NAVNPVFSK 715 (763)
Q Consensus 707 ~~~~~l~~k 715 (763)
..+.++..+
T Consensus 627 ~~l~~l~~k 635 (663)
T PTZ00400 627 EASWKISQQ 635 (663)
T ss_pred HHHHHHHHH
Confidence 999999974
No 85
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=84.46 E-value=5.2 Score=47.50 Aligned_cols=67 Identities=15% Similarity=0.122 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHH
Q psy740 627 AFENIFCSIQIAQKKISMFKEGDERLNHLDAAEITVVEEKVANALKWAENAQSLMNEFTDRTKDAPVPTSEIKNEMQNLN 706 (763)
Q Consensus 627 a~~~l~~~l~~~~~~l~~~~~~~~~~~~~t~~e~~~l~~~~~e~~~Wl~~~~~~q~~~~~~~~dP~~~~~di~~k~~~l~ 706 (763)
+...+...|..++..|..+ ...+++++.+.+.+.+++++.||+.. . ..+++.+++.|.
T Consensus 528 akN~le~~i~~~~~~l~~~------~~~~~~~e~~~i~~~l~~~~~wL~~~----~------------~~~i~~k~~~L~ 585 (627)
T PRK00290 528 ARNQADSLIYQTEKTLKEL------GDKVPADEKEKIEAAIKELKEALKGE----D------------KEAIKAKTEELT 585 (627)
T ss_pred HHHHHHHHHHHHHHHHHHH------hccCCHHHHHHHHHHHHHHHHHHhcC----C------------HHHHHHHHHHHH
Confidence 3344556666666655422 13578999999999999999999863 1 269999999999
Q ss_pred HhhhhhhcC
Q psy740 707 NAVNPVFSK 715 (763)
Q Consensus 707 ~~~~~l~~k 715 (763)
..++++..+
T Consensus 586 ~~~~~~~~~ 594 (627)
T PRK00290 586 QASQKLGEA 594 (627)
T ss_pred HHHHHHHHH
Confidence 999999964
No 86
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=83.57 E-value=5.8 Score=46.78 Aligned_cols=67 Identities=22% Similarity=0.144 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHH
Q psy740 627 AFENIFCSIQIAQKKISMFKEGDERLNHLDAAEITVVEEKVANALKWAENAQSLMNEFTDRTKDAPVPTSEIKNEMQNLN 706 (763)
Q Consensus 627 a~~~l~~~l~~~~~~l~~~~~~~~~~~~~t~~e~~~l~~~~~e~~~Wl~~~~~~q~~~~~~~~dP~~~~~di~~k~~~l~ 706 (763)
+...+...|..++..|..+ ...+++++.+.+.+.+++++.||+.. .. .+|+.+.+.|+
T Consensus 526 ~kn~lEs~iy~~r~~l~~~------~~~~~~~e~~~l~~~l~~~~~wL~~~---d~-------------~~i~~~~~~l~ 583 (595)
T TIGR02350 526 ARNNADSLAYQAEKTLKEA------GDKLPAEEKEKIEKAVAELKEALKGE---DV-------------EEIKAKTEELQ 583 (595)
T ss_pred HHHHHHHHHHHHHHHHHHh------hccCCHHHHHHHHHHHHHHHHHHhcC---CH-------------HHHHHHHHHHH
Confidence 4445566666666666432 23579999999999999999999863 22 38999999999
Q ss_pred HhhhhhhcC
Q psy740 707 NAVNPVFSK 715 (763)
Q Consensus 707 ~~~~~l~~k 715 (763)
..++++..+
T Consensus 584 ~~~~~~~~~ 592 (595)
T TIGR02350 584 QALQKLAEA 592 (595)
T ss_pred HHHHHHHHH
Confidence 999988753
No 87
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=83.36 E-value=5.1 Score=39.49 Aligned_cols=37 Identities=14% Similarity=0.119 Sum_probs=30.4
Q ss_pred eeCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEeecccC
Q psy740 114 VFTPEQITAMLLTKLRETSEIALQCNISDCVLSVPSFY 151 (763)
Q Consensus 114 ~~~peev~a~~L~~lk~~ae~~~~~~v~~~VITVPa~f 151 (763)
...++. ++..++.+.+.++..++.++..+++++|...
T Consensus 42 I~d~~~-~~~~I~~ai~~ae~~~~~~i~~V~v~i~g~~ 78 (187)
T smart00842 42 IVDIEA-AARAIREAVEEAERMAGVKIDSVYVGISGRH 78 (187)
T ss_pred EECHHH-HHHHHHHHHHHHHHHhCCcccEEEEEEcCCc
Confidence 344444 4888889999999999999999999999875
No 88
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=81.90 E-value=4.1 Score=45.27 Aligned_cols=67 Identities=16% Similarity=0.186 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHcCCCCCCccEEEEecCCCCcHHHHHHHHHhcCCCCCCCCChhHHHHhHHHHHcchhcCC
Q psy740 259 NVEKTLKDCLEKSKLALSDIHSVEIVGGSSRIPAIKGLIEKIFQKTPSTTLNQDEAVARGCALQCAMLSPA 329 (763)
Q Consensus 259 ~i~~~i~~~l~~a~~~~~~i~~V~lvGGssriP~v~~~l~~~fg~~~~~~~n~deaVa~GAa~~aa~ls~~ 329 (763)
++.++++..=++++. .+..+-+=||.|+..++.+.+.+.+|.++.++.+ .|..|+|||+.|..-.+-
T Consensus 387 Q~~dv~~aM~~d~~~---~~~~LrvDGG~s~n~~lmQfqADilg~~V~Rp~~-~EtTAlGaA~lAGla~G~ 453 (499)
T COG0554 387 QTRDVLEAMEKDSGI---KLTRLRVDGGASRNNFLMQFQADILGVPVERPVV-LETTALGAAYLAGLAVGF 453 (499)
T ss_pred HHHHHHHHHHHhcCC---CceeEEEcCccccchhHHHHHHHHhCCeeecccc-chhhHHHHHHHHhhhhCc
Confidence 444444444445554 4788899999999999999999999998887755 468899999999876664
No 89
>PRK13411 molecular chaperone DnaK; Provisional
Probab=80.89 E-value=10 Score=45.29 Aligned_cols=69 Identities=10% Similarity=0.048 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHH
Q psy740 627 AFENIFCSIQIAQKKISMFKEGDERLNHLDAAEITVVEEKVANALKWAENAQSLMNEFTDRTKDAPVPTSEIKNEMQNLN 706 (763)
Q Consensus 627 a~~~l~~~l~~~~~~l~~~~~~~~~~~~~t~~e~~~l~~~~~e~~~Wl~~~~~~q~~~~~~~~dP~~~~~di~~k~~~l~ 706 (763)
+...+...|..++..|... ...+++++.+.+.+.+++++.||.+ +. ....+++.+++.|+
T Consensus 530 akN~lEs~iy~~r~~l~~~------~~~~~~~er~~i~~~l~~~~~wL~~----~~----------~~~~~~~~~~~el~ 589 (653)
T PRK13411 530 LKNQADSLLYSYESTLKEN------GELISEELKQRAEQKVEQLEAALTD----PN----------ISLEELKQQLEEFQ 589 (653)
T ss_pred HHHHHHHHHHHHHHHHHHh------hccCCHHHHHHHHHHHHHHHHHHhc----CC----------CCHHHHHHHHHHHH
Confidence 4455666666666666432 2457999999999999999999976 11 12368999999999
Q ss_pred HhhhhhhcC
Q psy740 707 NAVNPVFSK 715 (763)
Q Consensus 707 ~~~~~l~~k 715 (763)
..+.++..+
T Consensus 590 ~~~~~i~~~ 598 (653)
T PRK13411 590 QALLAIGAE 598 (653)
T ss_pred HHHHHHHHH
Confidence 999998853
No 90
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=80.56 E-value=5.3 Score=41.87 Aligned_cols=69 Identities=13% Similarity=0.175 Sum_probs=46.3
Q ss_pred HhHHHHHHHHHHHHHHHHHcCCCCCCccEEEEecCCCCcHHHHHHHHHhc-----CCCCCCCCChhHHHHhHHHHHc
Q psy740 252 LCKDVFENVEKTLKDCLEKSKLALSDIHSVEIVGGSSRIPAIKGLIEKIF-----QKTPSTTLNQDEAVARGCALQC 323 (763)
Q Consensus 252 l~~~l~~~i~~~i~~~l~~a~~~~~~i~~V~lvGGssriP~v~~~l~~~f-----g~~~~~~~n~deaVa~GAa~~a 323 (763)
++......+...+..++.+.+..... |+|+||..+...+.+.+.+.+ ..++.....|....|.|||++|
T Consensus 198 Il~~a~~~la~~i~~~~~~~~~~~~~---v~l~GGv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~a~GAallA 271 (271)
T PF01869_consen 198 ILAEAADELAELIKAVLKRLGPEKEP---VVLSGGVFKNSPLVKALRDALKEKLPKVPIIIPVEPQYDPAYGAALLA 271 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTCCCCS---EEEESGGGGCHHHHHHHGGGS-HHHHCCTCECECCGSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCe---EEEECCccCchHHHHHHHHHHHHhcCCCceEECCCCCccHHHHHHHhC
Confidence 34444445555555666555433222 999999999977777775544 2345567789999999999976
No 91
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=80.40 E-value=6.8 Score=41.12 Aligned_cols=85 Identities=19% Similarity=0.216 Sum_probs=56.6
Q ss_pred EeeHHHHHHHhHH---HHHHHHHHHHHHHHH-cCCCC--CCccEEEEecC--CCCcH-HHHHHHHHhcCCCCCCCCChhH
Q psy740 243 EMCRSEMEELCKD---VFENVEKTLKDCLEK-SKLAL--SDIHSVEIVGG--SSRIP-AIKGLIEKIFQKTPSTTLNQDE 313 (763)
Q Consensus 243 ~itr~~fe~l~~~---l~~~i~~~i~~~l~~-a~~~~--~~i~~V~lvGG--ssriP-~v~~~l~~~fg~~~~~~~n~de 313 (763)
..++++|.+.+.. ....+..++.-+..+ +.+.. .....|+|.|- ++|.| .|++.|++.|..++. .+.. +
T Consensus 222 ~~~~eE~~~~~~~~e~~~lA~dal~~~vameIasLl~l~~~~~~IvLSGs~g~~r~~~~v~~~I~~~L~~~V~-~L~~-k 299 (326)
T TIGR03281 222 ENAKEEILNNYNGDEPGRLALDSLAMSVAMEIASLGLLDCKEAGVVLAGSGGTLREPINFSGKIKRVLSCKVL-VLDS-E 299 (326)
T ss_pred cCCHHHHHHHhccChhHHHHHHHHHHHHHHHHHhheeccCCCCcEEEeCcchhccCchHHHHHHHHHhCCCeE-Eecc-h
Confidence 6788888877633 333333343333322 22222 23458999987 99999 999999999975432 2333 8
Q ss_pred HHHhHHHHHcchhcCC
Q psy740 314 AVARGCALQCAMLSPA 329 (763)
Q Consensus 314 aVa~GAa~~aa~ls~~ 329 (763)
+.|+|+|+.|--+.+.
T Consensus 300 sAA~G~AiIA~dI~gG 315 (326)
T TIGR03281 300 SAAIGLALIAEDIFSG 315 (326)
T ss_pred hhhhhHHHHHHHHhCC
Confidence 8999999999877766
No 92
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=79.35 E-value=2 Score=49.59 Aligned_cols=24 Identities=29% Similarity=0.290 Sum_probs=21.2
Q ss_pred CCCcceEEEEcCccceEEEEEECC
Q psy740 1 MAGMSVIGIDFGNESCFIAAARAG 24 (763)
Q Consensus 1 m~~~~viGID~GTt~s~va~~~~g 24 (763)
|.++.++|||+|||++++.+++..
T Consensus 1 ~~~~~~lgIDiGTt~~Kavl~d~~ 24 (502)
T COG1070 1 MMMKYVLGIDIGTTSVKAVLFDED 24 (502)
T ss_pred CCccEEEEEEcCCCcEEEEEEeCC
Confidence 567899999999999999998765
No 93
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=79.34 E-value=1.7 Score=37.71 Aligned_cols=20 Identities=25% Similarity=0.376 Sum_probs=17.3
Q ss_pred cceEEEEcCccceEEEEEEC
Q psy740 4 MSVIGIDFGNESCFIAAARA 23 (763)
Q Consensus 4 ~~viGID~GTt~s~va~~~~ 23 (763)
|.++|||+|.|++.+|+++.
T Consensus 1 ~~ilgiD~Ggt~i~~a~~d~ 20 (99)
T smart00732 1 KRVLGLDPGRKGIGVAVVDE 20 (99)
T ss_pred CcEEEEccCCCeEEEEEECC
Confidence 35899999999999999864
No 94
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=77.85 E-value=7.2 Score=42.69 Aligned_cols=70 Identities=17% Similarity=0.232 Sum_probs=42.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHcCCCCCCccEEEEecCCCCcHHHHHHHHHhcCC-CCC------CCCChhHHHHhHHHHH
Q psy740 250 EELCKDVFENVEKTLKDCLEKSKLALSDIHSVEIVGGSSRIPAIKGLIEKIFQK-TPS------TTLNQDEAVARGCALQ 322 (763)
Q Consensus 250 e~l~~~l~~~i~~~i~~~l~~a~~~~~~i~~V~lvGGssriP~v~~~l~~~fg~-~~~------~~~n~deaVa~GAa~~ 322 (763)
+.++.-+.+=+...|-+.++.... +++.|+++||+.+.|++.+.|++.++. .+. .+.+.-||++. |++
T Consensus 260 ~D~~aTlt~~TA~sI~~~i~~~~~---~~~~v~v~GGGa~N~~L~~~L~~~l~~~~v~~~~~~gi~~~~~EA~aF--A~L 334 (364)
T PF03702_consen 260 EDILATLTEFTAQSIADAIRRFPP---QPDEVYVCGGGARNPFLMERLQERLPGIPVKTTDELGIPPDAKEAMAF--AWL 334 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-T---T-EEEEEESGGGG-HHHHHHHHHH-TTCEEEEGGGGTS-CCCHHHHHH--HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC---CCceEEEECCCcCCHHHHHHHHhhCCCCEEecHHHcCCCHHHHHHHHH--HHH
Confidence 334444444445555555555432 278999999999999999999999964 332 23455666665 445
Q ss_pred cc
Q psy740 323 CA 324 (763)
Q Consensus 323 aa 324 (763)
|.
T Consensus 335 a~ 336 (364)
T PF03702_consen 335 AY 336 (364)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 95
>PLN03184 chloroplast Hsp70; Provisional
Probab=77.59 E-value=31 Score=41.36 Aligned_cols=64 Identities=16% Similarity=0.152 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHh
Q psy740 629 ENIFCSIQIAQKKISMFKEGDERLNHLDAAEITVVEEKVANALKWAENAQSLMNEFTDRTKDAPVPTSEIKNEMQNLNNA 708 (763)
Q Consensus 629 ~~l~~~l~~~~~~l~~~~~~~~~~~~~t~~e~~~l~~~~~e~~~Wl~~~~~~q~~~~~~~~dP~~~~~di~~k~~~l~~~ 708 (763)
..+...|..++..+..+ ...+++++.+.+.+.+++++.||+.. .. .+++.+.+.|...
T Consensus 569 N~lE~~iy~~r~~l~e~------~~~~~~eer~~l~~~l~~~e~wL~~~----d~------------~~ik~~~~~l~~~ 626 (673)
T PLN03184 569 NQADSVVYQTEKQLKEL------GDKVPADVKEKVEAKLKELKDAIASG----ST------------QKMKDAMAALNQE 626 (673)
T ss_pred HhHHHHHHHHHHHHHHH------hhhCCHHHHHHHHHHHHHHHHHHhcC----CH------------HHHHHHHHHHHHH
Confidence 44455555555555322 13578999999999999999999752 11 4777777777777
Q ss_pred hhhhhc
Q psy740 709 VNPVFS 714 (763)
Q Consensus 709 ~~~l~~ 714 (763)
+..+..
T Consensus 627 l~~l~~ 632 (673)
T PLN03184 627 VMQIGQ 632 (673)
T ss_pred HHHHHH
Confidence 777775
No 96
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=77.02 E-value=2.5 Score=39.50 Aligned_cols=24 Identities=21% Similarity=0.356 Sum_probs=20.5
Q ss_pred CCCcceEEEEcCccceEEEEEECC
Q psy740 1 MAGMSVIGIDFGNESCFIAAARAG 24 (763)
Q Consensus 1 m~~~~viGID~GTt~s~va~~~~g 24 (763)
|.+|.++|||+|+..+.+|+.++.
T Consensus 1 ~~~~~iLalD~G~kriGvAv~d~~ 24 (138)
T PRK00109 1 MPSGRILGLDVGTKRIGVAVSDPL 24 (138)
T ss_pred CCCCcEEEEEeCCCEEEEEEecCC
Confidence 457889999999999999987653
No 97
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=76.48 E-value=11 Score=41.08 Aligned_cols=67 Identities=13% Similarity=0.224 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCccEEEEecCCCCcHHHHHHHHHhcCCCCCC----CCChhHHHHhHHHHHcc
Q psy740 255 DVFENVEKTLKDCLEKSKLALSDIHSVEIVGGSSRIPAIKGLIEKIFQKTPST----TLNQDEAVARGCALQCA 324 (763)
Q Consensus 255 ~l~~~i~~~i~~~l~~a~~~~~~i~~V~lvGGssriP~v~~~l~~~fg~~~~~----~~n~deaVa~GAa~~aa 324 (763)
-+.+=+...|-+.+.... ...+.|+++||+.+.|++.+.|++.++..+.. .+++|--=|..-|+.|.
T Consensus 267 Tlt~~TA~sI~~~~~~~~---~~~~~vlv~GGGa~N~~Lm~~L~~~l~~~v~~~~~~G~~~da~EA~aFA~La~ 337 (365)
T PRK09585 267 TLTELTAASIARAVRRLP---PGPDELLVCGGGARNPTLMERLAALLPTEVATTDALGIDGDAKEALAFAWLAV 337 (365)
T ss_pred HHHHHHHHHHHHHHHhcc---CCCCEEEEECCCcchHHHHHHHHHhcCCcccCHHHcCCChhHHHHHHHHHHHH
Confidence 333334444455554332 22468999999999999999999999633221 24444444444566664
No 98
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=74.79 E-value=3 Score=38.81 Aligned_cols=21 Identities=29% Similarity=0.544 Sum_probs=18.5
Q ss_pred cceEEEEcCccceEEEEEECC
Q psy740 4 MSVIGIDFGNESCFIAAARAG 24 (763)
Q Consensus 4 ~~viGID~GTt~s~va~~~~g 24 (763)
|.++|||+|+..+.+|+.++.
T Consensus 1 mriL~lD~G~kriGiAvsd~~ 21 (135)
T PF03652_consen 1 MRILGLDYGTKRIGIAVSDPL 21 (135)
T ss_dssp -EEEEEEECSSEEEEEEEETT
T ss_pred CeEEEEEeCCCeEEEEEecCC
Confidence 679999999999999998865
No 99
>CHL00094 dnaK heat shock protein 70
Probab=74.25 E-value=18 Score=42.97 Aligned_cols=65 Identities=14% Similarity=0.151 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHh
Q psy740 629 ENIFCSIQIAQKKISMFKEGDERLNHLDAAEITVVEEKVANALKWAENAQSLMNEFTDRTKDAPVPTSEIKNEMQNLNNA 708 (763)
Q Consensus 629 ~~l~~~l~~~~~~l~~~~~~~~~~~~~t~~e~~~l~~~~~e~~~Wl~~~~~~q~~~~~~~~dP~~~~~di~~k~~~l~~~ 708 (763)
..+...|..++..+..+ ...+++++++.+...+++++.||.+. .. .+++.+.+.|++.
T Consensus 532 n~le~~i~~~~~~l~~~------~~~~~~~~~~~~~~~l~~~~~wl~~~----~~------------~~~~~~~~~l~~~ 589 (621)
T CHL00094 532 NQAESLCYQAEKQLKEL------KDKISEEKKEKIENLIKKLRQALQND----NY------------ESIKSLLEELQKA 589 (621)
T ss_pred HHhHHHHHHHHHHHHHH------hccCCHHHHHHHHHHHHHHHHHHhcC----CH------------HHHHHHHHHHHHH
Confidence 34555555555555321 13578999999999999999999863 11 4889999999999
Q ss_pred hhhhhcC
Q psy740 709 VNPVFSK 715 (763)
Q Consensus 709 ~~~l~~k 715 (763)
++++..|
T Consensus 590 ~~~~~~k 596 (621)
T CHL00094 590 LMEIGKE 596 (621)
T ss_pred HHHHHHH
Confidence 9998863
No 100
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=73.96 E-value=2.9 Score=43.13 Aligned_cols=19 Identities=26% Similarity=0.343 Sum_probs=17.0
Q ss_pred eEEEEcCccceEEEEEECC
Q psy740 6 VIGIDFGNESCFIAAARAG 24 (763)
Q Consensus 6 viGID~GTt~s~va~~~~g 24 (763)
++|||+|||++++++++..
T Consensus 2 ~lgiDiGTts~K~~l~d~~ 20 (245)
T PF00370_consen 2 YLGIDIGTTSVKAVLFDED 20 (245)
T ss_dssp EEEEEECSSEEEEEEEETT
T ss_pred EEEEEEcccceEEEEEeCC
Confidence 7999999999999999843
No 101
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=72.86 E-value=6.6 Score=41.26 Aligned_cols=46 Identities=13% Similarity=0.107 Sum_probs=38.4
Q ss_pred CCccEEEEecC-CCCcHHHHHHHHHhcC---CCCCCCCChhHHHHhHHHH
Q psy740 276 SDIHSVEIVGG-SSRIPAIKGLIEKIFQ---KTPSTTLNQDEAVARGCAL 321 (763)
Q Consensus 276 ~~i~~V~lvGG-ssriP~v~~~l~~~fg---~~~~~~~n~deaVa~GAa~ 321 (763)
..+..|+++|| -+..|.+++.+...+. .+....-|..-.+|+||++
T Consensus 229 ~~~~~IvF~Gg~L~~~~~l~~~~~~~~~~~~~~~ifp~h~~y~gAlGAaL 278 (279)
T TIGR00555 229 YNIDRIVFIGSFLRNNQLLMKVLSYATNFWSKKALFLEHEGYSGAIGALL 278 (279)
T ss_pred cCCCeEEEECCcccCCHHHHHHHHHHHhhcCceEEEECCcchHHHhhhcc
Confidence 45789999999 6678999999998873 4566677899999999986
No 102
>KOG0101|consensus
Probab=72.51 E-value=11 Score=43.89 Aligned_cols=50 Identities=18% Similarity=0.413 Sum_probs=43.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHhhhhhhcC
Q psy740 653 NHLDAAEITVVEEKVANALKWAENAQSLMNEFTDRTKDAPVPTSEIKNEMQNLNNAVNPVFSK 715 (763)
Q Consensus 653 ~~~t~~e~~~l~~~~~e~~~Wl~~~~~~q~~~~~~~~dP~~~~~di~~k~~~l~~~~~~l~~k 715 (763)
..+.+++..++.+.|+++..||+.....- ..++..|++.|+..|++++.+
T Consensus 562 ~~i~~~~~~~~~~~~~~~i~wl~~~~~~~-------------~~e~e~k~~el~~~~~p~~~~ 611 (620)
T KOG0101|consen 562 GKINEEDKQKILDKCNEVINWLDKNQLAE-------------KEEFEHKQKELELVCNPIISK 611 (620)
T ss_pred cccChhhhhhHHHHHHHHHHHhhhccccc-------------ccHHHHHHHHHHhhccHHHHh
Confidence 45889999999999999999999855433 349999999999999999987
No 103
>PRK00047 glpK glycerol kinase; Provisional
Probab=71.10 E-value=3.3 Score=47.68 Aligned_cols=24 Identities=17% Similarity=0.120 Sum_probs=19.4
Q ss_pred CCCc-ceEEEEcCccceEEEEEECC
Q psy740 1 MAGM-SVIGIDFGNESCFIAAARAG 24 (763)
Q Consensus 1 m~~~-~viGID~GTt~s~va~~~~g 24 (763)
|.|. .+||||+|||++++++++..
