RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy740
(763 letters)
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor,
protein folding, ATP-binding, Ca binding, chaperone,
nucleotide-binding, phosphoprotein; HET: ATP; 2.30A
{Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Length = 675
Score = 345 bits (886), Expect = e-108
Identities = 166/504 (32%), Positives = 248/504 (49%), Gaps = 64/504 (12%)
Query: 164 KIIASAANPYLGGRNIDYKLAKHFSQEFKQKYNIEPESNPRAFLRLLTEVEKLKKQMSAN 223
K++ +A + + GGR+ D + +HF+ EFK KY I+ NP+A+ R+LT EKLKK +SAN
Sbjct: 222 KVLGTACDKHFGGRDFDLAITEHFADEFKTKYKIDIRENPKAYNRILTAAEKLKKVLSAN 281
Query: 224 STKLPFGIECFMNDIDVKGEMCRSEMEELCKDVFENVEKTLKDCLEKSKLALSDIHSVEI 283
T PF +E MND+DV ++ R E+EEL K + E V + + L ++KL+ ++ VEI
Sbjct: 282 -TNAPFSVESVMNDVDVSSQLSREELEELVKPLLERVTEPVTKALAQAKLSAEEVDFVEI 340
Query: 284 VGGSSRIPAIKGLIEKIFQKTPSTTLNQDEAVARGCALQCAMLSPAVRVRDFSVTDLQVY 343
+GG++RIP +K I + F K STTLNQDEA+A+G A CA+ SP +RVR F D+ Y
Sbjct: 341 IGGTTRIPTLKQSISEAFGKPLSTTLNQDEAIAKGAAFICAIHSPTLRVRPFKFEDIHPY 400
Query: 344 PVVMEWDPSPNEPKDSKNFITVFPEMHAAPFSKKMTFYQNKPF----AIQLYYEGNVPYP 399
V WD + + + VFP + P +K +T + F + P
Sbjct: 401 SVSYSWDKQVEDE----DHMEVFPAGSSFPSTKLITLNRTGDFSMAASYTD-ITQLPPNT 455
Query: 400 SKFIGKYQINDVKPGPDNASQKVTVKVRVNMDGVIGVIAASMVEKVENSGDTESMDVENT 459
+ I ++I V+ S V +K+R + G+ + A +E +E
Sbjct: 456 PEQIANWEITGVQLPEGQDSVPVKLKLRCDPSGLHTIEEAYTIEDIE------------- 502
Query: 460 EEENGQKQEAGSENTENKAEKTQEGQSEDAEKKAAEAKKKVVSKTLDLTISATTHGLSPE 519
K DLTI A T GL +
Sbjct: 503 -----------------------------------AGSDTKTVKKDDLTIVAHTFGLDAK 527
Query: 520 QLNAHTELEGKMIADDKLEKERIDARNCLEEYVYDLRNKLGSEEEFALYIAADDASKLST 579
+LN E E +M+A DKL E D +N LEEY+Y LR KL EEE+A + + + +KL
Sbjct: 528 KLNELIEKENEMLAQDKLVAETEDRKNTLEEYIYTLRGKL--EEEYAPFASDAEKTKLQG 585
Query: 580 QLDETENWLYEEGADVNKSVYISKLDELKAIGEKIRQRKVDYEEKTKA----FENIFCSI 635
L++ E WLY+EG D K+ YI+K +EL ++G IR R + EE+ K +
Sbjct: 586 MLNKAEEWLYDEGFDSIKAKYIAKYEELASLGNIIRGRYLAKEEEKKQAIRSKQEASQMA 645
Query: 636 QIAQKKISMFKEGDERLNHLDAAE 659
+A+K + K E+ E
Sbjct: 646 AMAEKLAAQRKAEAEKKEEKKDTE 669
Score = 220 bits (563), Expect = 2e-62
Identities = 60/163 (36%), Positives = 95/163 (58%), Gaps = 1/163 (0%)
Query: 4 MS-VIGIDFGNESCFIAAARAGGIETIANDYSLRATPSCVAFSDRNRILGVAAKNQTVTN 62
MS G+D GN + +A AR GI+ + N+ S R+TPS V F +NR LG KN+ +N
