RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy740
(763 letters)
>gnl|CDD|215656 pfam00012, HSP70, Hsp70 protein. Hsp70 chaperones help to fold
many proteins. Hsp70 assisted folding involves repeated
cycles of substrate binding and release. Hsp70 activity
is ATP dependent. Hsp70 proteins are made up of two
regions: the amino terminus is the ATPase domain and the
carboxyl terminus is the substrate binding region.
Length = 598
Score = 442 bits (1139), Expect = e-147
Identities = 207/671 (30%), Positives = 312/671 (46%), Gaps = 135/671 (20%)
Query: 6 VIGIDFGNESCFIAAARAGGIETIANDYSLRATPSCVAFSDRNRILGVAAKNQTVTNMKN 65
VIGID G + +A GG E IAND R TPS VAF+ + R++G AAK Q VTN KN
Sbjct: 1 VIGIDLGTTNSCVAVMEGGGPEVIANDEGNRTTPSVVAFTPKERLVGQAAKRQAVTNPKN 60
Query: 66 TIHGFKRLIGREFKDPHVQDELKFLPYNVSENPDGSIGIKVKYLNEDRVFTPEQITAMLL 125
T+ KRLIGR+F DP VQ ++K +PY V + P+G G++V+YL E FTPEQI+AM+L
Sbjct: 61 TVFSVKRLIGRKFSDPVVQRDIKHVPYKVVKLPNGDAGVEVRYLGE--TFTPEQISAMVL 118
Query: 126 TKLRETSEIALQCNISDCVLSVPSFYTNAERKALLDAAKIIA-----------SAANPY- 173
KL+ET+E L ++D V++VP+++ +A+R+A DA +I +AA Y
Sbjct: 119 QKLKETAEAYLGEPVTDAVITVPAYFNDAQRQATKDAGRIAGLNVLRIINEPTAAALAYG 178
Query: 174 --------------LGG----------------------------RNIDYKLAKHFSQEF 191
LGG + D +L HF +EF
Sbjct: 179 LDKKDKERNVLVFDLGGGTFDVSILEIGDGVFEVLATNGDTHLGGEDFDNRLVDHFVEEF 238
Query: 192 KQKYNIEPESNPRAFLRLLTEVEKLKKQMSANSTKLPFGIECFMN-DIDVKGEMCRSEME 250
K+KY I+ +PRA RL EK K ++S+N T++ M DV G + R++ E
Sbjct: 239 KKKYGIDLSKDPRALQRLREAAEKAKIELSSNQTEINLPFITAMADGKDVSGTLTRAKFE 298
Query: 251 ELCKDVFENVEKTLKDCLEKSKLALSDIHSVEIVGGSSRIPAIKGLIEKIFQKTPSTTLN 310
ELC D+FE + ++ L+ +KL+ S+I V +VGGS+RIPA++ L+++ F K PS +N
Sbjct: 299 ELCADLFERTLEPVEKALKDAKLSKSEIDEVVLVGGSTRIPAVQELVKEFFGKEPSKGVN 358
Query: 311 QDEAVARGCALQCAMLSPAVRVRDFSVTDLQ--VYPVVMEWDP-SPNEPKDSKNFITVFP 367
DEAVA G A+Q +LS V+D + D+ + + P++ T P
Sbjct: 359 PDEAVAIGAAVQAGVLSGTFDVKDVLLLDVTPLSLGIETLGGVMTKLIPRN-----TTIP 413
Query: 368 EMHAAPFSKKMTFYQNKPFAIQLYY-EGNVPYPSKFIGKYQINDVKPGPDNASQKVTVKV 426
+ Q IQ+Y E + +K +G ++++ + P P Q + V
Sbjct: 414 TKK-SQIFSTAADNQ-TAVEIQVYQGEREMAPDNKLLGSFELDGIPPAPRGVPQ-IEVTF 470
Query: 427 RVNMDGVIGVIAASMVEKVENSGDTESMDVENTEEENGQKQEAGSENTENKAEKTQEGQS 486
++ +G++ V A E + S++ + K
Sbjct: 471 DIDANGILTVSAKDKGTGKEQKITITAS-------------SGLSDDEIERMVK------ 511
Query: 487 EDAEKKAAEAKKKVVSKTLDLTISATTHGLSPEQLNAHTELEGKMIADDKLEKERIDARN 546
DAE+ AAE DK KERI+A+N
Sbjct: 512 -DAEEYAAE---------------------------------------DKKRKERIEAKN 531
Query: 547 CLEEYVYDLRNKLGSEEEFALYIAADDASKLSTQLDETENWLYEEGADVNKSVYISKLDE 606
EEYVY L L E + + D K ++E WL EE +K +K +E
Sbjct: 532 EAEEYVYSLEKSLKEEGDK---LPEADKKK----VEEAIEWLKEELEGEDKEEIEAKTEE 584
Query: 607 LKAIGEKIRQR 617
L+ + + I +R
Sbjct: 585 LQKVVQPIGER 595
>gnl|CDD|212670 cd10228, HSPA4_like_NDB, Nucleotide-binding domain of 105/110 kDa
heat shock proteins including HSPA4 and similar
proteins. This subgroup includes the human proteins,
HSPA4 (also known as 70-kDa heat shock protein 4, APG-2,
HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps
to 5q31.1), HSPA4L (also known as 70-kDa heat shock
protein 4-like, APG-1, HSPH3, and OSP94; the human
HSPA4L gene maps to 4q28), and HSPH1 (also known as heat
shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B;
NY-CO-25; the human HSPH1 gene maps to 13q12.3),
Saccharomyces cerevisiae Sse1p and Sse2p, and a sea
urchin sperm receptor. It belongs to the 105/110 kDa
heat shock protein (HSP105/110) subfamily of the
HSP70-like family, and includes proteins believed to
function generally as co-chaperones of HSP70 chaperones,
acting as nucleotide exchange factors (NEFs), to remove
ADP from their HSP70 chaperone partners during the ATP
hydrolysis cycle. HSP70 chaperones assist in protein
folding and assembly, and can direct incompetent
"client" proteins towards degradation. Like HSP70
chaperones, HSP105/110s have an N-terminal
nucleotide-binding domain (NBD) and a C-terminal
substrate-binding domain (SBD). For HSP70 chaperones,
the nucleotide sits in a deep cleft formed between the
two lobes of the NBD. The two subdomains of each lobe
change conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. Hsp70 chaperone activity is also
regulated by J-domain proteins.
Length = 381
Score = 279 bits (716), Expect = 6e-87
Identities = 98/161 (60%), Positives = 131/161 (81%)
Query: 5 SVIGIDFGNESCFIAAARAGGIETIANDYSLRATPSCVAFSDRNRILGVAAKNQTVTNMK 64
SV+GIDFGN + +A AR GGI+ +AN+YS R TPS V+F ++ R++G AAKNQ ++N K
Sbjct: 1 SVVGIDFGNLNSVVAVARKGGIDVVANEYSNRETPSLVSFGEKQRLIGEAAKNQAISNFK 60
Query: 65 NTIHGFKRLIGREFKDPHVQDELKFLPYNVSENPDGSIGIKVKYLNEDRVFTPEQITAML 124
NT+ FKRLIGR+F DP VQ ELKFLP+ V E PDG +GIKV YL E++VF+PEQ+ AML
Sbjct: 61 NTVRNFKRLIGRKFDDPEVQKELKFLPFKVVELPDGKVGIKVNYLGEEKVFSPEQVLAML 120
Query: 125 LTKLRETSEIALQCNISDCVLSVPSFYTNAERKALLDAAKI 165
LTKL+E +E AL+ ++DCV+SVPS++T+A+R+ALLDAA+I
Sbjct: 121 LTKLKEIAEKALKGKVTDCVISVPSYFTDAQRRALLDAAQI 161
Score = 278 bits (713), Expect = 1e-86
Identities = 96/164 (58%), Positives = 120/164 (73%), Gaps = 1/164 (0%)
Query: 164 KIIASAANPYLGGRNIDYKLAKHFSQEFKQKYNIEPESNPRAFLRLLTEVEKLKKQMSAN 223
K++++A + LGGR+ D L +HF++EFK+KY I+ SNP+A LRLL EKLKK +SAN
Sbjct: 219 KVLSTAFDRNLGGRDFDEALFEHFAKEFKEKYKIDVLSNPKARLRLLAACEKLKKVLSAN 278
Query: 224 STKLPFGIECFMNDIDVKGEMCRSEMEELCKDVFENVEKTLKDCLEKSKLALSDIHSVEI 283
T+ P IEC M D DV G++ R E EELC + E VE+ L+ L ++ L DIHSVEI
Sbjct: 279 -TEAPLNIECLMEDKDVSGKIKREEFEELCAPLLERVEEPLEKALAEAGLTKEDIHSVEI 337
Query: 284 VGGSSRIPAIKGLIEKIFQKTPSTTLNQDEAVARGCALQCAMLS 327
VGGS+RIPA+K LI K+F K STTLN DEAVARGCALQCAMLS
Sbjct: 338 VGGSTRIPAVKELIAKVFGKELSTTLNADEAVARGCALQCAMLS 381
>gnl|CDD|212688 cd11738, HSPA4L_NBD, Nucleotide-binding domain of HSPA4L. Human
HSPA4L (also known as 70-kDa heat shock protein 4-like,
APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to
4q28) is expressed ubiquitously and predominantly in the
testis. It is required for normal spermatogenesis and
plays a role in osmotolerance. HSPA4L belongs to the
105/110 kDa heat shock protein (HSP105/110) subfamily of
the HSP70-like family. HSP105/110s are believed to
function generally as co-chaperones of HSP70 chaperones,
acting as nucleotide exchange factors (NEFs), to remove
ADP from their HSP70 chaperone partners during the ATP
hydrolysis cycle. HSP70 chaperones assist in protein
folding and assembly, and can direct incompetent
"client" proteins towards degradation. Like HSP70
chaperones, HSP105/110s have an N-terminal
nucleotide-binding domain (NBD) and a C-terminal
substrate-binding domain (SBD). For HSP70 chaperones,
the nucleotide sits in a deep cleft formed between the
two lobes of the NBD. The two subdomains of each lobe
change conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. Hsp70 chaperone activity is also
regulated by J-domain proteins.
Length = 383
Score = 272 bits (697), Expect = 2e-84
Identities = 162/385 (42%), Positives = 213/385 (55%), Gaps = 64/385 (16%)
Query: 5 SVIGIDFGNESCFIAAARAGGIETIANDYSLRATPSCVAFSDRNRILGVAAKNQTVTNMK 64
SV+GID G +C+IA AR+GGIETIAN+YS R TP+C++ R R +G AAK+Q VTN++
Sbjct: 1 SVVGIDLGFLNCYIAVARSGGIETIANEYSDRCTPACISLGSRTRAIGNAAKSQIVTNVR 60
Query: 65 NTIHGFKRLIGREFKDPHVQD-------ELKFLP---------YNVSENP------DGSI 102
NTIHGFK+L GR F DP VQ EL+ +P Y E P G +
Sbjct: 61 NTIHGFKKLHGRSFDDPIVQTERIRLPYELQKMPNGSVGVKVRYLEEERPFAIEQVTGML 120
Query: 103 GIKVKYLNEDRVFTP-----------------------EQITAMLLTKL-RETSEIALQC 138
K+K +E+ + P Q+ + +L ET+ +AL
Sbjct: 121 LAKLKETSENALKKPVADCVISIPSFFTDAERRSVMAAAQVAGLNCLRLMNETTAVALAY 180
Query: 139 NISDCVLSVPSFYTNAERKALLDAA----------------KIIASAANPYLGGRNIDYK 182
I +P+ +D K++A+ +PYLGGRN D
Sbjct: 181 GIYK--QDLPALDEKPRNVVFIDMGHSAYQVSVCAFNKGKLKVLATTFDPYLGGRNFDEA 238
Query: 183 LAKHFSQEFKQKYNIEPESNPRAFLRLLTEVEKLKKQMSANSTKLPFGIECFMNDIDVKG 242
L +F EFK KY I + N RA LRL E EKLKK MSAN++ LP IECFMND+DV
Sbjct: 239 LVDYFCDEFKTKYKINVKENSRALLRLYQECEKLKKLMSANASDLPLNIECFMNDLDVSS 298
Query: 243 EMCRSEMEELCKDVFENVEKTLKDCLEKSKLALSDIHSVEIVGGSSRIPAIKGLIEKIFQ 302
+M R++ E+LC + VE LK +E++ L DI+S+EIVGG++RIPA+K I F
Sbjct: 299 KMNRAQFEQLCASLLARVEPPLKAVMEQANLQREDIYSIEIVGGATRIPAVKEQITSFFL 358
Query: 303 KTPSTTLNQDEAVARGCALQCAMLS 327
K STTLN DEAVARGCALQCA+LS
Sbjct: 359 KDISTTLNADEAVARGCALQCAILS 383
>gnl|CDD|212667 cd10170, HSP70_NBD, Nucleotide-binding domain of the HSP70 family.
HSP70 (70-kDa heat shock protein) family chaperones
assist in protein folding and assembly and can direct
incompetent "client" proteins towards degradation.
Typically, HSP70s have a nucleotide-binding domain (NBD)
and a substrate-binding domain (SBD). The nucleotide
sits in a deep cleft formed between the two lobes of the
NBD. The two subdomains of each lobe change conformation
between ATP-bound, ADP-bound, and nucleotide-free
states. ATP binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
HSP70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). Some HSP70 family members are not
chaperones but instead, function as NEFs to remove ADP
from their HSP70 chaperone partners during the ATP
hydrolysis cycle, some may function as both chaperones
and NEFs.
Length = 369
Score = 257 bits (659), Expect = 6e-79
Identities = 114/375 (30%), Positives = 182/375 (48%), Gaps = 63/375 (16%)
Query: 7 IGIDFGNESCFIAAAR-AGGIETIANDYSLRATPSCVAFSDRNRIL-GVAAKNQTVTNMK 64
IGID G + +A G E I N R TPS V F +L G AAK Q + N +
Sbjct: 1 IGIDLGTTNSAVAYVDNGGKPEIIPNGEGSRTTPSVVYFDGDGEVLVGEAAKRQALDNPE 60
Query: 65 NTIHGFKRLIGREFKDPHVQDELKFLPYNVSENPDGSIGIKVKYLNEDRVFTPEQITAML 124
NT+ FKRLIGR+F DP VQ K V G+ I V + ++PE+++A++
Sbjct: 61 NTVGDFKRLIGRKFDDPLVQSAKK-----VIGVDRGAPIIPVPVELGGKKYSPEEVSALI 115
Query: 125 LTKLRETSEIALQCNISDCVLSVPSFYTNAERKALLD-----------------AA---- 163
L KL+E +E L +++ V++VP+++ +A+R+A + AA
Sbjct: 116 LKKLKEDAEAYLGEPVTEAVITVPAYFNDAQREATKEAAEIAGLNVVRLINEPTAAALAY 175
Query: 164 ----------------------------------KIIASAANPYLGGRNIDYKLAKHFSQ 189
+++A+ + +LGG + D LA + ++
Sbjct: 176 GLDKKDEKGRTILVFDLGGGTFDVSLVEVEGGVFEVLATGGDNHLGGDDFDNALADYLAE 235
Query: 190 EFKQKYNIEPESNPRAFLRLLTEVEKLKKQMSANSTKLPFGIECFMNDIDVKGEMCRSEM 249
+FK+K I+ +PRA RL EK K +S +S + + + D++ E+ R E
Sbjct: 236 KFKEKGGIDLRLDPRALRRLKEAAEKAKIALS-SSEEATITLPGLGSGGDLEVELTREEF 294
Query: 250 EELCKDVFENVEKTLKDCLEKSKLALSDIHSVEIVGGSSRIPAIKGLIEKIFQKTPSTTL 309
EEL + + E ++ L + L DI +V +VGGSSRIP ++ L+E++F K P ++
Sbjct: 295 EELIRPLLERTIDLVERVLADAGLKPEDIDAVLLVGGSSRIPLVRELLEELFGKKPLRSI 354
Query: 310 NQDEAVARGCALQCA 324
+ DEAVA G A+ A
Sbjct: 355 DPDEAVALGAAIYAA 369
>gnl|CDD|212675 cd10233, HSPA1-2_6-8-like_NBD, Nucleotide-binding domain of
HSPA1-A, -B, -L, HSPA-2, -6, -7, -8, and similar
proteins. This subfamily includes human HSPA1A (70-kDa
heat shock protein 1A, also known as HSP72; HSPA1;
HSP70I; HSPA1B; HSP70-1; HSP70-1A), HSPA1B (70-kDa heat
shock protein 1B, also known as HSPA1A; HSP70-2;
HSP70-1B), and HSPA1L (70-kDa heat shock protein 1-like,
also known as HSP70T; hum70t; HSP70-1L; HSP70-HOM). The
genes for these three HSPA1 proteins map in close
proximity on the major histocompatibility complex (MHC)
class III region on chromosome 6, 6p21.3. This subfamily
also includes human HSPA8 (heat shock 70kDa protein 8,
also known as LAP1; HSC54; HSC70; HSC71; HSP71; HSP73;
NIP71; HSPA10; the HSPA8 gene maps to 11q24.1), human
HSPA2 (70-kDa heat shock protein 2, also known as
HSP70-2; HSP70-3, the HSPA2 gene maps to 14q24.1), human
HSPA6 (also known as heat shock 70kDa protein 6
(HSP70B') gi 94717614, the HSPA6 gene maps to 1q23.3),
human HSPA7 (heat shock 70kDa protein 7 , also known as
HSP70B; the HSPA7 gene maps to 1q23.3) and Saccharmoyces
cerevisiae Stress-Seventy subfamily B/Ssb1p. This
subfamily belongs to the heat shock protein 70 (HSP70)
family of chaperones that assist in protein folding and
assembly and can direct incompetent "client" proteins
towards degradation. Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs).
Associations of polymorphisms within the MHC-III HSP70
gene locus with longevity, systemic lupus erythematosus,
Meniere's disease, noise-induced hearing loss,
high-altitude pulmonary edema, and coronary heart
disease, have been found. HSPA2 is involved in cancer
cell survival, is required for maturation of male
gametophytes, and is linked to male infertility. The
induction of HSPA6 is a biomarker of cellular stress.
HSPA8 participates in the folding and trafficking of
client proteins to different subcellular compartments,
and in the signal transduction and apoptosis process; it
has been shown to protect cardiomyocytes against
oxidative stress partly through an interaction with
alpha-enolase. S. cerevisiae Ssb1p, is part of the
ribosome-associated complex (RAC), it acts as a
chaperone for nascent polypeptides, and is important for
translation fidelity; Ssb1p is also a [PSI+]
prion-curing factor.
Length = 376
Score = 241 bits (617), Expect = 8e-73
Identities = 138/382 (36%), Positives = 202/382 (52%), Gaps = 68/382 (17%)
Query: 7 IGIDFGNE-SCFIAAARAGGIETIANDYSLRATPSCVAFSDRNRILGVAAKNQTVTNMKN 65
IGID G SC + + G +E IAND R TPS VAF+D R++G AAKNQ N N
Sbjct: 2 IGIDLGTTYSC-VGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTN 60
Query: 66 TIHGFKRLIGREFKDPHVQDELKFLPYNVSENPDGSIGIKVKYLNEDRVFTPEQITAMLL 125
T+ KRLIGR+F DP VQ ++K P+ V G I V+Y E + F PE+I++M+L
Sbjct: 61 TVFDAKRLIGRKFSDPVVQSDMKHWPFKVVNGG-GKPPIIVEYKGETKTFYPEEISSMVL 119
Query: 126 TKLRETSEIALQCNISDCVLSVPSFYTNAERKALLDAA--------KII----------- 166
TK++E +E L +++ V++VP+++ +++R+A DA +II
Sbjct: 120 TKMKEIAEAYLGKTVTNAVITVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYG 179
Query: 167 ------------------------------------ASAANPYLGGRNIDYKLAKHFSQE 190
A+A + +LGG + D +L HF QE
Sbjct: 180 LDKKGGGERNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLVNHFVQE 239
Query: 191 FKQKYNIEPESNPRAFLRLLTEVEKLKKQMSANSTKLPFGIECFMNDIDVKGEMCRSEME 250
FK+K+ + N RA RL T E+ K+ +S+ ST+ I+ ID + R+ E
Sbjct: 240 FKRKHKKDISGNKRALRRLRTACERAKRTLSS-STQASIEIDSLFEGIDFYTSITRARFE 298
Query: 251 ELCKDVF----ENVEKTLKDCLEKSKLALSDIHSVEIVGGSSRIPAIKGLIEKIFQ-KTP 305
ELC D+F E VEK L+D +KL S IH + +VGGS+RIP ++ L++ F K
Sbjct: 299 ELCADLFRGTLEPVEKVLRD----AKLDKSQIHDIVLVGGSTRIPKVQKLLQDFFNGKEL 354
Query: 306 STTLNQDEAVARGCALQCAMLS 327
+ ++N DEAVA G A+Q A+LS
Sbjct: 355 NKSINPDEAVAYGAAVQAAILS 376
>gnl|CDD|212681 cd10241, HSPA5-like_NBD, Nucleotide-binding domain of human HSPA5
and similar proteins. This subfamily includes human
HSPA5 (also known as 70-kDa heat shock protein 5,
glucose-regulated protein 78/GRP78, and immunoglobulin
heavy chain-binding protein/BIP, MIF2; the gene encoding
HSPA5 maps to 9q33.3.), Sacchaormyces cerevisiae Kar2p
(also known as Grp78p), and related proteins. This
subfamily belongs to the heat shock protein 70 (HSP70)
family of chaperones that assist in protein folding and
assembly and can direct incompetent "client" proteins
towards degradation. HSPA5 and Kar2p are chaperones of
the endoplasmic reticulum (ER). Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs).