T Consensus 1 ~~m~~~~lgiD~GTts~Ka~l~d~~ 25 (498)
T PRK00047 1 MMMKKYILALDQGTTSSRAIIFDHD 25 (498)
T ss_pred CCccCEEEEEecCCCceEEEEECCC
Confidence 5543 48999999999999999743
No 104
>PRK02224 chromosome segregation protein; Provisional
Probab=70.00 E-value=2.4e+02 Score=34.95 Aligned_cols=114 Identities=17% Similarity=0.190 Sum_probs=57.1
Q ss_pred CCCHHHHHHHHHHHHhhhhchHHHHHHHHHhhhhHHHHHHHHHHccchHHhhccCCHHHHHHHHHHHHHHHHHHhhcCCC
Q psy740 515 GLSPEQLNAHTELEGKMIADDKLEKERIDARNCLEEYVYDLRNKLGSEEEFALYIAADDASKLSTQLDETENWLYEEGAD 594 (763)
Q Consensus 515 ~ls~~ei~~~~~~~~~~~~~D~~~~~~~ea~N~LEs~iy~~R~~L~~~~~~~~~~teeer~~l~~~l~e~~~WL~~~g~~ 594 (763)
..++.+...++..+..+..-+.......+++..++...-.++..+. .+...+.+.++..+...|...+.=+.+- .
T Consensus 145 ~~~p~~R~~ii~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~l~~~l~~~~~~l~el--~ 219 (880)
T PRK02224 145 NATPSDRQDMIDDLLQLGKLEEYRERASDARLGVERVLSDQRGSLD---QLKAQIEEKEEKDLHERLNGLESELAEL--D 219 (880)
T ss_pred cCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Confidence 4567788888888777766555555555555556666666666553 3334444444455555555555444321 1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy740 595 VNKSVYISKLDELKAIGEKIRQRKVDYEEKTKAFENIFC 633 (763)
Q Consensus 595 a~~~~~~~kl~eL~~~~~pi~~R~~E~~~rp~a~~~l~~ 633 (763)
...+.+..++..++.-...+..++.++..+-..++.+..
T Consensus 220 ~~i~~~~~~~~~l~~~l~~l~~~~~el~~~~~~l~~l~~ 258 (880)
T PRK02224 220 EEIERYEEQREQARETRDEADEVLEEHEERREELETLEA 258 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122333333444433333333444444433333333333
No 105
>KOG0104|consensus
Probab=69.48 E-value=34 Score=40.25 Aligned_cols=96 Identities=15% Similarity=0.202 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCcccC-CCCHHHHHHHHHHHHHHHHHHH
Q psy740 597 KSVYISKLDELKAIGEKIRQRKVDYEEKTKAFENIFCSIQIAQKKISMFKEGDERLN-HLDAAEITVVEEKVANALKWAE 675 (763)
Q Consensus 597 ~~~~~~kl~eL~~~~~pi~~R~~E~~~rp~a~~~l~~~l~~~~~~l~~~~~~~~~~~-~~t~~e~~~l~~~~~e~~~Wl~ 675 (763)
...|......|.. +..+=.+...|..|+..|...|..++..+.+ + .|. .-+++|...|.+.|.....||.
T Consensus 636 ~~~~~~~~~kl~d----~~~~e~~k~~re~a~N~LE~~l~e~q~~l~d----~-ey~e~at~EEk~~L~~~~~~~~~Wle 706 (902)
T KOG0104|consen 636 ENALDAAVAKLED----FVQKEKEKSEREEASNELEAFLFELQDKLDD----D-EYAEVATEEEKKILKKKVSLLMDWLE 706 (902)
T ss_pred hhHHHHHHHHHHH----HHHhhhhHHHHHHHHHHHHHHHHHHHHHhcC----c-hHhhhcCHHHHHHHHHHHHHHHHHHH
Confidence 3444444443333 3345557778888888888888877776543 2 233 3479999999999999999999
Q ss_pred HHHHhhhccCCCCCCCCcchHHHHHHHHHHHHhhhhhh
Q psy740 676 NAQSLMNEFTDRTKDAPVPTSEIKNEMQNLNNAVNPVF 713 (763)
Q Consensus 676 ~~~~~q~~~~~~~~dP~~~~~di~~k~~~l~~~~~~l~ 713 (763)
+-...+.+ .++..++..|++.++.+.
T Consensus 707 ed~~~~~t------------~~~~ek~a~L~~l~~~~~ 732 (902)
T KOG0104|consen 707 EDGSQTPT------------EMLTEKLAELKKLETSKN 732 (902)
T ss_pred hhccccch------------hHHHHHHHHHHHHHhhhh
Confidence 98843333 356666666666665544
No 106
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=66.91 E-value=5 Score=42.29 Aligned_cols=21 Identities=29% Similarity=0.360 Sum_probs=18.6
Q ss_pred cceEEEEcCccceEEEEEECC
Q psy740 4 MSVIGIDFGNESCFIAAARAG 24 (763)
Q Consensus 4 ~~viGID~GTt~s~va~~~~g 24 (763)
|..+|||+|++++++++++++
T Consensus 32 m~~~GIDiGStt~K~Vlld~~ 52 (293)
T TIGR03192 32 IITCGIDVGSVSSQAVLVCDG 52 (293)
T ss_pred cEEEEEEeCchhEEEEEEeCC
Confidence 568999999999999998755
No 107
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=66.80 E-value=4.6 Score=46.82 Aligned_cols=21 Identities=14% Similarity=0.097 Sum_probs=18.3
Q ss_pred cceEEEEcCccceEEEEEECC
Q psy740 4 MSVIGIDFGNESCFIAAARAG 24 (763)
Q Consensus 4 ~~viGID~GTt~s~va~~~~g 24 (763)
..++|||+|||++++++++..
T Consensus 3 ~~~lgID~GTts~Ka~l~d~~ 23 (520)
T PRK10939 3 SYLMALDAGTGSIRAVIFDLN 23 (520)
T ss_pred cEEEEEecCCCceEEEEECCC
Confidence 468999999999999999744
No 108
>KOG0681|consensus
Probab=66.66 E-value=36 Score=38.51 Aligned_cols=22 Identities=27% Similarity=0.220 Sum_probs=18.4
Q ss_pred CCcceEEEEcCccceEEEEEEC
Q psy740 2 AGMSVIGIDFGNESCFIAAARA 23 (763)
Q Consensus 2 ~~~~viGID~GTt~s~va~~~~ 23 (763)
++...|.||.|+..|.++|+..
T Consensus 21 ~n~~piVIDNGS~~~RaGw~ge 42 (645)
T KOG0681|consen 21 SNTIPIVIDNGSYECRAGWAGE 42 (645)
T ss_pred cCCCcEEEeCCceeEeecccCC
Confidence 4456799999999999999854
No 109
>PLN02939 transferase, transferring glycosyl groups
Probab=66.07 E-value=2.9e+02 Score=34.41 Aligned_cols=181 Identities=8% Similarity=0.017 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHhhhhchHHHHHHHHHhhhhHHHHHHHHHHccchHHhhccCCHHHHHHHHHHHHHHHHHHhhcCCCCC-
Q psy740 518 PEQLNAHTELEGKMIADDKLEKERIDARNCLEEYVYDLRNKLGSEEEFALYIAADDASKLSTQLDETENWLYEEGADVN- 596 (763)
Q Consensus 518 ~~ei~~~~~~~~~~~~~D~~~~~~~ea~N~LEs~iy~~R~~L~~~~~~~~~~teeer~~l~~~l~e~~~WL~~~g~~a~- 596 (763)
+++++.++.++.....-|+....++..+.-|++++-++..++-....-..-+.+-+.+.+-++++...+-|.--...++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (977)
T PLN02939 239 KDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVENLQDLLDRATNQVEK 318 (977)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666677777777777777778888888888888888875211111122233333455556555555543211111
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCcccCCCCHHHHHHHHHHHHHHHHH
Q psy740 597 KSVYISKLDELKAIGEKIRQ---RKVDYEEKTKAFENIFCSIQIAQKKISMFKEGDERLNHLDAAEITVVEEKVANALKW 673 (763)
Q Consensus 597 ~~~~~~kl~eL~~~~~pi~~---R~~E~~~rp~a~~~l~~~l~~~~~~l~~~~~~~~~~~~~t~~e~~~l~~~~~e~~~W 673 (763)
.-..-+.-++|++.++.+.. +..-++.++..++-+++.+...+..+...... ....++.-...|.+.+.-
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~ 391 (977)
T PLN02939 319 AALVLDQNQDLRDKVDKLEASLKEANVSKFSSYKVELLQQKLKLLEERLQASDHE-------IHSYIQLYQESIKEFQDT 391 (977)
T ss_pred HHHHhccchHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHHHhhHHH-------HHHHHHHHHHHHHHHHHH
Confidence 11112223334444443332 34445677888888877777776655432110 123344445566666666
Q ss_pred HHHHHHhhhcc---CCCCCCCCcchHHHHHHHHHH
Q psy740 674 AENAQSLMNEF---TDRTKDAPVPTSEIKNEMQNL 705 (763)
Q Consensus 674 l~~~~~~q~~~---~~~~~dP~~~~~di~~k~~~l 705 (763)
|+....++.+. .|.+..|.-.|++|.-+++.+
T Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lll~id~~ 426 (977)
T PLN02939 392 LSKLKEESKKRSLEHPADDMPSEFWSRILLLIDGW 426 (977)
T ss_pred HHHHHhhhhcccccCchhhCCHHHHHHHHHHHHHH
Confidence 77666666651 345566766777877776655
No 110
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=65.53 E-value=4.8 Score=41.63 Aligned_cols=19 Identities=26% Similarity=0.471 Sum_probs=16.9
Q ss_pred eEEEEcCccceEEEEEECC
Q psy740 6 VIGIDFGNESCFIAAARAG 24 (763)
Q Consensus 6 viGID~GTt~s~va~~~~g 24 (763)
++|||+|||+++++++++|
T Consensus 2 ~lGIDiGtts~K~vl~d~g 20 (248)
T TIGR00241 2 SLGIDSGSTTTKMVLMEDG 20 (248)
T ss_pred EEEEEcChhheEEEEEcCC
Confidence 6899999999999998744
No 111
>PRK04123 ribulokinase; Provisional
Probab=64.38 E-value=6.1 Score=46.11 Aligned_cols=19 Identities=37% Similarity=0.550 Sum_probs=17.4
Q ss_pred cceEEEEcCccceEEEEEE
Q psy740 4 MSVIGIDFGNESCFIAAAR 22 (763)
Q Consensus 4 ~~viGID~GTt~s~va~~~ 22 (763)
..++|||+|||++++++++
T Consensus 3 ~~~lgiD~GTts~Ka~l~d 21 (548)
T PRK04123 3 AYVIGLDFGTDSVRALLVD 21 (548)
T ss_pred cEEEEEecCCCceEEEEEE
Confidence 3589999999999999998
No 112
>PRK00976 hypothetical protein; Provisional
Probab=64.04 E-value=20 Score=38.39 Aligned_cols=51 Identities=18% Similarity=0.225 Sum_probs=39.1
Q ss_pred CccEEEEecCCCCcH--HHHHHHHHhcCCCCCCCCChhHHHHhHHHHHcchhcCC
Q psy740 277 DIHSVEIVGGSSRIP--AIKGLIEKIFQKTPSTTLNQDEAVARGCALQCAMLSPA 329 (763)
Q Consensus 277 ~i~~V~lvGGssriP--~v~~~l~~~fg~~~~~~~n~deaVa~GAa~~aa~ls~~ 329 (763)
|.+.|+|-||-++.+ .+.+.+++.+... ...-...+.++|||+.|-.+.+.
T Consensus 263 DPe~IVLGGGVS~~~e~~L~~~I~e~l~~~--~a~LG~dAGaiGAA~iA~~i~~G 315 (326)
T PRK00976 263 PEDNVVLAGSVGEMDEPDVSERIKELLDKK--VLVLGKESAAIGLALIARDIFNG 315 (326)
T ss_pred CCCEEEEcCccccCchhHHHHHHHHHhccc--ccccCCchHHHHHHHHHHHHhCC
Confidence 478899999999998 7888888887543 22334589999999988766544
No 113
>PRK03011 butyrate kinase; Provisional
Probab=63.77 E-value=12 Score=41.03 Aligned_cols=46 Identities=15% Similarity=0.167 Sum_probs=37.7
Q ss_pred CccEEEEecCCCCcHHHHHHHHHhcC----CCCCCCCChhHHHHhHHHHH
Q psy740 277 DIHSVEIVGGSSRIPAIKGLIEKIFQ----KTPSTTLNQDEAVARGCALQ 322 (763)
Q Consensus 277 ~i~~V~lvGGssriP~v~~~l~~~fg----~~~~~~~n~deaVa~GAa~~ 322 (763)
++|.|+|.||.+..+.+.+.|.+.+. ..+....+-++|.+.||+..
T Consensus 295 dpD~IVlgGGI~~~~~l~~~I~~~l~~~~pv~i~p~~~e~~A~a~GA~rv 344 (358)
T PRK03011 295 KVDAIVLTGGLAYSKRLVERIKERVSFIAPVIVYPGEDEMEALAEGALRV 344 (358)
T ss_pred CCCEEEEeCccccCHHHHHHHHHHHHhhCCeEEEeCCCHHHHHHHHHHHH
Confidence 68999999999999999998888763 34566677889999998753
No 114
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=63.12 E-value=18 Score=38.92 Aligned_cols=55 Identities=22% Similarity=0.328 Sum_probs=39.6
Q ss_pred CCCccEEEEecCCCCcHHHHHHHHHhcCCC---CCCCCCh----hHHHHhHHHHHcchhcCC
Q psy740 275 LSDIHSVEIVGGSSRIPAIKGLIEKIFQKT---PSTTLNQ----DEAVARGCALQCAMLSPA 329 (763)
Q Consensus 275 ~~~i~~V~lvGGssriP~v~~~l~~~fg~~---~~~~~n~----deaVa~GAa~~aa~ls~~ 329 (763)
..+.+.|+|.|-.+|+|-+.+.+.+.|+.- ....+.+ -...|+|||+.|.-+.+.
T Consensus 258 ~~~~~~IilSGr~~~~~~~~~~l~~~l~~~~~~~v~~l~~~~~~aKeaA~GaAiIA~glaGG 319 (343)
T PF07318_consen 258 VPDPDEIILSGRFSRIPEFRKKLEDRLEDYFPVKVRKLEGLARKAKEAAQGAAIIANGLAGG 319 (343)
T ss_pred cCCCCEEEEeccccccHHHHHHHHHHHHhhcccceeecccccccchhhhhhHHHHhhhhhcc
Confidence 346789999999999999998888887321 1112222 244899999999877765
No 115
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=61.34 E-value=6.4 Score=45.39 Aligned_cols=21 Identities=24% Similarity=0.177 Sum_probs=18.3
Q ss_pred ceEEEEcCccceEEEEEECCc
Q psy740 5 SVIGIDFGNESCFIAAARAGG 25 (763)
Q Consensus 5 ~viGID~GTt~s~va~~~~g~ 25 (763)
.++|||+|||++++++++..+
T Consensus 3 ~~lgiDiGTts~Ka~l~d~~G 23 (504)
T PTZ00294 3 YIGSIDQGTTSTRFIIFDEKG 23 (504)
T ss_pred EEEEEecCCCceEEEEECCCC
Confidence 689999999999999997543
No 116
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=60.28 E-value=8.5 Score=35.98 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=19.0
Q ss_pred CcceEEEEcCccceEEEEEECC
Q psy740 3 GMSVIGIDFGNESCFIAAARAG 24 (763)
Q Consensus 3 ~~~viGID~GTt~s~va~~~~g 24 (763)
+|.++||||||-.+.||+.+..
T Consensus 1 ~~~ilalD~G~KrIGvA~sd~~ 22 (141)
T COG0816 1 GMRILALDVGTKRIGVAVSDIL 22 (141)
T ss_pred CceEEEEecCCceEEEEEecCC
Confidence 4789999999999999997654
No 117
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=60.03 E-value=12 Score=33.82 Aligned_cols=20 Identities=30% Similarity=0.514 Sum_probs=16.9
Q ss_pred eEEEEcCccceEEEEEECCc
Q psy740 6 VIGIDFGNESCFIAAARAGG 25 (763)
Q Consensus 6 viGID~GTt~s~va~~~~g~ 25 (763)
+++||+|++.++++++..+.
T Consensus 1 i~~iDiGs~~~~~~i~~~~~ 20 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGS 20 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTE
T ss_pred CEEEEcCCCcEEEEEEEeCC
Confidence 68999999999999998764
No 118
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=59.79 E-value=56 Score=38.46 Aligned_cols=69 Identities=17% Similarity=0.331 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHH
Q psy740 626 KAFENIFCSIQIAQKKISMFKEGDERLNHLDAAEITVVEEKVANALKWAENAQSLMNEFTDRTKDAPVPTSEIKNEMQNL 705 (763)
Q Consensus 626 ~a~~~l~~~l~~~~~~l~~~~~~~~~~~~~t~~e~~~l~~~~~e~~~Wl~~~~~~q~~~~~~~~dP~~~~~di~~k~~~l 705 (763)
.+...+...+..++..++. . +..+++++. .+.++++..||++....-. ..++..|++.|
T Consensus 531 e~kn~lE~~i~~~r~~l~~----~--~~~~~~~~~---~~~l~~~~~wl~~~~~~~~------------~~e~~~kl~~L 589 (602)
T PF00012_consen 531 EAKNELESYIYELRDKLEE----D--KDFVSEEEK---KKKLKETSDWLEDNGEDAD------------KEEYKEKLEEL 589 (602)
T ss_dssp HHHHHHHHHHHHHHHHHTC----C--GGGSTHHHH---HHHHHHHHHHHHHHTTTSH------------HHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHh----h--hccCCHHHH---HHHHHHHHHHHHhhccCCC------------HHHHHHHHHHH
Confidence 3445555555555554322 1 345666666 7889999999999764222 47999999999
Q ss_pred HHhhhhhhcC
Q psy740 706 NNAVNPVFSK 715 (763)
Q Consensus 706 ~~~~~~l~~k 715 (763)
+..++++..+
T Consensus 590 ~~~~~~i~~r 599 (602)
T PF00012_consen 590 KKVIEPIKKR 599 (602)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998754
No 119
>PRK10331 L-fuculokinase; Provisional
Probab=59.46 E-value=7 Score=44.61 Aligned_cols=20 Identities=15% Similarity=0.189 Sum_probs=17.4
Q ss_pred ceEEEEcCccceEEEEEECC
Q psy740 5 SVIGIDFGNESCFIAAARAG 24 (763)
Q Consensus 5 ~viGID~GTt~s~va~~~~g 24 (763)
.++|||+|||++++++++..
T Consensus 3 ~~lgID~GTt~~Ka~l~d~~ 22 (470)
T PRK10331 3 VILVLDCGATNVRAIAVDRQ 22 (470)
T ss_pred eEEEEecCCCceEEEEEcCC
Confidence 47999999999999999743
No 120
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=58.31 E-value=22 Score=42.69 Aligned_cols=48 Identities=21% Similarity=0.177 Sum_probs=38.1
Q ss_pred CccEEEEecCCCCcHHHHHHHHHhcC---CCCCCC---CChhHHHHhHHHHHcc
Q psy740 277 DIHSVEIVGGSSRIPAIKGLIEKIFQ---KTPSTT---LNQDEAVARGCALQCA 324 (763)
Q Consensus 277 ~i~~V~lvGGssriP~v~~~l~~~fg---~~~~~~---~n~deaVa~GAa~~aa 324 (763)
.++.|+|.||..+...+.+.|.+.++ .++..+ .--|.++++|.|+.||
T Consensus 658 g~~~VvLSGGVfqN~~L~~~L~~~L~~~g~~v~~p~~~p~nDgGislGQa~~a~ 711 (711)
T TIGR00143 658 GIHKIVISGGVFYNRLLLERLAKYLKGLGFQFLFHRHLPPGDGGISLGQAVAAA 711 (711)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHhCCCEEEccCCCCCCHHHHHHHHHHHhC
Confidence 47789999999999999999998774 333222 3459999999998875
No 121
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=58.15 E-value=8.6 Score=44.72 Aligned_cols=18 Identities=39% Similarity=0.466 Sum_probs=16.9
Q ss_pred ceEEEEcCccceEEEEEE
Q psy740 5 SVIGIDFGNESCFIAAAR 22 (763)
Q Consensus 5 ~viGID~GTt~s~va~~~ 22 (763)
.++|||+|||++++++++
T Consensus 2 ~~lgiD~GTss~Ka~l~d 19 (536)
T TIGR01234 2 YAIGVDFGTLSGRALAVD 19 (536)
T ss_pred eEEEEecCCCceEEEEEE
Confidence 489999999999999998
No 122
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=58.00 E-value=7.7 Score=44.22 Aligned_cols=20 Identities=15% Similarity=0.159 Sum_probs=17.5
Q ss_pred ceEEEEcCccceEEEEEECC
Q psy740 5 SVIGIDFGNESCFIAAARAG 24 (763)
Q Consensus 5 ~viGID~GTt~s~va~~~~g 24 (763)
.++|||+|||++++++++..
T Consensus 2 ~ilgiD~GTss~K~~l~d~~ 21 (465)
T TIGR02628 2 VILVLDCGATNLRAIAINRQ 21 (465)
T ss_pred eEEEEecCCCcEEEEEEcCC
Confidence 37999999999999999754
No 123
>KOG4603|consensus
Probab=57.34 E-value=1.6e+02 Score=28.19 Aligned_cols=77 Identities=12% Similarity=0.121 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh------hhhHHHHHHHHHHHHHHHHHHHhhcCCcccCCCCHHHHHHHHHHHHHH
Q psy740 597 KSVYISKLDELKAIGEKIRQRKVDYE------EKTKAFENIFCSIQIAQKKISMFKEGDERLNHLDAAEITVVEEKVANA 670 (763)
Q Consensus 597 ~~~~~~kl~eL~~~~~pi~~R~~E~~------~rp~a~~~l~~~l~~~~~~l~~~~~~~~~~~~~t~~e~~~l~~~~~e~ 670 (763)
...|.+|+..|+..+..+..-+.+.. ...+.+..|++.....+..|..+..+ ..|+|.+|++.+.+..+..
T Consensus 88 i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g---~~~vtpedk~~v~~~y~~~ 164 (201)
T KOG4603|consen 88 IVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKAG---TNHVTPEDKEQVYREYQKY 164 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHh---cccCCHHHHHHHHHHHHHH
Confidence 45677778888887777765554433 22344445555555555555555543 3799999999998887776
Q ss_pred HHHHHH
Q psy740 671 LKWAEN 676 (763)
Q Consensus 671 ~~Wl~~ 676 (763)
-.-|..
T Consensus 165 ~~~wrk 170 (201)
T KOG4603|consen 165 CKEWRK 170 (201)
T ss_pred HHHHHH
Confidence 544443
No 124
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=57.18 E-value=12 Score=40.60 Aligned_cols=25 Identities=28% Similarity=0.428 Sum_probs=22.3
Q ss_pred CCCcceEEEEcCccceEEEEEECCc
Q psy740 1 MAGMSVIGIDFGNESCFIAAARAGG 25 (763)
Q Consensus 1 m~~~~viGID~GTt~s~va~~~~g~ 25 (763)
|+.|..+|||.|+|.+++.+..++.
T Consensus 132 ~~~~~~LGID~GSTtTK~VLm~d~~ 156 (396)
T COG1924 132 YQGMYTLGIDSGSTTTKAVLMEDGK 156 (396)
T ss_pred hcCcEEEEEecCCcceeEEEEeCCC
Confidence 4568899999999999999998886
No 125
>PRK15027 xylulokinase; Provisional
Probab=56.96 E-value=7.8 Score=44.44 Aligned_cols=19 Identities=26% Similarity=0.419 Sum_probs=17.0
Q ss_pred eEEEEcCccceEEEEEECC
Q psy740 6 VIGIDFGNESCFIAAARAG 24 (763)
Q Consensus 6 viGID~GTt~s~va~~~~g 24 (763)
+||||+|||++++++++..
T Consensus 2 ~lgID~GTts~Ka~l~d~~ 20 (484)
T PRK15027 2 YIGIDLGTSGVKVILLNEQ 20 (484)
T ss_pred EEEEEecccceEEEEEcCC
Confidence 7899999999999999743
No 126
>PRK13317 pantothenate kinase; Provisional
Probab=56.79 E-value=12 Score=39.33 Aligned_cols=23 Identities=26% Similarity=0.123 Sum_probs=19.2
Q ss_pred CcceEEEEcCccceEEEEEECCc
Q psy740 3 GMSVIGIDFGNESCFIAAARAGG 25 (763)
Q Consensus 3 ~~~viGID~GTt~s~va~~~~g~ 25 (763)
|+..||||+|+|.+++++...++
T Consensus 1 m~~~iGIDiGstt~K~v~~~~~~ 23 (277)
T PRK13317 1 MEMKIGIDAGGTLTKIVYLEEKK 23 (277)
T ss_pred CCceEEEEeCcccEEEEEEcCCC
Confidence 45789999999999999987543
No 127
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=54.03 E-value=11 Score=43.94 Aligned_cols=20 Identities=25% Similarity=0.348 Sum_probs=17.3
Q ss_pred ceEEEEcCccceEEEEEECC
Q psy740 5 SVIGIDFGNESCFIAAARAG 24 (763)
Q Consensus 5 ~viGID~GTt~s~va~~~~g 24 (763)
.++|||+|||++++++++..