Sbjct: 1 MSTPFGLDLGNNNSVLAVARNRGIDIVVNEVSNRSTPSVVGFGPKNRYLGETGKNKQTSN 60
Query: 63 MKNTIHGFKRLIGREFKDPHVQDELKFLPYNVSENPDGSIGIKVKYLNEDRVFTPEQITA 122
+KNT+ KR+IG ++ P + E K + E D G +V++ E VF+ Q+ A
Sbjct: 61 IKNTVANLKRIIGLDYHHPDFEQESKHFTSKLVELDDKKTGAEVRFAGEKHVFSATQLAA 120
Query: 123 MLLTKLRETSEIALQCNISDCVLSVPSFYTNAERKALLDAAKI 165
M + K+++T + + NI+D ++VP +YT +R + DAA+I
Sbjct: 121 MFIDKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAARI 163
>3qfu_A 78 kDa glucose-regulated protein homolog; HSP70, KAR2, BIP,
chaperone; HET: ADP; 1.80A {Saccharomyces cerevisiae}
PDB: 3qfp_A 3qml_A 3ldo_A* 3ldl_A 3ldn_A* 3ldp_A*
Length = 394
Score = 274 bits (703), Expect = 3e-85
Identities = 127/378 (33%), Positives = 199/378 (52%), Gaps = 59/378 (15%)
Query: 6 VIGIDFGNE-SCFIAAARAGGIETIANDYSLRATPSCVAFSDRNRILGVAAKNQTVTNMK 64
VIGID G SC +A + G E +AN+ R TPS VAF+D R++G AAKNQ N +
Sbjct: 20 VIGIDLGTTYSC-VAVMKNGKTEILANEQGNRITPSYVAFTDDERLIGDAAKNQVAANPQ 78
Query: 65 NTIHGFKRLIGREFKDPHVQDELKFLPYNVSENPDGSIGIKVKYLNEDRVFTPEQITAML 124
NTI KRLIG ++ D VQ ++K LP+NV N DG ++V E +VFTPE+I+ M+
Sbjct: 79 NTIFDIKRLIGLKYNDRSVQKDIKHLPFNV-VNKDGKPAVEVSVKGEKKVFTPEEISGMI 137
Query: 125 LTKLRETSEIALQCNISDCVLSVPSFYTNAERKALLDAAK--------II---------- 166
L K+++ +E L ++ V++VP+++ +A+R+A DA I+
Sbjct: 138 LGKMKQIAEDYLGTKVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVLRIVNEPTAAAIAY 197
Query: 167 ------------------------------------ASAANPYLGGRNIDYKLAKHFSQE 190
A++ + +LGG + DYK+ + +
Sbjct: 198 GLDKSDKEHQIIVYDLGGGTFDVSLLSIENGVFEVQATSGDTHLGGEDFDYKIVRQLIKA 257
Query: 191 FKQKYNIEPESNPRAFLRLLTEVEKLKKQMSANSTKLPFGIECFMNDIDVKGEMCRSEME 250
FK+K+ I+ N +A +L E EK K+ +S+ I+ F++ ID+ + R++ E
Sbjct: 258 FKKKHGIDVSDNNKALAKLKREAEKAKRALSS-QMSTRIEIDSFVDGIDLSETLTRAKFE 316
Query: 251 ELCKDVFENVEKTLKDCLEKSKLALSDIHSVEIVGGSSRIPAIKGLIEKIFQ-KTPSTTL 309
EL D+F+ K ++ L+ S L D+ + +VGGS+RIP ++ L+E F K S +
Sbjct: 317 ELNLDLFKKTLKPVEKVLQDSGLEKKDVDDIVLVGGSTRIPKVQQLLESYFDGKKASKGI 376
Query: 310 NQDEAVARGCALQCAMLS 327
N DEAVA G A+Q +LS
Sbjct: 377 NPDEAVAYGAAVQAGVLS 394
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex,
ATP-binding, chaperone, nucleotide-BIND phosphoprotein,
stress response; HET: ADP; 1.30A {Homo sapiens} PDB:
1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A*
1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A*
3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* 1ngf_A* ...