Multiple ER DNAJ domain proteins have been identified
and may exist in distinct complexes with HSPA5 in
various locations in the ER, for example DNAJC3-p58IPK
in the lumen. HSPA5-NEFs include SIL1 and an atypical
HSP70 family protein HYOU1/ORP150. The ATPase activity
of Kar2p is stimulated by the NEFs: Sil1p and Lhs1p.
Length = 374
Score = 240 bits (614), Expect = 2e-72
Identities = 134/375 (35%), Positives = 202/375 (53%), Gaps = 61/375 (16%)
Query: 5 SVIGIDFGNE-SCFIAAARAGGIETIANDYSLRATPSCVAFSDRNRILGVAAKNQTVTNM 63
+VIGID G SC + + G +E IAND R TPS VAF+D R++G AAKNQ +N
Sbjct: 2 TVIGIDLGTTYSC-VGVFKNGRVEIIANDQGNRITPSYVAFTDGERLIGDAAKNQATSNP 60
Query: 64 KNTIHGFKRLIGREFKDPHVQDELKFLPYNVSENPDGSIGIKVKYLNEDRVFTPEQITAM 123
+NTI KRLIGR+F D VQ ++K LPY V N DG I+V E + F+PE+I+AM
Sbjct: 61 ENTIFDVKRLIGRKFDDKEVQKDIKLLPYKVV-NKDGKPYIEVDVKGEKKTFSPEEISAM 119
Query: 124 LLTKLRETSEIALQCNISDCVLSVPSFYTNAERKALLD-----------------AAKI- 165
+LTK++E +E L + V++VP+++ +A+R+A D AA I
Sbjct: 120 VLTKMKEIAEAYLGKKVKHAVVTVPAYFNDAQRQATKDAGTIAGLNVVRIINEPTAAAIA 179
Query: 166 ------------------------------------IASAANPYLGGRNIDYKLAKHFSQ 189
+A+ + +LGG + D ++ +HF +
Sbjct: 180 YGLDKKGGEKNILVFDLGGGTFDVSLLTIDNGVFEVLATNGDTHLGGEDFDQRVMEHFIK 239
Query: 190 EFKQKYNIEPESNPRAFLRLLTEVEKLKKQMSA-NSTKLPFGIECFMNDIDVKGEMCRSE 248
FK+K+ + + RA +L EVEK K+ +S+ + T++ IE + D + R++
Sbjct: 240 LFKKKHGKDISKDKRALQKLRREVEKAKRALSSQHQTRIE--IESLFDGEDFSETLTRAK 297
Query: 249 MEELCKDVFENVEKTLKDCLEKSKLALSDIHSVEIVGGSSRIPAIKGLIEKIFQ-KTPST 307
EEL D+F+ K +K LE + L SDI + +VGGS+RIP ++ L+++ F K PS
Sbjct: 298 FEELNMDLFKKTLKPVKKVLEDADLKKSDIDEIVLVGGSTRIPKVQQLLKEFFNGKEPSR 357
Query: 308 TLNQDEAVARGCALQ 322
+N DEAVA G A+Q
Sbjct: 358 GINPDEAVAYGAAVQ 372
>gnl|CDD|240227 PTZ00009, PTZ00009, heat shock 70 kDa protein; Provisional.
Length = 653
Score = 246 bits (629), Expect = 1e-71
Identities = 184/670 (27%), Positives = 307/670 (45%), Gaps = 138/670 (20%)
Query: 7 IGIDFGNESCFIAAARAGGIETIANDYSLRATPSCVAFSDRNRILGVAAKNQTVTNMKNT 66
IGID G + + +E IAND R TPS VAF+D R++G AAKNQ N +NT
Sbjct: 7 IGIDLGTTYSCVGVWKNENVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVARNPENT 66
Query: 67 IHGFKRLIGREFKDPHVQDELKFLPYNVSENPDGSIGIKVKYLNEDRVFTPEQITAMLLT 126
+ KRLIGR+F D VQ ++K P+ V+ D I+V Y E + F PE+I++M+L
Sbjct: 67 VFDAKRLIGRKFDDSVVQSDMKHWPFKVTTGGDDKPMIEVTYQGEKKTFHPEEISSMVLQ 126
Query: 127 KLRETSEIALQCNISDCVLSVPSFYTNAERKAL--------LDAAKII------------ 166
K++E +E L + D V++VP+++ +++R+A L+ +II
Sbjct: 127 KMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGL 186
Query: 167 -----------------------------------ASAANPYLGGRNIDYKLAKHFSQEF 191
A+A + +LGG + D +L + Q+F
Sbjct: 187 DKKGDGEKNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLVEFCVQDF 246
Query: 192 KQKYN-IEPESNPRAFLRLLTEVEKLKKQMSANSTKLPFGIECFMNDIDVKGEMCRSEME 250
K+K + SN RA RL T+ E+ K+ +S+ ST+ I+ ID + R+ E
Sbjct: 247 KRKNRGKDLSSNQRALRRLRTQCERAKRTLSS-STQATIEIDSLFEGIDYNVTISRARFE 305
Query: 251 ELCKDVFEN----VEKTLKDCLEKSKLALSDIHSVEIVGGSSRIPAIKGLIEKIFQ-KTP 305
ELC D F N VEK LKD + + +H V +VGGS+RIP ++ LI+ F K P
Sbjct: 306 ELCGDYFRNTLQPVEKVLKD----AGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFNGKEP 361
Query: 306 STTLNQDEAVARGCALQCAMLS--PAVRVRDFSVTDLQVYPVVMEWDPSPNEPKDSKNFI 363
++N DEAVA G A+Q A+L+ + +V+D + D+ + +E +N
Sbjct: 362 CKSINPDEAVAYGAAVQAAILTGEQSSQVQDLLLLDVTPLSLGLETAGGVMTKLIERN-- 419
Query: 364 TVFPEMHAAPFSKKMTFYQNKPFAIQLYYEGN--VPYPSKFIGKYQINDVKPGPDNASQ- 420
T P + F+ T+ N+P + +EG + + +GK+ ++ + P P Q
Sbjct: 420 TTIPTKKSQIFT---TYADNQPGVLIQVFEGERAMTKDNNLLGKFHLDGIPPAPRGVPQI 476
Query: 421 KVTVKVRVNMDGVIGVIAASMVEKVENSGDTESMDVENTEEENGQKQEAGSENTENKAEK 480
+VT + N G++ S +K ++G + + + N + G+ +A + N+AEK
Sbjct: 477 EVTFDIDAN-----GILNVSAEDK--STGKSNKITITN---DKGRLSKADIDRMVNEAEK 526
Query: 481 TQEGQSEDAEKKAAEAKKKVVSKTLDLTISATTHGLSPEQLNAHTELEGKMIADDKLEKE 540
+ A+D+ +E
Sbjct: 527 YK--------------------------------------------------AEDEANRE 536
Query: 541 RIDARNCLEEYVYDLRNKLGSEEEFALYIAADDASKLSTQLDETENWLYEEGADVNKSVY 600
R++A+N LE Y Y ++N L +E+ ++ D + + +DE WL E+ K +
Sbjct: 537 RVEAKNGLENYCYSMKNTL-QDEKVKGKLSDSDKATIEKAIDEALEWL-EKNQLAEKEEF 594
Query: 601 ISKLDELKAI 610
K E++++
Sbjct: 595 EHKQKEVESV 604
>gnl|CDD|223520 COG0443, DnaK, Molecular chaperone [Posttranslational modification,
protein turnover, chaperones].
Length = 579
Score = 243 bits (622), Expect = 3e-71
Identities = 168/679 (24%), Positives = 277/679 (40%), Gaps = 160/679 (23%)
Query: 1 MAGMS-VIGIDFGNESCFIAAARAGG-IETIANDYSLRATPSCVAFSDRNRIL-GVAAKN 57
M+ IGID G + +A R GG + I N R TPS VAFS +L G AAK
Sbjct: 1 MSTAKKAIGIDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKR 60
Query: 58 QTVTNMKNTIHGFKRLIGREFKDPHVQDELKFLPYNVSENPDGSIGIKVKYLNEDRVFTP 117
Q V N +NTI KR IGR GS G+K+ + + +TP
Sbjct: 61 QAVDNPENTIFSIKRKIGR-----------------------GSNGLKISVEVDGKKYTP 97
Query: 118 EQITAMLLTKLRETSEIALQCNISDCVLSVPSFYTNAERKALLDAAKI------------ 165
E+I+AM+LTKL+E +E L ++D V++VP+++ +A+R+A DAA+I
Sbjct: 98 EEISAMILTKLKEDAEAYLGEKVTDAVITVPAYFNDAQRQATKDAARIAGLNVLRLINEP 157
Query: 166 -----------------------------------------IASAANPYLGGRNIDYKLA 184
+A+ + +LGG + D L
Sbjct: 158 TAAALAYGLDKGKEKTVLVYDLGGGTFDVSLLEIGDGVFEVLATGGDNHLGGDDFDNALI 217
Query: 185 KHFSQEFKQKYNIEPESNPRAFLRLLTEVEKLKKQMSANSTKLPFGIECFMNDIDVKGEM 244
+ EFK K I+ S+ A RL EK K ++S+ + + DID+ E+
Sbjct: 218 DYLVMEFKGKGGIDLRSDKAALQRLREAAEKAKIELSSATQ-TSINLPSIGGDIDLLKEL 276
Query: 245 CRSEMEELCKDVFENVEKTLKDCLEKSKLALSDIHSVEIVGGSSRIPAIKGLIEKIFQKT 304
R++ EEL D+ E + ++ L+ + L SDI V +VGGS+RIPA++ L+++ F K
Sbjct: 277 TRAKFEELILDLLERTIEPVEQALKDAGLEKSDIDLVILVGGSTRIPAVQELVKEFFGKE 336
Query: 305 PSTTLNQDEAVARGCALQCAMLSPAVRVRDFSVTDLQVYPVVMEWDPSPNEPKDSKNFIT 364
P ++N DEAVA G A+Q A+LS V D + D+ + +E P +N T
Sbjct: 337 PEKSINPDEAVALGAAIQAAVLSG--EVPDVLLLDVIPLSLGIETLGGVRTPIIERN--T 392
Query: 365 VFPEMHAAPFSKKMTFYQNKPFAIQLYYEGNVPY--PSKFIGKYQINDVKPGPDNASQKV 422
P + FS T + ++G +K +G+++++ + P P Q
Sbjct: 393 TIPVKKSQEFS---TAADGQTAVAIHVFQGEREMAADNKSLGRFELDGIPPAPRGVPQIE 449
Query: 423 TVKVRVNMDGVIGVIAASMVEKVENSGDTESMDVENTEEENGQKQEAGSENTENKAEK-T 481
V + NG + K + T
Sbjct: 450 ---------------------------------VTFDIDANGILNVTAKDLGTGKEQSIT 476
Query: 482 QEGQSEDAEKKAAEAKKKVVSKTLDLTISATTHGLSPEQLNAHTELEGKMIADDKLEKER 541
+ S ++++ + +A DK +E
Sbjct: 477 IKASSGLSDEEIERMVE-----------------------DAEANAA-----LDKKFREL 508
Query: 542 IDARNCLEEYVYDLRNKLGSEEEFALYIAADDASKLSTQLDETENWLYEEGADVNKSVYI 601
++ARN E +Y L L +E ++ ++ K+ + + E L E K
Sbjct: 509 VEARNEAESLIYSLEKAL---KEIVK-VSEEEKEKIEEAITDLEEALEGE-----KEEIK 559
Query: 602 SKLDELKAIGEKIRQRKVD 620
+K++EL+ + +K+ ++K
Sbjct: 560 AKIEELQEVTQKLAEKKYQ 578
>gnl|CDD|212687 cd11737, HSPA4_NBD, Nucleotide-binding domain of HSPA4. Human
HSPA4 (also known as 70-kDa heat shock protein 4, APG-2,
HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps
to 5q31.1) responds to acidic pH stress, is involved in
the radioadaptive response, is required for normal
spermatogenesis and is overexpressed in hepatocellular
carcinoma. It participates in a pathway along with NBS1
(Nijmegen breakage syndrome 1, also known as p85 or
nibrin), heat shock transcription factor 4b (HDF4b), and
HSPA14 (belonging to a different HSP70 subfamily) that
induces tumor migration, invasion, and transformation.
HSPA4 expression in sperm was increased in men with
oligozoospermia, especially in those with varicocele.
HSPA4 belongs to the 105/110 kDa heat shock protein
(HSP105/110) subfamily of the HSP70-like family.
HSP105/110s are believed to function generally as
co-chaperones of HSP70 chaperones, acting as nucleotide
exchange factors (NEFs), to remove ADP from their HSP70
chaperone partners during the ATP hydrolysis cycle.
HSP70 chaperones assist in protein folding and assembly,
and can direct incompetent "client" proteins towards
degradation. Like HSP70 chaperones, HSP105/110s have an
N-terminal nucleotide-binding domain (NBD) and a
C-terminal substrate-binding domain (SBD). For HSP70
chaperones, the nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. Hsp70 chaperone
activity is also regulated by J-domain proteins.
Length = 383
Score = 211 bits (538), Expect = 2e-61
Identities = 94/161 (58%), Positives = 125/161 (77%)
Query: 5 SVIGIDFGNESCFIAAARAGGIETIANDYSLRATPSCVAFSDRNRILGVAAKNQTVTNMK 64
SV+GID G +SC++A ARAGGIETIAN+YS R TP+C++F +NR +G AAK+Q ++N K
Sbjct: 1 SVVGIDLGFQSCYVAVARAGGIETIANEYSDRCTPACISFGPKNRSIGAAAKSQVISNAK 60
Query: 65 NTIHGFKRLIGREFKDPHVQDELKFLPYNVSENPDGSIGIKVKYLNEDRVFTPEQITAML 124
NT+ GFKR GR F DP VQ E L Y++ + P GS GIKV Y+ E+R FT EQ+TAML
Sbjct: 61 NTVQGFKRFHGRAFSDPFVQAEKPSLAYDLVQLPTGSTGIKVMYMEEERNFTTEQVTAML 120
Query: 125 LTKLRETSEIALQCNISDCVLSVPSFYTNAERKALLDAAKI 165
LTKL+ET+E AL+ + DCV+SVP FYT+AER++++DA +I
Sbjct: 121 LTKLKETAESALKKPVVDCVVSVPCFYTDAERRSVMDATQI 161
Score = 204 bits (519), Expect = 7e-59
Identities = 92/164 (56%), Positives = 116/164 (70%)
Query: 164 KIIASAANPYLGGRNIDYKLAKHFSQEFKQKYNIEPESNPRAFLRLLTEVEKLKKQMSAN 223
K++A+A + LGGR D L +F +EF +KY ++ +S RA LRL E EKLKK MSAN
Sbjct: 220 KVLATAFDTTLGGRKFDEVLVNYFCEEFGKKYKLDIKSKIRALLRLSQECEKLKKLMSAN 279
Query: 224 STKLPFGIECFMNDIDVKGEMCRSEMEELCKDVFENVEKTLKDCLEKSKLALSDIHSVEI 283
++ LP IECFMNDIDV G M R + E+C D+ VE L+ LE++KL DI++VEI
Sbjct: 280 ASDLPLNIECFMNDIDVSGTMNRGKFLEMCDDLLARVEPPLRSVLEQAKLKKEDIYAVEI 339
Query: 284 VGGSSRIPAIKGLIEKIFQKTPSTTLNQDEAVARGCALQCAMLS 327
VGG++RIPA+K I K F K STTLN DEAVARGCALQCA+LS
Sbjct: 340 VGGATRIPAVKEKISKFFGKEVSTTLNADEAVARGCALQCAILS 383
>gnl|CDD|212689 cd11739, HSPH1_NBD, Nucleotide-binding domain of HSPH1. Human
HSPH1 (also known as heat shock 105kDa/110kDa protein 1,
HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene
maps to 13q12.3) suppresses the aggregation of denatured
proteins caused by heat shock in vitro, and may
substitute for HSP70 family proteins to suppress the
aggregation of denatured proteins in cells under severe
stress. It reduces the protein aggregation and
cytotoxicity associated with Polyglutamine (PolyQ)
diseases, including Huntington's disease, which are a
group of inherited neurodegenerative disorders sharing
the characteristic feature of having insoluble protein
aggregates in neurons. The expression of HSPH1 is
elevated in various malignant tumors, including
malignant melanoma, and there is a direct correlation
between HSPH1 expression and B-cell non-Hodgkin
lymphomas (B-NHLs) aggressiveness and proliferation.
HSPH1 belongs to the 105/110 kDa heat shock protein
(HSP105/110) subfamily of the HSP70-like family.
HSP105/110s are believed to function generally as
co-chaperones of HSP70 chaperones, acting as nucleotide
exchange factors (NEFs), to remove ADP from their HSP70
chaperone partners during the ATP hydrolysis cycle.
HSP70 chaperones assist in protein folding and assembly,
and can direct incompetent "client" proteins towards
degradation. Like HSP70 chaperones, HSP105/110s have an
N-terminal nucleotide-binding domain (NBD) and a
C-terminal substrate-binding domain (SBD). For HSP70
chaperones, the nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. Hsp70 chaperone
activity is also regulated by J-domain proteins.
Length = 383
Score = 210 bits (535), Expect = 4e-61
Identities = 95/164 (57%), Positives = 120/164 (73%)
Query: 164 KIIASAANPYLGGRNIDYKLAKHFSQEFKQKYNIEPESNPRAFLRLLTEVEKLKKQMSAN 223
K++ +A +P+LGG+N D KL +HF EFK KY ++ +S RA LRL E EKLKK MS+N
Sbjct: 220 KVLGTAFDPFLGGKNFDEKLVEHFCAEFKTKYKLDAKSKIRALLRLYQECEKLKKLMSSN 279
Query: 224 STKLPFGIECFMNDIDVKGEMCRSEMEELCKDVFENVEKTLKDCLEKSKLALSDIHSVEI 283
ST LP IECFMND DV G+M RS+ EELC D+ + +E L LE++ L + D+ +VEI
Sbjct: 280 STDLPLNIECFMNDKDVSGKMNRSQFEELCADLLQRIEVPLYSLLEQTHLKVEDVSAVEI 339
Query: 284 VGGSSRIPAIKGLIEKIFQKTPSTTLNQDEAVARGCALQCAMLS 327
VGG++RIPA+K I K F K STTLN DEAVARGCALQCA+LS
Sbjct: 340 VGGATRIPAVKERIAKFFGKDVSTTLNADEAVARGCALQCAILS 383
Score = 200 bits (511), Expect = 1e-57
Identities = 89/162 (54%), Positives = 125/162 (77%)
Query: 5 SVIGIDFGNESCFIAAARAGGIETIANDYSLRATPSCVAFSDRNRILGVAAKNQTVTNMK 64
SV+G D G +SC+IA ARAGGIET+AN++S R TPS ++F +NR +GVAAKNQ +T+
Sbjct: 1 SVVGFDVGFQSCYIAVARAGGIETVANEFSDRCTPSVISFGSKNRTIGVAAKNQQITHAN 60
Query: 65 NTIHGFKRLIGREFKDPHVQDELKFLPYNVSENPDGSIGIKVKYLNEDRVFTPEQITAML 124
NT+ FKR GR F DP VQ E + L Y++ +G +G+KV Y+ E+ +F+ EQITAML
Sbjct: 61 NTVSNFKRFHGRAFNDPFVQKEKENLSYDLVPLKNGGVGVKVMYMGEEHLFSVEQITAML 120
Query: 125 LTKLRETSEIALQCNISDCVLSVPSFYTNAERKALLDAAKII 166
LTKL+ET+E L+ ++DCV+SVPSF+T+AER+++LDAA+I+
Sbjct: 121 LTKLKETAENNLKKPVTDCVISVPSFFTDAERRSVLDAAQIV 162
>gnl|CDD|212676 cd10234, HSPA9-Ssq1-like_NBD, Nucleotide-binding domain of human
HSPA9 and similar proteins. This subfamily includes
human mitochondrial HSPA9 (also known as 70-kDa heat
shock protein 9, CSA; MOT; MOT2; GRP75; PBP74; GRP-75;
HSPA9B; MTHSP75; the gene encoding HSPA9 maps to
5q31.1), Escherichia coli DnaK, Saccharomyces cerevisiae
Stress-seventy subfamily Q protein 1/Ssq1p (also called
Ssc2p, Ssh1p, mtHSP70 homolog), and S. cerevisiae
Stress-Seventy subfamily C/Ssc1p (also called mtHSP70,
Endonuclease SceI 75 kDa subunit). It belongs to the
heat shock protein 70 (HSP70) family of chaperones that
assist in protein folding and assembly, and can direct
incompetent "client" proteins towards degradation.