T Consensus 1 ~~lgID~GTts~Ka~l~d~~ 20 (541)
T TIGR01315 1 HYIGVDVGTGSARACIIDST 20 (541)
T ss_pred CEEEEEecCcCEEEEEEcCC
Confidence 37999999999999999743
No 128
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=53.67 E-value=9.7 Score=36.68 Aligned_cols=20 Identities=25% Similarity=0.262 Sum_probs=18.0
Q ss_pred CcceEEEEcCccceEEEEEE
Q psy740 3 GMSVIGIDFGNESCFIAAAR 22 (763)
Q Consensus 3 ~~~viGID~GTt~s~va~~~ 22 (763)
+|.++|||-|++++..|++.
T Consensus 1 ~m~iLGIDPgl~~tG~avi~ 20 (164)
T PRK00039 1 MMRILGIDPGLRRTGYGVIE 20 (164)
T ss_pred CCEEEEEccccCceeEEEEE
Confidence 47899999999999999875
No 129
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=53.50 E-value=11 Score=43.54 Aligned_cols=19 Identities=26% Similarity=0.405 Sum_probs=17.0
Q ss_pred eEEEEcCccceEEEEEECC
Q psy740 6 VIGIDFGNESCFIAAARAG 24 (763)
Q Consensus 6 viGID~GTt~s~va~~~~g 24 (763)
++|||+|||++++++++..
T Consensus 2 ~lgiDiGtt~~K~~l~d~~ 20 (505)
T TIGR01314 2 MIGVDIGTTSTKAVLFEEN 20 (505)
T ss_pred EEEEeccccceEEEEEcCC
Confidence 7999999999999999754
No 130
>PLN02295 glycerol kinase
Probab=53.28 E-value=9.8 Score=43.96 Aligned_cols=18 Identities=28% Similarity=0.137 Sum_probs=16.6
Q ss_pred eEEEEcCccceEEEEEEC
Q psy740 6 VIGIDFGNESCFIAAARA 23 (763)
Q Consensus 6 viGID~GTt~s~va~~~~ 23 (763)
+||||+|||++++++++.
T Consensus 2 vlgID~GTts~Ka~l~d~ 19 (512)
T PLN02295 2 VGAIDQGTTSTRFIIYDR 19 (512)
T ss_pred EEEEecCCCceEEEEECC
Confidence 799999999999999974
No 131
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=52.55 E-value=12 Score=38.80 Aligned_cols=50 Identities=26% Similarity=0.282 Sum_probs=36.5
Q ss_pred CCCCccEEEEecCCCCcHHHHHHHHHhcC--------CCCCCCCChhHHHHhHHHHHc
Q psy740 274 ALSDIHSVEIVGGSSRIPAIKGLIEKIFQ--------KTPSTTLNQDEAVARGCALQC 323 (763)
Q Consensus 274 ~~~~i~~V~lvGGssriP~v~~~l~~~fg--------~~~~~~~n~deaVa~GAa~~a 323 (763)
+..+|+.|+|||||+.=.-|-+++.+.+. ..+.-..-|..|||.|.++..
T Consensus 272 niR~i~fVVlVGGSALDFEIp~~vtdaLs~y~iVaGRgNIrG~eGPRNAVATGLvlsy 329 (332)
T PF08841_consen 272 NIRDIPFVVLVGGSALDFEIPQMVTDALSHYGIVAGRGNIRGVEGPRNAVATGLVLSY 329 (332)
T ss_dssp SCCC--EEEEESGGGGSSSHHHHHHHHHCTTT-EEEE--GGGTSTTSTHHHHHHHHHH
T ss_pred CcccCceEEEecCchhhhhhHHHHHHHHhhCcceeeccccccccCchHHHHHHHHHhh
Confidence 35789999999999988878888887762 134455678999999998743
No 132
>PLN02377 3-ketoacyl-CoA synthase
Probab=52.02 E-value=30 Score=39.68 Aligned_cols=72 Identities=13% Similarity=0.113 Sum_probs=49.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHcCCCCCCccEEEE-ecCCCCcHHHHHHHHHhcCCC---CCCCCChhHHHHhHHHH
Q psy740 250 EELCKDVFENVEKTLKDCLEKSKLALSDIHSVEI-VGGSSRIPAIKGLIEKIFQKT---PSTTLNQDEAVARGCAL 321 (763)
Q Consensus 250 e~l~~~l~~~i~~~i~~~l~~a~~~~~~i~~V~l-vGGssriP~v~~~l~~~fg~~---~~~~~n~deaVa~GAa~ 321 (763)
+...+....-+...++++|+++|++++|||.|++ +.|....|.+-.+|.+.+|.. ....++..-|.+...++
T Consensus 166 ~~~~~ea~~l~~~A~~~aL~kaGi~p~dID~LVv~cS~~~~~PSlaa~V~~~LGlr~~v~afdL~gmGCsggl~aL 241 (502)
T PLN02377 166 AAAREEAEQVMFGALDNLFANTNVNPKDIGILVVNCSLFNPTPSLSAMIVNKYKLRGNIRSFNLGGMGCSAGVIAV 241 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCcHHHHHHHHhCCCCCCeEEecccchhhHHHHHH
Confidence 3333444445567788999999999999999977 444446899999999999864 23445544454444444
No 133
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=51.01 E-value=1.4e+02 Score=35.30 Aligned_cols=71 Identities=13% Similarity=0.178 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHhhcCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHH-HHHh
Q psy740 630 NIFCSIQIAQKKISMFKEGDERLNHLDAAEITVVEEKVANALKWAENAQSLMNEFTDRTKDAPVPTSEIKNEMQN-LNNA 708 (763)
Q Consensus 630 ~l~~~l~~~~~~l~~~~~~~~~~~~~t~~e~~~l~~~~~e~~~Wl~~~~~~q~~~~~~~~dP~~~~~di~~k~~~-l~~~ 708 (763)
.+...+..++..+..+ -.+++.++.+.+...+++.+.||+.. +. . .--=...++...++. |++.
T Consensus 513 ~~~~~~~~~~~~~~~~------~~~l~~~~~~~i~~~~~~~~~~l~~~----~~-~----~~~~~~~~~~~~~~~~~~~~ 577 (595)
T PRK01433 513 EAEALIFNIERAIAEL------TTLLSESEISIINSLLDNIKEAVHAR----DI-I----LINNSIKEFKSKIKKSMDTK 577 (595)
T ss_pred HHHHHHHHHHHHHHHh------hccCCHHHHHHHHHHHHHHHHHHhcC----CH-H----HHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555332 13578889999999999999999642 11 0 000012345555555 5556
Q ss_pred hhhhhcC
Q psy740 709 VNPVFSK 715 (763)
Q Consensus 709 ~~~l~~k 715 (763)
|+++++|
T Consensus 578 ~~~~~~k 584 (595)
T PRK01433 578 LNIIIND 584 (595)
T ss_pred hhHHHHH
Confidence 6666654
No 134
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=50.70 E-value=1e+02 Score=36.58 Aligned_cols=63 Identities=16% Similarity=0.169 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHhh
Q psy740 630 NIFCSIQIAQKKISMFKEGDERLNHLDAAEITVVEEKVANALKWAENAQSLMNEFTDRTKDAPVPTSEIKNEMQNLNNAV 709 (763)
Q Consensus 630 ~l~~~l~~~~~~l~~~~~~~~~~~~~t~~e~~~l~~~~~e~~~Wl~~~~~~q~~~~~~~~dP~~~~~di~~k~~~l~~~~ 709 (763)
.+...|..++..+... ...++.++.+.+...+++.+.||+.. +. .+++.+.+.|+..+
T Consensus 535 ~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~~~~l~~~----d~------------~~~~~~~~~l~~~~ 592 (616)
T PRK05183 535 EAERVLEALQAALAAD------GDLLSAAERAAIDAAMAALREVAQGD----DA------------DAIEAAIKALDKAT 592 (616)
T ss_pred HHHHHHHHHHHHHHHh------hccCCHHHHHHHHHHHHHHHHHHhcC----CH------------HHHHHHHHHHHHHH
Confidence 3444455555544321 13478899999999999999999742 32 58888999999999
Q ss_pred hhhhc
Q psy740 710 NPVFS 714 (763)
Q Consensus 710 ~~l~~ 714 (763)
..+..
T Consensus 593 ~~~~~ 597 (616)
T PRK05183 593 QEFAA 597 (616)
T ss_pred HHHHH
Confidence 88885
No 135
>PRK09604 UGMP family protein; Validated
Probab=50.55 E-value=29 Score=37.57 Aligned_cols=60 Identities=12% Similarity=0.108 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHcCCCCCCccEEEEecCCCCcHHHHHHHHHhc---CCCCCCCC---ChhHHHHhHHHHHc
Q psy740 259 NVEKTLKDCLEKSKLALSDIHSVEIVGGSSRIPAIKGLIEKIF---QKTPSTTL---NQDEAVARGCALQC 323 (763)
Q Consensus 259 ~i~~~i~~~l~~a~~~~~~i~~V~lvGGssriP~v~~~l~~~f---g~~~~~~~---n~deaVa~GAa~~a 323 (763)
-+.+.++++++.. +++.|+|.||.....++++.|.+.+ |.++..+. --|.++++|+|=+-
T Consensus 241 ~l~~~~~~~~~~~-----~~~~lvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~~p~~D~gisIg~ag~~ 306 (332)
T PRK09604 241 VLVIKTKRALKQT-----GVKTLVVAGGVAANSGLRERLAELAKKRGIEVFIPPLKLCTDNAAMIAAAGYE 306 (332)
T ss_pred HHHHHHHHHHHHh-----CCCeEEEcChHHHHHHHHHHHHHHHHHCCCEEECCCCCCCcHHHHHHHHHHHH
Confidence 3344444554433 4778999999999999999999987 44433332 45899999998433
No 136
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=50.20 E-value=12 Score=43.09 Aligned_cols=20 Identities=20% Similarity=0.207 Sum_probs=17.4
Q ss_pred ceEEEEcCccceEEEEEECC
Q psy740 5 SVIGIDFGNESCFIAAARAG 24 (763)
Q Consensus 5 ~viGID~GTt~s~va~~~~g 24 (763)
.+||||+|||++++++++..
T Consensus 2 ~~lgiDiGtt~iKa~l~d~~ 21 (493)
T TIGR01311 2 YILAIDQGTTSSRAIVFDKD 21 (493)
T ss_pred eEEEEecCCCceEEEEECCC
Confidence 47999999999999999743
No 137
>COG4457 SrfB Uncharacterized protein conserved in bacteria, putative virulence factor [Function unknown]
Probab=50.17 E-value=50 Score=38.32 Aligned_cols=82 Identities=18% Similarity=0.219 Sum_probs=52.8
Q ss_pred cEEEeeHHHHHHHhHHH---HHHHHHHHHHHHHHcCCCCCCccEEEEecCCCCcHHHHHHHHHhcCCCCC----------
Q psy740 240 VKGEMCRSEMEELCKDV---FENVEKTLKDCLEKSKLALSDIHSVEIVGGSSRIPAIKGLIEKIFQKTPS---------- 306 (763)
Q Consensus 240 ~~~~itr~~fe~l~~~l---~~~i~~~i~~~l~~a~~~~~~i~~V~lvGGssriP~v~~~l~~~fg~~~~---------- 306 (763)
+-+.|.-+++++.+-.. +......+-.++.. -+.|-++|+|--||+|.||..++...+.++.
T Consensus 743 ~pl~i~~~ql~e~~ls~~~~i~~~f~al~EaIn~-----y~cDVlLlTGRPsrlPgvqalfr~~~pvp~~rilpl~~Yrv 817 (1014)
T COG4457 743 VPLAIDLSQLHECFLSGDYDITGVFDALCEAINH-----YDCDVLLLTGRPSRLPGVQALFRHLQPVPVNRILPLDDYRV 817 (1014)
T ss_pred cceeccHHHHHHHHhhCcccccchHHHHHHHHhh-----hcccEEEEcCCcccCccHHHHHhhcCCCCCCceEeccceec
Confidence 34566667776654322 22222333333332 3468899999999999999999988653321
Q ss_pred ----------CCCChhHHHHhHHHHHcchh
Q psy740 307 ----------TTLNQDEAVARGCALQCAML 326 (763)
Q Consensus 307 ----------~~~n~deaVa~GAa~~aa~l 326 (763)
+--||-..+|.||-+.+-.+
T Consensus 818 g~WYPF~k~grIddPKtTAaVGAMLC~Lsl 847 (1014)
T COG4457 818 GTWYPFRKQGRIDDPKTTAAVGAMLCALSL 847 (1014)
T ss_pred cceecccccCcCCCcchHHHHHHHHHHHHh
Confidence 22489999999998776443
No 138
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=49.38 E-value=20 Score=34.05 Aligned_cols=17 Identities=24% Similarity=0.393 Sum_probs=15.7
Q ss_pred eEEEEcCccceEEEEEE
Q psy740 6 VIGIDFGNESCFIAAAR 22 (763)
Q Consensus 6 viGID~GTt~s~va~~~ 22 (763)
|+|||.|++++..|+++
T Consensus 2 ILGIDPGl~~~G~av~~ 18 (154)
T cd00529 2 ILGIDPGSRNTGYGVIE 18 (154)
T ss_pred EEEEccCcCceEEEEEE
Confidence 79999999999999875
No 139
>PF02543 CmcH_NodU: Carbamoyltransferase; InterPro: IPR003696 The putative O-carbamoyltransferases (O-Cases) encoded by the nodU genes of Rhizobium fredii and Bradyrhizobium japonicum are involved in the synthesis of nodulation factors []. The cmcH genes of Nocardia lactamdurans and Streptomyces clavuligerus encode a functional 3'-hydroxymethylcephem O-carbamoyltransferase 2.1.3.7 from EC for cephamycin biosynthesis that shows significant similarity to the O-carbamoyltransferases [].; GO: 0003824 catalytic activity, 0009058 biosynthetic process; PDB: 3VES_A 3VER_A 3VEN_A 3VF2_A 3VEX_A 3VEW_A 3VET_A 3VEO_A 3VEZ_A 3VF4_A.
Probab=48.93 E-value=44 Score=36.67 Aligned_cols=81 Identities=17% Similarity=0.149 Sum_probs=55.2
Q ss_pred EeeHHHHHHHhHHHHHH-HHHHHHHHHHHcCCCCCCccE-EEEecCCCCcHHHHHHHHHhcCCC-CC-CCCChhHHHHhH
Q psy740 243 EMCRSEMEELCKDVFEN-VEKTLKDCLEKSKLALSDIHS-VEIVGGSSRIPAIKGLIEKIFQKT-PS-TTLNQDEAVARG 318 (763)
Q Consensus 243 ~itr~~fe~l~~~l~~~-i~~~i~~~l~~a~~~~~~i~~-V~lvGGssriP~v~~~l~~~fg~~-~~-~~~n~deaVa~G 318 (763)
.-.+.++-..+|..+++ +...++.++++.+ ++. |.|.||..-.-..-..|.+..+.+ +. .+.-.|..+|+|
T Consensus 132 ~~~~~dlAa~~Q~~~E~~v~~~~~~~~~~~g-----~~~~L~laGGvaLN~~~N~~l~~~~~~~~v~V~Pa~gD~G~aiG 206 (360)
T PF02543_consen 132 TQRHADLAASAQKVLEEIVLHLVRHLLERTG-----IDNNLCLAGGVALNCKANGRLLEEPGFDNVFVPPAAGDAGLAIG 206 (360)
T ss_dssp ESS-HHHHHHHHHHHHHHHHHHHHHHHHHHT-------SEEEEESGGGG-HHHHHHHHTSTT-SEEE--TTTSGGGHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCeEEEechHHHHHHHHHHHHhcCCCCeEEECCCCCCcchHHH
Confidence 45567777777776655 4566777777776 455 999999998888888888875432 33 334559999999
Q ss_pred HHHHcchhcC
Q psy740 319 CALQCAMLSP 328 (763)
Q Consensus 319 Aa~~aa~ls~ 328 (763)
||+++.....
T Consensus 207 aA~~~~~~~~ 216 (360)
T PF02543_consen 207 AALYAWHELG 216 (360)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHhc
Confidence 9999975543
No 140
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=48.79 E-value=33 Score=37.97 Aligned_cols=19 Identities=26% Similarity=0.347 Sum_probs=17.1
Q ss_pred cceEEEEcCccceEEEEEE
Q psy740 4 MSVIGIDFGNESCFIAAAR 22 (763)
Q Consensus 4 ~~viGID~GTt~s~va~~~ 22 (763)
..++.||||.||.+||++.
T Consensus 75 g~~LaiD~GGTnlRvc~V~ 93 (466)
T COG5026 75 GSVLAIDLGGTNLRVCLVV 93 (466)
T ss_pred CCEEEEecCCceEEEEEEE
Confidence 4689999999999999875
No 141
>KOG0994|consensus
Probab=48.60 E-value=6.6e+02 Score=31.70 Aligned_cols=21 Identities=14% Similarity=0.210 Sum_probs=14.3
Q ss_pred HHHHhhhhHHHHHHHHHHccc
Q psy740 541 RIDARNCLEEYVYDLRNKLGS 561 (763)
Q Consensus 541 ~~ea~N~LEs~iy~~R~~L~~ 561 (763)
.+++.-+|+.+|-.+|+.|.+
T Consensus 1466 ~~~s~~el~~Li~~v~~Flt~ 1486 (1758)
T KOG0994|consen 1466 MEESNRELRNLIQQVRDFLTQ 1486 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 344556677777788887764
No 142
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=48.10 E-value=15 Score=40.32 Aligned_cols=21 Identities=24% Similarity=0.446 Sum_probs=18.7
Q ss_pred ceEEEEcCccceEEEEEECCc
Q psy740 5 SVIGIDFGNESCFIAAARAGG 25 (763)
Q Consensus 5 ~viGID~GTt~s~va~~~~g~ 25 (763)
.++|||+|+|.+++.+++.++
T Consensus 3 y~lGIDIGSTsTKaVVmd~~g 23 (432)
T TIGR02259 3 CFVGIDLGSTTTKAVLMDDKG 23 (432)
T ss_pred eEEEEEcCchhEEEEEEcCCC
Confidence 589999999999999998764
No 143
>PF02801 Ketoacyl-synt_C: Beta-ketoacyl synthase, C-terminal domain; InterPro: IPR014031 Beta-ketoacyl-ACP synthase 2.3.1.41 from EC (KAS) [] is the enzyme that catalyzes the condensation of malonyl-ACP with the growing fatty acid chain. It is found as a component of a number of enzymatic systems, including fatty acid synthetase (FAS), which catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH; the multi-functional 6-methysalicylic acid synthase (MSAS) from Penicillium patulum [], which is involved in the biosynthesis of a polyketide antibiotic; polyketide antibiotic synthase enzyme systems; Emericella nidulans multifunctional protein Wa, which is involved in the biosynthesis of conidial green pigment; Rhizobium nodulation protein nodE, which probably acts as a beta-ketoacyl synthase in the synthesis of the nodulation Nod factor fatty acyl chain; and yeast mitochondrial protein CEM1. The condensation reaction is a two step process, first the acyl component of an activated acyl primer is transferred to a cysteine residue of the enzyme and is then condensed with an activated malonyl donor with the concomitant release of carbon dioxide. This entry represents the C-terminal domain of beta-ketoacyl-ACP synthases. The active site is contained in a cleft betweeen N- and C-terminal domains, with residues from both domains contributing to substrate binding and catalysis [].; PDB: 2UV8_B 3HMJ_A 2VKZ_C 4EWG_A 1TQY_H 1E5M_A 1J3N_B 2VZ8_A 2VZ9_B 3O04_A ....
Probab=47.17 E-value=23 Score=31.92 Aligned_cols=47 Identities=17% Similarity=0.327 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccEEEEecCCCCc--HHHHHHHHHhcCC
Q psy740 257 FENVEKTLKDCLEKSKLALSDIHSVEIVGGSSRI--PAIKGLIEKIFQK 303 (763)
Q Consensus 257 ~~~i~~~i~~~l~~a~~~~~~i~~V~lvGGssri--P~v~~~l~~~fg~ 303 (763)
-..+...|+++|+++++.+++|+.|+.-|-++.. +.=...|.+.|+.
T Consensus 24 ~~~~~~~i~~al~~agi~~~~I~~i~~hg~Gt~~~D~~E~~ai~~~~~~ 72 (119)
T PF02801_consen 24 GAALARAIRRALADAGISPEDIDYIEAHGTGTPLGDAAEAEAIARVFGD 72 (119)
T ss_dssp HHHHHHHHHHHHHHHTS-GGGEEEEE----SSHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHhhhccccccceeeeeeccccccchhhhhhhhhhhhcc
Confidence 3455677999999999999999999999988876 4444567888853
No 144
>PRK13318 pantothenate kinase; Reviewed
Probab=46.33 E-value=19 Score=37.46 Aligned_cols=47 Identities=13% Similarity=0.220 Sum_probs=27.9
Q ss_pred eeHHHHHHHhHHHHHHHHHHHHHHHHHcCCCCCCccEEEEecCCCCc
Q psy740 244 MCRSEMEELCKDVFENVEKTLKDCLEKSKLALSDIHSVEIVGGSSRI 290 (763)
Q Consensus 244 itr~~fe~l~~~l~~~i~~~i~~~l~~a~~~~~~i~~V~lvGGssri 290 (763)
+-++.-+.+...++.-....|+.++++..-....--.|+++||.++.
T Consensus 181 ~g~~T~~ai~~G~~~~~~~~i~~~~~~~~~~~~~~~~vi~TGG~a~~ 227 (258)
T PRK13318 181 IGKNTVEAMQSGIYYGYVGLVEGIVKRIKEELGKDPKVIATGGLAPL 227 (258)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCchHH
Confidence 44566666666666666666666665432111111369999999643
No 145
>PRK13321 pantothenate kinase; Reviewed
Probab=45.87 E-value=20 Score=37.35 Aligned_cols=20 Identities=20% Similarity=0.272 Sum_probs=17.8
Q ss_pred eEEEEcCccceEEEEEECCc
Q psy740 6 VIGIDFGNESCFIAAARAGG 25 (763)
Q Consensus 6 viGID~GTt~s~va~~~~g~ 25 (763)
+++||+|+|++++|++.++.
T Consensus 2 iL~IDIGnT~ik~gl~~~~~ 21 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFDGDR 21 (256)
T ss_pred EEEEEECCCeEEEEEEECCE
Confidence 68999999999999998663
No 146
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=45.86 E-value=24 Score=36.76 Aligned_cols=18 Identities=22% Similarity=0.279 Sum_probs=16.4
Q ss_pred eEEEEcCccceEEEEEEC
Q psy740 6 VIGIDFGNESCFIAAARA 23 (763)
Q Consensus 6 viGID~GTt~s~va~~~~ 23 (763)
++|||+|++.+++.++++
T Consensus 3 ~~GIDiGStttK~Vlid~ 20 (262)
T TIGR02261 3 TAGIDIGTGAIKTVLFEV 20 (262)
T ss_pred EEEEEcCcccEEEEEEec
Confidence 689999999999999983
No 147
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=45.43 E-value=12 Score=38.09 Aligned_cols=40 Identities=13% Similarity=0.137 Sum_probs=25.8
Q ss_pred HhHHHHHHHHHHHHHHHHHcCCCCCCccEEEEecCCCCcHHHHHHHH
Q psy740 252 LCKDVFENVEKTLKDCLEKSKLALSDIHSVEIVGGSSRIPAIKGLIE 298 (763)
Q Consensus 252 l~~~l~~~i~~~i~~~l~~a~~~~~~i~~V~lvGGssriP~v~~~l~ 298 (763)
+-..++.++.+-|....++.|+ +.|+.+|=+ =..+|++..
T Consensus 258 ~~~~~l~~l~e~I~~~a~r~gL-----~~Vv~~GlG--efLi~~A~~ 297 (330)
T COG1548 258 AYNALLELLAENIEEKAKRYGL-----NTVVATGLG--EFLIQEACK 297 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHcCh-----hhhhhccch--HHHHHHHHH
Confidence 3345667777777777777764 577777766 445555554
No 148
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=44.20 E-value=2.3e+02 Score=27.28 Aligned_cols=91 Identities=14% Similarity=0.183 Sum_probs=53.0
Q ss_pred cCCHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhh------hhHHHHHHHHHHHHHHHH
Q psy740 568 YIAADDASKLSTQLDETENWLYEEGADVNKSVYISKLDELKAIGEKIRQRKVDYEE------KTKAFENIFCSIQIAQKK 641 (763)
Q Consensus 568 ~~teeer~~l~~~l~e~~~WL~~~g~~a~~~~~~~kl~eL~~~~~pi~~R~~E~~~------rp~a~~~l~~~l~~~~~~ 641 (763)
..++++...+...+.+.. +.+.+|+.-...+...+..... ....+..|..-+......