Length = 404
Score = 271 bits (696), Expect = 6e-84
Identities = 123/386 (31%), Positives = 195/386 (50%), Gaps = 62/386 (16%)
Query: 1 MAGMSVIGIDFGNE-SCFIAAARAGGIETIANDYSLRATPSCVAFSDRNRILGVAAKNQT 59
M IGID G SC + + G +E IAND R TPS VAF+D R++G AAKNQ
Sbjct: 20 FQSMPAIGIDLGTTYSC-VGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQV 78
Query: 60 VTNMKNTIHGFKRLIGREFKDPHVQDELKFLPYNVSENPDGSIGIKVKYLNEDRVFTPEQ 119
N NTI KRLIGR+F+D VQ ++K P+ V + G ++V+Y E + F PE+
Sbjct: 79 AMNPTNTIFDAKRLIGRKFEDATVQSDMKHWPFRV-VSEGGKPKVQVEYKGETKTFFPEE 137
Query: 120 ITAMLLTKLRETSEIALQCNISDCVLSVPSFYTNAERK--------ALLDAAKII----- 166
I++M+LTK++E +E L + V++VP+++ +++R+ L+ +II
Sbjct: 138 ISSMVLTKMKEIAEAYLGGKVHSAVITVPAYFNDSQRQATKDAGTITGLNVLRIINEPTA 197
Query: 167 --------------------------------------------ASAANPYLGGRNIDYK 182
++A + +LGG + D +
Sbjct: 198 AAIAYGLDKKGCAGGEKNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNR 257
Query: 183 LAKHFSQEFKQKYNIEPESNPRAFLRLLTEVEKLKKQMSANSTKLPFGIECFMNDIDVKG 242
+ H ++EFK+K+ + N RA RL T E+ K+ +S+ ST+ I+ +D
Sbjct: 258 MVSHLAEEFKRKHKKDIGPNKRAVRRLRTACERAKRTLSS-STQASIEIDSLYEGVDFYT 316
Query: 243 EMCRSEMEELCKDVFENVEKTLKDCLEKSKLALSDIHSVEIVGGSSRIPAIKGLIEKIFQ 302
+ R+ EEL D+F + ++ L +KL I + +VGGS+RIP I+ L++ F
Sbjct: 317 SITRARFEELNADLFRGTLEPVEKALRDAKLDKGQIQEIVLVGGSTRIPKIQKLLQDFFN 376
Query: 303 -KTPSTTLNQDEAVARGCALQCAMLS 327
K + ++N DEAVA G A+Q A+L
Sbjct: 377 GKELNKSINPDEAVAYGAAVQAAILI 402
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus}
SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*
Length = 554
Score = 270 bits (693), Expect = 9e-82
Identities = 126/384 (32%), Positives = 196/384 (51%), Gaps = 60/384 (15%)
Query: 1 MAGMSVIGIDFGNE-SCFIAAARAGGIETIANDYSLRATPSCVAFSDRNRILGVAAKNQT 59
M+ +GID G SC + + G +E IAND R TPS VAF+D R++G AAKNQ
Sbjct: 1 MSKGPAVGIDLGTTYSC-VGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQV 59
Query: 60 VTNMKNTIHGFKRLIGREFKDPHVQDELKFLPYNVSENPDGSIGIKVKYLNEDRVFTPEQ 119
N NT+ KRLIGR F D VQ ++K P+ V + ++V+Y E + F PE+
Sbjct: 60 AMNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPK-VQVEYKGETKSFYPEE 118
Query: 120 ITAMLLTKLRETSEIALQCNISDCVLSVPSFYTNAERKALLDAAK--------II----- 166
+++M+LTK++E +E L +++ V++VP+++ +++R+A DA II
Sbjct: 119 VSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTA 178
Query: 167 ------------------------------------------ASAANPYLGGRNIDYKLA 184