Typically, HSP70s have a nucleotide-binding domain (NBD)
and a substrate-binding domain (SBD). The nucleotide
sits in a deep cleft formed between the two lobes of the
NBD. The two subdomains of each lobe change conformation
between ATP-bound, ADP-bound, and nucleotide-free
states. ATP binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
Hsp70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs); for Escherichia coli DnaK, these are the
DnaJ and GrpE, respectively.
Length = 376
Score = 195 bits (499), Expect = 7e-56
Identities = 109/383 (28%), Positives = 187/383 (48%), Gaps = 72/383 (18%)
Query: 6 VIGIDFGNESCFIAAARAGGIETIANDYSLRATPSCVAFSDRNRIL-GVAAKNQTVTNMK 64
+IGID G + +A G I N R TPS VAF+ + L G AK Q VTN +
Sbjct: 4 IIGIDLGTTNSCVAVMEGGEPTVIPNAEGSRTTPSVVAFTKKGERLVGQPAKRQAVTNPE 63
Query: 65 NTIHGFKRLIGREFKDPHVQDELKFLPYNVSENPDGSIGIKVKYLNEDRVFTPEQITAML 124
NTI KR +GR+F + + ++ + V E + + I + + +TP++I+AM+
Sbjct: 64 NTIFSIKRFMGRKFDEVEEERKVPY-KVVVDEGGNYKVEID----SNGKDYTPQEISAMI 118
Query: 125 LTKLRETSEIALQCNISDCVLSVPSFYTNAERKALLDAAKI------------------- 165
L KL+E +E L +++ V++VP+++ +++R+A DA KI
Sbjct: 119 LQKLKEDAEAYLGEKVTEAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAY 178
Query: 166 ----------------------------------IASAANPYLGGRNIDYKLAKHFSQEF 191
+A+ + +LGG + D ++ +EF
Sbjct: 179 GLDKKGNEKILVYDLGGGTFDVSILEIGDGVFEVLATNGDTHLGGDDFDQRIIDWLVEEF 238
Query: 192 KQKYNIEPESNPRAFLRLLTEVEKLKKQMSANST---KLPFGIECFMND-----IDVKGE 243
K++ I+ + A RL EK K ++S+ + LPF + +++
Sbjct: 239 KKEEGIDLRKDKMALQRLKEAAEKAKIELSSVTETEINLPF---ITADATGPKHLEMT-- 293
Query: 244 MCRSEMEELCKDVFENVEKTLKDCLEKSKLALSDIHSVEIVGGSSRIPAIKGLIEKIFQK 303
+ R++ EEL +D+ E + +K L+ +KL+ SDI V +VGGS+RIPA++ L++++F K
Sbjct: 294 LTRAKFEELTEDLVERTIEPVKQALKDAKLSPSDIDEVILVGGSTRIPAVQELVKELFGK 353
Query: 304 TPSTTLNQDEAVARGCALQCAML 326
P+ +N DE VA G A+Q +L
Sbjct: 354 EPNKGVNPDEVVAIGAAIQGGVL 376
>gnl|CDD|212684 cd11734, Ssq1_like_NBD, Nucleotide-binding domain of Saccharomyces
cerevisiae Ssq1 and similar proteins. Ssq1p (also
called Stress-seventy subfamily Q protein 1, Ssc2p,
Ssh1p, mtHSP70 homolog) belongs to the heat shock
protein 70 (HSP70) family of chaperones that assist in
protein folding and assembly, and can direct incompetent
"client" proteins towards degradation. Typically, HSP70s
have a nucleotide-binding domain (NBD) and a
substrate-binding domain (SBD). The nucleotide sits in a
deep cleft formed between the two lobes of the NBD. The
two subdomains of each lobe change conformation between
ATP-bound, ADP-bound, and nucleotide-free states. ATP
binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
Hsp70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). S. cerevisiae Ssq1p is a mitochondrial
chaperone that is involved in iron-sulfur (Fe/S) center
biogenesis. Ssq1p plays a role in the maturation of
Yfh1p, a nucleus-encoded mitochondrial protein involved
in iron homeostasis (and a homolog of human frataxin,
implicated in the neurodegenerative disease,
Friedreich's ataxia).
Length = 373
Score = 187 bits (476), Expect = 8e-53
Identities = 107/381 (28%), Positives = 180/381 (47%), Gaps = 65/381 (17%)
Query: 3 GMSVIGIDFGNESCFIAAARAGGIETIANDYSLRATPSCVAFSDRNRILGVAAKNQTVTN 62
++IGID G + +A I N R TPS V+F+ ++G AAK Q +
Sbjct: 1 RSTIIGIDLGTTNSCVAVIDKTTPVIIENAEGKRTTPSIVSFTKTGILVGEAAKRQEALH 60
Query: 63 MKNTIHGFKRLIGREFKDPHVQDELKFLPYNVSENPDGSIGIKVKYLNEDRVFTPEQITA 122
+NT KRLIGR+FKD VQ ++K Y + E +G I + ++P QI +
Sbjct: 61 PENTFFATKRLIGRQFKDVEVQRKMKVPYYKIVEGRNGDAWIYTN----GKKYSPSQIAS 116
Query: 123 MLLTKLRETSEIALQCNISDCVLSVPSFYTNAERKAL--------LDAAKII-------- 166
+L KL++T+E L + + V++VP+++ +++R+A L +II
Sbjct: 117 FVLKKLKKTAEAYLGKRVDEAVITVPAYFNDSQRQATKDAGTLAGLKVLRIINEPTAAAL 176
Query: 167 --------------------------------------ASAANPYLGGRNIDYKLAKHFS 188
A+ + LGG + D + ++
Sbjct: 177 AYGIDKRKENKNIAVYDLGGGTFDISILNIEDGVFEVKATNGDTMLGGEDFDNAIVQYII 236
Query: 189 QEFKQKYNIEPESNPRAFLRLLTEVEKLKKQMSANST---KLPFGIECFMNDIDVKGEMC 245
+EFK+KY I+ N +A R+ EK K ++S++ +LP+ ++ +
Sbjct: 237 KEFKRKYKIDLTRNKKAIQRIKEAAEKAKIELSSSEESVIELPY----LDGPKHLRITIT 292
Query: 246 RSEMEELCKDVFENVEKTLKDCLEKSKLALSDIHSVEIVGGSSRIPAIKGLIEKIFQKTP 305
R E E+L K + + K CL+ + L DI V +VGG +R+P I+ ++++IF K P
Sbjct: 293 RREFEQLRKSICKRTIYPCKQCLKDAGLRKKDIDEVILVGGMTRMPYIQNVVQEIFGKKP 352
Query: 306 STTLNQDEAVARGCALQCAML 326
S ++N DEAVA G A+Q ++L
Sbjct: 353 SKSVNPDEAVALGAAIQGSIL 373
>gnl|CDD|212683 cd11733, HSPA9-like_NBD, Nucleotide-binding domain of human HSPA9,
Escherichia coli DnaK, and similar proteins. This
subgroup includes human mitochondrial HSPA9 (also known
as 70-kDa heat shock protein 9, CSA; MOT; MOT2; GRP75;
PBP74; GRP-75; HSPA9B; MTHSP75; the gene encoding HSPA9
maps to 5q31.1), Escherichia coli DnaK, and
Saccharomyces cerevisiae Stress-Seventy subfamily
C/Ssc1p (also called mtHSP70, Endonuclease SceI 75 kDa
subunit). It belongs to the heat shock protein 70
(HSP70) family of chaperones that assist in protein
folding and assembly, and can direct incompetent
"client" proteins towards degradation. Typically, HSP70s
have a nucleotide-binding domain (NBD) and a
substrate-binding domain (SBD). The nucleotide sits in a
deep cleft formed between the two lobes of the NBD. The
two subdomains of each lobe change conformation between
ATP-bound, ADP-bound, and nucleotide-free states. ATP
binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
Hsp70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs); for Escherichia coli DnaK, these are the
DnaJ and GrpE, respectively. HSPA9 is involved in
multiple processses including mitochondrial import,
antigen processing, control of cellular proliferation
and differentiation, and regulation of glucose
responses. During glucose deprivation-induced cellular
stress, HSPA9 plays an important role in the suppression
of apoptosis by inhibiting a conformational change in
Bax that allow the release of cytochrome c. DnaK
modulates the heat shock response in Escherichia coli.
It protects E. coli from protein carbonylation, an
irreversible oxidative modification that increases
during organism aging and bacterial growth arrest. Under
severe thermal stress, it functions as part of a
bi-chaperone system: the DnaK system and the
ring-forming AAA+ chaperone ClpB (Hsp104) system, to
promote cell survival. DnaK has also been shown to
cooperate with GroEL and the ribosome-associated
Escherichia coli Trigger Factor in the proper folding of
cytosolic proteins. S. cerevisiae Ssc1p is the major
HSP70 chaperone of the mitochondrial matrix, promoting
translocation of proteins from the cytosol, across the
inner membrane, to the matrix, and their subsequent
folding. Ssc1p interacts with Tim44, a peripheral inner
membrane protein associated with the TIM23 protein
translocase. It is also a subunit of the endoSceI
site-specific endoDNase and is required for full
endoSceI activity. Ssc1p plays roles in the import of
Yfh1p, a nucleus-encoded mitochondrial protein involved
in iron homeostasis (and a homolog of human frataxin,
implicated in the neurodegenerative disease,
Friedreich's ataxia). Ssc1 also participates in
translational regulation of cytochrome c oxidase (COX)
biogenesis by interacting with Mss51 and
Mss51-containing complexes.
Length = 377
Score = 185 bits (471), Expect = 5e-52
Identities = 112/384 (29%), Positives = 186/384 (48%), Gaps = 73/384 (19%)
Query: 6 VIGIDFGNESCFIAAARAGGIETIANDYSLRATPSCVAFSDRN-RILGVAAKNQTVTNMK 64
VIGID G + +A + I N R TPS VAF+ R++G+ AK Q VTN +
Sbjct: 4 VIGIDLGTTNSCVAVMEGKTPKVIENAEGARTTPSVVAFTKDGERLVGMPAKRQAVTNPE 63
Query: 65 NTIHGFKRLIGREFKDPHVQDELKFLPYNVSENPDGSIGIKVKYLNEDRVFTPEQITAML 124
NT++ KRLIGR F DP VQ ++K +PY + + +G ++ + ++P QI A +
Sbjct: 64 NTLYATKRLIGRRFDDPEVQKDIKNVPYKIVKASNGDAWVEAH----GKKYSPSQIGAFV 119
Query: 125 LTKLRETSEIALQCNISDCVLSVPSFYTNAERKALLDAA--------------------- 163
L K++ET+E L + + V++VP+++ +++R+A DA
Sbjct: 120 LMKMKETAEAYLGKPVKNAVITVPAYFNDSQRQATKDAGQIAGLNVLRVINEPTAAALAY 179
Query: 164 -------KIIA-------------------------SAANPYLGGRNIDYKLAKHFSQEF 191
K+IA + + +LGG + D L +H +EF
Sbjct: 180 GLDKKDDKVIAVYDLGGGTFDISILEIQKGVFEVKSTNGDTFLGGEDFDNALLRHLVKEF 239
Query: 192 KQKYNIEPESNPRAFLRLLTEVEKLKKQMSANST---KLPFGIECFMNDIDVKG------ 242
K++ I+ + A RL EK K ++S++ LP+ D G
Sbjct: 240 KKEQGIDLTKDNMALQRLREAAEKAKIELSSSLQTDINLPY------ITADASGPKHLNM 293
Query: 243 EMCRSEMEELCKDVFENVEKTLKDCLEKSKLALSDIHSVEIVGGSSRIPAIKGLIEKIFQ 302
++ R++ E L D+ + + K L+ + ++ SDI V +VGG +R+P ++ +++IF
Sbjct: 294 KLTRAKFESLVGDLIKRTIEPCKKALKDAGVSKSDIGEVILVGGMTRMPKVQETVKEIFG 353
Query: 303 KTPSTTLNQDEAVARGCALQCAML 326
K PS +N DEAVA G A+Q +L
Sbjct: 354 KEPSKGVNPDEAVAIGAAIQGGVL 377
>gnl|CDD|233830 TIGR02350, prok_dnaK, chaperone protein DnaK. Members of this
family are the chaperone DnaK, of the DnaK-DnaJ-GrpE
chaperone system. All members of the seed alignment were
taken from completely sequenced bacterial or archaeal
genomes and (except for Mycoplasma sequence) found
clustered with other genes of this systems. This model
excludes DnaK homologs that are not DnaK itself, such as
the heat shock cognate protein HscA (TIGR01991).
However, it is not designed to distinguish among DnaK
paralogs in eukaryotes. Note that a number of dnaK genes
have shadow ORFs in the same reverse (relative to dnaK)
reading frame, a few of which have been assigned
glutamate dehydrogenase activity. The significance of
this observation is unclear; lengths of such shadow ORFs
are highly variable as if the presumptive protein
product is not conserved [Protein fate, Protein folding
and stabilization].
Length = 595
Score = 189 bits (481), Expect = 2e-51
Identities = 115/384 (29%), Positives = 193/384 (50%), Gaps = 65/384 (16%)
Query: 6 VIGIDFGNESCFIAAARAGGIETIANDYSLRATPSCVAFS-DRNRILGVAAKNQTVTNMK 64
+IGID G + +A G I N R TPS VAF+ + R++G AK Q VTN +
Sbjct: 2 IIGIDLGTTNSCVAVMEGGEPVVIPNAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNPE 61
Query: 65 NTIHGFKRLIGREFKDPHVQDELKFLPYNVSENPDGSIGIKVKYLNEDRVFTPEQITAML 124
NTI+ KR +GR F + V +E K +PY V G + +KV + + +TP++I+AM+
Sbjct: 62 NTIYSIKRFMGRRFDE--VTEEAKRVPYKV-VGDGGDVRVKV----DGKEYTPQEISAMI 114
Query: 125 LTKLRETSEIALQCNISDCVLSVPSFYTNAERKAL--------LDAAKII---------- 166
L KL++ +E L +++ V++VP+++ +A+R+A L+ +II
Sbjct: 115 LQKLKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAY 174
Query: 167 ------------------------------------ASAANPYLGGRNIDYKLAKHFSQE 190
++A + +LGG + D ++ + E
Sbjct: 175 GLDKSKKDEKILVFDLGGGTFDVSILEIGDGVFEVLSTAGDTHLGGDDFDQRIIDWLADE 234
Query: 191 FKQKYNIEPESNPRAFLRLLTEVEKLKKQMS-ANSTK--LPFGIECFMNDIDVKGEMCRS 247
FK++ I+ + A RL EK K ++S ST+ LPF ++ + R+
Sbjct: 235 FKKEEGIDLSKDKMALQRLKEAAEKAKIELSSVLSTEINLPFITADASGPKHLEMTLTRA 294
Query: 248 EMEELCKDVFENVEKTLKDCLEKSKLALSDIHSVEIVGGSSRIPAIKGLIEKIFQKTPST 307
+ EEL D+ E ++ ++ L+ + L+ SDI V +VGGS+RIPA++ L++ F K P+
Sbjct: 295 KFEELTADLVERTKEPVRQALKDAGLSASDIDEVILVGGSTRIPAVQELVKDFFGKEPNK 354
Query: 308 TLNQDEAVARGCALQCAMLSPAVR 331
++N DE VA G A+Q +L V+
Sbjct: 355 SVNPDEVVAIGAAIQGGVLKGDVK 378
Score = 36.1 bits (84), Expect = 0.071
Identities = 33/129 (25%), Positives = 58/129 (44%), Gaps = 20/129 (15%)
Query: 496 AKKKVVSKTLDLTISATTHGLSPEQLNAHTELEGKMIAD-------DKLEKERIDARNCL 548
AK K K +TI+A++ GLS E++ +M+ + DK KE I+ARN
Sbjct: 479 AKDKGTGKEQSITITASS-GLSEEEIE-------RMVKEAEANAEEDKKRKEEIEARNNA 530
Query: 549 EEYVYDLRNKLGSEEEFALYIAADDASKLSTQLDETENWLYEEGADVNKSVYISKLDE-L 607
+ Y L +E + A++ K+ + E + L E + K+ +L + L
Sbjct: 531 DSLAYQAEKTL---KEAGDKLPAEEKEKIEKAVAELKEALKGEDVEEIKAK-TEELQQAL 586
Query: 608 KAIGEKIRQ 616
+ + E + Q
Sbjct: 587 QKLAEAMYQ 595
>gnl|CDD|234715 PRK00290, dnaK, molecular chaperone DnaK; Provisional.
Length = 627
Score = 181 bits (461), Expect = 2e-48
Identities = 119/389 (30%), Positives = 195/389 (50%), Gaps = 83/389 (21%)
Query: 6 VIGIDFG--NESCFIAAARAGGIETIANDYSLRATPSCVAFSDRNRIL-GVAAKNQTVTN 62
+IGID G N SC +A G + I N R TPS VAF+ L G AK Q VTN
Sbjct: 4 IIGIDLGTTN-SC-VAVMEGGEPKVIENAEGARTTPSVVAFTKDGERLVGQPAKRQAVTN 61
Query: 63 MKNTIHGFKRLIGREFKDPHVQDELKFLPYNVSENPDGSIGIKVKYLNEDRVFTPEQITA 122
+NTI KRL+GR +D VQ ++K +PY + + +G +++ + +TP++I+A
Sbjct: 62 PENTIFSIKRLMGR--RDEEVQKDIKLVPYKIVKADNGDAWVEID----GKKYTPQEISA 115
Query: 123 MLLTKLRETSEIALQCNISDCVLSVPSFYTNAERKALLDAAK--------II-------- 166
M+L KL++ +E L +++ V++VP+++ +A+R+A DA K II
Sbjct: 116 MILQKLKKDAEDYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAAL 175
Query: 167 -------------------------------------ASAANPYLGGRNIDYKLAKHFSQ 189
++ + +LGG + D ++ + +
Sbjct: 176 AYGLDKKGDEKILVYDLGGGTFDVSILEIGDGVFEVLSTNGDTHLGGDDFDQRIIDYLAD 235
Query: 190 EFKQKYNIEPESNPRAFLRLLTEVEKLKKQMS-ANSTK--LPFGIECFMNDI--DVKG-- 242
EFK++ I+ + A RL EK K ++S A T+ LPF I D G
Sbjct: 236 EFKKENGIDLRKDKMALQRLKEAAEKAKIELSSAQQTEINLPF--------ITADASGPK 287
Query: 243 ----EMCRSEMEELCKDVFENVEKTLKDCLEKSKLALSDIHSVEIVGGSSRIPAIKGLIE 298
++ R++ EEL +D+ E + K L+ + L++SDI V +VGGS+R+PA++ L++
Sbjct: 288 HLEIKLTRAKFEELTEDLVERTIEPCKQALKDAGLSVSDIDEVILVGGSTRMPAVQELVK 347
Query: 299 KIFQKTPSTTLNQDEAVARGCALQCAMLS 327
+ F K P+ +N DE VA G A+Q +L+
Sbjct: 348 EFFGKEPNKGVNPDEVVAIGAAIQGGVLA 376
Score = 38.9 bits (92), Expect = 0.010
Identities = 39/133 (29%), Positives = 62/133 (46%), Gaps = 28/133 (21%)
Query: 496 AKKKVVSKTLDLTISATTHGLSPEQLNAHTELEGKMIAD-------DKLEKERIDARNCL 548
AK K K +TI+A++ GLS E E+E +M+ D DK KE ++ARN
Sbjct: 481 AKDKGTGKEQSITITASS-GLSDE------EIE-RMVKDAEANAEEDKKRKELVEARNQA 532
Query: 549 EEYVYDLRNKLGSEEEFALYIAADDASKLSTQLDETENWLYEEGADVNKSVYI-SKLDEL 607
+ +Y L +E + AD+ K+ + E + L +G D I +K +EL
Sbjct: 533 DSLIYQTEKTL---KELGDKVPADEKEKIEAAIKELKEAL--KGEDKEA---IKAKTEEL 584
Query: 608 ----KAIGEKIRQ 616
+ +GE + Q
Sbjct: 585 TQASQKLGEAMYQ 597
>gnl|CDD|214360 CHL00094, dnaK, heat shock protein 70.