T Consensus 68 ~~s~eel~~ld~ei~~L~----------------~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~k 131 (169)
T PF07106_consen 68 VPSPEELAELDAEIKELR----------------EELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEK 131 (169)
T ss_pred CCCchhHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 345666655555554444 3333344444444333333333 345566667777777777
Q ss_pred HHHhhcCCcccCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy740 642 ISMFKEGDERLNHLDAAEITVVEEKVANALKWAENA 677 (763)
Q Consensus 642 l~~~~~~~~~~~~~t~~e~~~l~~~~~e~~~Wl~~~ 677 (763)
|..+..+ ...++.+|+..+.+........|...
T Consensus 132 L~~l~~~---~~~vs~ee~~~~~~~~~~~~k~w~kR 164 (169)
T PF07106_consen 132 LEKLRSG---SKPVSPEEKEKLEKEYKKWRKEWKKR 164 (169)
T ss_pred HHHHHhC---CCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 7666653 34589999999988877766655543
No 149
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=43.94 E-value=85 Score=35.44 Aligned_cols=41 Identities=24% Similarity=0.382 Sum_probs=26.5
Q ss_pred eEEEEcCccceEEEEEECCceeEEcCCCCCccccEEEEeeCCceEE
Q psy740 6 VIGIDFGNESCFIAAARAGGIETIANDYSLRATPSCVAFSDRNRIL 51 (763)
Q Consensus 6 viGID~GTt~s~va~~~~g~~~iv~n~~~~r~~PS~V~~~~~~~~~ 51 (763)
-+|||+|||.+.+-+.+ -.+.|..+....|-+ .+.+++.+|
T Consensus 8 SVGIDIGTsTTqlvfSr----l~l~n~a~~~~vpr~-~I~dkev~y 48 (475)
T PRK10719 8 SVGIDIGTTTTQVIFSR----LELENRASVFQVPRI-EIIDKEIIY 48 (475)
T ss_pred EEEEeccCceEEEEEEE----EEEecccccccCceE-EEeeeEEEE
Confidence 58999999999987764 244555555555553 444454444
No 150
>PRK13410 molecular chaperone DnaK; Provisional
Probab=43.70 E-value=1.5e+02 Score=35.55 Aligned_cols=24 Identities=13% Similarity=0.086 Sum_probs=19.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
Q psy740 653 NHLDAAEITVVEEKVANALKWAEN 676 (763)
Q Consensus 653 ~~~t~~e~~~l~~~~~e~~~Wl~~ 676 (763)
..+++++.+.+...+++++.||.+
T Consensus 554 ~~~~~~~~~~~~~~l~~~~~wL~~ 577 (668)
T PRK13410 554 PYFAERQRRAVESAMRDVQDSLEQ 577 (668)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhc
Confidence 456788888888888888888875
No 151
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=43.66 E-value=38 Score=36.39 Aligned_cols=57 Identities=18% Similarity=0.246 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHcCCCCCCccEEEEecCCCCcHHHHHHHHHhc---CCCCCCC---CChhHHHHhHHH
Q psy740 259 NVEKTLKDCLEKSKLALSDIHSVEIVGGSSRIPAIKGLIEKIF---QKTPSTT---LNQDEAVARGCA 320 (763)
Q Consensus 259 ~i~~~i~~~l~~a~~~~~~i~~V~lvGGssriP~v~~~l~~~f---g~~~~~~---~n~deaVa~GAa 320 (763)
-+.+.++++++.. .++.|.|.||.....++.+.|.+.+ |.++..+ .--|.+++.|+|
T Consensus 246 ~l~~~~~~~~~~~-----~~~~v~lsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~p~~D~Gi~Ig~a 308 (314)
T TIGR03723 246 VLVEKTKRALKKT-----GLKTLVVAGGVAANSRLRERLEELAEKAGLEVFIPPLELCTDNAAMIAAA 308 (314)
T ss_pred HHHHHHHHHHHHh-----CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCCCCChHHHHHHHH
Confidence 3344555555443 4678999999999999999999987 4443322 245888999987
No 152
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=43.47 E-value=20 Score=39.54 Aligned_cols=21 Identities=19% Similarity=0.224 Sum_probs=18.2
Q ss_pred cceEEEEcCccceEEEEEECC
Q psy740 4 MSVIGIDFGNESCFIAAARAG 24 (763)
Q Consensus 4 ~~viGID~GTt~s~va~~~~g 24 (763)
+..+|||.|+|.+++++.+++
T Consensus 144 g~~lGIDiGSTttK~Vl~dd~ 164 (404)
T TIGR03286 144 GLTLGIDSGSTTTKAVVMEDN 164 (404)
T ss_pred CEEEEEEcChhheeeEEEcCC
Confidence 458999999999999998755
No 153
>PRK13320 pantothenate kinase; Reviewed
Probab=42.85 E-value=25 Score=36.28 Aligned_cols=21 Identities=24% Similarity=0.268 Sum_probs=18.8
Q ss_pred ceEEEEcCccceEEEEEECCc
Q psy740 5 SVIGIDFGNESCFIAAARAGG 25 (763)
Q Consensus 5 ~viGID~GTt~s~va~~~~g~ 25 (763)
.++.||.|+|+++.+++.++.
T Consensus 3 M~L~iDiGNT~ik~~~~~~~~ 23 (244)
T PRK13320 3 MNLVIDIGNTTTKLAVFEGDE 23 (244)
T ss_pred eEEEEEeCCCcEEEEEEECCE
Confidence 489999999999999998764
No 154
>PRK13331 pantothenate kinase; Reviewed
Probab=41.56 E-value=30 Score=35.86 Aligned_cols=23 Identities=9% Similarity=0.021 Sum_probs=20.3
Q ss_pred CcceEEEEcCccceEEEEEECCc
Q psy740 3 GMSVIGIDFGNESCFIAAARAGG 25 (763)
Q Consensus 3 ~~~viGID~GTt~s~va~~~~g~ 25 (763)
.|.++.||.|+|+++++++++++
T Consensus 6 ~~~~L~iDiGNT~~~~g~f~~~~ 28 (251)
T PRK13331 6 SNEWLALMIGNSRLHWGYFSGET 28 (251)
T ss_pred CCcEEEEEeCCCcEEEEEEECCE
Confidence 46789999999999999998664
No 155
>PLN02669 xylulokinase
Probab=40.29 E-value=25 Score=41.05 Aligned_cols=21 Identities=14% Similarity=0.142 Sum_probs=18.1
Q ss_pred cceEEEEcCccceEEEEEECC
Q psy740 4 MSVIGIDFGNESCFIAAARAG 24 (763)
Q Consensus 4 ~~viGID~GTt~s~va~~~~g 24 (763)
..+||||+||+.+++++++..
T Consensus 8 ~~~LGiD~GT~s~Ka~l~d~~ 28 (556)
T PLN02669 8 SLFLGFDSSTQSLKATVLDSN 28 (556)
T ss_pred CeEEEEecccCCeEEEEEcCC
Confidence 458999999999999999743
No 156
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=39.90 E-value=45 Score=37.50 Aligned_cols=42 Identities=26% Similarity=0.355 Sum_probs=27.1
Q ss_pred ceEEEEcCccceEEEEEECCceeEEcCCCCCccccEEEEeeCCceEE
Q psy740 5 SVIGIDFGNESCFIAAARAGGIETIANDYSLRATPSCVAFSDRNRIL 51 (763)
Q Consensus 5 ~viGID~GTt~s~va~~~~g~~~iv~n~~~~r~~PS~V~~~~~~~~~ 51 (763)
.-||||+|||.+.+-+.+ -.+.|..|...+|-+ .+.+++.+|
T Consensus 4 ~SVGIDIGTSTTQlvfSr----l~l~n~a~~~~vPri-~I~dkeViY 45 (473)
T PF06277_consen 4 LSVGIDIGTSTTQLVFSR----LTLENRASGFSVPRI-EIVDKEVIY 45 (473)
T ss_pred EEEEEeecCCceeEEEEE----eEEEeccCCCccceE-EEeccEEEe
Confidence 358999999999987764 134455555556654 444555544
No 157
>PLN03237 DNA topoisomerase 2; Provisional
Probab=39.61 E-value=1.1e+02 Score=39.42 Aligned_cols=40 Identities=5% Similarity=0.130 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHhhcCCcccCCCCHHHHHHHHHHHHHH
Q psy740 629 ENIFCSIQIAQKKISMFKEGDERLNHLDAAEITVVEEKVANA 670 (763)
Q Consensus 629 ~~l~~~l~~~~~~l~~~~~~~~~~~~~t~~e~~~l~~~~~e~ 670 (763)
+.|.+.+...+..++.+....+..-| .+|++.+...+++.
T Consensus 1129 ~kL~~~~~~k~~el~~l~~~t~~~lW--~~DLd~f~~~~~~~ 1168 (1465)
T PLN03237 1129 QELCADRDKLNIEVEDLKKTTPKSLW--LKDLDALEKELDKL 1168 (1465)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHH--HHHHHHHHHHHHHH
Confidence 34444444444444444443332222 23455554444443
No 158
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=39.41 E-value=7.7e+02 Score=29.85 Aligned_cols=27 Identities=19% Similarity=0.255 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy740 599 VYISKLDELKAIGEKIRQRKVDYEEKT 625 (763)
Q Consensus 599 ~~~~kl~eL~~~~~pi~~R~~E~~~rp 625 (763)
.+.++++.|+.....+..|+.+..++-
T Consensus 583 ~l~e~~~~l~~~ae~LaeR~e~a~d~Q 609 (717)
T PF10168_consen 583 ELQEERKSLRESAEKLAERYEEAKDKQ 609 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555553
No 159
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=39.04 E-value=2.4e+02 Score=33.33 Aligned_cols=45 Identities=16% Similarity=0.226 Sum_probs=36.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHhhhhhhc
Q psy740 654 HLDAAEITVVEEKVANALKWAENAQSLMNEFTDRTKDAPVPTSEIKNEMQNLNNAVNPVFS 714 (763)
Q Consensus 654 ~~t~~e~~~l~~~~~e~~~Wl~~~~~~q~~~~~~~~dP~~~~~di~~k~~~l~~~~~~l~~ 714 (763)
+++.++.+.+...+++++.||++. .. .+++.+.+.|...+..+..
T Consensus 537 ~~~~~~~~~~~~~l~~~~~~l~~~----~~------------~~~~~~~~~l~~~~~~~~~ 581 (599)
T TIGR01991 537 LLSEDERAAIDAAMEALQKALQGD----DA------------DAIKAAIEALEEATDNFAA 581 (599)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcC----CH------------HHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999752 22 4788888888888887774
No 160
>PF13941 MutL: MutL protein
Probab=38.44 E-value=23 Score=39.87 Aligned_cols=42 Identities=19% Similarity=0.315 Sum_probs=30.4
Q ss_pred eEEEEcCccceEEEEEE--CCceeEEcCCCCCccccEEEEeeCCceEEcH
Q psy740 6 VIGIDFGNESCFIAAAR--AGGIETIANDYSLRATPSCVAFSDRNRILGV 53 (763)
Q Consensus 6 viGID~GTt~s~va~~~--~g~~~iv~n~~~~r~~PS~V~~~~~~~~~G~ 53 (763)
++-+|||+|++++..++ .+..+++. .-..||.| ...+..+|-
T Consensus 2 ~L~~DiGST~Tk~~l~d~~~~~~~~ig----~a~apTTv--~~~Dv~~G~ 45 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLVDGEPRLIG----QAEAPTTV--EPGDVTIGL 45 (457)
T ss_pred EEEEEeCCcceEEeEEeccCCccEEEE----EEeCCCCc--CcccHHHHH
Confidence 68899999999999998 67777763 33567777 224555663
No 161
>PF04848 Pox_A22: Poxvirus A22 protein; InterPro: IPR006932 This family, representing the Poxvirus A22 protein, is a Holliday junction resolvase, it specifically cleaves and resolves four-way DNA Holliday junctions into linear duplex products. ; GO: 0000287 magnesium ion binding, 0000400 four-way junction DNA binding, 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination
Probab=38.32 E-value=43 Score=31.42 Aligned_cols=20 Identities=20% Similarity=0.283 Sum_probs=17.8
Q ss_pred cceEEEEcCccceEEEEEEC
Q psy740 4 MSVIGIDFGNESCFIAAARA 23 (763)
Q Consensus 4 ~~viGID~GTt~s~va~~~~ 23 (763)
|.+++||.|+-|...+++..
T Consensus 1 mii~sIDiGikNlA~~iie~ 20 (143)
T PF04848_consen 1 MIILSIDIGIKNLAYCIIEF 20 (143)
T ss_pred CeEEEEecCCCceeEEEEEc
Confidence 67999999999999999863
No 162
>PRK13326 pantothenate kinase; Reviewed
Probab=38.11 E-value=31 Score=36.04 Aligned_cols=22 Identities=32% Similarity=0.268 Sum_probs=19.4
Q ss_pred cceEEEEcCccceEEEEEECCc
Q psy740 4 MSVIGIDFGNESCFIAAARAGG 25 (763)
Q Consensus 4 ~~viGID~GTt~s~va~~~~g~ 25 (763)
+..+.||.|+|+++++++++++
T Consensus 6 ~~~L~IDiGNT~ik~glf~~~~ 27 (262)
T PRK13326 6 SSQLIIDIGNTSISFALYKDNK 27 (262)
T ss_pred cEEEEEEeCCCeEEEEEEECCE
Confidence 4678999999999999999765
No 163
>PLN03170 chalcone synthase; Provisional
Probab=37.99 E-value=77 Score=35.38 Aligned_cols=50 Identities=14% Similarity=0.143 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCccEEEEecCCC-CcHHHHHHHHHhcCCCC
Q psy740 256 VFENVEKTLKDCLEKSKLALSDIHSVEIVGGSS-RIPAIKGLIEKIFQKTP 305 (763)
Q Consensus 256 l~~~i~~~i~~~l~~a~~~~~~i~~V~lvGGss-riP~v~~~l~~~fg~~~ 305 (763)
-.+=.....+++|+++|+.++||+.|+++-.+. .+|.+.-.|.+.+|...
T Consensus 106 a~~La~~Aa~~AL~~ag~~~~dId~lI~~T~Tg~~~Ps~a~~l~~~LGl~~ 156 (401)
T PLN03170 106 VPKLGKAAAQKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKMLGLRP 156 (401)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCCCChHHHHHHHHhCcCc
Confidence 334456678899999999999999998877544 69999999999998643
No 164
>PLN03173 chalcone synthase; Provisional
Probab=37.50 E-value=80 Score=35.11 Aligned_cols=49 Identities=10% Similarity=0.074 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccEEEEecCCC-CcHHHHHHHHHhcCCCC
Q psy740 257 FENVEKTLKDCLEKSKLALSDIHSVEIVGGSS-RIPAIKGLIEKIFQKTP 305 (763)
Q Consensus 257 ~~~i~~~i~~~l~~a~~~~~~i~~V~lvGGss-riP~v~~~l~~~fg~~~ 305 (763)
.+=..+.++++|+++|+.+++|+.|+++..+. .+|.+--.|.+.+|...
T Consensus 103 ~~La~~Aa~~AL~~ag~~~~dId~li~~t~t~~~~P~~a~~l~~~LGl~~ 152 (391)
T PLN03173 103 PKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLRS 152 (391)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCcccHHHHHHHHHhCCCc
Confidence 34455678899999999999999998877554 68999999999998643
No 165
>PLN02854 3-ketoacyl-CoA synthase
Probab=37.34 E-value=67 Score=37.01 Aligned_cols=46 Identities=13% Similarity=0.171 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHcCCCCCCccEEEE-ecCCCCcHHHHHHHHHhcCCC
Q psy740 259 NVEKTLKDCLEKSKLALSDIHSVEI-VGGSSRIPAIKGLIEKIFQKT 304 (763)
Q Consensus 259 ~i~~~i~~~l~~a~~~~~~i~~V~l-vGGssriP~v~~~l~~~fg~~ 304 (763)
-+...++++|+++|++++|||.|++ +.|...+|.+-.+|.+.+|..
T Consensus 191 v~~~~~~~lL~kaGi~p~dID~LIv~cS~~~p~PSlAa~I~n~LGlr 237 (521)
T PLN02854 191 VMFGALDSLFSKTGVKPRDIGILIVNCSLFNPTPSLSAMIVNHYKLR 237 (521)
T ss_pred HHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCCHHHHHHHHhCCC
Confidence 3455678889999999999999987 334445899999999999854
No 166
>PF11593 Med3: Mediator complex subunit 3 fungal; InterPro: IPR020998 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents the subunit Med3, which is a physical target for Cyc8-Tup1, a yeast transcriptional co-repressor []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=36.22 E-value=1.5e+02 Score=32.13 Aligned_cols=43 Identities=19% Similarity=0.242 Sum_probs=36.3
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy740 580 QLDETENWLYEEGADVNKSVYISKLDELKAIGEKIRQRKVDYEEK 624 (763)
Q Consensus 580 ~l~e~~~WL~~~g~~a~~~~~~~kl~eL~~~~~pi~~R~~E~~~r 624 (763)
.|++.++||-++ +. +++.+.+++.+-++...|+.-++.|+-.-
T Consensus 9 ~LeeLe~kLa~~-d~-~Kd~V~~~I~ea~~sILPlRL~FNeFi~t 51 (379)
T PF11593_consen 9 KLEELEEKLASN-DN-SKDSVMDKISEAQDSILPLRLQFNEFIQT 51 (379)
T ss_pred cHHHHHHHHhcC-Cc-hHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 588999999843 44 99999999999999999998888777643
No 167
>COG3143 CheZ Chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]
Probab=36.20 E-value=4e+02 Score=26.05 Aligned_cols=75 Identities=12% Similarity=0.253 Sum_probs=56.2
Q ss_pred HHHHHHHccchHHhhccCCHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Q psy740 552 VYDLRNKLGSEEEFALYIAADDASKLSTQLDETENWLYEEGADVNKSVYISKLDELKAIGEKIRQRKVDYEEKTKAFENI 631 (763)
Q Consensus 552 iy~~R~~L~~~~~~~~~~teeer~~l~~~l~e~~~WL~~~g~~a~~~~~~~kl~eL~~~~~pi~~R~~E~~~rp~a~~~l 631 (763)
|=+.|++|. |.-..|+.--++..+.++... -.-++|.+-...+..|+.++-.||--+..+
T Consensus 51 IpDArdRL~----YVv~mTeqAA~r~lnaVea~~----------------P~qd~L~~~a~~l~~rWq~wm~~~i~~~~~ 110 (217)
T COG3143 51 IPDARDRLN----YVVQMTEQAAERALNAVEASQ----------------PHQDQLEKSAKALTQRWQDWMARPIDLDDA 110 (217)
T ss_pred CccHHHHHH----HHHHHHHHHHHHHHHHHHhhc----------------hHHHHHHHHHHHHHHHHHHHHcCccchHHH
Confidence 889999995 666666666555555543321 123456777777888999999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q psy740 632 FCSIQIAQKKISMFK 646 (763)
Q Consensus 632 ~~~l~~~~~~l~~~~ 646 (763)
+.....++.||....
T Consensus 111 r~Lv~~t~~fL~~vp 125 (217)
T COG3143 111 RELVTDTRQFLADVP 125 (217)
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999987653
No 168
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=35.08 E-value=78 Score=36.76 Aligned_cols=65 Identities=9% Similarity=0.095 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHcCCCCCCccEEEEecCCCCcHHHHHHHHHhc---CCCCCCC---CChhHHHHhHHHHHcchhc
Q psy740 258 ENVEKTLKDCLEKSKLALSDIHSVEIVGGSSRIPAIKGLIEKIF---QKTPSTT---LNQDEAVARGCALQCAMLS 327 (763)
Q Consensus 258 ~~i~~~i~~~l~~a~~~~~~i~~V~lvGGssriP~v~~~l~~~f---g~~~~~~---~n~deaVa~GAa~~aa~ls 327 (763)
+-+.+.+.++++..+ +..|+|.||.....++++.|.+.+ |.++..+ .-.|.+++.|+|.+....+
T Consensus 231 ~~l~~~~~~~~~~~g-----~~~lvlsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~~~~D~g~~ia~a~~~~~~~ 301 (535)
T PRK09605 231 AMLTEVTERALAHTG-----KDEVLLVGGVAANNRLREMLKEMCEERGADFYVPEPRFCGDNGAMIAWLGLLMYKA 301 (535)
T ss_pred HHHHHHHHHHHHHhC-----CCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCccccchHHHHHHHHHHHHHc
Confidence 333444444444433 678999999999999999999665 4343332 2568999999987654443
No 169
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=35.00 E-value=35 Score=34.21 Aligned_cols=18 Identities=17% Similarity=0.396 Sum_probs=16.4
Q ss_pred ceEEEEcCccceEEEEEE
Q psy740 5 SVIGIDFGNESCFIAAAR 22 (763)
Q Consensus 5 ~viGID~GTt~s~va~~~ 22 (763)
.+++||||.||..|+++.
T Consensus 64 ~~LalDlGGTnlRv~~V~ 81 (206)
T PF00349_consen 64 DFLALDLGGTNLRVALVE 81 (206)
T ss_dssp EEEEEEESSSSEEEEEEE
T ss_pred eEEEEeecCcEEEEEEEE
Confidence 589999999999999875
No 170
>KOG0250|consensus
Probab=34.86 E-value=1e+03 Score=29.91 Aligned_cols=11 Identities=18% Similarity=-0.036 Sum_probs=5.1
Q ss_pred HHHHHHHHHHh
Q psy740 579 TQLDETENWLY 589 (763)
Q Consensus 579 ~~l~e~~~WL~ 589 (763)
..|.+.-+|.+
T Consensus 298 ~~l~~ki~~~~ 308 (1074)
T KOG0250|consen 298 DTLQEKIEEKQ 308 (1074)
T ss_pred HHHHHHHHHHH
Confidence 33444445554
No 171
>PRK04863 mukB cell division protein MukB; Provisional
Probab=34.32 E-value=1.2e+03 Score=30.79 Aligned_cols=27 Identities=15% Similarity=0.300 Sum_probs=14.4
Q ss_pred eHHHHHHHhHH-HHHHHHHHHHHHHHHc
Q psy740 245 CRSEMEELCKD-VFENVEKTLKDCLEKS 271 (763)
Q Consensus 245 tr~~fe~l~~~-l~~~i~~~i~~~l~~a 271 (763)
.|+.|..++.- +..++..-|.+.|.+.
T Consensus 193 dR~kF~kLf~taiy~~i~~~i~~fl~~y 220 (1486)
T PRK04863 193 DRSKFYRLIEASLYGGISSAITRSLRDY 220 (1486)
T ss_pred hHHHHHHHHHHHHHhhHHHhHHHHHHHH
Confidence 36667666643 3335555555555543
No 172
>PLN03172 chalcone synthase family protein; Provisional
Probab=34.14 E-value=87 Score=34.85 Aligned_cols=50 Identities=14% Similarity=0.145 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCccEEEEecCCC-CcHHHHHHHHHhcCCCC
Q psy740 256 VFENVEKTLKDCLEKSKLALSDIHSVEIVGGSS-RIPAIKGLIEKIFQKTP 305 (763)
Q Consensus 256 l~~~i~~~i~~~l~~a~~~~~~i~~V~lvGGss-riP~v~~~l~~~fg~~~ 305 (763)
-.+=..+.++++|+++|+.+++|+.|+++..+. .+|.+--.|.+.+|...
T Consensus 102 a~~La~~Aa~~aL~~ag~~~~dId~ii~~t~t~~~~P~~a~~l~~~LGl~~ 152 (393)
T PLN03172 102 VPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLKP 152 (393)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCcCchHHHHHHHHhCCCC
Confidence 334455678899999999999999998777555 69999999999998643
No 173
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=33.74 E-value=55 Score=35.75 Aligned_cols=45 Identities=18% Similarity=0.130 Sum_probs=35.4
Q ss_pred CccEEEEecCCCCcHHHHHHHHHhcCC----CCCCCCChhHHHHhHHHH
Q psy740 277 DIHSVEIVGGSSRIPAIKGLIEKIFQK----TPSTTLNQDEAVARGCAL 321 (763)
Q Consensus 277 ~i~~V~lvGGssriP~v~~~l~~~fg~----~~~~~~n~deaVa~GAa~ 321 (763)
++|.|++.||-+..+.+.+.|.+.+.. .+...-+-.++.|.||.-
T Consensus 293 ~pD~IV~gGGI~e~~~l~~~I~~~l~~~a~v~~~pg~~e~~ala~ga~r 341 (351)
T TIGR02707 293 KVDAIVLTGGLAYSKYFVSEIIKRVSFIAPVLVYPGEDEMEALAEGALR 341 (351)
T ss_pred CCCEEEEcchhhcCHHHHHHHHHHHHhhCCEEEeCCcHHHHHHHHhHHH
Confidence 589999999999999999999888742 234445668899999853
No 174
>PHA02557 22 prohead core protein; Provisional
Probab=33.72 E-value=3.9e+02 Score=27.75 Aligned_cols=80 Identities=18% Similarity=0.201 Sum_probs=54.9
Q ss_pred HHHHHHHHHhhhhchHHHHHHHHHhhhhHHHH-HHHHHHccchHHhhccCCHHHHHHHHHHHHHHHHHHhhcCCCCCHHH
Q psy740 521 LNAHTELEGKMIADDKLEKERIDARNCLEEYV-YDLRNKLGSEEEFALYIAADDASKLSTQLDETENWLYEEGADVNKSV 599 (763)
Q Consensus 521 i~~~~~~~~~~~~~D~~~~~~~ea~N~LEs~i-y~~R~~L~~~~~~~~~~teeer~~l~~~l~e~~~WL~~~g~~a~~~~ 599 (763)
+..|.+++..+ ..+.....+..+.|+.+| |..|+.+- ..-..-+++.+++++..++.-++ . -+.