++A + +LGG + D ++
Sbjct: 179 AAIAYGLDKKVGAERNVLIFDLGGGTFDVSILTIAAGIFEVKSTAGDTHLGGEDFDNRMV 238
Query: 185 KHFSQEFKQKYNIEPESNPRAFLRLLTEVEKLKKQMSANSTKLPFGIECFMNDIDVKGEM 244
HF EFK+K+ + N RA RL T E+ K+ +S +ST+ I+ ID +
Sbjct: 239 NHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLS-SSTQASIEIDSLYEGIDFYTSI 297
Query: 245 CRSEMEELCKDVFENVEKTLKDCLEKSKLALSDIHSVEIVGGSSRIPAIKGLIEKIFQ-K 303
R+ EEL D+F ++ L +KL S IH + +VGGS+RIP I+ L++ F K
Sbjct: 298 TRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGK 357
Query: 304 TPSTTLNQDEAVARGCALQCAMLS 327
+ ++N DEAVA G A+Q A+LS
Sbjct: 358 ELNKSINPDEAVAYGAAVQAAILS 381
Score = 46.7 bits (112), Expect = 2e-05
Identities = 15/71 (21%), Positives = 35/71 (49%), Gaps = 14/71 (19%)
Query: 496 AKKKVVSKTLDLTISATTHGLSPEQLNAHTELEGKMIAD-------DKLEKERIDARNCL 548
A K K +TI+ LS E ++E +M+ + D+ +++++ ++N L
Sbjct: 490 AVDKSTGKENKITITNDKGRLSKE------DIE-RMVQEAEKYKAEDEKQRDKVSSKNSL 542
Query: 549 EEYVYDLRNKL 559
E Y ++++ +
Sbjct: 543 ESYAFNMKATV 553
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor,
coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia
coli} SCOP: c.55.1.1 c.55.1.1
Length = 383
Score = 203 bits (520), Expect = 5e-59
Identities = 112/397 (28%), Positives = 188/397 (47%), Gaps = 87/397 (21%)
Query: 4 MS-VIGIDFG--NESCFIAAARAGGIETIANDYSLRATPSCVAFSDRN-RILGVAAKNQT 59
M +IGID G N SC +A + N R TPS +A++ ++G AK Q
Sbjct: 1 MGKIIGIDLGTTN-SC-VAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQA 58
Query: 60 VTNMKNTIHGFKRLIGREFKDPHVQDELKFLPYNVSENPDGSIGIKVKYLNEDRVFTPEQ 119
VTN +NT+ KRLIGR F+D VQ ++ +P+ + +G ++VK + P Q
Sbjct: 59 VTNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVK----GQKMAPPQ 114
Query: 120 ITAMLLTKLRETSEIALQCNISDCVLSVPSFYTNAERK--------ALLDAAKII----- 166
I+A +L K+++T+E L +++ V++VP+++ +A+R+ A L+ +II
Sbjct: 115 ISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTA 174
Query: 167 ---------------------------------------------ASAANPYLGGRNIDY 181
A+ + +LGG + D
Sbjct: 175 AALAYGLDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDS 234
Query: 182 KLAKHFSQEFKQKYNIEPESNPRAFLRLLTEVEKLKKQMS-ANSTK--LPFGIECFMNDI 238
+L + +EFK+ I+ ++P A RL EK K ++S A T LP+ I
Sbjct: 235 RLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPY--------I 286
Query: 239 --DVKG------EMCRSEMEELCKDVFENVEKTLKDCLEKSKLALSDIHSVEIVGGSSRI 290
D G ++ R+++E L +D+ + LK L+ + L++SDI V +VGG +R+