Length = 621
Score = 176 bits (449), Expect = 5e-47
Identities = 116/384 (30%), Positives = 193/384 (50%), Gaps = 63/384 (16%)
Query: 6 VIGIDFGNESCFIAAARAGGIETIANDYSLRATPSCVAFSDR-NRILGVAAKNQTVTNMK 64
V+GID G + +A G I N R TPS VA++ + + ++G AK Q V N +
Sbjct: 4 VVGIDLGTTNSVVAVMEGGKPTVIPNAEGFRTTPSIVAYTKKGDLLVGQIAKRQAVINPE 63
Query: 65 NTIHGFKRLIGREFKDPHVQDELKFLPYNVSENPDGSIGIKVKYLNEDRVFTPEQITAML 124
NT + KR IGR+F + + +E K + Y V + +G+I I+ LN+D F+PE+I+A +
Sbjct: 64 NTFYSVKRFIGRKFSE--ISEEAKQVSYKVKTDSNGNIKIECPALNKD--FSPEEISAQV 119
Query: 125 LTKLRETSEIALQCNISDCVLSVPSFYTNAERKALLDAAKI------------------- 165
L KL E + L ++ V++VP+++ +++R+A DA KI
Sbjct: 120 LRKLVEDASKYLGETVTQAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAASLAY 179
Query: 166 ----------------------------------IASAANPYLGGRNIDYKLAKHFSQEF 191
++++ + +LGG + D K+ +EF
Sbjct: 180 GLDKKNNETILVFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDKKIVNWLIKEF 239
Query: 192 KQKYNIEPESNPRAFLRLLTEVEKLKKQMSANSTK----LPFGIECFMNDIDVKGEMCRS 247
K+K I+ + +A RL EK K ++S N T+ LPF ++ + R+
Sbjct: 240 KKKEGIDLSKDRQALQRLTEAAEKAKIELS-NLTQTEINLPFITATQTGPKHIEKTLTRA 298
Query: 248 EMEELCKDVFENVEKTLKDCLEKSKLALSDIHSVEIVGGSSRIPAIKGLIEKIFQKTPST 307
+ EELC D+ +++ L+ +KL SDI V +VGGS+RIPAI+ L++K+ K P+
Sbjct: 299 KFEELCSDLINRCRIPVENALKDAKLDKSDIDEVVLVGGSTRIPAIQELVKKLLGKKPNQ 358
Query: 308 TLNQDEAVARGCALQCAMLSPAVR 331
++N DE VA G A+Q +L+ V+
Sbjct: 359 SVNPDEVVAIGAAVQAGVLAGEVK 382
Score = 32.4 bits (74), Expect = 1.2
Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 6/120 (5%)
Query: 496 AKKKVVSKTLDLTIS-ATTHGLSPEQLNAHTELEGKMIADDKLEKERIDARNCLEEYVYD 554
AK K K +TI A+T L +++ + K A+DK ++E+ID +N E Y
Sbjct: 483 AKDKGTGKEQSITIQGAST--LPKDEVERMVKEAEKNAAEDKEKREKIDLKNQAESLCYQ 540
Query: 555 LRNKLGSEEEFALYIAADDASKLSTQLDETENWLYEEGADVNKSVYISKLDELKAIGEKI 614
+L +E I+ + K+ + + L + + KS+ L IG+++
Sbjct: 541 AEKQL---KELKDKISEEKKEKIENLIKKLRQALQNDNYESIKSLLEELQKALMEIGKEV 597
>gnl|CDD|212682 cd11732, HSP105-110_like_NBD, Nucleotide-binding domain of 105/110
kDa heat shock proteins including HSPA4, HYOU1, and
similar proteins. This subfamily include the human
proteins, HSPA4 (also known as 70-kDa heat shock protein
4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4
gene maps to 5q31.1), HSPA4L (also known as 70-kDa heat
shock protein 4-like, APG-1, HSPH3, and OSP94; the human
HSPA4L gene maps to 4q28), and HSPH1 (also known as heat
shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B;
NY-CO-25; the human HSPH1 gene maps to 13q12.3), HYOU1
(also known as human hypoxia up-regulated 1, GRP170;
HSP12A; ORP150; GRP-170; ORP-150; the human HYOU1 gene
maps to11q23.1-q23.3), Saccharomyces cerevisiae Sse1p,
Sse2p, and Lhs1p, and a sea urchin sperm receptor. It
belongs to the 105/110 kDa heat shock protein
(HSP105/110) subfamily of the HSP70-like family, and
includes proteins believed to function generally as
co-chaperones of HSP70 chaperones, acting as nucleotide
exchange factors (NEFs), to remove ADP from their HSP70
chaperone partners during the ATP hydrolysis cycle.
HSP70 chaperones assist in protein folding and assembly,
and can direct incompetent "client" proteins towards
degradation. Like HSP70 chaperones, HSP105/110s have an
N-terminal nucleotide-binding domain (NBD) and a
C-terminal substrate-binding domain (SBD). For HSP70
chaperones, the nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is also regulated by J-domain proteins.
Length = 377
Score = 169 bits (430), Expect = 2e-46
Identities = 120/382 (31%), Positives = 183/382 (47%), Gaps = 69/382 (18%)
Query: 7 IGIDFGNESCFIAAARAGGIETIANDYSLRATPSCVAFSDRNRILGVAAKNQ-------T 59
G+D GN + +A AR GI+ + N+ S R+TPS V F +NR LG KN+ T
Sbjct: 1 FGLDLGNNNSVLAVARNRGIDIVVNEVSNRSTPSVVGFGPKNRYLGETGKNKQTSNIKNT 60
Query: 60 VTNMKNTI--------------HGFKRLIGREFKDPHVQDELKFLPYNVSENPDGSIGI- 104
V N+K I H +L+ E D E++F + +
Sbjct: 61 VANLKRIIGLDYHHPDFEQESKHFTSKLV--ELDDKKTGAEVRFAGEKHVFSATQLAAMF 118
Query: 105 --KVKYLNEDRVFTPEQITAMLLT-----------KLRETSEIA------LQCNISDCVL 145
KVK + T IT + + + + + IA + +++ +
Sbjct: 119 IDKVKDTVKQ--DTKANITDVCIAVPPWYTEEQRYNIADAARIAGLNPVRIVNDVTAAGV 176
Query: 146 S-------VPSFYTNAERKALLDAA----------------KIIASAANPYLGGRNIDYK 182
S +P A +D K++ +A + + GGR+ D
Sbjct: 177 SYGIFKTDLPEGEEKPRIVAFVDIGHSSYTCSIVAFKKGQLKVLGTACDKHFGGRDFDLA 236
Query: 183 LAKHFSQEFKQKYNIEPESNPRAFLRLLTEVEKLKKQMSANSTKLPFGIECFMNDIDVKG 242
+ +HF+ EFK KY I+ NP+A+ R+LT EKLKK +SAN T PF +E MND+DV
Sbjct: 237 ITEHFADEFKTKYKIDIRENPKAYNRILTAAEKLKKVLSAN-TNAPFSVESVMNDVDVSS 295
Query: 243 EMCRSEMEELCKDVFENVEKTLKDCLEKSKLALSDIHSVEIVGGSSRIPAIKGLIEKIFQ 302
++ R E+EEL K + E V + + L ++KL+ ++ VEI+GG++RIP +K I + F
Sbjct: 296 QLSREELEELVKPLLERVTEPVTKALAQAKLSAEEVDFVEIIGGTTRIPTLKQSISEAFG 355
Query: 303 KTPSTTLNQDEAVARGCALQCA 324
K STTLNQDEA+A+G A CA
Sbjct: 356 KPLSTTLNQDEAIAKGAAFICA 377
>gnl|CDD|184039 PRK13411, PRK13411, molecular chaperone DnaK; Provisional.
Length = 653
Score = 174 bits (444), Expect = 3e-46
Identities = 116/385 (30%), Positives = 186/385 (48%), Gaps = 65/385 (16%)
Query: 6 VIGIDFGNESCFIAAARAGGIETIANDYSLRATPSCVAFSDRN-RILGVAAKNQTVTNMK 64
VIGID G + +A G I N R TPS V F R++G AK Q VTN +
Sbjct: 4 VIGIDLGTTNSCVAVLEGGKPIVIPNSEGGRTTPSIVGFGKSGDRLVGQLAKRQAVTNAE 63
Query: 65 NTIHGFKRLIGREFKDPHVQDELKFLPYNVSENPDGSIGIKVKYLNEDRVFTPEQITAML 124
NT++ KR IGR + D ++E +PY + D ++ ++++ R +TP++I+AM+
Sbjct: 64 NTVYSIKRFIGRRWDD--TEEERSRVPYTCVKGRDDTVNVQIR----GRNYTPQEISAMI 117
Query: 125 LTKLRETSEIALQCNISDCVLSVPSFYTNAERKALLDAA--------KII---------- 166
L KL++ +E L ++ V++VP+++T+A+R+A DA +II
Sbjct: 118 LQKLKQDAEAYLGEPVTQAVITVPAYFTDAQRQATKDAGTIAGLEVLRIINEPTAAALAY 177
Query: 167 ------------------------------------ASAANPYLGGRNIDYKLAKHFSQE 190
A+A N +LGG + D + +
Sbjct: 178 GLDKQDQEQLILVFDLGGGTFDVSILQLGDGVFEVKATAGNNHLGGDDFDNCIVDWLVEN 237
Query: 191 FKQKYNIEPESNPRAFLRLLTEVEKLKKQMSA---NSTKLPFGIECFMNDIDVKGEMCRS 247
F+Q+ I+ + A RL EK K ++S+ S LPF ++ E+ R+
Sbjct: 238 FQQQEGIDLSQDKMALQRLREAAEKAKIELSSMLTTSINLPFITADETGPKHLEMELTRA 297
Query: 248 EMEELCKDVFENVEKTLKDCLEKSKLALSDIHSVEIVGGSSRIPAIKGLIEKIFQ-KTPS 306
+ EEL KD+ E + ++ L+ + L DI V +VGGS+RIPA++ I+K F K P
Sbjct: 298 KFEELTKDLVEATIEPMQQALKDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPD 357
Query: 307 TTLNQDEAVARGCALQCAMLSPAVR 331
++N DEAVA G A+Q +L V+
Sbjct: 358 RSVNPDEAVALGAAIQAGVLGGEVK 382
>gnl|CDD|240403 PTZ00400, PTZ00400, DnaK-type molecular chaperone; Provisional.
Length = 663
Score = 173 bits (441), Expect = 9e-46
Identities = 104/378 (27%), Positives = 182/378 (48%), Gaps = 61/378 (16%)
Query: 6 VIGIDFGNESCFIAAARAGGIETIANDYSLRATPSCVAFSDRN-RILGVAAKNQTVTNMK 64
++GID G + +A + I N +R TPS VAF++ R++G+ AK Q VTN +
Sbjct: 43 IVGIDLGTTNSCVAIMEGSQPKVIENSEGMRTTPSVVAFTEDGQRLVGIVAKRQAVTNPE 102
Query: 65 NTIHGFKRLIGREFKDPHVQDELKFLPYNVSENPDGSIGIKVKYLNEDRVFTPEQITAML 124
NT+ KRLIGR + + + E K LPY + +G I+ + + ++P QI A +
Sbjct: 103 NTVFATKRLIGRRYDEDATKKEQKILPYKIVRASNGDAWIEA----QGKKYSPSQIGAFV 158
Query: 125 LTKLRETSEIALQCNISDCVLSVPSFYTNAERKALLDAAK--------II---------- 166
L K++ET+E L + V++VP+++ +++R+A DA K II
Sbjct: 159 LEKMKETAESYLGRKVKQAVITVPAYFNDSQRQATKDAGKIAGLDVLRIINEPTAAALAF 218
Query: 167 -----------------------------------ASAANPYLGGRNIDYKLAKHFSQEF 191
A+ N LGG + D ++ + EF
Sbjct: 219 GMDKNDGKTIAVYDLGGGTFDISILEILGGVFEVKATNGNTSLGGEDFDQRILNYLIAEF 278
Query: 192 KQKYNIEPESNPRAFLRLLTEVEKLKKQMSANS---TKLPFGIECFMNDIDVKGEMCRSE 248
K++ I+ + + A RL E K ++S+ + LPF ++ ++ R++
Sbjct: 279 KKQQGIDLKKDKLALQRLREAAETAKIELSSKTQTEINLPFITADQSGPKHLQIKLSRAK 338
Query: 249 MEELCKDVFENVEKTLKDCLEKSKLALSDIHSVEIVGGSSRIPAIKGLIEKIFQKTPSTT 308
+EEL D+ + + + C++ + + +++ V +VGG +R+P + ++KIF K PS
Sbjct: 339 LEELTHDLLKKTIEPCEKCIKDAGVKKDELNDVILVGGMTRMPKVSETVKKIFGKEPSKG 398
Query: 309 LNQDEAVARGCALQCAML 326
+N DEAVA G A+Q +L
Sbjct: 399 VNPDEAVAMGAAIQAGVL 416
Score = 35.6 bits (82), Expect = 0.11
Identities = 30/122 (24%), Positives = 55/122 (45%), Gaps = 8/122 (6%)
Query: 496 AKKKVVSKTLDLTISATTHGLSPEQLNAHTELEGKMIADDKLEKERIDARNCLEEYVYDL 555
A K K ++TI ++ GLS E++ + + D+ +KE +DA+N E +Y +
Sbjct: 522 AVDKSTGKKQEITIQSSG-GLSDEEIEKMVKEAEEYKEQDEKKKELVDAKNEAETLIYSV 580
Query: 556 RNKLGSEEEFALYIAADDASKLSTQLDETENWLYEEGADVNKSVYISKLDELKAIGEKIR 615
+L + I+ D +L ++ + + L E D K K +L+ KI
Sbjct: 581 EKQL---SDLKDKISDADKDELKQKITKLRSTLSSEDVDSIK----DKTKQLQEASWKIS 633
Query: 616 QR 617
Q+
Sbjct: 634 QQ 635
>gnl|CDD|212674 cd10232, ScSsz1p_like_NBD, Nucleotide-binding domain of
Saccharmomyces cerevisiae Ssz1pp and similar proteins.
Saccharomyces cerevisiae Ssz1p (also known as
/Pdr13p/YHR064C) belongs to the heat shock protein 70
(HSP70) family of chaperones that assist in protein
folding and assembly and can direct incompetent "client"
proteins towards degradation. Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs). Some
family members are not chaperones but rather, function
as NEFs for their Hsp70 partners, while other family
members function as both chaperones and NEFs. Ssz1 does
not function as a chaperone; it facilitates the
interaction between the HSP70 Ssb protein and its
partner J-domain protein Zuo1 (also known as zuotin) on
the ribosome. Ssz1 is found in a stable heterodimer
(called RAC, ribosome associated complex) with Zuo1.
Zuo1 can only stimulate the ATPase activity of Ssb, when
it is in complex with Ssz1. Ssz1 binds ATP but neither
nucleotide-binding, hydrolysis, or its SBD, is needed
for its in vivo function.
Length = 386
Score = 167 bits (425), Expect = 1e-45
Identities = 103/385 (26%), Positives = 158/385 (41%), Gaps = 68/385 (17%)
Query: 5 SVIGIDFGNESCFIAAARAGGIETIANDYSLRATPSCVAFSDRNRILGVAAKNQTVTNMK 64
+VIGI+FGN IA G + IAN+ R PS +++ G AK Q + N K
Sbjct: 1 TVIGINFGNTYSSIACINQGKADVIANEDGERQIPSAISYHGEQEYHGNQAKAQLIRNAK 60
Query: 65 NTIHGFKRLIGREFKDPHVQDELKFLPYNVSENPDGSIG-IKVKYLNEDRVFTPEQITAM 123
NTI F+ L+G+ F + V P V+ G K + + ++ + T ++T
Sbjct: 61 NTITNFRDLLGKPFSEIDVSAAAAAAPVPVAVIDVGGTVQEKEEPVPKETILTVHEVTVR 120
Query: 124 LLTKLRETSEIALQCNISDCVLSVPSFYTNAERKALLDAAKII-----------ASAANP 172
L +L+E +E L ++ VLSVP+++++ + +AL+ AA+ A+A
Sbjct: 121 FLRRLKEAAEDFLGKKVAGAVLSVPTWFSDEQTEALVKAAEAAGLPVLQLIPEPAAALLA 180
Query: 173 Y-------------------LGGRNID-----------YKLAKH---------------- 186
Y GG D LA
Sbjct: 181 YDAGEPTEDEALDRNVVVADFGGTRTDVSVIAVRGGLYTILATAHDPGLGGDTLDDALVK 240
Query: 187 -FSQEFKQKYNIEPESNPRAFLRLLTEVEKLKKQMSANSTKLPFGIECFMNDIDVKGEMC 245
F++EF +K +P +N RA +L E E KK +S ST +E ID +
Sbjct: 241 HFAKEFTKKTKTDPRTNARALAKLRAESEITKKTLS-ASTSATCSVESLAEGIDFHSSIN 299
Query: 246 RSEMEELCKDVFENVEKTLKDCLEKSKLALSDIHSVEIVGGSSRIPAIKGLIEKIF---- 301
R E L VF + + K+ L DI V +VGG++ P + + +F
Sbjct: 300 RLRFELLASAVFRQFAAFVTSAVAKAGLDALDIDEVLLVGGTAFTPKLASNLSYLFPETT 359
Query: 302 ----QKTPSTTLNQDEAVARGCALQ 322
T S L+ E VARGCA+Q
Sbjct: 360 TITAPITVSKALDPSELVARGCAIQ 384
>gnl|CDD|184038 PRK13410, PRK13410, molecular chaperone DnaK; Provisional.
Length = 668
Score = 169 bits (430), Expect = 3e-44
Identities = 104/384 (27%), Positives = 181/384 (47%), Gaps = 63/384 (16%)
Query: 6 VIGIDFGNESCFIAAARAGGIETIANDYSLRATPSCVAFS-DRNRILGVAAKNQTVTNMK 64
++GID G + +A G IAN +R TPS V F+ D ++G A+ Q V N +
Sbjct: 4 IVGIDLGTTNSVVAVMEGGKPVVIANAEGMRTTPSVVGFTKDGELLVGQLARRQLVLNPQ 63
Query: 65 NTIHGFKRLIGREFKDPHVQDELKFLPYNVSENPDGSIGIKVKYLNEDRVFTPEQITAML 124
NT + KR IGR + + + E K +PY + N G++ IK L + F PE+++AM+
Sbjct: 64 NTFYNLKRFIGRRYDE--LDPESKRVPYTIRRNEQGNVRIKCPRLERE--FAPEELSAMI 119
Query: 125 LTKLRETSEIALQCNISDCVLSVPSFYTNAERKALLDAAKIIA------------SAANP 172
L KL + + L ++ V++VP+++ +++R+A DA + IA +AA
Sbjct: 120 LRKLADDASRYLGEPVTGAVITVPAYFNDSQRQATRDAGR-IAGLEVERILNEPTAAALA 178
Query: 173 Y------------------------------------------LGGRNIDYKLAKHFSQE 190
Y LGG + D ++ +++
Sbjct: 179 YGLDRSSSQTVLVFDLGGGTFDVSLLEVGNGVFEVKATSGDTQLGGNDFDKRIVDWLAEQ 238
Query: 191 FKQKYNIEPESNPRAFLRLLTEVEKLKKQMSANST---KLPFGIECFMNDIDVKGEMCRS 247
F +K I+ + +A RL EK K ++S S LPF ++ + R
Sbjct: 239 FLEKEGIDLRRDRQALQRLTEAAEKAKIELSGVSVTDISLPFITATEDGPKHIETRLDRK 298
Query: 248 EMEELCKDVFENVEKTLKDCLEKSKLALSDIHSVEIVGGSSRIPAIKGLIEKIFQKTPST 307
+ E LC D+ + + + +K L+ + L+ DI V +VGGS+R+P ++ L+ + + P+
Sbjct: 299 QFESLCGDLLDRLLRPVKRALKDAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLIPREPNQ 358
Query: 308 TLNQDEAVARGCALQCAMLSPAVR 331
+N DE VA G A+Q +L+ ++
Sbjct: 359 NVNPDEVVAVGAAIQAGILAGELK 382
>gnl|CDD|212680 cd10238, HSPA14-like_NBD, Nucleotide-binding domain of human HSPA14
and similar proteins. Human HSPA14 (also known as
70-kDa heat shock protein 14, HSP70L1, HSP70-4; the gene
encoding HSPA14 maps to 10p13), is ribosome-associated
and belongs to the heat shock protein 70 (HSP70) family
of chaperones that assist in protein folding and
assembly, and can direct incompetent "client" proteins
towards degradation. Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs). HSPA14
interacts with the J-protein MPP11 to form the mammalian
ribosome-associated complex (mRAC). HSPA14 participates
in a pathway along with Nijmegen breakage syndrome 1
(NBS1, also known as p85 or nibrin), heat shock
transcription factor 4b (HSF4b), and HSPA4 (belonging to
a different subfamily), that induces tumor migration,
invasion, and transformation. HSPA14 is a potent T
helper cell (Th1) polarizing adjuvant that contributes
to antitumor immune responses.