T Consensus 143 V~em~~~L~E~---e~~~~~l~~en~~l~e~i~~~~r~~i~--~e~t~gLtdsQkeKv~~L~Egve---------f-~e~ 207 (271)
T PHA02557 143 VAEMEEELDEM---EEELNELFEENVALEEYINEVKREVIL--SEVTKDLTESQKEKVASLAEGLE---------F-SET 207 (271)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHcchhHHHHHHHHHHHhccc---------h-hhH
Confidence 44444444443 445555566677777765 55677776 46677889999999998885443 2 368
Q ss_pred HHHHHHHHHHHHHHHH
Q psy740 600 YISKLDELKAIGEKIR 615 (763)
Q Consensus 600 ~~~kl~eL~~~~~pi~ 615 (763)
|..||..|.....+..
T Consensus 208 F~~kl~~i~E~v~~~~ 223 (271)
T PHA02557 208 FSKKLTAIVEMVFKSK 223 (271)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999998886654
No 175
>KOG0680|consensus
Probab=33.60 E-value=49 Score=35.06 Aligned_cols=31 Identities=19% Similarity=0.122 Sum_probs=25.6
Q ss_pred CCCcceEEEEcCccceEEEEEECCceeEEcCC
Q psy740 1 MAGMSVIGIDFGNESCFIAAARAGGIETIAND 32 (763)
Q Consensus 1 m~~~~viGID~GTt~s~va~~~~g~~~iv~n~ 32 (763)
|+ +..|-+|=|..+.+++...+..+.+++|-
T Consensus 1 m~-~~tiVlDNGay~~KiG~s~~~~p~~vpNc 31 (400)
T KOG0680|consen 1 ME-TTTIVLDNGAYNIKIGPSTNKKPFVVPNC 31 (400)
T ss_pred CC-CceEEEcCCceeEEeccCCCCCceeccch
Confidence 65 77888999999999999988777777653
No 176
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=32.89 E-value=9.1e+02 Score=28.78 Aligned_cols=47 Identities=19% Similarity=0.201 Sum_probs=20.8
Q ss_pred CCCCHHHHHHHHHHHHhhh-hchHHHHHHHHHhhhhHHHHHHHHHHcc
Q psy740 514 HGLSPEQLNAHTELEGKMI-ADDKLEKERIDARNCLEEYVYDLRNKLG 560 (763)
Q Consensus 514 ~~ls~~ei~~~~~~~~~~~-~~D~~~~~~~ea~N~LEs~iy~~R~~L~ 560 (763)
+.++..++.........+. ..........+....+|.-+-.+..+|.
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~el~~l~~~l~ 415 (650)
T TIGR03185 368 HRLSGSELTQLEVLIQQVKRELQDAKSQLLKELRELEEELAEVDKKIS 415 (650)
T ss_pred ccCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3556666554433333322 1112233333444455555555555554
No 177
>COG4296 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.82 E-value=76 Score=28.99 Aligned_cols=23 Identities=17% Similarity=0.554 Sum_probs=19.3
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHH
Q psy740 583 ETENWLYEEGADVNKSVYISKLD 605 (763)
Q Consensus 583 e~~~WL~~~g~~a~~~~~~~kl~ 605 (763)
..++||++|+.--|.+.|++|+.
T Consensus 90 knE~WleEDe~~iTpE~fk~Rm~ 112 (156)
T COG4296 90 KNEDWLEEDEQPITPESFKERMA 112 (156)
T ss_pred chhhhhhccCCccCHHHHHHHhh
Confidence 35789999988899999998764
No 178
>PF15043 CNRIP1: CB1 cannabinoid receptor-interacting protein 1
Probab=32.10 E-value=4.6e+02 Score=25.07 Aligned_cols=39 Identities=18% Similarity=0.415 Sum_probs=33.7
Q ss_pred CcccceEEeeccCCCCCCCcceEEEEEEEcCCccEEEEE
Q psy740 400 SKFIGKYQINDVKPGPDNASQKVTVKVRVNMDGVIGVIA 438 (763)
Q Consensus 400 ~~~ig~~~i~~i~~~~~g~~~~i~v~~~vd~~Gil~v~~ 438 (763)
..+-|.|.-.|+++..+|+-..|.|.+.++..|.|.+.-
T Consensus 80 ~vYs~~~~T~G~~~TKsG~Rq~i~i~~~f~~~g~~~~~~ 118 (161)
T PF15043_consen 80 VVYSGQYDTEGVPPTKSGERQPIQISMQFNPGGTLETVW 118 (161)
T ss_pred eEEEEEeecCCCCcccCCccccEEEEEEecCcceEEEEE
Confidence 346789999999999999888899999999999887653
No 179
>PRK07515 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=31.94 E-value=73 Score=35.05 Aligned_cols=48 Identities=15% Similarity=0.194 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHHHHHHHcCCCCCCccEEEEecCCCCcHHHHHHHHHhcC
Q psy740 253 CKDVFENVEKTLKDCLEKSKLALSDIHSVEIVGGSSRIPAIKGLIEKIFQ 302 (763)
Q Consensus 253 ~~~l~~~i~~~i~~~l~~a~~~~~~i~~V~lvGGssriP~v~~~l~~~fg 302 (763)
.......+...|+++|++++++++||+.+++-+++.++-- ..+++.||
T Consensus 266 ~~~~~~~~~~~i~~~L~~~gl~~~dId~~~~Hq~~~~~~d--~~~~~llg 313 (372)
T PRK07515 266 FKEVCPMVAEHIVEHLAENGLTPADVKRFWLHQANINMNQ--LIGKKVLG 313 (372)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHCCEEEECCCCHHHHH--HHHHHhcc
Confidence 3455666778999999999999999999999999987532 23444465
No 180
>PLN02192 3-ketoacyl-CoA synthase
Probab=31.53 E-value=1.1e+02 Score=35.30 Aligned_cols=55 Identities=13% Similarity=0.163 Sum_probs=40.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHcCCCCCCccEEEEecC-CCCcHHHHHHHHHhcCCC
Q psy740 250 EELCKDVFENVEKTLKDCLEKSKLALSDIHSVEIVGG-SSRIPAIKGLIEKIFQKT 304 (763)
Q Consensus 250 e~l~~~l~~~i~~~i~~~l~~a~~~~~~i~~V~lvGG-ssriP~v~~~l~~~fg~~ 304 (763)
++..++-..-+...++++|+++|+++.|||.|+.... ....|.+-.+|.+.+|..
T Consensus 170 ~~~~~Ea~~~~~~Aa~~aL~kaGi~p~DIDiLIv~~S~~~~~PSlaa~I~n~lGlr 225 (511)
T PLN02192 170 AEARKEAETVMFGAIDQLLAKTSVKPKDIGILIVNCSLFNPTPSLSAMVINHYKLR 225 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCchHHHHHHHHhCCC
Confidence 3333444444567788999999999999998876532 235799999999999854
No 181
>KOG0964|consensus
Probab=31.49 E-value=1.1e+03 Score=29.31 Aligned_cols=37 Identities=14% Similarity=0.109 Sum_probs=18.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhcCCcccCCCCHHH
Q psy740 623 EKTKAFENIFCSIQIAQKKISMFKEGDERLNHLDAAE 659 (763)
Q Consensus 623 ~rp~a~~~l~~~l~~~~~~l~~~~~~~~~~~~~t~~e 659 (763)
.|..++..++............+....|.|..+.+++
T Consensus 322 ~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee 358 (1200)
T KOG0964|consen 322 QRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEE 358 (1200)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHH
Confidence 4444555555554444444444444556666555443
No 182
>KOG0964|consensus
Probab=31.45 E-value=1.1e+03 Score=29.30 Aligned_cols=49 Identities=8% Similarity=0.146 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHhhhhhhcCC
Q psy740 668 ANALKWAENAQSLMNEFTDRTKDAPVPTSEIKNEMQNLNNAVNPVFSKP 716 (763)
Q Consensus 668 ~e~~~Wl~~~~~~q~~~~~~~~dP~~~~~di~~k~~~l~~~~~~l~~kp 716 (763)
++...-+.+...+..+-.|+|.+-+=.-.....++..|+.....|+-|.
T Consensus 331 ~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kq 379 (1200)
T KOG0964|consen 331 QKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQ 379 (1200)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333333333333333245555444455566666777777777676553
No 183
>PLN03168 chalcone synthase; Provisional
Probab=31.42 E-value=95 Score=34.49 Aligned_cols=51 Identities=16% Similarity=0.202 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCccEEEEecCC-CCcHHHHHHHHHhcCCCC
Q psy740 255 DVFENVEKTLKDCLEKSKLALSDIHSVEIVGGS-SRIPAIKGLIEKIFQKTP 305 (763)
Q Consensus 255 ~l~~~i~~~i~~~l~~a~~~~~~i~~V~lvGGs-sriP~v~~~l~~~fg~~~ 305 (763)
.-.+=..+..+++|+++|+.++||+.|+++-.+ -.+|.+--.|.+.+|...
T Consensus 100 ~a~~La~~Aa~~AL~~ag~~~~dId~lI~~T~Tg~~~Ps~a~~l~~~LGl~~ 151 (389)
T PLN03168 100 QVPKLAAEAAQKAIKEWGGRKSDITHIVFATTSGVNMPGADHALAKLLGLKP 151 (389)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCccHHHHHHHHhCcCC
Confidence 344445677889999999999999999876433 358999999999998643
No 184
>COG3513 Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]
Probab=31.22 E-value=20 Score=42.26 Aligned_cols=74 Identities=22% Similarity=0.240 Sum_probs=41.8
Q ss_pred CCCcceEEEEcCccceEEEEEECCc--eeEEcCCCCCccccEEEEeeCCc-----eEEcHHHHHhHhhccCchHHHhhhh
Q psy740 1 MAGMSVIGIDFGNESCFIAAARAGG--IETIANDYSLRATPSCVAFSDRN-----RILGVAAKNQTVTNMKNTIHGFKRL 73 (763)
Q Consensus 1 m~~~~viGID~GTt~s~va~~~~g~--~~iv~n~~~~r~~PS~V~~~~~~-----~~~G~~A~~~~~~~p~~~~~~~Krl 73 (763)
|.+..+||+|+|+.....|++.+.. +.+-.-..|.|.+--+--+..++ |-....|+.... .-++.+.+++||
T Consensus 1 ~~~~yilglDIGi~SVGWAvve~de~~~~~~lkd~Gvrif~~ae~pktGeslA~~rRLaRsaRRr~~-RRk~Rl~~lkrL 79 (1088)
T COG3513 1 MKKAYILGLDIGINSVGWAVVEDDEDEVPIKLKDLGVRIFEGAELPKTGESLALARRLARSARRRIR-RRKNRLLYLKRL 79 (1088)
T ss_pred CCcceEEEeeccccceeeEEeeccccccchHHHHhhhhhhcccccCCcchhhHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 6677899999999988888876441 22333344554433333333222 112223333322 245667788999
Q ss_pred hC
Q psy740 74 IG 75 (763)
Q Consensus 74 lG 75 (763)
+.
T Consensus 80 ~~ 81 (1088)
T COG3513 80 LK 81 (1088)
T ss_pred Hh
Confidence 87
No 185
>PLN00130 succinate dehydrogenase (SDH3); Provisional
Probab=31.15 E-value=6.8 Score=37.37 Aligned_cols=20 Identities=10% Similarity=0.330 Sum_probs=16.6
Q ss_pred cceEEEEcCccceEEEEEEC
Q psy740 4 MSVIGIDFGNESCFIAAARA 23 (763)
Q Consensus 4 ~~viGID~GTt~s~va~~~~ 23 (763)
..+||+|+||+|+++++..+
T Consensus 57 ~d~~g~~~gt~n~~~~~~e~ 76 (213)
T PLN00130 57 NDILGTGLGTNNAIREEREK 76 (213)
T ss_pred cceeccCCCcchHHHHHHhc
Confidence 35899999999999887654
No 186
>KOG0996|consensus
Probab=30.96 E-value=1.2e+03 Score=29.60 Aligned_cols=85 Identities=16% Similarity=0.187 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhh----hHHHHHHHHHHHHHHHH-------HHHhhcCCcccCCC---CHHHHHHHH
Q psy740 599 VYISKLDELKAIGEKIRQRKVDYEEK----TKAFENIFCSIQIAQKK-------ISMFKEGDERLNHL---DAAEITVVE 664 (763)
Q Consensus 599 ~~~~kl~eL~~~~~pi~~R~~E~~~r----p~a~~~l~~~l~~~~~~-------l~~~~~~~~~~~~~---t~~e~~~l~ 664 (763)
.++++-..+++....+..++.+++.+ -+.++.+.+.+.++++- +..+.+.++.+... ...++..|.
T Consensus 374 ~~~e~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~ 453 (1293)
T KOG0996|consen 374 EIKERAKELKNKFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLE 453 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHH
Confidence 34445555555555666666655533 34444444444444433 33333333333211 145666666
Q ss_pred HHHHHHHHHHHHHHHhhhc
Q psy740 665 EKVANALKWAENAQSLMNE 683 (763)
Q Consensus 665 ~~~~e~~~Wl~~~~~~q~~ 683 (763)
...+..+.-|++.+.....
T Consensus 454 ~~~~~~~~~l~e~~~~l~~ 472 (1293)
T KOG0996|consen 454 ELLEKEERELDEILDSLKQ 472 (1293)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 6666666667776665544
No 187
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=30.88 E-value=32 Score=31.76 Aligned_cols=17 Identities=35% Similarity=0.643 Sum_probs=14.8
Q ss_pred EEEEcCccceEEEEEEC
Q psy740 7 IGIDFGNESCFIAAARA 23 (763)
Q Consensus 7 iGID~GTt~s~va~~~~ 23 (763)
+|||||+..+.+|+.+.
T Consensus 1 laiD~G~kriGvA~~d~ 17 (130)
T TIGR00250 1 LGLDFGTKSIGVAGQDI 17 (130)
T ss_pred CeEccCCCeEEEEEECC
Confidence 58999999999998754
No 188
>KOG2910|consensus
Probab=30.67 E-value=5.3e+02 Score=25.34 Aligned_cols=93 Identities=13% Similarity=0.308 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q psy740 606 ELKAIGEKIRQRKVDYEEKTKAFENIFCSIQIAQKKISMFKEGDERLNHLDAAEITVVEEKVANALKWAENAQSLMNEFT 685 (763)
Q Consensus 606 eL~~~~~pi~~R~~E~~~rp~a~~~l~~~l~~~~~~l~~~~~~~~~~~~~t~~e~~~l~~~~~e~~~Wl~~~~~~q~~~~ 685 (763)
.|+.++..|.+-.-+.. +++.|+ .....|..+.. -++-+++..+.+...++..+-++.-+-... .
T Consensus 81 nlEqmvsdiEft~vqk~----V~~gLk----~GN~~lkkl~~------~~~ideV~rimddt~ea~~YQ~Ein~~L~~-~ 145 (209)
T KOG2910|consen 81 NLEQMVSDIEFTQVQKK----VMEGLK----QGNEALKKLQQ------EFDIDEVDRIMDDTQEAIEYQDEINAILSG-S 145 (209)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHH----HHHHHHHHHHH------hcCHHHHHHHHHhHHHHHHHHHHHHHHHHh-h
Confidence 36777777765444332 233332 23333333322 256678888887777777776666553333 2
Q ss_pred CCCCCCCcchHHHHHHHHHHHHhhhhhhcCCC
Q psy740 686 DRTKDAPVPTSEIKNEMQNLNNAVNPVFSKPK 717 (763)
Q Consensus 686 ~~~~dP~~~~~di~~k~~~l~~~~~~l~~kpk 717 (763)
-..+| -.||...++.|..+...=...|-
T Consensus 146 ls~~d----Eddi~~EldaLese~~~e~e~Pe 173 (209)
T KOG2910|consen 146 LSAED----EDDILAELDALESELEVEAELPE 173 (209)
T ss_pred ccccc----HHHHHHHHHHHHHHhhhhhhcCC
Confidence 11221 26888888888888766555553
No 189
>KOG1656|consensus
Probab=30.09 E-value=5.6e+02 Score=25.45 Aligned_cols=68 Identities=13% Similarity=0.209 Sum_probs=47.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHh--hhhhhcCCCCCCCCC
Q psy740 654 HLDAAEITVVEEKVANALKWAENAQSLMNEFTDRTKDAPVPTSEIKNEMQNLNNA--VNPVFSKPKPQPKVE 723 (763)
Q Consensus 654 ~~t~~e~~~l~~~~~e~~~Wl~~~~~~q~~~~~~~~dP~~~~~di~~k~~~l~~~--~~~l~~kpkpk~~~~ 723 (763)
..+-+.+..+.+.|.+-+.-.++....... |.--.--|-=.|+...++.|+.+ -..++..+.|.|+-|
T Consensus 120 ~mDiDkVdd~MdeI~eQqe~a~eIseAiS~--Pvg~~a~~DEDEL~~ELdeLeqeeld~~ll~~~~p~v~LP 189 (221)
T KOG1656|consen 120 NMDIDKVDDLMDEIAEQQEVAEEISEAISA--PVGFGADFDEDELMAELDELEQEELDKELLDIRAPPVPLP 189 (221)
T ss_pred ccChhHHHHHHHHHHHHHHHHHHHHHHHhC--ccccccccCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCC
Confidence 356678888888899888888888777766 43221127778888889888843 346666666655444
No 190
>PF06840 DUF1241: Protein of unknown function (DUF1241); InterPro: IPR009652 This family consists of several programmed cell death 10 protein (PDCD10 or TFAR15) sequences. The function of this family is unknown.; PDB: 3L8I_A 3RQG_B 3RQE_B 3L8J_A 3RQF_B 3AJM_B.
Probab=30.05 E-value=4.9e+02 Score=24.77 Aligned_cols=104 Identities=14% Similarity=0.195 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH----HHHh----hc------------------CCccc-CCCCHH
Q psy740 606 ELKAIGEKIRQRKVDYEEKTKAFENIFCSIQIAQKK----ISMF----KE------------------GDERL-NHLDAA 658 (763)
Q Consensus 606 eL~~~~~pi~~R~~E~~~rp~a~~~l~~~l~~~~~~----l~~~----~~------------------~~~~~-~~~t~~ 658 (763)
-|.-+..|++.++.. .++.|++.|+.++..+++. ..++ .. ....| ..-++.
T Consensus 12 ~L~~li~Pvl~eL~~--~d~~A~q~Lr~Af~kAE~~~PGft~d~v~~ll~~~~~~vnl~es~LR~~~~~~~~~~~~~~~~ 89 (154)
T PF06840_consen 12 ALQCLIRPVLDELEQ--KDSDAIQTLRAAFTKAEKSSPGFTDDFVKGLLERSKLNVNLTESLLRMAGSAPQEYRLSRREP 89 (154)
T ss_dssp HHHHTHHHHHHHHHT--THHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHTHHHHHHHHHHHHHHTTGGTTTTS-SS-SH
T ss_pred HHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHhcCCCCChhHHHHHhccccccchhcCCCcH
Confidence 477888999998887 5666999999999887752 1110 00 00111 122345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHhhhhhhcC
Q psy740 659 EITVVEEKVANALKWAENAQSLMNEFTDRTKDAPVPTSEIKNEMQNLNNAVNPVFSK 715 (763)
Q Consensus 659 e~~~l~~~~~e~~~Wl~~~~~~q~~~~~~~~dP~~~~~di~~k~~~l~~~~~~l~~k 715 (763)
++..|.......+.-|...-.+-.. ++ --.-++++|..-++.|-+.++.++..
T Consensus 90 ~~~el~~~A~~LK~iLSrIPdei~d-R~---~FL~tIK~IAsaIK~lLdAvn~v~~~ 142 (154)
T PF06840_consen 90 EFQELNKRATALKRILSRIPDEISD-RR---TFLETIKEIASAIKKLLDAVNEVFKN 142 (154)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHTTS-HH---HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhcCcHhhcc-hH---HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555555555444444444333222 11 11235677777777777777777653
No 191
>PRK00292 glk glucokinase; Provisional
Probab=29.77 E-value=48 Score=35.56 Aligned_cols=18 Identities=17% Similarity=0.163 Sum_probs=16.9
Q ss_pred ceEEEEcCccceEEEEEE
Q psy740 5 SVIGIDFGNESCFIAAAR 22 (763)
Q Consensus 5 ~viGID~GTt~s~va~~~ 22 (763)
.++|||+|.|++.+++++
T Consensus 3 ~~lgiDIGgT~i~~~l~~ 20 (316)
T PRK00292 3 PALVGDIGGTNARFALCD 20 (316)
T ss_pred eEEEEEcCccceEEEEEe
Confidence 589999999999999997
No 192
>PRK11166 chemotaxis regulator CheZ; Provisional
Probab=29.72 E-value=4.7e+02 Score=26.39 Aligned_cols=65 Identities=8% Similarity=-0.043 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q psy740 606 ELKAIGEKIRQRKVDYEEKTKAFENIFCSIQIAQKKISMFKEGDERLNHLDAAEITVVEEKVANALKWAENAQSLMNEFT 685 (763)
Q Consensus 606 eL~~~~~pi~~R~~E~~~rp~a~~~l~~~l~~~~~~l~~~~~~~~~~~~~t~~e~~~l~~~~~e~~~Wl~~~~~~q~~~~ 685 (763)
.|..-+.-+..|+...-.+|-....|+........||.... .....+...|.+.+.+|.= .
T Consensus 82 ~l~~~a~~L~~~w~~l~~~~~~~~e~~~L~~~~~~fL~~v~------------------~~t~~~~~~L~eI~mAqdF-Q 142 (214)
T PRK11166 82 QLEKEAKALDARWDEWFANPIELADARELVTDTRAFLADVP------------------EHTSFTNAQLLEIMMAQDF-Q 142 (214)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhH------------------hhHHHHHHHHHHHHHHccc-h
Confidence 45556667777777777788888888888888888775543 3345666677777777776 6
Q ss_pred CCCC
Q psy740 686 DRTK 689 (763)
Q Consensus 686 ~~~~ 689 (763)
++|-
T Consensus 143 DLTG 146 (214)
T PRK11166 143 DLTG 146 (214)
T ss_pred HhHh
Confidence 6665
No 193
>COG4052 Uncharacterized protein related to methyl coenzyme M reductase subunit C [General function prediction only]
Probab=29.58 E-value=1.3e+02 Score=30.42 Aligned_cols=53 Identities=15% Similarity=0.233 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHhhh
Q psy740 657 AAEITVVEEKVANALKWAENAQSLMNEFTDRTKDAPVPTSEIKNEMQNLNNAVN 710 (763)
Q Consensus 657 ~~e~~~l~~~~~e~~~Wl~~~~~~q~~~~~~~~dP~~~~~di~~k~~~l~~~~~ 710 (763)
-+|+..|.+.++-....+++...+|.+ -|+-..|++...+|+++...+++...
T Consensus 195 geeI~aL~klvevvs~ii~errrela~-DPp~Vpp~~Vk~eIe~qv~~i~~v~S 247 (310)
T COG4052 195 GEEIRALDKLVEVVSKIISERRRELAK-DPPAVPPAVVKDEIENQVPEIQRVLS 247 (310)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCCchHHHHHHHhhhhHHHhhcC
Confidence 478999999888899999999999999 99999999999999999988887754
No 194
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=29.58 E-value=8.6e+02 Score=29.27 Aligned_cols=46 Identities=9% Similarity=0.112 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCC-CCCCCCcchHHHHHHHH
Q psy740 657 AAEITVVEEKVANALKWAENAQSLMNEFTD-RTKDAPVPTSEIKNEMQ 703 (763)
Q Consensus 657 ~~e~~~l~~~~~e~~~Wl~~~~~~q~~~~~-~~~dP~~~~~di~~k~~ 703 (763)
..=+..|...+++...+.-+..++--+ .| .+.-|.++..+|-.++.