Sbjct: 287 TADATGPKHMNIKVTRAKLESLVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQTRM 346
Query: 291 PAIKGLIEKIFQKTPSTTLNQDEAVARGCALQCAMLS 327
P ++ + + F K P +N DEAVA G A+Q +L+
Sbjct: 347 PMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVLT 383
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding,
protein folding, acetylation, ATP-binding, cell inner
membrane; NMR {Escherichia coli}
Length = 605
Score = 196 bits (500), Expect = 3e-54
Identities = 110/394 (27%), Positives = 188/394 (47%), Gaps = 81/394 (20%)
Query: 4 MS-VIGIDFGN-ESCFIAAARAGGIETIANDYSLRATPSCVAFSDRN-RILGVAAKNQTV 60
M +IGID G SC +A + N R TPS +A++ ++G AK Q V
Sbjct: 1 MGKIIGIDLGTTNSC-VAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAV 59
Query: 61 TNMKNTIHGFKRLIGREFKDPHVQDELKFLPYNVSENPDGSIGIKVKYLNEDRVFTPEQI 120
TN +NT+ KRLIGR F+D VQ ++ +P+ + +G ++VK + P QI
Sbjct: 60 TNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVK----GQKMAPPQI 115
Query: 121 TAMLLTKLRETSEIALQCNISDCVLSVPSFYTNAERK--------ALLDAAKII------ 166
+A +L K+++T+E L +++ V++VP+++ +A+R+ A L+ +II
Sbjct: 116 SAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAA 175
Query: 167 --------------------------------------------ASAANPYLGGRNIDYK 182
A+ + +LGG + D +
Sbjct: 176 ALAYGLDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSR 235
Query: 183 LAKHFSQEFKQKYNIEPESNPRAFLRLLTEVEKLKKQMS-ANSTK--LPFGIECFMND-- 237
L + +EFK+ I+ ++P A RL EK K ++S A T LP+ D
Sbjct: 236 LINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPY----ITADAT 291
Query: 238 ----IDVKGEMCRSEMEELCKDVFENVEKTLKDCLEKSKLALSDIHSVEIVGGSSRIPAI 293
+++K + R+++E L +D+ + LK L+ + L++SDI V +VGG +R+P +
Sbjct: 292 GPKHMNIK--VTRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQTRMPMV 349
Query: 294 KGLIEKIFQKTPSTTLNQDEAVARGCALQCAMLS 327
+ + + F K P +N DEAVA G A+Q +L+
Sbjct: 350 QKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVLT 383
Score = 43.4 bits (103), Expect = 3e-04
Identities = 30/129 (23%), Positives = 56/129 (43%), Gaps = 22/129 (17%)
Query: 496 AKKKVVSKTLDLTISATTHGLSPEQLNAHTELEGKMIAD-------DKLEKERIDARNCL 548
AK K K +TI A++ GL+ +++ KM+ D D+ E + RN
Sbjct: 488 AKDKNSGKEQKITIKASS-GLNEDEIQ-------KMVRDAEANAEADRKFDELVQTRNQG 539
Query: 549 EEYVYDLRNKLGSEEEFALYIAADDASKLSTQLDETENWLYEEGADVNKSVYISKLDELK 608
+ ++ R ++ EE + ADD + + + L E L E + +K+ EL