Length = 375
Score = 158 bits (401), Expect = 2e-42
Identities = 102/377 (27%), Positives = 177/377 (46%), Gaps = 59/377 (15%)
Query: 5 SVIGIDFGNESCFIAAARAGGIETIANDYSLRATPSCVAFSDRNRILGVAAKNQTVTNMK 64
+ IG+ FGN S +A + G + +AND R TP+ VAF+D I+G+AAK + N
Sbjct: 1 AAIGVHFGNTSACLAVYKDGRADVVANDAGDRVTPAVVAFTDTEVIVGLAAKQGRIRNAA 60
Query: 65 NTIHGFKRLIGREFKDPHVQDELKFLPYNVSENPDGSIGIKVKYLNEDRVFTPEQITAML 124
NTI K+++GR + DP Q E + E DG ++ + + +P+++ ++
Sbjct: 61 NTIVKNKQILGRSYSDPFKQKEKTESSCKIIEK-DGEPKYEIFTEEKTKHVSPKEVAKLI 119
Query: 125 LTKLRETSEIALQCNISDCVLSVPSFYTNAERKALLDAAK--------II--ASAA---- 170
K++E ++ AL + D V++VP +++ ++ AL +AA+ II SAA
Sbjct: 120 FKKMKEIAQSALGSDSKDVVITVPVYFSEKQKLALREAAEEAGFNVLRIIHEPSAAALAY 179
Query: 171 -----NPY---------LGG----------------------------RNIDYKLAKHFS 188
+P LGG + L+++ +
Sbjct: 180 GIGQDSPTGKSYVLVYRLGGTSTDVTILRVNSGMYRVLATSTDDNLGGESFTETLSQYLA 239
Query: 189 QEFKQKYNIEPESNPRAFLRLLTEVEKLKKQMSANSTKLPFGIECFMNDIDVKGEMCRSE 248
EFK+K+ + N RA ++L E K+ +S + F +E ID + + R+
Sbjct: 240 NEFKRKWKQDVRGNARAMMKLNNAAEVAKQILSTLPSANCF-VESLYEGIDFQCSVSRAR 298
Query: 249 MEELCKDVFENVEKTLKDCLEKSKLALSDIHSVEIVGGSSRIPAIKGLIEKIFQKTP-ST 307
E LC +F + ++ LE++ L +DI+ V + GGSSRIP ++ LI+ +F
Sbjct: 299 FESLCSSLFPKCLEPIEKVLEQANLTKTDINKVVLCGGSSRIPKLQQLIKDLFPSVEVLN 358
Query: 308 TLNQDEAVARGCALQCA 324
+++ DE +A G A Q
Sbjct: 359 SISPDEVIAIGAAKQAG 375
>gnl|CDD|215618 PLN03184, PLN03184, chloroplast Hsp70; Provisional.
Length = 673
Score = 160 bits (407), Expect = 2e-41
Identities = 148/594 (24%), Positives = 262/594 (44%), Gaps = 122/594 (20%)
Query: 6 VIGIDFGNESCFIAAARAGGIETIANDYSLRATPSCVAFSDR-NRILGVAAKNQTVTNMK 64
V+GID G + +AA G + N R TPS VA++ +R++G AK Q V N +
Sbjct: 41 VVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPE 100
Query: 65 NTIHGFKRLIGREFKDPHVQDELKFLPYNVSENPDGSIGIKVKYLNEDRVFTPEQITAML 124
NT KR IGR+ + V +E K + Y V + +G++ + + + F E+I+A +
Sbjct: 101 NTFFSVKRFIGRKMSE--VDEESKQVSYRVVRDENGNVKLDCPAIGKQ--FAAEEISAQV 156
Query: 125 LTKLRETSEIALQCNISDCVLSVPSFYTNAERKALLDAAKI------------------- 165
L KL + + L ++ V++VP+++ +++R A DA +I
Sbjct: 157 LRKLVDDASKFLNDKVTKAVITVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAY 216
Query: 166 ----------------------------------IASAANPYLGGRNIDYKLAKHFSQEF 191
++++ + +LGG + D ++ + F
Sbjct: 217 GFEKKSNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNF 276
Query: 192 KQKYNIEPESNPRAFLRLLTEVEKLKKQMSA---NSTKLPFGIECFMNDIDVKGEMCRSE 248
K+ I+ + +A RL EK K ++S+ S LPF + + R++
Sbjct: 277 KKDEGIDLLKDKQALQRLTEAAEKAKIELSSLTQTSISLPFITATADGPKHIDTTLTRAK 336
Query: 249 MEELCKDVFENVEKTLKDCLEKSKLALSDIHSVEIVGGSSRIPAIKGLIEKIFQKTPSTT 308
EELC D+ + + +++ L +KL+ DI V +VGGS+RIPA++ L++K+ K P+ T
Sbjct: 337 FEELCSDLLDRCKTPVENALRDAKLSFKDIDEVILVGGSTRIPAVQELVKKLTGKDPNVT 396
Query: 309 LNQDEAVARGCALQCAMLSPAVRVRDFSVTDLQVYPV---------VMEWDPSPNEPKDS 359
+N DE VA G A+Q +L+ V + L V P+ VM
Sbjct: 397 VNPDEVVALGAAVQAGVLAGEVS----DIVLLDVTPLSLGLETLGGVM------------ 440
Query: 360 KNFITVFPEMHAAPFSKKMTFY-----QNKPFAIQLYYEGNVPYPSKFIGKYQINDVKPG 414
+ P P SK F Q L E +K +G ++++ + P
Sbjct: 441 ---TKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPA 497
Query: 415 PDNASQKVTVKVRVNMDGVIGVIA---------------ASMVEKVENSGDTESM--DVE 457
P Q + VK ++ +G++ V A AS + K + E M + E
Sbjct: 498 PRGVPQ-IEVKFDIDANGILSVSATDKGTGKKQDITITGASTLPK----DEVERMVQEAE 552
Query: 458 NTEEENGQKQEAGSENTENKAE----KTQEGQSEDAEKKAAEAKKKVVSKTLDL 507
+E+ +K++A +T+N+A+ +T++ E +K A+ K+KV +K +L
Sbjct: 553 KFAKEDKEKRDA--VDTKNQADSVVYQTEKQLKELGDKVPADVKEKVEAKLKEL 604
>gnl|CDD|212678 cd10236, HscA_like_NBD, Nucleotide-binding domain of HscA and
similar proteins. Escherichia coli HscA (heat shock
cognate protein A, also called Hsc66), belongs to the
heat shock protein 70 (HSP70) family of chaperones that
assist in protein folding and assembly and can direct
incompetent "client" proteins towards degradation.
Typically, HSP70s have a nucleotide-binding domain (NBD)
and a substrate-binding domain (SBD). The nucleotide
sits in a deep cleft formed between the two lobes of the
NBD. The two subdomains of each lobe change conformation
between ATP-bound, ADP-bound, and nucleotide-free
states. ATP binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
HSP70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). HscA's partner J-domain protein is HscB;
it does not appear to require a NEF, and has been shown
to be induced by cold-shock. The HscA-HscB
chaperone/co-chaperone pair is involved in [Fe-S]
cluster assembly.
Length = 355
Score = 154 bits (391), Expect = 3e-41
Identities = 90/376 (23%), Positives = 154/376 (40%), Gaps = 83/376 (22%)
Query: 6 VIGIDFGNESCFIAAARAGGIETIANDYSLRATPSCVAFSDRNRILGVAAKNQTVTNMKN 65
IGID G + +A+ +G ++ + ++ PS V + D +G A +++ KN
Sbjct: 2 AIGIDLGTTNSLVASVLSGKVKILPDENGRVLLPSVVHYGDGGISVGHDALKLAISDPKN 61
Query: 66 TIHGFKRLIGREFKDPHVQDELKFLPYNVSENPDGSIGIKVKYLNEDRVFTPEQITAMLL 125
TI KRL+G+ +D + + G I + TP +++A +L
Sbjct: 62 TISSVKRLMGKSIEDIK---KSFPYLPILEGKNGGIILFHTQ----QGTVTPVEVSAEIL 114
Query: 126 TKLRETSEIALQCNISDCVLSVPSFYTNAERKALLDAAKI-------------------- 165
L+E +E +L I V++VP+++ +A+R+A DAA++
Sbjct: 115 KALKERAEKSLGGEIKGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAALAYG 174
Query: 166 ---------------------------------IASAANPYLGGRNIDYKLAKHFSQEFK 192
+A+ + LGG + D LA+
Sbjct: 175 LDKKKEGIYAVYDLGGGTFDVSILKLHKGVFEVLATGGDSALGGDDFDQLLAEL----LL 230
Query: 193 QKYNIEPESNPRAFLRLLTEVEKLKKQMSANSTKLPFGIECFMNDIDVKGEMC---RSEM 249
+KY ++ + LL K K+ +S ++ + C R E
Sbjct: 231 KKYGLKSLISDEDQAELLLIARKAKEALSGA----------EEVEVRGQDFKCTITREEF 280
Query: 250 EELCKDVFENVEKTL---KDCLEKSKLALSDIHSVEIVGGSSRIPAIKGLIEKIFQKTPS 306
E+L + V+KTL K L + L++ DI V +VGGS+RIP ++ + K F + P
Sbjct: 281 EKLIDPL---VKKTLNICKQALRDAGLSVKDIKGVILVGGSTRIPLVQEAVSKFFGQKPL 337
Query: 307 TTLNQDEAVARGCALQ 322
+N DE VA G ALQ
Sbjct: 338 CDINPDEVVAIGAALQ 353
>gnl|CDD|140213 PTZ00186, PTZ00186, heat shock 70 kDa precursor protein;
Provisional.
Length = 657
Score = 150 bits (379), Expect = 7e-38
Identities = 134/560 (23%), Positives = 239/560 (42%), Gaps = 82/560 (14%)
Query: 6 VIGIDFGNESCFIAAARAGGIETIANDYSLRATPSCVAFSDRNRILGVAAKNQTVTNMKN 65
VIG+D G +A + N R TPS VAF +++G+AAK Q +TN ++
Sbjct: 29 VIGVDLGTTYSCVATMDGDKARVLENSEGFRTTPSVVAFKGSEKLVGLAAKRQAITNPQS 88
Query: 66 TIHGFKRLIGREFKDPHVQDELKFLPYNVSENPDGSIGIKVKYLNEDRVFTPEQITAMLL 125
T + KRLIGR F+D H+Q ++K +PY + +G ++ + ++P QI A +L
Sbjct: 89 TFYAVKRLIGRRFEDEHIQKDIKNVPYKIVRAGNGDAWVQD---GNGKQYSPSQIGAFVL 145
Query: 126 TKLRETSEIALQCNISDCVLSVPSFYTNAERKALLDAA---------------------- 163
K++ET+E L +S+ V++ P+++ +A+R+A DA
Sbjct: 146 EKMKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDAGTIAGLNVIRVVNEPTAAALAYG 205
Query: 164 -------------------------------KIIASAANPYLGGRNIDYKLAKHFSQEFK 192
++ A+ + +LGG + D L+ + +EF+
Sbjct: 206 MDKTKDSLIAVYDLGGGTFDISVLEIAGGVFEVKATNGDTHLGGEDFDLALSDYILEEFR 265
Query: 193 QKYNIEPESNPRAFLRLLTEVEKLKKQMSA---NSTKLPFGIECFMNDIDVKGEMCRSEM 249
+ I+ A R+ EK K ++S+ LPF ++ + RS+
Sbjct: 266 KTSGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLPFITANADGAQHIQMHISRSKF 325
Query: 250 EELCKDVFENVEKTLKDCLEKSKLALSDIHSVEIVGGSSRIPAIKGLIEKIFQKTPSTTL 309
E + + + E K C++ + + L +I+ V +VGG +R+P + ++K FQK P +
Sbjct: 326 EGITQRLIERSIAPCKQCMKDAGVELKEINDVVLVGGMTRMPKVVEEVKKFFQKDPFRGV 385
Query: 310 NQDEAVARGCALQCAMLSPAVRVRDFSVTDLQVYPVVMEWDPSPNEPKDSKNFITVFPEM 369
N DEAVA G A +L V+ + L V P+ + + F + P+
Sbjct: 386 NPDEAVALGAATLGGVLRGDVK----GLVLLDVTPLSLGIETL------GGVFTRMIPKN 435
Query: 370 HAAPFSKKMTFY----QNKPFAIQLYY-EGNVPYPSKFIGKYQINDVKPGPDNASQKVTV 424
P K TF I+++ E + ++ +G++ + + P P Q + V
Sbjct: 436 TTIPTKKSQTFSTAADNQTQVGIKVFQGEREMAADNQMMGQFDLVGIPPAPRGVPQ-IEV 494
Query: 425 KVRVNMDGVIGVIAASMVE-KVEN-----SGDTESMDVENTEEENGQKQEAGSENTE-NK 477
++ +G+ V A K +N +G +E ++ Q EA E +
Sbjct: 495 TFDIDANGICHVTAKDKATGKTQNITITANGGLSKEQIEQMIRDSEQHAEADRVKRELVE 554
Query: 478 AEKTQEGQSEDAEKKAAEAK 497
E Q AE++ E K
Sbjct: 555 VRNNAETQLTTAERQLGEWK 574
>gnl|CDD|233673 TIGR01991, HscA, Fe-S protein assembly chaperone HscA. The Heat
Shock Cognate proteins HscA and HscB act together as
chaperones. HscA resembles DnaK but belongs in a
separate clade. The apparent function is to aid assembly
of iron-sulfur cluster proteins. Homologs from Buchnera
and Wolbachia are clearly in the same clade but are
highly derived and score lower than some examples of
DnaK [Protein fate, Protein folding and stabilization].
Length = 599
Score = 147 bits (373), Expect = 4e-37
Identities = 93/381 (24%), Positives = 168/381 (44%), Gaps = 78/381 (20%)
Query: 6 VIGIDFGNESCFIAAARAGGIETIANDYSLRATPSCVAFSDRNRIL-GVAAKNQTVTNMK 64
+GID G + +A+ R+G E + + PS V + + G A + K
Sbjct: 1 AVGIDLGTTNSLVASVRSGVPEVLPDAEGRVLLPSVVRYLKDGGVEVGKEALAAAAEDPK 60
Query: 65 NTIHGFKRLIGREFKDPHVQDELKFLPYNVSENPDGSIGIKVKYLNEDRVFTPEQITAML 124
NTI KRL+GR +D L PY + P + ++ TP +++A +
Sbjct: 61 NTISSVKRLMGRSIEDIKTFSIL---PYRFVDGPGEMVRLRTV----QGTVTPVEVSAEI 113
Query: 125 LTKLRETSEIALQCNISDCVLSVPSFYTNAERKALLDAAK-------------------- 164
L KL++ +E +L ++ V++VP+++ +A+R+A DAA+
Sbjct: 114 LKKLKQRAEESLGGDLVGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAVAY 173
Query: 165 ---------------------------------IIASAANPYLGGRNIDYKLAKHFSQEF 191
++A+ + LGG + D+ LAK
Sbjct: 174 GLDKASEGIYAVYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHALAKWI---- 229
Query: 192 KQKYNIEPESNPRAFLR-LLTEVEKLKKQMSAN-STKLPFGIECFMNDIDVKGEMCRSEM 249
++ I + NP R LL K+ ++ S ++ F ++ D KG++ R E
Sbjct: 230 LKQLGISADLNP-EDQRLLLQAARAAKEALTDAESVEVDFTLDGK----DFKGKLTRDEF 284
Query: 250 EELCKDVFENVEKTLKDC---LEKSKLALSDIHSVEIVGGSSRIPAIKGLIEKIFQKTPS 306
E L + + V+KTL C L + L++ +I V +VGGS+R+P ++ + ++F + P
Sbjct: 285 EALIQPL---VQKTLSICRRALRDAGLSVEEIKGVVLVGGSTRMPLVRRAVAELFGQEPL 341
Query: 307 TTLNQDEAVARGCALQCAMLS 327
T ++ D+ VA G A+Q +L+
Sbjct: 342 TDIDPDQVVALGAAIQADLLA 362
>gnl|CDD|212672 cd10230, HYOU1-like_NBD, Nucleotide-binding domain of human HYOU1
and similar proteins. This subgroup includes human
HYOU1 (also known as human hypoxia up-regulated 1,
GRP170; HSP12A; ORP150; GRP-170; ORP-150; the human
HYOU1 gene maps to11q23.1-q23.3) and Saccharomyces
cerevisiae Lhs1p (also known as Cer1p, SsI1). Mammalian
HYOU1 functions as a nucleotide exchange factor (NEF)
for HSPA5 (alos known as BiP, Grp78 or HspA5) and may
also function as a HSPA5-independent chaperone. S.
cerevisiae Lhs1p, does not have a detectable endogenous
ATPase activity like canonical HSP70s, but functions as
a NEF for Kar2p; it's interaction with Kar2p is
stimulated by nucleotide-binding. In addition, Lhs1p has
a nucleotide-independent holdase activity that prevents
heat-induced aggregation of proteins in vitro. This
subgroup belongs to the 105/110 kDa heat shock protein
(HSP105/110) subfamily of the HSP70-like family.
HSP105/110s are believed to function generally as
co-chaperones of HSP70 chaperones, acting as NEFs, to
remove ADP from their HSP70 chaperone partners during
the ATP hydrolysis cycle. HSP70 chaperones assist in
protein folding and assembly, and can direct incompetent
"client" proteins towards degradation. Like HSP70
chaperones, HSP105/110s have an N-terminal
nucleotide-binding domain (NBD) and a C-terminal
substrate-binding domain (SBD). For HSP70 chaperones,
the nucleotide sits in a deep cleft formed between the
two lobes of the NBD. The two subdomains of each lobe
change conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. Hsp70 chaperone activity is also
regulated by J-domain proteins.
Length = 388
Score = 140 bits (354), Expect = 6e-36
Identities = 63/163 (38%), Positives = 95/163 (58%), Gaps = 4/163 (2%)
Query: 165 IIASAANPYLGGRNIDYKLAKHFSQEFKQKYNIEP--ESNPRAFLRLLTEVEKLKKQMSA 222
++ + LGGR D +LA H ++EF++K+ + +NPRA +LL E + K+ +SA
Sbjct: 227 VLGVGWDRTLGGREFDLRLADHLAKEFEEKHKAKVDVRTNPRAMAKLLKEANRAKEVLSA 286
Query: 223 NSTKLPFGIECFMNDIDVKGEMCRSEMEELCKDVFENVEKTLKDCLEKSKLALSDIHSVE 282
NS + P IE +DID K ++ R+E EELC D+FE +K LE + L L DI SVE
Sbjct: 287 NS-EAPVSIESLYDDIDFKTKITRAEFEELCADLFERAVAPIKKALESAGLTLKDIDSVE 345
Query: 283 IVGGSSRIPAIKGLIEKIFQKTP-STTLNQDEAVARGCALQCA 324
++GG++R+P ++ + + K LN DEA A G A A
Sbjct: 346 LIGGATRVPKVQEELSEAVGKKKLGKHLNADEAAAMGAAYYAA 388
Score = 117 bits (296), Expect = 2e-28
Identities = 49/165 (29%), Positives = 82/165 (49%), Gaps = 11/165 (6%)
Query: 7 IGIDFGNESCFIAAA---RAGGIETIANDYSLRATPSCVAFSDRNRILGVAAKNQTVTNM 63
+GID G+E +I A E + N+ S R TPS VAF R+ G A +
Sbjct: 1 LGIDLGSE--WIKVALVKPGVPFEIVLNEESKRKTPSAVAFKGGERLFGSDASSLAARFP 58
Query: 64 KNTIHGFKRLIGREFKDPHVQDELKFLP--YNVSENPDGSIGIKVKYLNEDRVFTPEQIT 121
+ K L+G+ DP V P Y V + G++ K+ + ++ E++
Sbjct: 59 QQVYLHLKDLLGKPADDPSVSLYQSRHPLPYLVVDESRGTVAFKIS---DGEEYSVEELV 115
Query: 122 AMLLTKLRETSEIAL-QCNISDCVLSVPSFYTNAERKALLDAAKI 165
AM+L ++ +E + + D V++VP ++T A+R+ALLDAA++
Sbjct: 116 AMILNYAKKLAEEHAKEAPVKDVVITVPPYFTQAQRQALLDAAEL 160
>gnl|CDD|212679 cd10237, HSPA13-like_NBD, Nucleotide-binding domain of human HSPA13
and similar proteins. Human HSPA13 (also called 70-kDa
heat shock protein 13, STCH, "stress 70 protein
chaperone, microsome-associated, 60kD", "stress 70
protein chaperone, microsome-associated, 60kDa"; the
gene encoding HSPA13 maps to 21q11.1) belongs to the
heat shock protein 70 (HSP70) family of chaperones that
assist in protein folding and assembly and can direct
incompetent "client" proteins towards degradation.