T Consensus 129 ~~vlg~l~~EIe~~~~~vfemeE~R~~-Sp~~~~lp~~~Le~Ive~~~ 175 (683)
T PF08580_consen 129 NDVLGDLDNEIEECIRLVFEMEEKRHS-SPVRHGLPIFELETIVEEMP 175 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcc-CCcccCCCcccHHHHHHhcc
Confidence 445566777777777777777665555 66 66678888888877764
No 195
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=29.37 E-value=6.6e+02 Score=26.03 Aligned_cols=88 Identities=16% Similarity=0.140 Sum_probs=48.5
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH---HHHHHHHHHHHHHhhcCCcccCCCCHHHHHHHHHHH
Q psy740 591 EGADVNKSVYISKLDELKAIGEKIRQRKVDYEEKTKAFENI---FCSIQIAQKKISMFKEGDERLNHLDAAEITVVEEKV 667 (763)
Q Consensus 591 ~g~~a~~~~~~~kl~eL~~~~~pi~~R~~E~~~rp~a~~~l---~~~l~~~~~~l~~~~~~~~~~~~~t~~e~~~l~~~~ 667 (763)
++...+...+..++.+.+.+..-|..| .=...+..|-..+ ...|..+++.+.........-..--.+.+......+
T Consensus 116 ~~~~~~~~~l~~~l~ea~~mL~emr~r-~f~~~~~~Ae~El~~A~~LL~~v~~~~~~~~~~~~~l~~~i~~~L~~~~~kL 194 (264)
T PF06008_consen 116 NGDQLPSEDLQRALAEAQRMLEEMRKR-DFTPQRQNAEDELKEAEDLLSRVQKWFQKPQQENESLAEAIRDDLNDYNAKL 194 (264)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhHHHHHHHHHHHHHHHHHH
Confidence 356778889999999999999999877 3333333333333 344444444332111100000000134455666677
Q ss_pred HHHHHHHHHHHH
Q psy740 668 ANALKWAENAQS 679 (763)
Q Consensus 668 ~e~~~Wl~~~~~ 679 (763)
.+...|+++...
T Consensus 195 ~Dl~~~l~eA~~ 206 (264)
T PF06008_consen 195 QDLRDLLNEAQN 206 (264)
T ss_pred HHHHHHHHHHHH
Confidence 778888887644
No 196
>PRK12408 glucokinase; Provisional
Probab=29.28 E-value=39 Score=36.70 Aligned_cols=19 Identities=26% Similarity=0.317 Sum_probs=17.1
Q ss_pred ceEEEEcCccceEEEEEEC
Q psy740 5 SVIGIDFGNESCFIAAARA 23 (763)
Q Consensus 5 ~viGID~GTt~s~va~~~~ 23 (763)
.++|||+|.|++++++++.
T Consensus 17 ~~L~~DIGGT~i~~al~d~ 35 (336)
T PRK12408 17 SFVAADVGGTHVRVALVCA 35 (336)
T ss_pred cEEEEEcChhhhheeEEec
Confidence 3899999999999999974
No 197
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=29.25 E-value=1.1e+02 Score=31.65 Aligned_cols=41 Identities=24% Similarity=0.276 Sum_probs=32.6
Q ss_pred CccEEEEecCCCCcHHHHHHHHHhcCCCCCCCCChhHHHHhHHH
Q psy740 277 DIHSVEIVGGSSRIPAIKGLIEKIFQKTPSTTLNQDEAVARGCA 320 (763)
Q Consensus 277 ~i~~V~lvGGssriP~v~~~l~~~fg~~~~~~~n~deaVa~GAa 320 (763)
+++.| |=|+|..|++.+.+++.||..+ .-+||.+++|+=+.
T Consensus 172 ~~d~l--ILGCTh~P~l~~~i~~~~~~~v-~~IDp~~~la~~~~ 212 (251)
T TIGR00067 172 LPDTV--VLGCTHFPLLKEEIEQYLPEHV-RLVDSGVHTARRTA 212 (251)
T ss_pred CCCEE--EECcCChHHHHHHHHHHcCCCc-EEECCHHHHHHHHH
Confidence 46665 4499999999999999998654 56899888887664
No 198
>KOG0517|consensus
Probab=28.98 E-value=1.6e+03 Score=30.34 Aligned_cols=140 Identities=10% Similarity=0.188 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHHHhhc--C-CCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH-----------HHHHHHHHHHHH
Q psy740 573 DASKLSTQLDETENWLYEE--G-ADVNKSVYISKLDELKAIGEKIRQRKVDYEEKTK-----------AFENIFCSIQIA 638 (763)
Q Consensus 573 er~~l~~~l~e~~~WL~~~--g-~~a~~~~~~~kl~eL~~~~~pi~~R~~E~~~rp~-----------a~~~l~~~l~~~ 638 (763)
|...+..=+.+-+-||.+- + .-.+.++++.|...|..-.+-...|+.+-...-. -|..-+..|+.-
T Consensus 852 e~d~~ElWi~Eke~~L~~m~~~~~~E~vev~q~rFe~l~~eM~~~~~~v~~Vn~~a~qL~~~ghp~sd~I~~~Q~~Ln~r 931 (2473)
T KOG0517|consen 852 ECDACELWIKEKEKWLATMSPPDSLEDVEVMQHRFEKLEQEMNTLAGRVAEVNDIARQLLEVGHPNSDEILARQDKLNQR 931 (2473)
T ss_pred hccHHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Confidence 4456666677778888742 2 2235677777777776655544444443321110 011111111111
Q ss_pred HHHHHHhhcCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHhhhhhhc
Q psy740 639 QKKISMFKEGDERLNHLDAAEITVVEEKVANALKWAENAQSLMNEFTDRTKDAPVPTSEIKNEMQNLNNAVNPVFS 714 (763)
Q Consensus 639 ~~~l~~~~~~~~~~~~~t~~e~~~l~~~~~e~~~Wl~~~~~~q~~~~~~~~dP~~~~~di~~k~~~l~~~~~~l~~ 714 (763)
=.-+..+.... ...--....+..+.-.|.+|..|+.++...+.. ++.-.+-.-.+-.++.++..+++.+.+|-.
T Consensus 932 W~~l~~l~~qk-~~~L~~a~~V~~f~~eC~et~~wi~dK~~~~e~-t~~~~~Dl~gv~alqrrL~~lErdl~aie~ 1005 (2473)
T KOG0517|consen 932 WQQLRELVDQK-KVALESALRVETFHLECEETRVWIRDKTRVLES-TDRLGNDLAGVMALQRRLQGLERDLAAIEA 1005 (2473)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh-ccccCcchHHHHHHHHHHhhhhhHHHHHHH
Confidence 11111110000 000012345566677899999999999887777 666666656666777777776666665543
No 199
>PRK09557 fructokinase; Reviewed
Probab=28.93 E-value=83 Score=33.35 Aligned_cols=47 Identities=19% Similarity=0.285 Sum_probs=28.4
Q ss_pred CccEEEEecCCCCcHHHHHHHHHhcC-----C----CCCCCCChhHHHHhHHHHHc
Q psy740 277 DIHSVEIVGGSSRIPAIKGLIEKIFQ-----K----TPSTTLNQDEAVARGCALQC 323 (763)
Q Consensus 277 ~i~~V~lvGGssriP~v~~~l~~~fg-----~----~~~~~~n~deaVa~GAa~~a 323 (763)
+.+.|+|-||.++.+.+-..|++.+. . ++..+.-.+.+.++|||+.+
T Consensus 244 dP~~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~~~ 299 (301)
T PRK09557 244 DPDVIVLGGGMSNVDRLYPTLPALLKQYVFGGECETPVRKALHGDSSGVRGAAWLW 299 (301)
T ss_pred CCCEEEEcCcccchHHHHHHHHHHHHHHhcccccCCeEEEcccCCchhhhhhhHhh
Confidence 45677777777776655555554431 1 12333345678899998754
No 200
>PF08392 FAE1_CUT1_RppA: FAE1/Type III polyketide synthase-like protein; InterPro: IPR013601 This domain is found in proteins that are described as 3-ketoacyl-CoA synthases, type III polyketide synthases, fatty acid elongases and fatty acid condensing enzymes, and are found in both prokaryotic and eukaryotic (mainly plant) species. The region contains the active site residues, as well as motifs involved in substrate binding []. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006633 fatty acid biosynthetic process, 0016020 membrane
Probab=28.63 E-value=1.5e+02 Score=31.36 Aligned_cols=45 Identities=18% Similarity=0.253 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHcCCCCCCccEEEE-ecCCCCcHHHHHHHHHhcCCC
Q psy740 260 VEKTLKDCLEKSKLALSDIHSVEI-VGGSSRIPAIKGLIEKIFQKT 304 (763)
Q Consensus 260 i~~~i~~~l~~a~~~~~~i~~V~l-vGGssriP~v~~~l~~~fg~~ 304 (763)
+...|+++|+++|+.+.|||.+++ +..++-.|.+-.+|.+.||..
T Consensus 87 ~f~av~~LL~ktgv~p~dIdiLVvncs~f~ptPSLsamIvnr~~mr 132 (290)
T PF08392_consen 87 IFGAVDDLLAKTGVKPSDIDILVVNCSLFNPTPSLSAMIVNRYGMR 132 (290)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEEECcCCCcCCcHHHHHHHHhCCC
Confidence 456778899999999999997655 557788999999999999854
No 201
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=28.53 E-value=1.1e+03 Score=28.25 Aligned_cols=102 Identities=15% Similarity=0.126 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCcccC
Q psy740 574 ASKLSTQLDETENWLYEEGADVNKSVYISKLDELKAIGEKIRQRKVDYEEKTKAFENIFCSIQIAQKKISMFKEGDERLN 653 (763)
Q Consensus 574 r~~l~~~l~e~~~WL~~~g~~a~~~~~~~kl~eL~~~~~pi~~R~~E~~~rp~a~~~l~~~l~~~~~~l~~~~~~~~~~~ 653 (763)
...+...|+++..=|..-......+.+.+++.+++.....+. .+....-..++.++..+...++.+.......
T Consensus 400 ~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~---- 472 (650)
T TIGR03185 400 LRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSE---AEIEELLRQLETLKEAIEALRKTLDEKTKQK---- 472 (650)
T ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 344455555555555432111233444445555444444443 3444444455556666665555444332211
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy740 654 HLDAAEITVVEEKVANALKWAENAQSLMNE 683 (763)
Q Consensus 654 ~~t~~e~~~l~~~~~e~~~Wl~~~~~~q~~ 683 (763)
............++....+|++.......
T Consensus 473 -~~~~~~~~~~~~~~~~~~~l~~~~~~l~~ 501 (650)
T TIGR03185 473 -INAFELERAITIADKAKKTLKEFREKLLE 501 (650)
T ss_pred -HhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11233344555566667777765554333
No 202
>KOG2004|consensus
Probab=28.46 E-value=4.4e+02 Score=31.58 Aligned_cols=132 Identities=15% Similarity=0.135 Sum_probs=83.5
Q ss_pred HHHHHHHhhhhchHHHHHHHHHhhhhHHHHHHHHHHccchHHhhccCCHHHHHHH-HHHHHHHHHHHhh--cCCCCCHHH
Q psy740 523 AHTELEGKMIADDKLEKERIDARNCLEEYVYDLRNKLGSEEEFALYIAADDASKL-STQLDETENWLYE--EGADVNKSV 599 (763)
Q Consensus 523 ~~~~~~~~~~~~D~~~~~~~ea~N~LEs~iy~~R~~L~~~~~~~~~~teeer~~l-~~~l~e~~~WL~~--~g~~a~~~~ 599 (763)
...+.+.+..-.++.+..+.=.+.++|.. .++.++. .....-++...|+-+ .++|..+..=|-. |..++-.+.
T Consensus 267 elq~vL~~~di~~Rl~~al~llkke~e~~--klq~ki~--k~vE~k~~~~~r~ylL~eQlk~IKkeLg~e~Ddkd~~~~~ 342 (906)
T KOG2004|consen 267 ELQEVLEETDIEKRLEKALELLKKELELA--KLQQKIG--KEVEEKIKQDHREYLLREQLKAIKKELGIEKDDKDALVEK 342 (906)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHH--HHHHHhh--hHHHhhhhHHHHHHHHHHHHHHHHHhhCCCccchhhHHHH
Confidence 33445555555566655555555656543 4455554 234444455555443 4447777777753 345566889
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCcccCCCCHHHHH
Q psy740 600 YISKLDELKAIGEKIRQRKVDYEEKTKAFENIFCSIQIAQKKISMFKEGDERLNHLDAAEIT 661 (763)
Q Consensus 600 ~~~kl~eL~~~~~pi~~R~~E~~~rp~a~~~l~~~l~~~~~~l~~~~~~~~~~~~~t~~e~~ 661 (763)
|.+|+.. .++-+-+..++.+-..|-+.++.-..-.+-.+++|+-+ +.-|| ...+.++++
T Consensus 343 ~~er~~~-~~~P~~v~kv~~eEl~kL~~le~~~sEfnvtrNYLdwl-t~LPW-gk~S~En~d 401 (906)
T KOG2004|consen 343 FRERIKS-LKMPDHVLKVIDEELTKLKLLEPSSSEFNVTRNYLDWL-TSLPW-GKSSTENLD 401 (906)
T ss_pred HHHHhhh-ccCcHHHHHHHHHHHHHHhccCccccchhHHHHHHHHH-HhCCC-CCCChhhhh
Confidence 9999999 67778888888888888888888788888888888544 33333 344555554
No 203
>PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits. This domain has been shown to bind DNA through a winged helix-turn-helix motif []. Phenylalanine-tRNA synthetase may influence common cellular processes via DNA binding, in addition to its aminoacylation function.; GO: 0000287 magnesium ion binding, 0003723 RNA binding, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation; PDB: 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 3PCO_D 2CXI_C 1JJC_B 1EIY_B ....
Probab=27.92 E-value=1.6e+02 Score=23.65 Aligned_cols=59 Identities=14% Similarity=0.233 Sum_probs=39.2
Q ss_pred HHHhhhhhCCCCCChHHHhhhhcCCceeeeCCCCCeEEEEEecCCceeeCHHHHHHHHHH
Q psy740 67 IHGFKRLIGREFKDPHVQDELKFLPYNVSENPDGSIGIKVKYLNEDRVFTPEQITAMLLT 126 (763)
Q Consensus 67 ~~~~KrllG~~~~d~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~peev~a~~L~ 126 (763)
...++++||..++...+...+.++.|.+....++...+.+...- .....+++|+..+++
T Consensus 8 ~~~i~~~lG~~i~~~~i~~~L~~lg~~~~~~~~~~~~v~vP~~R-~Di~~~~DliEEiaR 66 (70)
T PF03484_consen 8 LDKINKLLGIDISPEEIIKILKRLGFKVEKIDGDTLEVTVPSYR-FDIEHEEDLIEEIAR 66 (70)
T ss_dssp HHHHHHHHTS---HHHHHHHHHHTT-EEEE-CTTEEEEEEETTS-TT-SSHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHCCCEEEECCCCEEEEEcCCCc-CCcCcccHHHHHHHH
Confidence 45678999999998889999999999998866666666664321 345678888777765
No 204
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=27.88 E-value=96 Score=32.43 Aligned_cols=49 Identities=16% Similarity=0.157 Sum_probs=39.3
Q ss_pred CCCCCccEEEEecCCCCcHHHHHHHHHhcC----CCCCCCCChhHHHHhHHHH
Q psy740 273 LALSDIHSVEIVGGSSRIPAIKGLIEKIFQ----KTPSTTLNQDEAVARGCAL 321 (763)
Q Consensus 273 ~~~~~i~~V~lvGGssriP~v~~~l~~~fg----~~~~~~~n~deaVa~GAa~ 321 (763)
.-...+|.|+|+||-.+--.+-++|.+... .-+...-|-.+|-|.|+..
T Consensus 292 vL~G~vDaIvLTGGiA~~~~f~~~I~~~v~~iapv~v~PGE~EleALA~G~lR 344 (358)
T COG3426 292 VLKGKVDAIVLTGGIAYEKLFVDAIEDRVSWIAPVIVYPGEDELEALAEGALR 344 (358)
T ss_pred hcCCCCCEEEEecchhhHHHHHHHHHHHHhhhcceEecCCchHHHHHHhhhHH
Confidence 345779999999999999999999988752 2355667888999999864
No 205
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=27.15 E-value=7.2e+02 Score=25.75 Aligned_cols=77 Identities=14% Similarity=0.206 Sum_probs=36.2
Q ss_pred HhhhhHHHHHHHHHHccchHHhhccCCHHHHHHHHHHHHHHHHHHhhc-----CC----CCCHHHHHHHHHHHHHHHHHH
Q psy740 544 ARNCLEEYVYDLRNKLGSEEEFALYIAADDASKLSTQLDETENWLYEE-----GA----DVNKSVYISKLDELKAIGEKI 614 (763)
Q Consensus 544 a~N~LEs~iy~~R~~L~~~~~~~~~~teeer~~l~~~l~e~~~WL~~~-----g~----~a~~~~~~~kl~eL~~~~~pi 614 (763)
+..+.+.++=+||.+=- . -..-..+.|.......|+.+..||... +- ......|..||.+|+.+..-.
T Consensus 128 ~l~ea~~mL~emr~r~f--~-~~~~~Ae~El~~A~~LL~~v~~~~~~~~~~~~~l~~~i~~~L~~~~~kL~Dl~~~l~eA 204 (264)
T PF06008_consen 128 ALAEAQRMLEEMRKRDF--T-PQRQNAEDELKEAEDLLSRVQKWFQKPQQENESLAEAIRDDLNDYNAKLQDLRDLLNEA 204 (264)
T ss_pred HHHHHHHHHHHHHhccc--h-hHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555554421 1 112223556667777777777776221 00 012234555555555555554
Q ss_pred HHHHHhhhh
Q psy740 615 RQRKVDYEE 623 (763)
Q Consensus 615 ~~R~~E~~~ 623 (763)
.....+...
T Consensus 205 ~~~~~ea~~ 213 (264)
T PF06008_consen 205 QNKTREAED 213 (264)
T ss_pred HHHHHHHHH
Confidence 444444443
No 206
>PHA00726 hypothetical protein
Probab=27.10 E-value=82 Score=26.36 Aligned_cols=28 Identities=25% Similarity=0.330 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhhhhhhcCCCCCCCCCC
Q psy740 697 EIKNEMQNLNNAVNPVFSKPKPQPKVEK 724 (763)
Q Consensus 697 di~~k~~~l~~~~~~l~~kpkpk~~~~~ 724 (763)
+|--=.+.+.-...-+++|||||+++..
T Consensus 10 ei~l~fD~i~l~~sLLFRKpK~k~~~~~ 37 (89)
T PHA00726 10 EIVLVFDTIMLTTALLFRKPKPKKVKST 37 (89)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCchhhcC
Confidence 4444455666666678899999987643
No 207
>COG4020 Uncharacterized protein conserved in archaea [Function unknown]
Probab=26.98 E-value=61 Score=33.12 Aligned_cols=53 Identities=15% Similarity=0.109 Sum_probs=34.0
Q ss_pred CCCccEEEEecCCCCcHH---HHHHHHHhcCCCCCCCCChhHHHHhHHHHHcchhcCC
Q psy740 275 LSDIHSVEIVGGSSRIPA---IKGLIEKIFQKTPSTTLNQDEAVARGCALQCAMLSPA 329 (763)
Q Consensus 275 ~~~i~~V~lvGGssriP~---v~~~l~~~fg~~~~~~~n~deaVa~GAa~~aa~ls~~ 329 (763)
..+++.|+|.|.-+-+.. |++.|....-.++ ..-|-++.+.|+|+.|.-.+..
T Consensus 266 ~~~~d~v~laGsvg~~~ep~dv~~ri~~~v~~k~--~~l~~esaaiG~a~IA~DI~~G 321 (332)
T COG4020 266 VYGCDGVVLAGSVGGDREPMDVLKRIKSKVFNKV--AVLPPESAAIGLALIARDIASG 321 (332)
T ss_pred ecCCceEEEecccccccchhhHHHHHHHHHHHHH--hhcCchhhhhhhHHHHHHHHcC
Confidence 566889999885555544 6666665542211 1234456999999998766554
No 208
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=26.54 E-value=1.1e+03 Score=27.64 Aligned_cols=169 Identities=12% Similarity=0.114 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHhhhhchHHHHHHHHHhhhhHHHHHHHHHHccchHHhhccCCHHHHHHHHHHHHHHHHHHhhcCC
Q psy740 514 HGLSPEQLNAHTELEGKMIADDKLEKERIDARNCLEEYVYDLRNKLGSEEEFALYIAADDASKLSTQLDETENWLYEEGA 593 (763)
Q Consensus 514 ~~ls~~ei~~~~~~~~~~~~~D~~~~~~~ea~N~LEs~iy~~R~~L~~~~~~~~~~teeer~~l~~~l~e~~~WL~~~g~ 593 (763)
+.|+..++.....-..++..-........+..|....-.=.+++.+.+ ..++.+.|.+...+..+-|.. -
T Consensus 340 Y~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~lee--------l~e~leeie~eq~ei~e~l~~--L 409 (569)
T PRK04778 340 YTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEE--------ILKQLEEIEKEQEKLSEMLQG--L 409 (569)
T ss_pred cccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH--H
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCcccCCCCHHHHHHHHHHHHHHHHH
Q psy740 594 DVNKSVYISKLDELKAIGEKIRQRKVDYEEKTKAFENIFCSIQIAQKKISMFKEGDERLNHLDAAEITVVEEKVANALKW 673 (763)
Q Consensus 594 ~a~~~~~~~kl~eL~~~~~pi~~R~~E~~~rp~a~~~l~~~l~~~~~~l~~~~~~~~~~~~~t~~e~~~l~~~~~e~~~W 673 (763)
...-.+.++++..++.....+. |+.+....|..-+.+...+..+...+..+...-.. ..+.-..+..-...+.+.-..
T Consensus 410 rk~E~eAr~kL~~~~~~L~~ik-r~l~k~~lpgip~~y~~~~~~~~~~i~~l~~~L~~-g~VNm~ai~~e~~e~~~~~~~ 487 (569)
T PRK04778 410 RKDELEAREKLERYRNKLHEIK-RYLEKSNLPGLPEDYLEMFFEVSDEIEALAEELEE-KPINMEAVNRLLEEATEDVET 487 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHhhhh
Q psy740 674 AENAQSLMNEFTDRTKDAPVPTSEIKNEMQNLNNAVNP 711 (763)
Q Consensus 674 l~~~~~~q~~~~~~~~dP~~~~~di~~k~~~l~~~~~~ 711 (763)
|.+... ||..-...++..+.+
T Consensus 488 L~~q~~-----------------dL~~~a~~lE~~Iqy 508 (569)
T PRK04778 488 LEEETE-----------------ELVENATLTEQLIQY 508 (569)
T ss_pred HHHHHH-----------------HHHHHHHHHHHHHHH
No 209
>KOG1029|consensus
Probab=26.45 E-value=1.2e+03 Score=28.14 Aligned_cols=12 Identities=8% Similarity=0.041 Sum_probs=7.3
Q ss_pred EEecCCCCcCce
Q psy740 364 TVFPEMHAAPFS 375 (763)
Q Consensus 364 ~l~~~~~~iP~~ 375 (763)
.++..|.+||..
T Consensus 259 ema~sGq~lP~t 270 (1118)
T KOG1029|consen 259 EMAKSGQPLPKT 270 (1118)
T ss_pred HHHhcCCCCCCC
Confidence 355667777654
No 210
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=26.26 E-value=33 Score=38.93 Aligned_cols=17 Identities=24% Similarity=0.356 Sum_probs=15.1
Q ss_pred EEEEcCccceEEEEEEC
Q psy740 7 IGIDFGNESCFIAAARA 23 (763)
Q Consensus 7 iGID~GTt~s~va~~~~ 23 (763)
+|||+|||++++++++.