Sbjct: 540 DHLLHSTRKQV---EEAGDKLPADDKTAIESALTALETALKGEDKAAIE----AKMQELA 592
Query: 609 AIGEKIRQR 617
+ +K+ +
Sbjct: 593 QVSQKLMEI 601
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain
rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus
HTA426}
Length = 509
Score = 171 bits (436), Expect = 3e-46
Identities = 106/390 (27%), Positives = 175/390 (44%), Gaps = 104/390 (26%)
Query: 4 MS-VIGIDFG-NESCFIAAARAGGIETIANDYSLRATPSCVAFSDRNRILGVAAKNQTVT 61
MS +IGID G SC +A G ++ I N R TPS VAF + R++G AK Q +T
Sbjct: 1 MSKIIGIDLGTTNSC-VAVLEGGEVKVIPNPEGNRTTPSVVAFKNGERLVGEVAKRQAIT 59
Query: 62 NMKNTIHGFKRLIGREFKDPHVQDELKFLPYNVSENPDGSIGIKVKYLNEDRVFTPEQIT 121
N NTI KR +G ++K +++ E + +TP++I+
Sbjct: 60 N-PNTIISIKRHMGTDYK------------------------VEI----EGKQYTPQEIS 90
Query: 122 AMLLTKLRETSEIALQCNISDCVLSVPSFYTNAERKALLDAAK--------II------- 166
A++L L+ +E L ++ V++VP+++ +A+R+A DA + II
Sbjct: 91 AIILQYLKSYAEDYLGEPVTRAVITVPAYFNDAQRQATKDAGRIAGLEVERIINEPTAAA 150
Query: 167 --------------------------------------ASAANPYLGGRNIDYKLAKHFS 188
A+A + +LGG + D + +
Sbjct: 151 LAYGLDKEEDQTILVYDLGGGTFDVSILELGDGVFEVKATAGDNHLGGDDFDQVIIDYLV 210
Query: 189 QEFKQKYNIEPESNPRAFLRLLTEVEKLKKQMS-ANSTK--LPFGIECFMNDI--DVKG- 242
+FKQ++ I+ + A RL EK KK++S T+ LPF I + G
Sbjct: 211 NQFKQEHGIDLSKDKMALQRLKDAAEKAKKELSGVTQTQISLPF--------ISANENGP 262
Query: 243 -----EMCRSEMEELCKDVFENVEKTLKDCLEKSKLALSDIHSVEIVGGSSRIPAIKGLI 297
+ R++ EEL + E ++ L+ + L +DI V +VGGS+RIPA++ I
Sbjct: 263 LHLEMTLTRAKFEELSAHLVERTMGPVRQALQDAGLTPADIDKVILVGGSTRIPAVQEAI 322
Query: 298 EKIFQKTPSTTLNQDEAVARGCALQCAMLS 327
++ K P +N DE VA G A+Q +++
Sbjct: 323 KRELGKEPHKGVNPDEVVAIGAAIQGGVIA 352
Score = 29.5 bits (67), Expect = 4.6
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 15/58 (25%)
Query: 496 AKKKVVSKTLDLTISATTHGLSPEQLNAHTELEGKMIAD-------DKLEKERIDARN 546
AK +K +TI +++ GLS E++ +MI + D+ KE + RN
Sbjct: 457 AKDLGTNKEQSITIKSSS-GLSEEEIQ-------RMIKEAEENAEADRKRKEAAELRN 506
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 93.0 bits (230), Expect = 2e-19
Identities = 113/670 (16%), Positives = 211/670 (31%), Gaps = 163/670 (24%)
Query: 64 KNTIHGFKRLIGREFKDPHVQDELKFLPYNV--SENPDGSIGIKVKYLNEDRVFTPEQIT 121
K+ + F+ F VQD K ++ E D I K T
Sbjct: 19 KDILSVFEDAFVDNFDCKDVQDMPK----SILSKEEIDHIIMSK----------DAVSGT 64
Query: 122 AMLLTKLRETSEIALQCNISDCVLSVPSFYTNAERKALLD----AAKIIASAANPYLGGR 177
L L E + V F R + + I P + R