Typically, HSP70s have a nucleotide-binding domain (NBD)
and a substrate-binding domain (SBD). The nucleotide
sits in a deep cleft formed between the two lobes of the
NBD. The two subdomains of each lobe change conformation
between ATP-bound, ADP-bound, and nucleotide-free
states. ATP binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
HSP70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). STCH contains an NBD but lacks an SBD.
STCH may function to regulate cell proliferation and
survival, and modulate the TRAIL-mediated cell death
pathway. The HSPA13 gene is a candidate stomach cancer
susceptibility gene; a mutation in the NBD coding region
of HSPA13 has been identified in stomach cancer cells.
The NBD of HSPA13 interacts with the ubiquitin-like
proteins Chap1 and Chap2, implicating HSPA13 in
regulating cell cycle and cell death events. HSPA13 is
induced by the Ca2+ ionophore A23187.
Length = 417
Score = 135 bits (342), Expect = 3e-34
Identities = 94/377 (24%), Positives = 159/377 (42%), Gaps = 61/377 (16%)
Query: 6 VIGIDFGNESCFIAAARA--GGIETIANDYSLRATPSCVAFSDRNRILGVAAKNQTVTNM 63
+IGID G + +A G + I ++ ++ PS VAF+ ++G A Q N
Sbjct: 22 IIGIDLGTTYSSVGVYQAGTGETDIIPDENGRKSIPSVVAFTPGTVLVGYKAVEQAEHNP 81
Query: 64 KNTIHGFKRLIGREFKDPHVQDELKFLPYNVSENPDGSIGIKVKYLNEDRVFTPEQITAM 123
+NTI+ KR IG+ F ++ E + V N NE + TPE+I +
Sbjct: 82 QNTIYDAKRFIGKIFTKEELEFESDRYRFKVKINSRNGAFFFSVLTNETKTVTPEEIGSR 141
Query: 124 LLTKLRETSEIALQCNISDCVLSVPS--------FYTNAERKALLDAAKII--------- 166
L+ KLR+ +E L + V+SVP+ A A L+ ++I
Sbjct: 142 LILKLRKMAEKYLGTPVGKAVISVPAEFDEKQRNATVKAANLAGLEVLRVINEPTAAALA 201
Query: 167 -------------------------------------ASAANPYLGGRNIDYKLAKHFSQ 189
A A N LGG++ + +L ++ Q
Sbjct: 202 YGLHKKQDVFNVLVVDLGGGTLDVSLLNKQGGMFLTRAMAGNNRLGGQDFNQRLLQYLYQ 261
Query: 190 EFKQKYNIEPESNPRAFLRLLTEVEKLKKQMS-ANSTKLPFGIECFMNDIDV---KGEMC 245
+ +KY P N RL VE K ++ ST + + + + E+
Sbjct: 262 KIYEKYGKVP-DNKEDIQRLRQAVEAAKINLTLHPSTTISLNLTLLSEGESIVKFEYELT 320
Query: 246 RSEMEELCKDVFENVEKTLKDCLEKSKLALSDIHSVEIVGGSSRIPAIKGLIEKIFQKTP 305
R E E L +D+F+ + ++ L + L ++ + +VGGS+RIP I+ +I + F K P
Sbjct: 321 RDEFETLNEDLFQKILLPIEAVLAEGHLDKEEVDEIVLVGGSTRIPRIRQVIGRFFGKDP 380
Query: 306 STTLNQDEAVARGCALQ 322
+T+++ + AV G A+Q
Sbjct: 381 NTSVDPELAVVTGVAIQ 397
>gnl|CDD|235360 PRK05183, hscA, chaperone protein HscA; Provisional.
Length = 616
Score = 130 bits (330), Expect = 1e-31
Identities = 86/376 (22%), Positives = 158/376 (42%), Gaps = 76/376 (20%)
Query: 7 IGIDFGNESCFIAAARAGGIETIANDYSLRATPSCVAFSDRNRILGVAAKNQTVTNMKNT 66
+GID G + +A R+G E + ++ PS V + + +G A+ + KNT
Sbjct: 22 VGIDLGTTNSLVATVRSGQAEVLPDEQGRVLLPSVVRYLEDGIEVGYEARANAAQDPKNT 81
Query: 67 IHGFKRLIGREFKDPHVQDELKFLPYNVSENPDGSIGIKVKYLNEDRVFTPEQITAMLLT 126
I KR +GR D +Q LPY + +G I+ + +P +++A +L
Sbjct: 82 ISSVKRFMGRSLAD--IQQRYPHLPYQFVASENGMPLIRTA----QGLKSPVEVSAEILK 135
Query: 127 KLRETSEIALQCNISDCVLSVPSFYTNAERKA--------------LLD---AAKI---- 165
LR+ +E L + V++VP+++ +A+R+A LL+ AA I
Sbjct: 136 ALRQRAEETLGGELDGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAIAYGL 195
Query: 166 --------------------------------IASAANPYLGGRNIDYKLAKHFSQEFKQ 193
+A+ + LGG + D+ LA +
Sbjct: 196 DSGQEGVIAVYDLGGGTFDISILRLSKGVFEVLATGGDSALGGDDFDHLLADWI----LE 251
Query: 194 KYNIEPESNPRAFLRLLTEVEKLKKQMSANSTKLPFGIECFMNDIDVKGEMCRSEMEELC 253
+ + P +P LL K+ +S + + +GE+ R + L
Sbjct: 252 QAGLSPRLDPEDQRLLLDAARAAKEALSDADSVE---VSVA----LWQGEITREQFNALI 304
Query: 254 KDVFENVEKTLKDC---LEKSKLALSDIHSVEIVGGSSRIPAIKGLIEKIFQKTPSTTLN 310
+ V++TL C L + + ++ V +VGGS+R+P ++ + + F +TP T+++
Sbjct: 305 APL---VKRTLLACRRALRDAGVEADEVKEVVMVGGSTRVPLVREAVGEFFGRTPLTSID 361
Query: 311 QDEAVARGCALQCAML 326
D+ VA G A+Q +L
Sbjct: 362 PDKVVAIGAAIQADIL 377
>gnl|CDD|212677 cd10235, HscC_like_NBD, Nucleotide-binding domain of Escherichia
coli HscC and similar proteins. This subfamily
includes Escherichia coli HscC (also called heat shock
cognate protein C, Hsc62, or YbeW) and the the putative
DnaK-like protein Escherichia coli ECs0689. It belongs
to the heat shock protein 70 (Hsp70) family of
chaperones that assist in protein folding and assembly
and can direct incompetent "client" proteins towards
degradation. Typically, Hsp70s have a nucleotide-binding
domain (NBD) and a substrate-binding domain (SBD). The
nucleotide sits in a deep cleft formed between the two
lobes of the NBD. The two subdomains of each lobe change
conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. Hsp70 chaperone activity is
regulated by various co-chaperones: J-domain proteins
and nucleotide exchange factors (NEFs). Two genes in the
vicinity of the HscC gene code for potential
cochaperones: J-domain containing proteins, DjlB/YbeS
and DjlC/YbeV. HscC and its co-chaperone partners may
play a role in the SOS DNA damage response. HscC does
not appear to require a NEF.
Length = 339
Score = 98.0 bits (245), Expect = 4e-22
Identities = 47/162 (29%), Positives = 87/162 (53%), Gaps = 10/162 (6%)
Query: 165 IIASAANPYLGGRNIDYKLAKHFSQEFKQKYNIEPESNPRAFL-RLLTEVEKLKKQMS-A 222
+ ASA + YLGG + LA + F +K+ ++ E + L RLL E+ K+ +S
Sbjct: 186 VRASAGDNYLGGEDFTRALA----EAFLKKHGLDFEKLDPSELARLLRAAERAKRALSDQ 241
Query: 223 NSTKLPFGIECFMNDIDVKGEMCRSEMEELCKDVFENVEKTLKDCLEKSKLALSDIHSVE 282
+ + + +++ + R E EE+C+ + E + + ++ L ++L SDI +
Sbjct: 242 EEAE----MSVRIEGEELEYTLTREEFEEICQPLLERLRQPIERALRDARLKPSDIDEII 297
Query: 283 IVGGSSRIPAIKGLIEKIFQKTPSTTLNQDEAVARGCALQCA 324
+VGG++R+P ++ L+ ++F + P LN DE VA G A+Q
Sbjct: 298 LVGGATRMPVVRKLVSRLFGRFPLVHLNPDEVVALGAAIQAG 339
Score = 74.8 bits (185), Expect = 2e-14
Identities = 42/158 (26%), Positives = 70/158 (44%), Gaps = 29/158 (18%)
Query: 7 IGIDFGNESCFIAAARAGGIETIANDYSLRATPSCVAFSDRNRIL-GVAAKNQTVTNMKN 65
IGID G + +A + G I N TPS V+ + IL G AA+ + +T+
Sbjct: 1 IGIDLGTTNSLVAVWQDGKARLIPNALGEYLTPSVVSVDEDGEILVGKAARERLITHPDL 60
Query: 66 TIHGFKRLIGREFKDPHVQDELKFLPYNVSENPDGSIGIKVKYLNEDRVFTPEQITAMLL 125
T FKR +G + KY R F E++++++L
Sbjct: 61 TAASFKRFMGTD----------------------------KKYRLGKREFRAEELSSLVL 92
Query: 126 TKLRETSEIALQCNISDCVLSVPSFYTNAERKALLDAA 163
L+E +E L +++ V+SVP+++ + +RKA A
Sbjct: 93 RSLKEDAEAYLGEPVTEAVISVPAYFNDEQRKATKRAG 130
>gnl|CDD|234955 PRK01433, hscA, chaperone protein HscA; Provisional.
Length = 595
Score = 82.2 bits (203), Expect = 3e-16
Identities = 81/375 (21%), Positives = 145/375 (38%), Gaps = 100/375 (26%)
Query: 6 VIGIDFGNESCFIAAARAGGIETIANDYSLRATPSCVAFSDRNRILGVAAKNQTVTNMKN 65
+GIDFG + IA A ++ I + P+ + F+ N +G
Sbjct: 21 AVGIDFGTTNSLIAIATNRKVKVIKSIDDKELIPTTIDFTSNNFTIG----------NNK 70
Query: 66 TIHGFKRLIGREFKD----PHVQDELK-FLPYNVSENPDGSIGIKVKYLNEDRVFTPEQI 120
+ KRL G+ K+ P + +K +L N SE +K+ + N + +I
Sbjct: 71 GLRSIKRLFGKTLKEILNTPALFSLVKDYLDVNSSE-------LKLNFAN--KQLRIPEI 121
Query: 121 TAMLLTKLRETSEIALQCNISDCVLSVPSFYTNAERKALLDAAKI--------------- 165
A + L+ +E L+ NI+ V++VP+ + +A R ++ AAKI
Sbjct: 122 AAEIFIYLKNQAEEQLKTNITKAVITVPAHFNDAARGEVMLAAKIAGFEVLRLIAEPTAA 181
Query: 166 --------------------------------------IASAANPYLGGRNIDYKLAKHF 187
IA+ + LGG +ID + ++
Sbjct: 182 AYAYGLNKNQKGCYLVYDLGGGTFDVSILNIQEGIFQVIATNGDNMLGGNDIDVVITQYL 241
Query: 188 SQEFKQKYNIEPESNPRAFLRLLTEVEKLKKQMSANSTKLPFGIECFMNDIDVKGEMCRS 247
+F +I+ ++ K K+ + F ND + +
Sbjct: 242 CNKFDLPNSIDT-----------LQLAKKAKETLTYK-------DSFNND---NISINKQ 280
Query: 248 EMEELCKDVFENVEKTLKDCLEKSKLALSDIHSVEIVGGSSRIPAIKGLIEKIFQKTPST 307
+E+L + E ++CLE++ +I V +VGG++RIP IK + K F+ +
Sbjct: 281 TLEQLILPLVERTINIAQECLEQAG--NPNIDGVILVGGATRIPLIKDELYKAFKVDILS 338
Query: 308 TLNQDEAVARGCALQ 322
++ D+AV G ALQ
Sbjct: 339 DIDPDKAVVWGAALQ 353
>gnl|CDD|212673 cd10231, YegD_like, Escherichia coli YegD, a putative chaperone
protein, and related proteins. This bacterial subfamily
includes the uncharacterized Escherichia coli YegD. It
belongs to the heat shock protein 70 (HSP70) family of
chaperones that assist in protein folding and assembly
and can direct incompetent "client" proteins towards
degradation. Typically, HSP70s have a nucleotide-binding
domain (NBD) and a substrate-binding domain (SBD). The
nucleotide sits in a deep cleft formed between the two
lobes of the NBD. The two subdomains of each lobe change
conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. YegD lacks the SBD. HSP70
chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). Some family members are not chaperones
but instead, function as NEFs for their Hsp70 partners,
other family members function as both chaperones and
NEFs.
Length = 415
Score = 57.9 bits (141), Expect = 9e-09
Identities = 27/115 (23%), Positives = 50/115 (43%), Gaps = 5/115 (4%)
Query: 208 RLLTEVEKLKKQMS-ANSTKLPFGIECFMNDIDVKGEMCRSEMEELCKDVFENVEKTLKD 266
RL VE K +S + T++ ++ ++ + R+E E E +E + +
Sbjct: 302 RLARAVEAAKIALSSQDETRIDLDFV----EVGLEAPVTRAEFEGAIAPDLERIEAAVDE 357
Query: 267 CLEKSKLALSDIHSVEIVGGSSRIPAIKGLIEKIFQKTPSTTLNQDEAVARGCAL 321
L ++ ++ I V + GGSS +PA++ F + +VA G AL
Sbjct: 358 ALAQAGVSPDAIDRVFLTGGSSLVPAVRQAFAARFPAARIVEGDAFGSVASGLAL 412
Score = 34.4 bits (80), Expect = 0.24
Identities = 40/188 (21%), Positives = 65/188 (34%), Gaps = 45/188 (23%)
Query: 7 IGIDFGNESCFIAAARAGGIETIANDYSLRATPSCVAFSDRNRILGVAAKNQTVTNMKNT 66
+GIDFG + +A AR G + + PS + F L
Sbjct: 1 LGIDFGTSNSAVAVARDGQPRLVPLEGGSTTLPSALFFPHEESALEREV----------- 49
Query: 67 IHGFKRLIGREFKDPHVQDE--------LK-FLPYNVSENPDGSIGIKVKYLNEDRVFTP 117
L GR +++ LK FL GS + + R T
Sbjct: 50 ------LFGRAAIAAYLEGPGEGRLMRSLKSFL---------GSSLFRETRIF-GRRLTF 93
Query: 118 EQITAMLLTKLRETSEIALQCNISDCVLSVPSFY----TNAERKALLDAAKIIASAANPY 173
E + A L +L++ +E AL I V+ P + A+ +A A AA
Sbjct: 94 EDLVARFLAELKQRAEAALGAEIDRVVIGRPVHFVGDDEAADAQAEARLRA-AARAA--- 149
Query: 174 LGGRNIDY 181
G +++++
Sbjct: 150 -GFKDVEF 156
>gnl|CDD|198375 cd07809, FGGY_D-XK_1, D-xylulose kinases, subgroup 1; members of
the FGGY family of carbohydrate kinases. This subgroup
is composed of D-xylulose kinases (XK, also known as
xylulokinase; EC 2.7.1.17) from bacteria and eukaryota.
They share high sequence similarity with Escherichia
coli xylulokinase (EcXK), which catalyzes the
rate-limiting step in the ATP-dependent phosphorylation
of D-xylulose to produce D-xylulose 5-phosphate (X5P)
and ADP. Some uncharacterized sequences are also
included in this subfamily. EcXK exists as a dimer. Each
monomer consists of two large domains separated by an
open cleft that forms an active site. This model
includes both the N-terminal domain, which adopts a
ribonuclease H-like fold, and the structurally related
C-terminal domain. The presence of Mg2+ or Mn2+ might be
required for catalytic activity. Members of this
subgroup belong to the FGGY family of carbohydrate
kinases.
Length = 487
Score = 41.9 bits (99), Expect = 0.001
Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
Query: 250 EELCKDVFENVEKTLKDCLEKSKLALSDIHSVEI--VGGSSRIPAIKGLIEKIFQKTPST 307
L + E L+ L+ L + S EI +GG ++ PA + +I I
Sbjct: 367 ANLARAAVEGATFGLRYGLDL--LRALGLKSTEIRLIGGGAKSPAWRQIIADIMN-AEVV 423
Query: 308 TLNQDEAVARGCALQCA 324
+ +EA A G A+Q A
Sbjct: 424 VPDTEEAAALGAAIQAA 440
>gnl|CDD|233354 TIGR01312, XylB, D-xylulose kinase. This model describes
D-xylulose kinases, a subfamily of the FGGY family of
carbohydrate kinases. The member from Klebsiella
pneumoniae, designated DalK (see PMID:9324246), was
annotated erroneously in GenBank as D-arabinitol kinase
but is authentic D-xylulose kinase. D-xylulose kinase
(XylB) generally is found with xylose isomerase (XylA)
and acts in xylose utilization [Energy metabolism,
Sugars].
Length = 481
Score = 40.4 bits (95), Expect = 0.003
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query: 245 CRSEMEELCKDVFENVEKTLKDCLEK-SKLALSDIHSVEIVGGSSRIPAIKGLIEKIFQK 303
+ +L + V E V L+D L+ + I S+ ++GG ++ PA + ++ IF
Sbjct: 357 HNTTRADLTRAVLEGVTFALRDSLDILREAGGIPIQSIRLIGGGAKSPAWRQMLADIFG- 415
Query: 304 TPSTTLNQDEAVARGCALQCAM 325
TP +E A G A+ A
Sbjct: 416 TPVDVPEGEEGPALGAAILAAW 437
>gnl|CDD|198352 cd07774, FGGY_1, uncharacterized subgroup; belongs to the FGGY
family of carbohydrate kinases. This subfamily is
composed of uncharacterized carbohydrate kinases. They
are sequence homologous to bacterial glycerol kinase and
have been classified as members of the FGGY family of
carbohydrate kinases. The monomers of FGGY proteins
contain two large domains, which are separated by a deep
cleft that forms the active site. This model includes
both the N-terminal domain, which adopts a ribonuclease
H-like fold, and the structurally related C-terminal
domain.
Length = 430
Score = 38.1 bits (89), Expect = 0.015
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 250 EELCKDVFENVEKTLKDCLEKSKLALSDIHSVEIVGGSSRIPAIKGLIEKIFQKTPSTTL 309
E++ + V E + + LE + + + ++GG SR L + K P L
Sbjct: 358 EDITRSVLEGLTFEARSTLECLEKLGFEGSRIVVIGGGSRNKLWLQLKASVLGK-PIEVL 416
Query: 310 NQDEAVARGCAL 321
++ E VA G AL
Sbjct: 417 DEAELVALGAAL 428
>gnl|CDD|223996 COG1070, XylB, Sugar (pentulose and hexulose) kinases [Carbohydrate
transport and metabolism].