T Consensus 1 ~aiD~Gtt~~k~~l~~~ 17 (454)
T TIGR02627 1 VAVDLGASSGRVMLASY 17 (454)
T ss_pred CcEeccCCchheEEEEE
Confidence 58999999999998864
No 211
>PRK03918 chromosome segregation protein; Provisional
Probab=25.92 E-value=1.3e+03 Score=28.42 Aligned_cols=12 Identities=33% Similarity=0.650 Sum_probs=5.5
Q ss_pred EEec--CCCCcHHH
Q psy740 282 EIVG--GSSRIPAI 293 (763)
Q Consensus 282 ~lvG--GssriP~v 293 (763)
+++| |+...-.+
T Consensus 27 ~i~G~nG~GKStil 40 (880)
T PRK03918 27 LIIGQNGSGKSSIL 40 (880)
T ss_pred EEEcCCCCCHHHHH
Confidence 4555 44444443
No 212
>PF01548 DEDD_Tnp_IS110: Transposase; InterPro: IPR002525 Transposase proteins are necessary for efficient DNA transposition. This entry represents the N-terminal region of the pilin gene inverting protein (PIVML) and members of the IS111A/IS1328/IS1533 family of transposases [, ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=25.69 E-value=84 Score=29.05 Aligned_cols=20 Identities=20% Similarity=0.469 Sum_probs=17.7
Q ss_pred eEEEEcCccceEEEEEECCc
Q psy740 6 VIGIDFGNESCFIAAARAGG 25 (763)
Q Consensus 6 viGID~GTt~s~va~~~~g~ 25 (763)
+||||+|-....|+++.+++
T Consensus 1 ~vGiDv~k~~~~v~v~~~~~ 20 (144)
T PF01548_consen 1 FVGIDVSKDTHDVCVIDPNG 20 (144)
T ss_pred eEEEEcccCeEEEEEEcCCC
Confidence 69999999999999987665
No 213
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=25.69 E-value=99 Score=33.35 Aligned_cols=83 Identities=16% Similarity=0.229 Sum_probs=0.0
Q ss_pred EeeHHHHHHHhHHHHHHHHHHHHHHHHHcCCCCCCccEEEEecCCCCcHHHHHHHHHhcCCC--CCCCCChhHHHHhHHH
Q psy740 243 EMCRSEMEELCKDVFENVEKTLKDCLEKSKLALSDIHSVEIVGGSSRIPAIKGLIEKIFQKT--PSTTLNQDEAVARGCA 320 (763)
Q Consensus 243 ~itr~~fe~l~~~l~~~i~~~i~~~l~~a~~~~~~i~~V~lvGGssriP~v~~~l~~~fg~~--~~~~~n~deaVa~GAa 320 (763)
.+..++.+.+|..+-+-+.+.+-...+++ +....++.++++||-+..-.+|+++.+..... ...-..++.|.--||-
T Consensus 228 ~~~~~d~~dia~sfQ~av~~~L~~kt~rA-l~~~~~~~lvi~GGVaaN~~LR~~l~~~~~~~g~~~~~p~~~lCtDNaaM 306 (342)
T COG0533 228 ELNEEDKEDIAASFQEAVFDMLVEKTERA-LKHTGKKELVIAGGVAANSRLREMLEEMCKERGAEVYIPPLELCTDNAAM 306 (342)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCEEEEeccHHHhHHHHHHHHHHHHhcCCEEEcCChHhccchHHH
Q ss_pred HHcchh
Q psy740 321 LQCAML 326 (763)
Q Consensus 321 ~~aa~l 326 (763)
|..+-+
T Consensus 307 IA~ag~ 312 (342)
T COG0533 307 IAYAGL 312 (342)
T ss_pred HHHHHH
No 214
>TIGR01865 cas_Csn1 CRISPR-associated protein, Csn1 family. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas locus. The species range so far for this protein is animal pathogens and commensals only.
Probab=25.17 E-value=40 Score=41.17 Aligned_cols=20 Identities=25% Similarity=0.335 Sum_probs=17.1
Q ss_pred ceEEEEcCccceEEEEEECC
Q psy740 5 SVIGIDFGNESCFIAAARAG 24 (763)
Q Consensus 5 ~viGID~GTt~s~va~~~~g 24 (763)
.+||+|+||+.+..||+...
T Consensus 2 y~LGLDiGt~SvGWAVv~~d 21 (805)
T TIGR01865 2 YILGLDIGIASVGWAIVEDD 21 (805)
T ss_pred ceeEEeecccceeEEEEecc
Confidence 47899999999999998744
No 215
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=24.89 E-value=2.1e+02 Score=27.76 Aligned_cols=57 Identities=19% Similarity=0.392 Sum_probs=31.2
Q ss_pred HHHHHHHHHccchHHhhccCCHHHHHHHHHHHHHHHHHHhhcCCC-CCHHHHHHHHHHHHHHHHHHHH
Q psy740 550 EYVYDLRNKLGSEEEFALYIAADDASKLSTQLDETENWLYEEGAD-VNKSVYISKLDELKAIGEKIRQ 616 (763)
Q Consensus 550 s~iy~~R~~L~~~~~~~~~~teeer~~l~~~l~e~~~WL~~~g~~-a~~~~~~~kl~eL~~~~~pi~~ 616 (763)
+|+-++|..|. ..+++||+++ ++..+++++|.+++ .+-++..+.|-.-+.+...+..
T Consensus 5 efL~~L~~~L~-------~lp~~e~~e~---l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~~ 62 (181)
T PF08006_consen 5 EFLNELEKYLK-------KLPEEEREEI---LEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREILA 62 (181)
T ss_pred HHHHHHHHHHH-------cCCHHHHHHH---HHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHHH
Confidence 45555555553 2456666554 56666666654432 3556666666555555555553
No 216
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=24.74 E-value=40 Score=38.46 Aligned_cols=17 Identities=24% Similarity=0.415 Sum_probs=15.4
Q ss_pred EEEEcCccceEEEEEEC
Q psy740 7 IGIDFGNESCFIAAARA 23 (763)
Q Consensus 7 iGID~GTt~s~va~~~~ 23 (763)
||||+||+++++++++.
T Consensus 1 lgIDiGtt~ik~~l~d~ 17 (481)
T TIGR01312 1 LGIDLGTSGVKALLVDE 17 (481)
T ss_pred CceeecCcceEEEEECC
Confidence 69999999999999874
No 217
>cd00327 cond_enzymes Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating) Claisen-like condensation reaction. Members are share strong structural similarity, and are involved in the synthesis and degradation of fatty acids, and the production of polyketides, a diverse group of natural products.
Probab=24.53 E-value=2.1e+02 Score=28.99 Aligned_cols=45 Identities=9% Similarity=0.061 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHcCCCCCCccEEEEecCCCC--cHHHHHHHHHhcCCC
Q psy740 260 VEKTLKDCLEKSKLALSDIHSVEIVGGSSR--IPAIKGLIEKIFQKT 304 (763)
Q Consensus 260 i~~~i~~~l~~a~~~~~~i~~V~lvGGssr--iP~v~~~l~~~fg~~ 304 (763)
....++++|+++++.+.+|+.|++...+.- .|.+...|...+|..
T Consensus 11 ~~~A~~~al~~ag~~~~~i~~li~~~~~~~~~~~~~a~~i~~~lg~~ 57 (254)
T cd00327 11 GFEAAEQAIADAGLSKGPIVGVIVGTTGGSGEFSGAAGQLAYHLGIS 57 (254)
T ss_pred HHHHHHHHHHHcCCCCCCceEEEEEECCCCccccHHHHHHHHHhCCC
Confidence 456778899999999999999987665333 688888899999863
No 218
>PLN00415 3-ketoacyl-CoA synthase
Probab=24.53 E-value=1.4e+02 Score=33.82 Aligned_cols=62 Identities=10% Similarity=0.126 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHcCCCCCCccEEEEecCCC-CcHHHHHHHHHhcCCC---CCCCCChhHHHHhHHHH
Q psy740 260 VEKTLKDCLEKSKLALSDIHSVEIVGGSS-RIPAIKGLIEKIFQKT---PSTTLNQDEAVARGCAL 321 (763)
Q Consensus 260 i~~~i~~~l~~a~~~~~~i~~V~lvGGss-riP~v~~~l~~~fg~~---~~~~~n~deaVa~GAa~ 321 (763)
+...++++|+++|+++++||.|++.+..- ..|.+-.+|...+|.. ....++..-|.+...++
T Consensus 138 i~~A~~~aL~~aGi~p~dID~LIvs~T~~~~~Pslaa~l~~~LGLr~~v~~~dL~gmGCsggv~aL 203 (466)
T PLN00415 138 IFGALNSLFKKTGIEPREVGIFIVNCSLFNPNPSLSSMIVNRYKLKTDVKTYNLSGMGCSAGAISV 203 (466)
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEEECcCCCCCchHHHHHHHHhCCCCCceEEEeccccchHHHHHH
Confidence 34567888999999999999988554332 4899999999999854 12334443444443333
No 219
>cd06007 R3H_DEXH_helicase R3H domain of a group of proteins which also contain a DEXH-box helicase domain, and may function as ATP-dependent DNA or RNA helicases. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=24.52 E-value=1.7e+02 Score=22.86 Aligned_cols=32 Identities=22% Similarity=0.175 Sum_probs=25.5
Q ss_pred HHHHHhcCCCCcEEEeecccCCHHHHHHHHHHHh
Q psy740 131 TSEIALQCNISDCVLSVPSFYTNAERKALLDAAK 164 (763)
Q Consensus 131 ~ae~~~~~~v~~~VITVPa~f~~~qR~al~~Aa~ 164 (763)
..+.+.... ...++-|+.|+..+|..+.+.|+
T Consensus 7 ~i~~F~~~~--~~~l~Fpp~ls~~eR~~vH~~a~ 38 (59)
T cd06007 7 ALEDFRASD--NEEYEFPSSLTNHERAVIHRLCR 38 (59)
T ss_pred HHHHHHcCc--ccEEEcCCCCCHHHHHHHHHHHH
Confidence 344444333 68899999999999999999988
No 220
>KOG0797|consensus
Probab=24.43 E-value=22 Score=39.76 Aligned_cols=50 Identities=18% Similarity=0.361 Sum_probs=39.9
Q ss_pred ccEEEEecCCCCcHHHHHHHHHhcC------CC---------CCCCCChhHHHHhHHHHHcchhc
Q psy740 278 IHSVEIVGGSSRIPAIKGLIEKIFQ------KT---------PSTTLNQDEAVARGCALQCAMLS 327 (763)
Q Consensus 278 i~~V~lvGGssriP~v~~~l~~~fg------~~---------~~~~~n~deaVa~GAa~~aa~ls 327 (763)
.++|.+|||+...|.+...|.+..- .+ .-+.+||...+=.|||++|.+-.
T Consensus 527 ~sSil~Vgga~~~~g~~~~LEeRi~n~~pp~~~~I~~VsVip~prdMdp~~VaWKGaaIla~l~~ 591 (618)
T KOG0797|consen 527 FSSILLVGGAGLFPGLVAALEERILNAIPPGREAIDTVSVIPPPRDMDPQFVAWKGAAILAILDF 591 (618)
T ss_pred hhHHHhhcccccchhHHHHHHHHHhccCCccccccCceeecCCCcCCCchheEecchhhhhHHHH
Confidence 5799999999999999999988752 11 12458999999999999986544
No 221
>COG2410 Predicted nuclease (RNAse H fold) [General function prediction only]
Probab=24.22 E-value=1.1e+02 Score=29.34 Aligned_cols=31 Identities=32% Similarity=0.317 Sum_probs=24.1
Q ss_pred cceEEEEcCccc-eEEEEEECCceeEEcCCCC
Q psy740 4 MSVIGIDFGNES-CFIAAARAGGIETIANDYS 34 (763)
Q Consensus 4 ~~viGID~GTt~-s~va~~~~g~~~iv~n~~~ 34 (763)
|.+.|||+|--. +++|++..|.++++.-...
T Consensus 1 mmy~GIDla~k~~tavavl~~~~~~~i~~~s~ 32 (178)
T COG2410 1 MMYAGIDLAVKRSTAVAVLIEGRIEIISAWSS 32 (178)
T ss_pred CcccccccccCCCceEEEEECCEEEEEEcccc
Confidence 567899999765 4688999999998865433
No 222
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=24.22 E-value=35 Score=32.30 Aligned_cols=17 Identities=29% Similarity=0.350 Sum_probs=13.6
Q ss_pred eEEEEcCccceEEEEEE
Q psy740 6 VIGIDFGNESCFIAAAR 22 (763)
Q Consensus 6 viGID~GTt~s~va~~~ 22 (763)
|+|||-|++++..|++.
T Consensus 1 ILGIDPgl~~tG~avi~ 17 (149)
T PF02075_consen 1 ILGIDPGLSNTGYAVIE 17 (149)
T ss_dssp EEEEE--SSEEEEEEEE
T ss_pred CEEECCCCCCeeEEEEE
Confidence 68999999999999985
No 223
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=24.21 E-value=1e+02 Score=32.52 Aligned_cols=47 Identities=17% Similarity=0.157 Sum_probs=29.7
Q ss_pred CccEEEEecCCCCcHHHHHHHHHhcCC-------CCCCCCChhHHHHhHHHHHc
Q psy740 277 DIHSVEIVGGSSRIPAIKGLIEKIFQK-------TPSTTLNQDEAVARGCALQC 323 (763)
Q Consensus 277 ~i~~V~lvGGssriP~v~~~l~~~fg~-------~~~~~~n~deaVa~GAa~~a 323 (763)
+.+.|+|-||.+..+.+-+.+++.+.. ++..+...+.+.++|||..+
T Consensus 233 dpe~IvlgG~~~~~~~~~~~i~~~l~~~~~~~~~~i~~s~~~~~~~~~GAa~~~ 286 (291)
T PRK05082 233 DCQCVVLGGSVGLAEGYLELVQAYLAQEPAIYHVPLLAAHYRHDAGLLGAALWA 286 (291)
T ss_pred CCCEEEEcCccccHHHHHHHHHHHHHhcccccCCeEEECccCCchhhhhHHHHh
Confidence 457888877776665555556555421 12233345778899999876
No 224
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=24.14 E-value=70 Score=32.97 Aligned_cols=47 Identities=19% Similarity=0.212 Sum_probs=29.2
Q ss_pred eeHHHHHHHhHHHHHHHHHHHHHHHHHcCCCCCCccEEEEecCCCCc
Q psy740 244 MCRSEMEELCKDVFENVEKTLKDCLEKSKLALSDIHSVEIVGGSSRI 290 (763)
Q Consensus 244 itr~~fe~l~~~l~~~i~~~i~~~l~~a~~~~~~i~~V~lvGGssri 290 (763)
+-++.-+.+-..++.-....|+.++++..-....--.|+++||.++.
T Consensus 173 ~g~~T~~ai~sG~~~g~~~~i~~~i~~~~~~~~~~~~vi~TGG~a~~ 219 (243)
T TIGR00671 173 LGKSTREAVQSGAVYGVLGLIQGLLKDWKKYFKRKFAVVITGGDGKY 219 (243)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCchHh
Confidence 44566666666777666666666666432111111369999999877
No 225
>KOG3973|consensus
Probab=24.10 E-value=9.2e+02 Score=26.01 Aligned_cols=38 Identities=13% Similarity=0.132 Sum_probs=20.8
Q ss_pred HHHHHHHHHhhhhchHHHHHHHHHhhhhHHHHHHHHHHcc
Q psy740 521 LNAHTELEGKMIADDKLEKERIDARNCLEEYVYDLRNKLG 560 (763)
Q Consensus 521 i~~~~~~~~~~~~~D~~~~~~~ea~N~LEs~iy~~R~~L~ 560 (763)
+.-+...+..+.+.|+..+.. ...+++.|.|++--.|.
T Consensus 44 i~wl~~Elr~L~k~eE~V~q~--~~~~~~eF~~elS~lL~ 81 (465)
T KOG3973|consen 44 IIWLCAELRELYKIEEYVRQP--NDHNLLEFLYELSTLLL 81 (465)
T ss_pred HHHHHHHHHHHHHHHHHhcCC--ChhhHHHHHHHHHHHHH
Confidence 334445555554444444333 34456777787777764
No 226
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=23.81 E-value=1.4e+02 Score=31.71 Aligned_cols=47 Identities=28% Similarity=0.298 Sum_probs=28.1
Q ss_pred CccEEEEecCCCCcHHHHHHHHHhcCC---------CCCCCCChhHHHHhHHHHHc
Q psy740 277 DIHSVEIVGGSSRIPAIKGLIEKIFQK---------TPSTTLNQDEAVARGCALQC 323 (763)
Q Consensus 277 ~i~~V~lvGGssriP~v~~~l~~~fg~---------~~~~~~n~deaVa~GAa~~a 323 (763)
|.+.|+|-||.+..+.+.+.|++.+.. .+..+...+.++++|||..+
T Consensus 245 dP~~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~~~ 300 (303)
T PRK13310 245 DPHLVVLGGGLSNFDAIYEQLPKRLPRHLLPVARVPRIEKARHGDAGGVRGAAFLH 300 (303)
T ss_pred CCCEEEECCcccChHHHHHHHHHHHHHHhcccccCceEEEcccCchHHHHhHHHHh
Confidence 456777766666555555555544411 12233455778999999865
No 227
>PF09286 Pro-kuma_activ: Pro-kumamolisin, activation domain ; InterPro: IPR015366 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found at the N terminus of peptidases belonging to MEROPS peptidase family S53 (sedolisin, clan SB). The domain adopts a ferredoxin-like fold, with an alpha+beta sandwich. Cleavage of the domain results in activation of the peptidase []. ; GO: 0008236 serine-type peptidase activity; PDB: 1T1E_A 3EDY_A 3EE6_A.
Probab=23.59 E-value=1.2e+02 Score=28.30 Aligned_cols=47 Identities=17% Similarity=0.469 Sum_probs=33.3
Q ss_pred hhhhHHHHHHHHHHccchHHhhccCCHHHHHHHH----HHHHHHHHHHhhcCC
Q psy740 545 RNCLEEYVYDLRNKLGSEEEFALYIAADDASKLS----TQLDETENWLYEEGA 593 (763)
Q Consensus 545 ~N~LEs~iy~~R~~L~~~~~~~~~~teeer~~l~----~~l~e~~~WL~~~g~ 593 (763)
.+.||.+++++-+--. ..|..++|.+|..++- +.++.+..||...|-
T Consensus 26 ~~~L~~~l~~vsdP~s--~~Ygk~Lt~~e~~~~~~p~~~~v~~V~~wL~~~G~ 76 (143)
T PF09286_consen 26 LDALEQYLAEVSDPGS--PNYGKYLTPEEFAALFAPSPEDVAAVKSWLKSHGL 76 (143)
T ss_dssp HHHHHHHHHHHHTTTS--TTTT----HHHHHHHHS--HHHHHHHHHHHHHCT-
T ss_pred HHHHHHHHHhCcCCCC--cccccCCCHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 3568899998877555 6799999999988863 468889999998763
No 228
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=23.57 E-value=1.9e+02 Score=32.32 Aligned_cols=61 Identities=16% Similarity=0.180 Sum_probs=0.0
Q ss_pred CcccEEEeeHHHHHHHhHHHHHHHHHHHHHHHHHcCCCCCCccEEEEecCCCCcHHHHHHHH
Q psy740 237 DIDVKGEMCRSEMEELCKDVFENVEKTLKDCLEKSKLALSDIHSVEIVGGSSRIPAIKGLIE 298 (763)
Q Consensus 237 ~~d~~~~itr~~fe~l~~~l~~~i~~~i~~~l~~a~~~~~~i~~V~lvGGssriP~v~~~l~ 298 (763)
+..-.+.||..+. +-++---..+..-++-.|++++++.+||+.|+|.||....=-+++++.
T Consensus 288 ~~~~~i~itq~DI-r~~qlAKaAi~aGi~~Ll~~agi~~~di~~v~lAG~FG~~l~~~~a~~ 348 (412)
T PF14574_consen 288 DIGDDIYITQKDI-REFQLAKAAIRAGIEILLEEAGISPEDIDRVYLAGGFGNYLDPESAIR 348 (412)
T ss_dssp SSSS-EEEEHHHH-HHHHHHHHHHHHHHHHHHHHTT--GGG--EEEEECSS-SEEEHHHHHH
T ss_pred CCCCCEEEeHHHH-HHHHHHHHHHHHHHHHHHHHcCCCHHHccEEEEeCcccccCCHHHHhh
No 229
>KOG2517|consensus
Probab=23.42 E-value=71 Score=36.49 Aligned_cols=19 Identities=32% Similarity=0.366 Sum_probs=17.1
Q ss_pred cceEEEEcCccceEEEEEE
Q psy740 4 MSVIGIDFGNESCFIAAAR 22 (763)
Q Consensus 4 ~~viGID~GTt~s~va~~~ 22 (763)
.-++|||.|||.+++++++
T Consensus 6 ~~~~gIDvGTtSaR~~v~~ 24 (516)
T KOG2517|consen 6 PVVLGIDVGTTSARALVFN 24 (516)
T ss_pred ceEEEEEcCCCceEEEEEe
Confidence 4578999999999999997
No 230
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=23.25 E-value=76 Score=32.84 Aligned_cols=45 Identities=18% Similarity=0.268 Sum_probs=30.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHcCCCCCCccEEEEecCCCCc
Q psy740 246 RSEMEELCKDVFENVEKTLKDCLEKSKLALSDIHSVEIVGGSSRI 290 (763)
Q Consensus 246 r~~fe~l~~~l~~~i~~~i~~~l~~a~~~~~~i~~V~lvGGssri 290 (763)
++..+.+...++--....|+..+++.......=..++++||..++
T Consensus 181 k~T~~aiqsG~v~g~~~~i~~~~~~~k~~~~~~~~~vltGg~~~~ 225 (251)
T COG1521 181 KNTVEAIQSGVVYGYVGLIEGLLKEIKEELKGGDAVVLTGGLAKL 225 (251)
T ss_pred cchHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCCchHh
Confidence 566777777777777777777777654322234689999998643
No 231
>COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases [Posttranslational modification, protein turnover, chaperones]
Probab=22.82 E-value=1.8e+02 Score=31.69 Aligned_cols=54 Identities=17% Similarity=0.193 Sum_probs=41.2
Q ss_pred CCCCCccEEEEecCCCCcHHHHHHHHHhc-CCCCC----CCCChhHHHHhHHHHHcchh
Q psy740 273 LALSDIHSVEIVGGSSRIPAIKGLIEKIF-QKTPS----TTLNQDEAVARGCALQCAML 326 (763)
Q Consensus 273 ~~~~~i~~V~lvGGssriP~v~~~l~~~f-g~~~~----~~~n~deaVa~GAa~~aa~l 326 (763)
.-..+-+..+++||+.+.|.+.+.|...+ |..+. ..+++|..=|.+-|+.|...
T Consensus 286 ~~~~~p~~l~vcGGG~~N~llm~rLa~l~~g~~V~~t~~~g~~gd~~EA~afA~LA~r~ 344 (371)
T COG2377 286 TLQGDPRRLVVCGGGRRNPLLMARLAALLEGVEVATTDEAGLDGDAVEAEAFAWLAWRT 344 (371)
T ss_pred hccCCCceeEeecCCccCHHHHHHHHHhcCCCeeeechhcCCCcchhhHHHHHHHHHHH
Confidence 34566789999999999999999999999 43443 24677777777777777543
No 232
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=22.75 E-value=95 Score=33.77 Aligned_cols=51 Identities=20% Similarity=0.376 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHcCCCCCCccEEEEecCCCCcHHHHHHHHHhc
Q psy740 250 EELCKDVFENVEKTLKDCLEKSKLALSDIHSVEIVGGSSRIPAIKGLIEKIF 301 (763)
Q Consensus 250 e~l~~~l~~~i~~~i~~~l~~a~~~~~~i~~V~lvGGssriP~v~~~l~~~f 301 (763)
..+|..+.+.+.+.+-+.+..+ +....+..|+++||-+...++|+.|++.+
T Consensus 237 ~diaasfq~~v~~~L~~k~~~a-~~~~~~~~lvv~GGVAaN~~LR~~l~~~~ 287 (345)
T PTZ00340 237 DDLCFSLQETIFAMLVEVTERA-MSHCGSNEVLIVGGVGCNLRLQEMMQQMA 287 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHhCCCeEEEcCCHHHHHHHHHHHHHHH
No 233
>PRK13690 hypothetical protein; Provisional
Probab=22.69 E-value=3.4e+02 Score=26.41 Aligned_cols=46 Identities=15% Similarity=0.314 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCccEEEEecCCCCcHHHHHHHHHhcCCCCCCCCChh
Q psy740 255 DVFENVEKTLKDCLEKSKLALSDIHSVEIVGGSSRIPAIKGLIEKIFQKTPSTTLNQD 312 (763)
Q Consensus 255 ~l~~~i~~~i~~~l~~a~~~~~~i~~V~lvGGssriP~v~~~l~~~fg~~~~~~~n~d 312 (763)
.+-+.+...+...++.+++.+.+ |+++|.|| +++.|..+.+.-+.+
T Consensus 5 ~i~~~~~~~~~El~~~a~l~~g~---i~VvGcST---------SEV~G~~IGt~ss~e 50 (184)
T PRK13690 5 EIKKQTRQILEELLEQANLKPGQ---IFVLGCST---------SEVLGERIGTAGSLE 50 (184)
T ss_pred HHHHHHHHHHHHHHHhhCCCCCC---EEEEecch---------HhhCCcccCCcChHH
Confidence 45667778888889999998755 89999998 577787776665554
No 234
>TIGR03190 benz_CoA_bzdN benzoyl-CoA reductase, bzd-type, N subunit. Members of this family are the N subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=22.55 E-value=7.1e+02 Score=27.42 Aligned_cols=64 Identities=9% Similarity=0.060 Sum_probs=49.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHH
Q psy740 624 KTKAFENIFCSIQIAQKKISMFKEGDERLNHLDAAEITVVEEKVANALKWAENAQSLMNEFTDRTKDAPVPTSE 697 (763)
Q Consensus 624 rp~a~~~l~~~l~~~~~~l~~~~~~~~~~~~~t~~e~~~l~~~~~e~~~Wl~~~~~~q~~~~~~~~dP~~~~~d 697 (763)
.|.+++.+...+.....+|+.... ..+|++.+....+..++....|.+..+.+.. .+|.++..|
T Consensus 129 ~~~~~~y~~~el~~l~~~LE~~~G-----~~i~~e~L~~ai~~~n~~r~~~~~~~~l~~~-----~p~pitg~e 192 (377)
T TIGR03190 129 SPHARKAHYAEVQRFRVFLQTLTG-----KEITDDMLRDALAVCDENRRLLRELFDYRKE-----ADPKVTGVE 192 (377)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHC-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHcc-----CCCCcCHHH
Confidence 477888888888888888877654 3489999999999999999999888775544 344555544
No 235
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=22.53 E-value=2.1e+02 Score=32.47 Aligned_cols=70 Identities=16% Similarity=0.231 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHcCCCCCCc--cEEEEecCCCCcHHHHHHHHHhc---CCCC--CCCCChhHHHHhHHHHHcchhcC
Q psy740 258 ENVEKTLKDCLEKSKLALSDI--HSVEIVGGSSRIPAIKGLIEKIF---QKTP--STTLNQDEAVARGCALQCAMLSP 328 (763)
Q Consensus 258 ~~i~~~i~~~l~~a~~~~~~i--~~V~lvGGssriP~v~~~l~~~f---g~~~--~~~~n~deaVa~GAa~~aa~ls~ 328 (763)
+++..+|++-.+.||+.+++| +.++++|.++++-=+++.+...= |.-+ ...++.+.-++ |-|--++.|+.