Length = 502
Score = 35.8 bits (83), Expect = 0.096
Identities = 22/77 (28%), Positives = 29/77 (37%), Gaps = 2/77 (2%)
Query: 250 EELCKDVFENVEKTLKDCLEK-SKLALSDIHSVEIVGGSSRIPAIKGLIEKIFQKTPSTT 308
L + V E V L D LE +L V +VGG +R P ++ P
Sbjct: 373 AHLARAVLEGVAFALADGLEALEELGGKPPSRVRVVGGGARSPLWLQILADALGL-PVVV 431
Query: 309 LNQDEAVARGCALQCAM 325
+EA A G A A
Sbjct: 432 PEVEEAGALGGAALAAA 448
>gnl|CDD|184921 PRK14957, PRK14957, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 546
Score = 35.8 bits (82), Expect = 0.097
Identities = 9/54 (16%), Positives = 19/54 (35%)
Query: 687 RTKDAPVPTSEIKNEMQNLNNAVNPVFSKPKPQPKVEKKENGVQQNGETEEHMD 740
+T + + KN++ L N K + V + + E+ +D
Sbjct: 368 QTSKSNISPIVSKNDINLLKNTFKSEQPKQTVKAVVAQNNDSTASENTQEQSLD 421
>gnl|CDD|198374 cd07808, FGGY_D-XK_EcXK-like, Escherichia coli xylulokinase-like
D-xylulose kinases; a subgroup of the FGGY family of
carbohydrate kinases. This subgroup is predominantly
composed of bacterial D-xylulose kinases (XK, also known
as xylulokinase; EC 2.7.1.17), which catalyze the
rate-limiting step in the ATP-dependent phosphorylation
of D-xylulose to produce D-xylulose 5-phosphate (X5P)
and ADP. D-xylulose has been used as a source of carbon
and energy by a variety of microorganisms. Some
uncharacterized sequences are also included in this
subgroup. The prototypical member of this CD is
Escherichia coli xylulokinase (EcXK), which exists as a
dimer. Each monomer consists of two large domains
separated by an open cleft that forms an active site.
This model includes both the N-terminal domain, which
adopts a ribonuclease H-like fold, and the structurally
related C-terminal domain. The presence of Mg2+ or Mn2+
is required for catalytic activity. Members of this
subgroup belong to the FGGY family of carbohydrate
kinases.
Length = 482
Score = 33.6 bits (78), Expect = 0.36
Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 13/86 (15%)
Query: 241 KGEMCRSEMEELCKDVFENVEKTLKDCLEKSKLALSDIHSVEIVGGSSRIPAIKGLIEKI 300
+ + R+ V E V +L+D LE + I + +GG +R P + +
Sbjct: 363 RAHLTRA--------VLEGVAFSLRDSLEILRELGVPIDRIIAIGGGARSPLWLQIQADV 414
Query: 301 FQKTPSTTLNQDEAVARGCALQCAML 326
P TL +E G AL A+L
Sbjct: 415 LGL-PVDTLKGEE----GPALGAAIL 435
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. This domain is
found at the N terminus of SMC proteins. The SMC
(structural maintenance of chromosomes) superfamily
proteins have ATP-binding domains at the N- and
C-termini, and two extended coiled-coil domains
separated by a hinge in the middle. The eukaryotic SMC
proteins form two kind of heterodimers: the SMC1/SMC3
and the SMC2/SMC4 types. These heterodimers constitute
an essential part of higher order complexes, which are
involved in chromatin and DNA dynamics. This family also
includes the RecF and RecN proteins that are involved in
DNA metabolism and recombination.
Length = 1162
Score = 33.8 bits (77), Expect = 0.40
Identities = 37/254 (14%), Positives = 79/254 (31%), Gaps = 14/254 (5%)
Query: 442 VEKVENSGDTESMDVENTEEENGQKQEAGSE----NTENKAEKTQEGQSEDAEKKAAEAK 497
E+ + D + E + Q+ E E + E+ +E + ++ E K +
Sbjct: 236 NEERIDLLQELLRDEQEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQEEELKLLAKE 295
Query: 498 KKVVSKTLDLTISATTHGLSPEQLNAHTELEGKMIADDKLEKERIDARNCLEEYVYDLRN 557
++ + L E+L + K+ + K EKE I+ + + R
Sbjct: 296 EEELKSELLKLERRKVDDE--EKLKESEKELKKLEKELKKEKEEIEELEKELKELEIKRE 353
Query: 558 KLGSEEEFALYIAADDASKLSTQLDE-TENWLYEEGADVNKSVYISKLDELKAIGEKIRQ 616
EEE + L + A K + +E + + + +
Sbjct: 354 AEEEEEEQLEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKNEEEKEAKLLLE 413
Query: 617 RKVDYEEKTKAFENIFCSIQIAQKKISMFKEGDERL--NHLDAAEIT-----VVEEKVAN 669
E+ K + I ++ K+G L+ + + +K +
Sbjct: 414 LSEQEEDLLKEEKKEELKIVEELEESLETKQGKLTEEKEELEKQALKLLKDKLELKKSED 473
Query: 670 ALKWAENAQSLMNE 683
LK + + L
Sbjct: 474 LLKETKLVKLLEQL 487
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc
gene is often associated with scpB (TIGR00281) and scpA
genes, where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle [Cellular processes, Cell
division, DNA metabolism, Chromosome-associated
proteins].
Length = 1179
Score = 33.1 bits (76), Expect = 0.66
Identities = 41/237 (17%), Positives = 79/237 (33%), Gaps = 21/237 (8%)
Query: 456 VENTEEENGQKQEAGSENTENKAEKTQEGQSEDAEKKAAEAKKKVVS----------KTL 505
VE EE Q + +E E + + + E AEA+ + + K L
Sbjct: 742 VEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKAL 801
Query: 506 DLTISATTHGLSPEQLNAHTELEGKMIADDKLEKERIDARNCLEEYVYDLRNKLGSEEEF 565
+ L+ A E + LE+ LE+ + E
Sbjct: 802 REALDELRAELTLLNEEAANLRERL----ESLERRIAATERRLEDLEEQIEELSEDIESL 857
Query: 566 ALYIAA--DDASKLSTQLDETENWL--YEEGADVNKSVYISKLDELKAIGEKIRQRKVDY 621
A I + +L ++L+ N EE + +S +EL+ + K + + +
Sbjct: 858 AAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRREL 917
Query: 622 EEKTKAFENIFCSIQIAQKKISMFKEGDERLNHLDAAEITVVEEKVANALKWAENAQ 678
EE + + ++ + +I + ERL+ + + E E A+
Sbjct: 918 EELREKLAQLELRLEGLEVRIDNLQ---ERLSEEYSLTLEEAEALENKIEDDEEEAR 971
>gnl|CDD|238916 cd01941, YeiC_kinase_like, YeiC-like sugar kinase. Found in
eukaryotes and bacteria, YeiC-like kinase is part of the
ribokinase/pfkB sugar kinase superfamily. Its
oligomerization state is unknown at this time.
Length = 288
Score = 32.3 bits (74), Expect = 0.82
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 4 MSVIGIDFGNESCFIAAARAGGIETIANDYSLRATPSCVAFSDRNRILGVA 54
+S +G D ES + + G+ + R+T S A D++ L VA
Sbjct: 55 LSAVGDDSEGES-ILEESEKAGLNVRGIVFEGRSTASYTAILDKDGDLVVA 104
>gnl|CDD|178945 PRK00247, PRK00247, putative inner membrane protein translocase
component YidC; Validated.
Length = 429
Score = 32.5 bits (74), Expect = 0.88
Identities = 19/91 (20%), Positives = 27/91 (29%), Gaps = 21/91 (23%)
Query: 456 VENTEEENGQKQEAGSENTENKAEKTQEGQSED------------------AEKKAAEAK 497
EN E + + E K + +E A + A +AK
Sbjct: 327 AENAEIKKTRTAEKNEAKARKKEIAQKRRAAEREINREARQERAAAMARARARRAAVKAK 386
Query: 498 KKVV---SKTLDLTISATTHGLSPEQLNAHT 525
KK + S D SP Q+ A T
Sbjct: 387 KKGLIDASPNEDTPSENEESKGSPPQVEATT 417
>gnl|CDD|240352 PTZ00302, PTZ00302, N-acetylglucosamine-phosphate mutase;
Provisional.
Length = 585
Score = 32.7 bits (75), Expect = 0.92
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
Query: 238 IDVKGEMCRSEMEELCKDV-----FENVEKTLKDCLEKSKLALSD 277
ID G M E++C D E++ L DCL + + LS+
Sbjct: 96 IDPDGGMLEESWEKICTDFANARTGEDLVSVLMDCLTEHGIKLSN 140
>gnl|CDD|220785 pfam10498, IFT57, Intra-flagellar transport protein 57. Eukaryotic
cilia and flagella are specialised organelles found at
the periphery of cells of diverse organisms.
Intra-flagellar transport (IFT) is required for the
assembly and maintenance of eukaryotic cilia and
flagella, and consists of the bidirectional movement of
large protein particles between the base and the distal
tip of the organelle. IFT particles contain multiple
copies of two distinct protein complexes, A and B, which
contain at least 6 and 11 protein subunits. IFT57 is
part of complex B but is not, however, required for the
core subunits to stay associated. This protein is known
as Huntington-interacting protein-1 in humans.
Length = 355
Score = 31.6 bits (72), Expect = 1.4
Identities = 37/206 (17%), Positives = 74/206 (35%), Gaps = 19/206 (9%)
Query: 425 KVRVNMDGVIGVIAASMVEKVENSGDTESMDVENTEEENGQKQEAGSENTENKAEKTQEG 484
+ V A ++E+VE + E +D ++E Q+ + + + Q
Sbjct: 128 NEEDEEENVDEDDAEIILEEVEEEVEIEEVD----DDEGTQETKY---KRGDTSLTPQAK 180
Query: 485 QSEDAEKKAAEAKKKV--VSKTLDLTISATTHGLSPEQLNAHTELEGKMIADDKLEKERI 542
++ AAE K +V V L +TI + + + LE + K
Sbjct: 181 DVLESLIDAAEWKLEVERVLPQLKVTIKT-------DAKDWRSHLEQMHQLKKAISKSLP 233
Query: 543 DARNCLEEYVYDLRNKLGSEEEFALYIAADDASKLST--QLDETENWLYEEGADVNKSVY 600
+ + L++ DL L ++ + + T + + E+ ++ V
Sbjct: 234 ETKQYLKKLSQDLSKALEKISSREKHLNNQLEQLVQEYREARRTLSQVQEKYNQASQGV- 292
Query: 601 ISKLDELKAIGEKIRQRKVDYEEKTK 626
EL I E++ Q K + EE+
Sbjct: 293 SELTRELNEISEELEQVKQEMEERGA 318
>gnl|CDD|218538 pfam05285, SDA1, SDA1. This family consists of several SDA1
protein homologues. SDA1 is a Saccharomyces cerevisiae
protein which is involved in the control of the actin
cytoskeleton. The protein is essential for cell
viability and is localised in the nucleus.
Length = 317
Score = 31.2 bits (71), Expect = 1.8
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 9/77 (11%)
Query: 445 VENSGDTESMDVENTEEENGQKQEAGSENTENKAEKTQEGQSEDAEKKAAEAKKKVVSKT 504
VE+ + ES D E+ EE++ ++A ++ E ++E + E AE++ AEA+K+ S+
Sbjct: 121 VESDKEIESSDSEDEEEKDEAAKKAKE---DSDEELSEEDEEEAAEEEEAEAEKEKASEL 177
Query: 505 LDLTISATTHGLSPEQL 521
ATT L+P
Sbjct: 178 ------ATTRILTPADF 188
>gnl|CDD|226920 COG4547, CobT, Cobalamin biosynthesis protein CobT
(nicotinate-mononucleotide:5, 6-dimethylbenzimidazole
phosphoribosyltransferase) [Coenzyme metabolism].
Length = 620
Score = 31.4 bits (71), Expect = 2.2
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 9/75 (12%)
Query: 441 MVEKVENSGDTESMDVENTE---------EENGQKQEAGSENTENKAEKTQEGQSEDAEK 491
M E+ + G E D E+ + E G+++ GS+ +E + +G+ E+ E
Sbjct: 218 MAEETGDDGIEEDADEEDGDDDQPDNNEDSEAGREESEGSDESEEDEAEATDGEGEEGEM 277
Query: 492 KAAEAKKKVVSKTLD 506
AAEA + S D
Sbjct: 278 DAAEASEDSESDESD 292
>gnl|CDD|198373 cd07805, FGGY_XK_like_2, uncharacterized xylulose kinase-like
proteins; a subgroup of the FGGY family of carbohydrate
kinases. This subgroup is composed of uncharacterized
proteins with similarity to bacterial D-Xylulose kinases
(XK, also known as xylulokinase; EC 2.7.1.17), which
catalyze the rate-limiting step in the ATP-dependent
phosphorylation of D-xylulose to produce D-xylulose
5-phosphate (X5P) and ADP. The presence of Mg2+ or Mn2+
is required for catalytic activity. D-XK exists as a
dimer with an active site that lies at the interface
between the N- and C-terminal domains. This model
includes both the N-terminal domain, which adopts a
ribonuclease H-like fold, and the structurally related
C-terminal domain. Members of this subgroup belong to
the FGGY family of carbohydrate kinases.
Length = 514
Score = 31.5 bits (72), Expect = 2.2
Identities = 27/164 (16%), Positives = 58/164 (35%), Gaps = 32/164 (19%)
Query: 175 GGRNIDYKLAKHFSQEFKQKYNIEPESNPRAFLRLLTEVEKLKKQMSANSTKLPF----- 229
G +++ L Q+ + E S + +++L S L F
Sbjct: 310 AGGALEW-LKDLLLQDEDGLADEEGRS-------VYERLDELAASAPPGSNGLIFLPWLH 361
Query: 230 GIECFMNDIDVKG------------EMCRSEMEELCKDVFENVEKTLKDCLEKSKLALSD 277
G + D + +G ++ R+ +E + ++ + L + +E+
Sbjct: 362 GERSPVEDPNARGGFFNLSLETTRADLLRAVLEGVALNL-----RWLLEAVER--FLGRR 414
Query: 278 IHSVEIVGGSSRIPAIKGLIEKIFQKTPSTTLNQDEAVARGCAL 321
+ + VGG +R +I + + + +EA ARG A
Sbjct: 415 LGELRFVGGGARSDLWCQIIADVLGRPIRRVEDPEEAGARGAAA 458
>gnl|CDD|237035 PRK12280, rplW, 50S ribosomal protein L23; Reviewed.
Length = 158
Score = 30.1 bits (68), Expect = 2.3
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 460 EEENGQKQEAGSENTENKAEKTQEGQSEDAEKKAAE-AKKKVVSKTLDLTISATT 513
EE +++E E E +A K ++ + E EKK AE KK +KT T T
Sbjct: 93 EESEKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKKAT 147
>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase.
Length = 1066
Score = 31.4 bits (71), Expect = 2.4
Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Query: 499 KVVSKTLDLTISATTHGLSPEQLNAHTELEGKMIADDKLEKER--IDARNCLEEYVYDLR 556
KV+ D + E L + + +G + A+ +LEK R +D +E +
Sbjct: 961 KVLLSENDAPPAGCAFENVNENLKVYLQAQGAVNAEAELEKLRNKMDEIQKQQEKLEKKM 1020
Query: 557 NKLGSEEEFALYIAADDASKLSTQLDETE 585
N G +E+ I +DA KL+ L E E
Sbjct: 1021 NASGYKEKVPANIQEEDARKLTKLLQELE 1049
>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen;
Provisional.
Length = 1136
Score = 31.3 bits (70), Expect = 2.6
Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 5/116 (4%)
Query: 388 IQLYYEGNVPYPSKFIGKYQINDVKPGPDNASQKVTVKVRVNMDGVIGVIAASMVEKVEN 447
++ Y E NV + + +Y +V+ +NA + V + N++ + E +E
Sbjct: 1019 VEEYDEENVEEVEENVEEYDEENVEEIEENAEENVEENIEENIEEYDEENVEEIEENIEE 1078
Query: 448 SGDTESMDVENTEEENGQKQEAGSENTENKAEKTQEGQSEDAEKKAAEAKKKVVSK 503
+ E EN EE + +E EN E AE+ E E+AE+ A E + +
Sbjct: 1079 --NIEENVEENVEENVEEIEENVEENVEENAEENAE---ENAEENAEEYDDENPEE 1129
>gnl|CDD|173934 cd08175, G1PDH, Glycerol-1-phosphate dehydrogenase (G1PDH)
catalyzes the reversible reduction of dihydroxyacetone
phosphate (DHAP) to glycerol-1-phosphate (G1P) in an
NADH-dependent manner. Glycerol-1-phosphate
dehydrogenase (G1PDH) plays a role in the synthesis of
phosphoglycerolipids in Gram-positive bacterial species.
It catalyzes the reversibly reduction of
dihydroxyacetone phosphate (DHAP) to
glycerol-1-phosphate (G1P) in a NADH-dependent manner.
Its activity requires a Ni++ ion. In Bacillus subtilis,
it has been described as AraM gene in L-arabinose (ara)
operon. AraM protein forms homodimer. This family is
bacteria specific.
Length = 348
Score = 30.6 bits (70), Expect = 2.7
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 15/57 (26%)
Query: 250 EELCKDVFENVEKTLKDCLEKSK-LALSDIHSVEIVG-------------GSSRIPA 292
E C+ V++ VE+ L+ CLE + LA D +++ + GSSR PA
Sbjct: 184 EYYCETVWDLVEEALEKCLESADGLAARDEEAIKQLMEALILSGLAMQLVGSSR-PA 239
>gnl|CDD|148051 pfam06213, CobT, Cobalamin biosynthesis protein CobT. This family
consists of several bacterial cobalamin biosynthesis
(CobT) proteins. CobT is involved in the transformation
of precorrin-3 into cobyrinic acid.
Length = 282
Score = 30.6 bits (69), Expect = 3.0
Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 10/95 (10%)
Query: 412 KPGPDNASQKVTVKVRVNMDGVIGVIAASMVEKVENSGDTESMDVE----------NTEE 461
K G D V + V+ + +SM E + ES D E + ++
Sbjct: 177 KAGKDLDRLAACVDDQQAFARVVRDMLSSMDMAEELGDEPESADSEDNEDEDDPKEDEDD 236
Query: 462 ENGQKQEAGSENTENKAEKTQEGQSEDAEKKAAEA 496
+ G+++E+GS ++ ++ + E E +AAEA
Sbjct: 237 DQGEEEESGSSDSLSEDSDASSEEMESGEMEAAEA 271
>gnl|CDD|222878 PHA02562, 46, endonuclease subunit; Provisional.
Length = 562
Score = 30.8 bits (70), Expect = 3.0
Identities = 23/115 (20%), Positives = 45/115 (39%), Gaps = 7/115 (6%)
Query: 634 SIQIAQKKISMFKEGDERLNHLDAAEITVVEEKVANALKWAENAQSLMNEFTDRTKDAPV 693
I Q++I + + E + I + K ++ A+ ++ + E TD + +
Sbjct: 189 KIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVM 248
Query: 694 PTSEIKNEMQNLNNAVNPVFSKPKPQPKVEK--KENGV-----QQNGETEEHMDD 741
+ + LN A + SK + KV K ++ GV QQ E + +
Sbjct: 249 DIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYEKGGVCPTCTQQISEGPDRITK 303
>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein.
Length = 529
Score = 30.5 bits (69), Expect = 3.7
Identities = 13/56 (23%), Positives = 28/56 (50%)
Query: 451 TESMDVENTEEENGQKQEAGSENTENKAEKTQEGQSEDAEKKAAEAKKKVVSKTLD 506
+ ++ E +EE +++E E E +K +E E+ +++ + KKV T +
Sbjct: 28 EKEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTE 83
>gnl|CDD|130712 TIGR01651, CobT, cobaltochelatase, CobT subunit. This model
describes Pseudomonas denitrificans CobT gene product,
which is a cobalt chelatase subunit that functions in
cobalamin biosynthesis. Cobalamin (vitamin B12) can be
synthesized via several pathways, including an aerobic
pathway (found in Pseudomonas denitrificans) and an
anaerobic pathway (found in P. shermanii and Salmonella
typhimurium). These pathways differ in the point of
cobalt insertion during corrin ring formation. There are
apparently a number of variations on these two pathways,
where the major differences seem to be concerned with
the process of ring contraction. Confusion regarding the
functions of enzymes found in the aerobic vs. anaerobic
pathways has arisen because nonhomologous genes in these
different pathways were given the same gene symbols.
Thus, cobT in the aerobic pathway (P. denitrificans) is
not a homolog of cobT in the anaerobic pathway (S.
typhimurium). It should be noted that E. coli
synthesizes cobalamin only when it is supplied with the
precursor cobinamide, which is a complex intermediate.