T Consensus 66 ~~i~~~V~~ey~~Agi~~~die~~ahIITg~~~~~~Nl~~~v~~~~~~~gdfVVA~AG~~le~iva-~~ASg~avLse 142 (475)
T PRK10719 66 AAIKELIEEEYQKAGIAPESIDSGAVIITGETARKENAREVVMALSGSAGDFVVATAGPDLESIIA-GKGAGAQTLSE 142 (475)
T ss_pred HHHHHHHHHHHHHcCCCHHHccccEEEEEechhHHHHHHHHHHHhcccccceeeeccCccHHHhhh-HHHhhHHHhhh
Confidence 678899999999999999998 59999999999999999998732 2222 12344443333 55544555654
No 236
>PRK06840 hypothetical protein; Validated
Probab=22.42 E-value=1.3e+02 Score=32.51 Aligned_cols=48 Identities=13% Similarity=0.093 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccEEEEecCCC---CcHHHHHHHHHhcCCC
Q psy740 257 FENVEKTLKDCLEKSKLALSDIHSVEIVGGSS---RIPAIKGLIEKIFQKT 304 (763)
Q Consensus 257 ~~~i~~~i~~~l~~a~~~~~~i~~V~lvGGss---riP~v~~~l~~~fg~~ 304 (763)
.+=....++++|+++++.+.+||.|+.++-.+ ..|..-..|...+|..
T Consensus 54 ~~la~~Aa~~aL~~ag~~~~dId~li~~~~~~~~~~~p~~a~~l~~~lGl~ 104 (339)
T PRK06840 54 SDMAIAAAKPALKQAGVDPAAIDVVIYIGSEHKDYPVWSSAPKIQHEIGAK 104 (339)
T ss_pred HHHHHHHHHHHHHHcCCCHHHCCEEEEeccCCCCCCCCchHHHHHHHhCCC
Confidence 34455778999999999999999998765322 3677677788888754
No 237
>PRK00865 glutamate racemase; Provisional
Probab=22.40 E-value=2e+02 Score=29.93 Aligned_cols=43 Identities=26% Similarity=0.425 Sum_probs=32.6
Q ss_pred CccEEEEecCCCCcHHHHHHHHHhcCCCCCCCCChhHHHHhHHHHH
Q psy740 277 DIHSVEIVGGSSRIPAIKGLIEKIFQKTPSTTLNQDEAVARGCALQ 322 (763)
Q Consensus 277 ~i~~V~lvGGssriP~v~~~l~~~fg~~~~~~~n~deaVa~GAa~~ 322 (763)
.+|.|+| |+|-+|++.+.+++.+|..+ .-+||-+++|.-+.-+
T Consensus 177 g~d~iIL--GCTh~p~l~~~i~~~~~~~v-~vIDp~~~~a~~~~~~ 219 (261)
T PRK00865 177 GIDTLVL--GCTHYPLLKPEIQQVLGEGV-TLIDSGEAIARRVARL 219 (261)
T ss_pred CCCEEEE--CCcCHHHHHHHHHHHcCCCC-EEECCHHHHHHHHHHH
Confidence 4666544 89999999999999987543 4578988888776543
No 238
>PF12401 DUF3662: Protein of unknown function (DUF2662) ; InterPro: IPR022128 This domain family is found in bacteria, and is approximately 120 amino acids in length. The family is found in association with PF00498 from PFAM. ; PDB: 2LC0_A.
Probab=22.24 E-value=4e+02 Score=23.98 Aligned_cols=94 Identities=14% Similarity=0.151 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHhccCCCceeeEEeeccccCcccEEEeeHHHHHHHhH---HH
Q psy740 180 DYKLAKHFSQEFKQKYNIEPESNPRAFLRLLTEVEKLKKQMSANSTKLPFGIECFMNDIDVKGEMCRSEMEELCK---DV 256 (763)
Q Consensus 180 D~~l~~~~~~~~~~~~~~~~~~~~~~~~rL~~~aek~K~~LS~~~~~~~~~ie~l~~~~d~~~~itr~~fe~l~~---~l 256 (763)
+..|-+++-.-|.+.++-.+ ..-....+|.++|+.-...++....- + -..|.+.|+.++|+.+.. .+
T Consensus 5 E~~lE~~v~g~Far~F~~~v-qPvEIa~~L~remd~~a~~~~~~r~~----a-----PN~y~V~Ls~~D~~~l~~~~~~l 74 (116)
T PF12401_consen 5 ERRLERAVEGAFARVFRSEV-QPVEIAKALRREMDDQARVVSRGRTL----A-----PNVYTVELSPEDYERLSPWGDRL 74 (116)
T ss_dssp ----SS--STHHHHHHTTSS--THHHHHHHHHHHHHT-B---TT--B------------EEEEEEEHHHHHHH-S-SHHH
T ss_pred HHHHHHHHHHHHHHhcCCCC-cHHHHHHHHHHHHHhCCeecCCCCEE----c-----CeeEEEEECHHHHHHHhhhHHHH
Confidence 33333344344444444332 22344567777877776666654321 2 235788999999999986 67
Q ss_pred HHHHHHHHHHHHHHcCCCCCCccEEEE
Q psy740 257 FENVEKTLKDCLEKSKLALSDIHSVEI 283 (763)
Q Consensus 257 ~~~i~~~i~~~l~~a~~~~~~i~~V~l 283 (763)
...+...+.+-....|.....--.|.+
T Consensus 75 ~~el~~~l~~~a~~qgy~~~G~v~V~~ 101 (116)
T PF12401_consen 75 ARELADYLAEHAREQGYTFVGPVTVEF 101 (116)
T ss_dssp HHHHHHHHHHHHHHHT-B-SS--EEEE
T ss_pred HHHHHHHHHHHHHHCCCeecCCEEEEE
Confidence 777878888777777766544333433
No 239
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=21.96 E-value=78 Score=33.80 Aligned_cols=68 Identities=18% Similarity=0.153 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCccEEEEecCCCCc-HHHHHHHHHhcCC----------CCCCCCChhHHHHhHHHHHc
Q psy740 255 DVFENVEKTLKDCLEKSKLALSDIHSVEIVGGSSRI-PAIKGLIEKIFQK----------TPSTTLNQDEAVARGCALQC 323 (763)
Q Consensus 255 ~l~~~i~~~i~~~l~~a~~~~~~i~~V~lvGGssri-P~v~~~l~~~fg~----------~~~~~~n~deaVa~GAa~~a 323 (763)
.++++....+-.++...-. .-+.+.|+|-||.++. +.+.+.+++.+.. ++..+.-.+.++++|||..+
T Consensus 230 ~i~~~~~~~L~~~i~~~~~-~~dP~~IvlgG~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~s~~~~~~~~~Gaa~~~ 308 (318)
T TIGR00744 230 DSYREVARWAGAGLADLAS-LFNPSAIVLGGGLSDAGDLLLDPIRKSYKRWLFGGARQVADIIAAQLGNDAGLVGAADLA 308 (318)
T ss_pred HHHHHHHHHHHHHHHHHHH-HhCCCEEEECChhhhCcHHHHHHHHHHHHHHhhhcccCCcEEEEcccCCchhhHHHHHHH
Confidence 3444444444444432211 1245678777776653 4555555544311 12233344678999999875
No 240
>PRK13324 pantothenate kinase; Reviewed
Probab=21.96 E-value=87 Score=32.63 Aligned_cols=20 Identities=20% Similarity=0.350 Sum_probs=17.8
Q ss_pred eEEEEcCccceEEEEEECCc
Q psy740 6 VIGIDFGNESCFIAAARAGG 25 (763)
Q Consensus 6 viGID~GTt~s~va~~~~g~ 25 (763)
++.||.|+|+++.+++.+++
T Consensus 2 iL~iDiGNT~ik~gl~~~~~ 21 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFDGDR 21 (258)
T ss_pred EEEEEeCCCceEEEEEECCE
Confidence 78999999999999998654
No 241
>PRK06328 type III secretion system protein; Validated
Probab=21.63 E-value=8.5e+02 Score=24.65 Aligned_cols=63 Identities=16% Similarity=0.299 Sum_probs=43.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCcch-------------HHHHHHHHHHHHhhhhhhcCCCCC
Q psy740 653 NHLDAAEITVVEEKVANALKWAENAQSLMNEFTDRTKDAPVPT-------------SEIKNEMQNLNNAVNPVFSKPKPQ 719 (763)
Q Consensus 653 ~~~t~~e~~~l~~~~~e~~~Wl~~~~~~q~~~~~~~~dP~~~~-------------~di~~k~~~l~~~~~~l~~kpkpk 719 (763)
-++..+|+..|.+...+...-+. .... +....||.+.. ..|..+++.|.+.+..+++.++|.
T Consensus 136 I~VnP~D~~~v~~~~~~l~~~~~----~~~~-~~I~~D~~L~~GgCiIET~~G~VDasle~ql~~l~~al~~~l~~~~~~ 210 (223)
T PRK06328 136 IHVNPKDLAIVEKSRPELKKIVE----YADS-LIISPKADVTPGGCIIETEAGIINAQLDVQLAALEKAFSTILKHKNPA 210 (223)
T ss_pred EEECHHHHHHHHHHHHHHHHhcc----CCCc-eEEEeCCCCCCCCeEEEeCCceEEecHHHHHHHHHHHHHHHHcccCCc
Confidence 46788999988765544322222 2334 56667776654 368999999999999999876653
Q ss_pred C
Q psy740 720 P 720 (763)
Q Consensus 720 ~ 720 (763)
.
T Consensus 211 ~ 211 (223)
T PRK06328 211 D 211 (223)
T ss_pred c
Confidence 3
No 242
>PRK14878 UGMP family protein; Provisional
Probab=21.61 E-value=1.8e+02 Score=31.40 Aligned_cols=69 Identities=14% Similarity=0.137 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHcCCCCCCccEEEEecCCCCcHHHHHHHHHhc---CCCCCCCCC---hhHHHHhHHHHHcc
Q psy740 251 ELCKDVFENVEKTLKDCLEKSKLALSDIHSVEIVGGSSRIPAIKGLIEKIF---QKTPSTTLN---QDEAVARGCALQCA 324 (763)
Q Consensus 251 ~l~~~l~~~i~~~i~~~l~~a~~~~~~i~~V~lvGGssriP~v~~~l~~~f---g~~~~~~~n---~deaVa~GAa~~aa 324 (763)
.+..-+.+-+.+.++++++..+ +..|+|.||.....++++.|.+.+ |.++..+.. .|.+++. |+.+.
T Consensus 220 ~fq~~l~~~l~~~~~~~~~~~g-----~~~vvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~~~~~D~GimI--A~~g~ 292 (323)
T PRK14878 220 SLRETAFAMLVEVTERALAHTG-----KKEVLLVGGVAANRRLREKLEIMAEDRGAKFYVVPPEYAGDNGAMI--AYTGL 292 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC-----CCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCCCCchHHHHH--HHHHH
Q ss_pred hh
Q psy740 325 ML 326 (763)
Q Consensus 325 ~l 326 (763)
..
T Consensus 293 ~~ 294 (323)
T PRK14878 293 LA 294 (323)
T ss_pred HH
No 243
>PHA02557 22 prohead core protein; Provisional
Probab=21.59 E-value=9.3e+02 Score=25.07 Aligned_cols=19 Identities=5% Similarity=0.045 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHhhhhhhc
Q psy740 696 SEIKNEMQNLNNAVNPVFS 714 (763)
Q Consensus 696 ~di~~k~~~l~~~~~~l~~ 714 (763)
.+...|+..|...+...-.
T Consensus 206 e~F~~kl~~i~E~v~~~~~ 224 (271)
T PHA02557 206 ETFSKKLTAIVEMVFKSKD 224 (271)
T ss_pred hHHHHHHHHHHHHHHhccc
Confidence 5778888888777754433
No 244
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=21.39 E-value=4.1e+02 Score=31.81 Aligned_cols=67 Identities=21% Similarity=0.179 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHH
Q psy740 628 FENIFCSIQIAQKKISMFKEGDERLNHLDAAEITVVEEKVANALKWAENAQSLMNEFTDRTKDAPVPTSEIKNEMQNLNN 707 (763)
Q Consensus 628 ~~~l~~~l~~~~~~l~~~~~~~~~~~~~t~~e~~~l~~~~~e~~~Wl~~~~~~q~~~~~~~~dP~~~~~di~~k~~~l~~ 707 (763)
...+...|..++..+... ..++.++...+...+...+.||+. +.. ...+|..+.+.|.+
T Consensus 556 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~l~~----~~~----------~~~~~~~~~~~l~~ 614 (657)
T PTZ00186 556 RNNAETQLTTAERQLGEW-------KYVSDAEKENVKTLVAELRKAMEN----PNV----------AKDDLAAATDKLQK 614 (657)
T ss_pred HHHHHHHHHHHHHHhhhh-------ccCCHHHHHHHHHHHHHHHHHHhc----CCc----------CHHHHHHHHHHHHH
Confidence 344455555555554321 247889999999999999999962 111 12588899999999
Q ss_pred hhhhhhcC
Q psy740 708 AVNPVFSK 715 (763)
Q Consensus 708 ~~~~l~~k 715 (763)
.+..+..+
T Consensus 615 ~~~~~~~~ 622 (657)
T PTZ00186 615 AVMECGRT 622 (657)
T ss_pred HHHHHHHH
Confidence 99888863
No 245
>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A.
Probab=21.07 E-value=92 Score=31.10 Aligned_cols=21 Identities=24% Similarity=0.256 Sum_probs=17.0
Q ss_pred eEEEEcCccceEEEEEECCce
Q psy740 6 VIGIDFGNESCFIAAARAGGI 26 (763)
Q Consensus 6 viGID~GTt~s~va~~~~g~~ 26 (763)
++-||+|+|+++++++.++.+
T Consensus 1 ~L~iDiGNT~ik~~~~~~~~~ 21 (206)
T PF03309_consen 1 ILLIDIGNTRIKWALFDGDKL 21 (206)
T ss_dssp EEEEEE-SSEEEEEEEETTEE
T ss_pred CEEEEECCCeEEEEEEECCEE
Confidence 478999999999999987743
No 246
>TIGR03274 methan_mark_7 putative methanogenesis marker protein 7. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=21.00 E-value=1.3e+02 Score=31.06 Aligned_cols=52 Identities=12% Similarity=0.160 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHhh
Q psy740 657 AAEITVVEEKVANALKWAENAQSLMNEFTDRTKDAPVPTSEIKNEMQNLNNAV 709 (763)
Q Consensus 657 ~~e~~~l~~~~~e~~~Wl~~~~~~q~~~~~~~~dP~~~~~di~~k~~~l~~~~ 709 (763)
.+|+..|.+.+++...-++++..++.+ -|+...|+....+|+++.-.+....
T Consensus 191 ~eei~~Ld~lv~~v~~~i~~rR~ela~-DPl~v~p~~v~~~ie~qvp~i~~v~ 242 (302)
T TIGR03274 191 GEEIRALDKLVEVVSKIIDERRRELAK-DPLIVPPARVKDEIERQVPAIKEVT 242 (302)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCCcHHHHHHHHhhCchhhccC
Confidence 478888888899999999999999999 9999999999999988776666543
No 247
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=20.83 E-value=1.1e+03 Score=25.44 Aligned_cols=12 Identities=17% Similarity=0.302 Sum_probs=5.2
Q ss_pred CCHHHHHHHHHH
Q psy740 655 LDAAEITVVEEK 666 (763)
Q Consensus 655 ~t~~e~~~l~~~ 666 (763)
+|..|+..+...
T Consensus 273 ~t~~Ev~~Lk~~ 284 (325)
T PF08317_consen 273 WTRSEVKRLKAK 284 (325)
T ss_pred CCHHHHHHHHHH
Confidence 344444444443
No 248
>PRK12879 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=20.81 E-value=1.9e+02 Score=30.81 Aligned_cols=48 Identities=21% Similarity=0.105 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCccEEEEecCCCCcHHHHHHHHHhcCCC
Q psy740 254 KDVFENVEKTLKDCLEKSKLALSDIHSVEIVGGSSRIPAIKGLIEKIFQKT 304 (763)
Q Consensus 254 ~~l~~~i~~~i~~~l~~a~~~~~~i~~V~lvGGssriP~v~~~l~~~fg~~ 304 (763)
...+..+...++++|++++++++||+.+++-.++ +.+.+.+.+.+|.+
T Consensus 221 ~~~~~~~~~~i~~~L~~~g~~~~did~~~~h~~~---~~~~~~~~~~lg~~ 268 (325)
T PRK12879 221 KWAVRTMPKGARQVLEKAGLTKDDIDWVIPHQAN---LRIIESLCEKLGIP 268 (325)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEECCCC---HHHHHHHHHHcCCC
Confidence 3445667788999999999999999999999887 44456778887753
No 249
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=20.75 E-value=1e+02 Score=32.46 Aligned_cols=18 Identities=33% Similarity=0.414 Sum_probs=15.8
Q ss_pred ceEEEEcCccceEEEEEE
Q psy740 5 SVIGIDFGNESCFIAAAR 22 (763)
Q Consensus 5 ~viGID~GTt~s~va~~~ 22 (763)
+.||||.|+|.+++++..
T Consensus 1 ~~iGiDiGgT~~Kiv~~~ 18 (279)
T TIGR00555 1 SRIGIDIGGTLIKVVYEE 18 (279)
T ss_pred CeEEEEeCcceEEEEEEc
Confidence 368999999999999874
No 250
>PRK10807 paraquat-inducible protein B; Provisional
Probab=20.69 E-value=5.1e+02 Score=30.23 Aligned_cols=58 Identities=5% Similarity=0.098 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-hccCCCCCCCCcchHHHHHHHHHHHHhhhhhhcCC
Q psy740 658 AEITVVEEKVANALKWAENAQSLM-NEFTDRTKDAPVPTSEIKNEMQNLNNAVNPVFSKP 716 (763)
Q Consensus 658 ~e~~~l~~~~~e~~~Wl~~~~~~q-~~~~~~~~dP~~~~~di~~k~~~l~~~~~~l~~kp 716 (763)
+..+.+...++.+..=++..++.. .. .+.+.+-.=+..++..-+++|...+++|-++|
T Consensus 469 ~~~~~Lp~~L~~TL~~l~~~l~~~~~~-s~~~~~l~~tl~~l~~~~r~lr~l~~~L~~~P 527 (547)
T PRK10807 469 QSMQQLPADMQKTLRELNRSMQGFQPG-SPAYNKMVADMQRLDQVLRELQPVLKTLNEKS 527 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 444455455555555445544431 12 33444333345667777777777777777765
No 251
>PRK03918 chromosome segregation protein; Provisional
Probab=20.63 E-value=1.6e+03 Score=27.58 Aligned_cols=64 Identities=16% Similarity=0.145 Sum_probs=35.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q psy740 569 IAADDASKLSTQLDETENWLYEEGADVNKSVYISKLDELKAIGEKIRQRKVDYEEKTKAFENIFCS 634 (763)
Q Consensus 569 ~teeer~~l~~~l~e~~~WL~~~g~~a~~~~~~~kl~eL~~~~~pi~~R~~E~~~rp~a~~~l~~~ 634 (763)
.++++.+.+...+..++..+.+- ....+.+..++..|+.-...+...+......-..++.+...
T Consensus 656 ~~~~~~~~l~~~~~~l~~~l~~l--~~~~~~l~~~i~~l~~~i~~~~~~~~~l~~~~~~~~~l~~~ 719 (880)
T PRK03918 656 YSEEEYEELREEYLELSRELAGL--RAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKA 719 (880)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777542 23455566666666665555544443333333333333333
No 252
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=20.42 E-value=1.8e+03 Score=28.05 Aligned_cols=45 Identities=13% Similarity=0.144 Sum_probs=21.4
Q ss_pred CCCHHHHHHHHHHHHhhhhchHHHHHHHHHhhhhHHHHHHHHHHc
Q psy740 515 GLSPEQLNAHTELEGKMIADDKLEKERIDARNCLEEYVYDLRNKL 559 (763)
Q Consensus 515 ~ls~~ei~~~~~~~~~~~~~D~~~~~~~ea~N~LEs~iy~~R~~L 559 (763)
.+++.+...+++.+..+...+....+..+....++.-+.++++.+
T Consensus 149 ~~~~~~r~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~l~el~~~~ 193 (1164)
T TIGR02169 149 SMSPVERRKIIDEIAGVAEFDRKKEKALEELEEVEENIERLDLII 193 (1164)
T ss_pred CCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666656665554444444444443334444444444444444
No 253
>PF07361 Cytochrom_B562: Cytochrome b562; InterPro: IPR009155 Cytochrome b562 is a haem-containing protein that is expressed in the periplasm of Escherichia coli. In b-type cytochromes, the haem atom is not covalently attached to the polypeptide. Cytochrome b562 has a four-helical bundle structure that is structurally similar to that found in members of the cytochrome c family (IPR002321 from INTERPRO). Cytochrome b562 has a reduction potential of 167 mV, which sets the energy yield possible in metabolism and is also a key determinant of the rate at which redox reactions proceed [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0042597 periplasmic space; PDB: 4ER9_A 3IQ6_G 2QLA_B 3FOO_A 3M79_C 256B_A 3NMI_F 3HNK_A 3NMK_D 2BC5_A ....
Probab=20.40 E-value=5.9e+02 Score=22.33 Aligned_cols=44 Identities=11% Similarity=0.160 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHhhhhhh
Q psy740 657 AAEITVVEEKVANALKWAENAQSLMNEFTDRTKDAPVPTSEIKNEMQNLNNAVNPVF 713 (763)
Q Consensus 657 ~~e~~~l~~~~~e~~~Wl~~~~~~q~~~~~~~~dP~~~~~di~~k~~~l~~~~~~l~ 713 (763)
.+-++.|...|+.+..+++..--.+.+ ..-.++..|.++++..+
T Consensus 59 ~~Gl~~li~~id~a~~~~~~G~l~~AK-------------~~l~~l~~lR~eyHkk~ 102 (103)
T PF07361_consen 59 QEGLDKLIDQIDKAEALAEAGKLDEAK-------------AALKKLDDLRKEYHKKF 102 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHHH-------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHH-------------HHHHHHHHHHHHHhHhc
Confidence 356678888888888888776555666 66777777777776544
No 254
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=20.34 E-value=1.1e+03 Score=25.34 Aligned_cols=18 Identities=17% Similarity=0.174 Sum_probs=10.8
Q ss_pred CCCCHHHHHHHHHHHHHH
Q psy740 653 NHLDAAEITVVEEKVANA 670 (763)
Q Consensus 653 ~~~t~~e~~~l~~~~~e~ 670 (763)
.++|..|+..|...++..
T Consensus 266 r~~t~~Ei~~Lk~~~~~L 283 (312)
T smart00787 266 RGFTFKEIEKLKEQLKLL 283 (312)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 456666776666655533
Done!