Additionally, all E. coli cobalamin synthesis genes
(cobU, cobS and cobT) were named after their Salmonella
typhimurium homologs which function in the anaerobic
cobalamin synthesis pathway. This model describes the
aerobic cobalamin pathway Pseudomonas denitrificans CobT
gene product, which is a cobalt chelatase subunit, with
a MW ~70 kDa. The aerobic pathway cobalt chelatase is a
heterotrimeric, ATP-dependent enzyme that catalyzes
cobalt insertion during cobalamin biosynthesis. The
other two subunits are the P. denitrificans CobS
(TIGR01650) and CobN (pfam02514 CobN/Magnesium
Chelatase) proteins. To avoid potential confusion with
the nonhomologous Salmonella typhimurium/E.coli cobT
gene product, the P. denitrificans gene symbol is not
used in the name of this model [Biosynthesis of
cofactors, prosthetic groups, and carriers, Heme,
porphyrin, and cobalamin].
Length = 600
Score = 30.7 bits (69), Expect = 3.9
Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 9/73 (12%)
Query: 433 VIGVIAASMVEKVENSGDTESMDVENTEE---------ENGQKQEAGSENTENKAEKTQE 483
V+ + SM E DTES D E+ ++ E G+ + G E + + + +
Sbjct: 189 VVREMLRSMELAEEMGDDTESEDEEDGDDDQPTENEQEEQGEGEGEGQEGSAPQESEATD 248
Query: 484 GQSEDAEKKAAEA 496
+SE E++ ++
Sbjct: 249 RESESGEEEMVQS 261
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 30.9 bits (69), Expect = 4.0
Identities = 17/63 (26%), Positives = 27/63 (42%)
Query: 437 IAASMVEKVENSGDTESMDVENTEEENGQKQEAGSENTENKAEKTQEGQSEDAEKKAAEA 496
I A ++K E + EE + +E ENK + +E + + +KK AE
Sbjct: 1620 IKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEE 1679
Query: 497 KKK 499
KK
Sbjct: 1680 AKK 1682
>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase;
Provisional.
Length = 418
Score = 30.4 bits (69), Expect = 4.0
Identities = 17/84 (20%), Positives = 24/84 (28%), Gaps = 2/84 (2%)
Query: 419 SQKVTVKVRVNMDGVIGVIAASMVEKVENSGDTESMD--VENTEEENGQKQEAGSENTEN 476
+ KV+V +R GVI I A + VE +D A +E T
Sbjct: 83 TDKVSVDIRAPASGVITKIFAEEGDTVEVGAPLSEIDTGGAPPAAAPAAAAAAKAEKTTP 142
Query: 477 KAEKTQEGQSEDAEKKAAEAKKKV 500
+ K E
Sbjct: 143 EKPKAAAPTPEPPAASKPTPPAAA 166
>gnl|CDD|237284 PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase;
Reviewed.
Length = 460
Score = 30.3 bits (68), Expect = 4.2
Identities = 9/52 (17%), Positives = 14/52 (26%), Gaps = 8/52 (15%)
Query: 719 QPKVEKKENG--------VQQNGETEEHMDDSSPKAETKAEPDTKEPEAAAT 762
+ +E+++ G Q P A D EPE
Sbjct: 368 EADIEREQPGDLAGQAPAAHQVDAEAASAAPEEPAALASEAHDETEPEVPEK 419
>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import
receptor (72 kDa mitochondrial outermembrane protein)
(mitochondrial import receptor for the ADP/ATP carrier)
(translocase of outermembrane tom70). [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 615
Score = 30.3 bits (68), Expect = 4.5
Identities = 10/40 (25%), Positives = 18/40 (45%)
Query: 465 QKQEAGSENTENKAEKTQEGQSEDAEKKAAEAKKKVVSKT 504
+Q+ S+ +K E+ + Q+E + E KK K
Sbjct: 59 GQQQRESKPKISKKERRKRKQAEKETEGKTEEKKSTAPKN 98
>gnl|CDD|215565 PLN03083, PLN03083, E3 UFM1-protein ligase 1 homolog; Provisional.
Length = 803
Score = 30.6 bits (69), Expect = 4.5
Identities = 21/104 (20%), Positives = 46/104 (44%), Gaps = 2/104 (1%)
Query: 447 NSGDTESMDVENTEEENGQKQEAGSENTENKAEKTQEGQSEDAEKKAAEAKKKVVSKTLD 506
+ G ES + ++ +K++ S +T+ ++ EDA KK + +KK K+
Sbjct: 403 SLGSNESSPAASNSDKGSKKKKGKSTSTKGGTAESIPDDEEDAPKKGKKNQKKGRDKS-S 461
Query: 507 LTISATTHGLSPEQLNAHTELEGKMIADDKLEKERIDARNCLEE 550
S + G E + + + + ++ + K+ ++ LEE
Sbjct: 462 KVPSDSKAGGKKESVKSQED-NNNIPPEEWVMKKILEWVPDLEE 504
>gnl|CDD|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional.
Length = 413
Score = 30.1 bits (68), Expect = 4.5
Identities = 14/76 (18%), Positives = 29/76 (38%)
Query: 453 SMDVENTEEENGQKQEAGSENTENKAEKTQEGQSEDAEKKAAEAKKKVVSKTLDLTISAT 512
S ++ +T E K S + K +K E + + +KK + +KK + +
Sbjct: 35 SKEILSTFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFK 94
Query: 513 THGLSPEQLNAHTELE 528
T S + + +
Sbjct: 95 TPKKSKKTKKKPPKPK 110
>gnl|CDD|234229 TIGR03490, Mycoplas_LppA, mycoides cluster lipoprotein, LppA/P72
family. Members of this protein family occur in
Mycoplasma mycoides, Mycoplasma hyopneumoniae, and
related Mycoplasmas in small paralogous families that
may also include truncated forms and/or pseudogenes.
Members are predicted lipoproteins with a conserved
signal peptidase II processing and lipid attachment
site. Note that the name for certain characterized
members, p72, reflects an anomalous apparent molecular
weight, given a theoretical MW of about 61 kDa.
Length = 541
Score = 30.2 bits (68), Expect = 4.8
Identities = 12/60 (20%), Positives = 18/60 (30%), Gaps = 2/60 (3%)
Query: 694 PTSEIKNEMQNLNNAVNPVFSKPKPQPKVEKKENGVQQNGETEEHMDDSSPKAETKAEPD 753
E N +N N P +K + + E E D K + K + D
Sbjct: 54 DNKEPSENNNNKSNNENKDEENPSSTNPEKKPDPSKNK--EEIEKPKDEPKKPDKKPQAD 111
>gnl|CDD|218704 pfam05701, DUF827, Plant protein of unknown function (DUF827).
This family consists of several plant proteins of
unknown function. Several sequences in this family are
described as being "myosin heavy chain-like".
Length = 484
Score = 29.6 bits (66), Expect = 6.7
Identities = 36/177 (20%), Positives = 68/177 (38%), Gaps = 8/177 (4%)
Query: 538 EKERIDARNCLEE---YVYDLRNKLGSEEEFALYIAADDASKLSTQLDETENWLYEEGAD 594
EKE++ LE V DL+ KL E+ A S+L+ E L + +
Sbjct: 56 EKEKLQVLKELESTKRTVEDLKLKLEKAEKEE--QQAKQDSELAKLRAEE---LEQGIQE 110
Query: 595 VNKSVYISKLDELKAIGEKIRQRKVDYEEKTKAFENIFCSIQIAQKKISMFKEGDERLNH 654
+ YI+ EL ++ E++R+ + +Y+ + + + A + ++ E L
Sbjct: 111 LEVERYITATAELDSVKEELRKIRQEYDALVEERDAALKRAEEAICASKVNEKKVEELTK 170
Query: 655 LDAAEITVVEEKVANALKWAENAQSLMNEFTDRTKDAPVPTSEIKNEMQNLNNAVNP 711
A +E A L+ E E + E + E++ L ++P
Sbjct: 171 EIIAMKESLERAHAAHLEAEEERIGAALEKDQDRETYEKELKEAEKELERLKQDLDP 227
>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha
subunit (TFIIF-alpha). Transcription initiation factor
IIF, alpha subunit (TFIIF-alpha) or RNA polymerase
II-associating protein 74 (RAP74) is the large subunit
of transcription factor IIF (TFIIF), which is essential
for accurate initiation and stimulates elongation by RNA
polymerase II.
Length = 528
Score = 29.5 bits (66), Expect = 6.8
Identities = 12/56 (21%), Positives = 25/56 (44%)
Query: 450 DTESMDVENTEEENGQKQEAGSENTENKAEKTQEGQSEDAEKKAAEAKKKVVSKTL 505
D+ + + E E+ E ++ + E ++E + E E++ +KK K L
Sbjct: 289 DSSASGNDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKKLKKL 344
>gnl|CDD|221121 pfam11489, DUF3210, Protein of unknown function (DUF3210). This is
a family of proteins conserved in yeasts. The function
is not known. The Schizosaccharomyces pombe member is
SPBC18E5.07 and the Saccharomyces cerevisiae member is
AIM21.
Length = 671
Score = 29.9 bits (67), Expect = 7.0
Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 1/74 (1%)
Query: 686 DRTKDAPVPTS-EIKNEMQNLNNAVNPVFSKPKPQPKVEKKENGVQQNGETEEHMDDSSP 744
+R + P+ S E+ E + AV+P F + K + + + ++N +
Sbjct: 307 EREAEEPILASDEVAKEPAGESPAVSPSFEREKSEKSRHESDPKSRENSKPASIYGSVPD 366
Query: 745 KAETKAEPDTKEPE 758
D +E E
Sbjct: 367 LIRHTPLEDVEEYE 380
>gnl|CDD|240338 PTZ00262, PTZ00262, subtilisin-like protease; Provisional.
Length = 639
Score = 29.5 bits (66), Expect = 7.2
Identities = 29/143 (20%), Positives = 55/143 (38%), Gaps = 17/143 (11%)
Query: 433 VIGVIAASMV--EKVENSGDTESMDVENTEEENGQKQEAGSENTENKAEKTQEGQSEDAE 490
V S + E VE ++ + D + +EE + Q + + Q+ E
Sbjct: 55 VERGAETSNLRGEGVEADVNSSNPDSASPKEELQKIQGQQESSPPQVSHLLQDDSHNMDE 114
Query: 491 KKAAEAKKKVVSKTLDLTISATTHGLSPEQLNAHTELEGKMIADDKL----EKERIDARN 546
K KKK K L L +S H SP + + ++ ++ + K R+
Sbjct: 115 MKTKLRKKK---KILRLIVS-ENHATSP------SFFQESLLEENVVSFLGSKGRLSNLK 164
Query: 547 CLEEYVYDLRNKLGSEEEFALYI 569
+ Y+ +L + + ++ E YI
Sbjct: 165 NIHSYIIELFSDI-TDRELKNYI 186
>gnl|CDD|239107 cd02429, PTH2_like, Peptidyl-tRNA hydrolase, type 2 (PTH2)_like .
Peptidyl-tRNA hydrolase activity releases tRNA from the
premature translation termination product peptidyl-tRNA.
Two structurally different enzymes have been reported
to encode such activity, Pth present in bacteria and
eukaryotes and Pth2 present in archaea and eukaryotes.
There is no functional information for this
eukaryote-specific subgroup.
Length = 116
Score = 27.8 bits (62), Expect = 8.3
Identities = 14/66 (21%), Positives = 24/66 (36%), Gaps = 13/66 (19%)
Query: 586 NWLYEEGADVNKSVYISKLD-------------ELKAIGEKIRQRKVDYEEKTKAFENIF 632
L+ D K Y+S LD LK + K+ + + ++ + ENI
Sbjct: 34 IHLFRSDPDTKKYAYLSNLDNMHKVVLEVPDEAALKNLSSKLTENSIKHKLWIEQPENIP 93
Query: 633 CSIQIA 638
I +
Sbjct: 94 TCIALK 99
>gnl|CDD|114629 pfam05917, DUF874, Helicobacter pylori protein of unknown function
(DUF874). This family consists of several hypothetical
proteins specific to Helicobacter pylori. The function
of this family is unknown.
Length = 417
Score = 29.5 bits (65), Expect = 8.4
Identities = 26/129 (20%), Positives = 55/129 (42%)
Query: 456 VENTEEENGQKQEAGSENTENKAEKTQEGQSEDAEKKAAEAKKKVVSKTLDLTISATTHG 515
+E +EE +QE E + ++E ++K + K+K + + A +
Sbjct: 149 IELEQEEQKTEQEKQKTEKEGIELANSQIKAEQEKQKTEQEKQKTEQEKQKTSNIANKNA 208
Query: 516 LSPEQLNAHTELEGKMIADDKLEKERIDARNCLEEYVYDLRNKLGSEEEFALYIAADDAS 575
+ EQ TE E + + ++ + + +NC E + KLG + A+ I A+ +
Sbjct: 209 IELEQEKQKTENEKQDLIKEQKDFIKEAEQNCQENHNQFFIKKLGIKAGIAIEIEAECKT 268
Query: 576 KLSTQLDET 584
+ ++T
Sbjct: 269 PKPAKTNQT 277
>gnl|CDD|227701 COG5414, COG5414, TATA-binding protein-associated factor
[Transcription].
Length = 392
Score = 29.3 bits (65), Expect = 8.5
Identities = 14/67 (20%), Positives = 29/67 (43%)
Query: 440 SMVEKVENSGDTESMDVENTEEENGQKQEAGSENTENKAEKTQEGQSEDAEKKAAEAKKK 499
E+VEN+ + + +E G+++E EN EN+ + +K E K++
Sbjct: 296 QQQEEVENAEAHKEEVQSDRPDEIGEEKEEDDENEENERHTELLADELNELEKGIEEKRR 355
Query: 500 VVSKTLD 506
+ +
Sbjct: 356 QMESATN 362
>gnl|CDD|236944 PRK11642, PRK11642, exoribonuclease R; Provisional.
Length = 813
Score = 29.3 bits (66), Expect = 8.6
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 8/90 (8%)
Query: 423 TVKVRV---NMDG-VIGVIAASMVEKVENSGDTESMDVE--NTEEENGQKQEAGSE-NTE 475
V+VRV NMD I S N G T + + ++ G++++ G + N E
Sbjct: 705 RVEVRVEAVNMDERKIDFSLISSERAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFE 764
Query: 476 -NKAEKTQEGQSEDAEKKAAEAKKKVVSKT 504
+ A + ++ A KK A KK +KT
Sbjct: 765 PDSAFRGEKKAKPKAAKKDARKAKKPSAKT 794
>gnl|CDD|225563 COG3018, COG3018, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 115
Score = 27.9 bits (62), Expect = 8.6
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 684 FTDRTKDAPVPTSEIKNEMQNLNNAVNPVFSKPK 717
TD KD P+P+S I+N + + + P
Sbjct: 50 GTDTVKDQPLPSSRIENNVNGVIRNAEITNAIPN 83
>gnl|CDD|212105 cd10793, GH57N_TLGT_like, N-terminal catalytic domain of
4-alpha-glucanotransferase; glycoside hydrolase family
57 (GH57). 4-alpha-glucanotransferase (TLGT, EC
2.4.1.25) plays a key role in the maltose metabolism. It
catalyzes the disproportionation of amylose and the
formation of large cyclic alpha-1,4-glucan
(cycloamylose) from linear amylose. TLGT functions as a
homodimer. Each monomer is composed of two domains, an
N-terminal catalytic domain with a (beta/alpha)7 barrel
fold and a C-terminal domain with a twisted
beta-sandwich fold. Some family members have been
designated as alpha-amylases, such as the heat-stable
eubacterial amylase from Dictyoglomus thermophilum
(DtAmyA) and the extremely thermostable archaeal amylase
from Pyrococcus furiosus(PfAmyA). However, both of these
proteins are 4-alpha-glucanotransferases. DtAmyA was
shown to have transglycosylating activity and PfAmyA
exhibits 4-alpha-glucanotransferase activity.
Length = 279
Score = 29.1 bits (66), Expect = 8.8
Identities = 24/84 (28%), Positives = 32/84 (38%), Gaps = 10/84 (11%)
Query: 515 GLSPEQLNAH--TELEGKMIA----DDKLEKERIDARNCLEEYVYDLRNKLGSEEEFALY 568
GL PE+L + TE EG + KL I + E D + EE +
Sbjct: 150 GLPPEELYGYYLTEDEGHKLKVFPISKKLRYL-IPFKP--PEETIDYLRSIAREEGGRVA 206
Query: 569 IAADDASKLSTQLDETENWLYEEG 592
+ DD K T W+YE G
Sbjct: 207 VIFDDGEKFGL-WPGTYEWVYERG 229
>gnl|CDD|223918 COG0849, ftsA, Cell division ATPase FtsA [Cell division and
chromosome partitioning].
Length = 418
Score = 29.1 bits (66), Expect = 9.4
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 8/59 (13%)
Query: 246 RSEMEELCKDVFENVEKTLKDCLEKSKLALSDIHSVEIVGGSSRIPAIKGLIEKIFQKT 304
+ +EE + E V+ L+ + L V + GG +++P I L E+IF +
Sbjct: 297 EARVEE----ILELVKAELRKSGLPNHL----PGGVVLTGGGAQLPGIVELAERIFGRP 347
>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional.
Length = 509
Score = 29.2 bits (66), Expect = 9.7
Identities = 26/182 (14%), Positives = 57/182 (31%), Gaps = 13/182 (7%)
Query: 438 AASMVEKVENSGDTESMDVENTEEENGQKQEAGSENTENKAEKTQEGQSEDAEKKAAEAK 497
E+++ S V++T++ T KA + ++ K ++
Sbjct: 45 KKKTPEQIDQVLIFLSGMVKDTDDATESDIPKKKTKTAAKAAAAKAP-AKKKLKDELDSS 103
Query: 498 KKVVSKTLDLTISATTHGLSPEQLNAHTELEGKMIADDKLEKERIDARNCLEEYVYDLRN 557
KK K + + LN + + DD + + D + ++ D +
Sbjct: 104 KKAEKKNALDKDDDLNYVKDIDVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDD 163
Query: 558 KLGSEEEFALYIAADDASKLSTQLDETENWLYEEGADVNKSVYISKLDE--------LKA 609
+ E+E + E ++ + ++ +KL LK
Sbjct: 164 DVDDEDEEKKEAKELEKLSDDDDFVWDE----DDSEALRQARKDAKLTATADPVKAYLKQ 219
Query: 610 IG 611
IG
Sbjct: 220 IG 221
>gnl|CDD|233459 TIGR01541, tape_meas_lam_C, phage tail tape measure protein, lambda
family. This model represents a relatively
well-conserved region near the C-terminus of the tape
measure protein of a lambda and related phage. This
protein, which controls phage tail length, is typically
about 1000 residues in length. Both low-complexity
sequence and insertion/deletion events appear common in
this family. Mutational studies suggest a ruler or
template role in the determination of phage tail length.
Similar behavior is attributed to proteins from
distantly related or unrelated families in other phage
[Mobile and extrachromosomal element functions, Prophage
functions].
Length = 332
Score = 29.0 bits (65), Expect = 9.7
Identities = 27/147 (18%), Positives = 48/147 (32%), Gaps = 17/147 (11%)
Query: 465 QKQEAGSENTENKAEKTQEGQSEDAEKKAAEAKKKVV----SKTLDLTISATTHGLSPEQ 520
++ S + E A E E+AE+KA EA KK+ S GL +Q
Sbjct: 22 DEKSLQSRSDEIIALIKLEKLLEEAERKALEALKKLAEATASIRAQNKRQLDRFGLGDKQ 81
Query: 521 ---LNAHTELEGKMIADDKLEKERIDARNCLEEYVYD---------LRNKLGSEEEFALY 568
L+A +++ + + + A+ +Y L L +
Sbjct: 82 RERLDARLQIDRTFRKQQRDLNKAMTAKGLAGSDLYKEQLAAIKAALNEALAELHAYYAA 141
Query: 569 IAADDASKLSTQLDETENWLYEEGADV 595
A L+ ++ E +V
Sbjct: 142 EDALQGDWLAGARSGLADYG-ETATNV 167
>gnl|CDD|222283 pfam13643, DUF4145, Domain of unknown function (DUF4145). This
domain is found in a variety of restriction endonuclease
enzymes. The exact function of this domain is uncertain.
Length = 88
Score = 27.2 bits (61), Expect = 9.8
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 244 MCRSEMEELCKDVFENVEKTLKDCLEK 270
+ R +E+L KD+ K L D ++K
Sbjct: 17 LLRRALEKLLKDLGIKKGKNLNDRIDK 43
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.311 0.128 0.356
Gapped
Lambda K H
0.267 0.0722 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 37,982,643
Number of extensions: 3755947
Number of successful extensions: 3934
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3683
Number of HSP's successfully gapped: 214
Length of query: 763
Length of database: 10,937,602
Length adjustment: 104
Effective length of query: 659
Effective length of database: 6,324,786
Effective search space: 4168033974
Effective search space used: 4168033974
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 63 (28.1 bits)