Sbjct: 65 LRLFWTLLSKQE-----EM------VQKFVEEVLRI---NYKFLMSPIKTEQRQPSMMTR 110
Query: 178 NIDYKLAKHFS--QEFKQKYNIEPESNPRAFLRLLTEVEKLK--------------KQMS 221
+ + ++ Q F KYN+ S + +L+L + +L+ K
Sbjct: 111 MYIEQRDRLYNDNQVFA-KYNV---SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV 166
Query: 222 ANSTKLPFGIECFMND----IDVKGEMCRSEMEELCKDVFENVEKTLKDCLEKSKLALSD 277
A L + ++C M+ +++ C S + V E ++K L ++ + + SD
Sbjct: 167 ALDVCLSYKVQCKMDFKIFWLNL-KN-CNSP-----ETVLEMLQKLLYQ-IDPNWTSRSD 218
Query: 278 IHSVEIVGGSSRIPAIKGLIEKIFQKTP-STTL----N-QDEAVARGCALQCAMLSPAVR 331
HS I RI +I+ + ++ + P L N Q+ L C +L +
Sbjct: 219 -HSSNI---KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL---LT 271
Query: 332 VRDFSVTD----LQVYPVVMEWDPSPNEPKDSKNFITVFPEMHAAPFSKKMTFYQNKPFA 387
R VTD + ++ P + K+ + + + +++ P
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVL--TTNPRR 329
Query: 388 IQLYYEGNVPYPSKFIGKYQINDVKPGPDNASQKVTVKVRVNMDGVIGVIAASMVEKVEN 447
+ + I + I D DN VN D + +I +
Sbjct: 330 LSI------------IAE-SIRDGLATWDNWKH-------VNCDKLTTIIES-------- 361
Query: 448 SGDTESMDVENTEEENGQKQEAG--SENTENKAEKT-----QEGQSEDAEKKAAE-AKKK 499
S++V E + + + D + K
Sbjct: 362 -----SLNVLEPAEYRKMFDRLSVFPPSA-HIPTILLSLIWFDVIKSDVMVVVNKLHKYS 415
Query: 500 VVSK-TLDLTISATTHGLSPEQLNAHTELEGKMIADDKLEKERIDARNCLEEYVYDLRNK 558
+V K + TIS + + EL+ K+ + L + +D N + + D
Sbjct: 416 LVEKQPKESTIS--IPSI-------YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP 466
Query: 559 LGSEEEFALYIAADDASKLSTQLDETENWLYEEGADVNKSVYISKLDELKAIGEKIRQRK 618
++ F +I L E+ E + + V+ LD + + +KIR
Sbjct: 467 PYLDQYFYSHIG--------HHLKNIEH---PERMTLFRMVF---LD-FRFLEQKIRHDS 511
Query: 619 VDYEEKTKAFENIFCSIQIAQKKISMFKEGDERL-----NHLDAAEITVVEEKVANALKW 673
+ + + N ++ + I ERL + L E ++ K + L+
Sbjct: 512 TAW-NASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRI 570
Query: 674 AENAQSLMNE 683
A LM E
Sbjct: 571 A-----LMAE 575
Score = 80.7 bits (198), Expect = 1e-15
Identities = 98/620 (15%), Positives = 190/620 (30%), Gaps = 173/620 (27%)
Query: 68 HGFKRLIGREFKDPHVQDELKFLPYNVSENPDGSIGIKV--KYLNEDRVFTPEQITAMLL 125
+ +K ++ F+D V + F +V + P + + + T L
Sbjct: 16 YQYKDIL-SVFEDAFVDN---FDCKDVQDMPKSILSKEEIDHIIMSK---DAVSGTLRLF 68
Query: 126 TKLRETSEIALQCNISDCVLSVPSFYTNAERKALLD----AAKIIASAANPYLGGRNIDY 181
L E + V F R + + I P + R
Sbjct: 69 WTLLSKQE-----EM------VQKFVEEVLRI---NYKFLMSPIKTEQRQPSMMTRMYIE 114
Query: 182 KLAKHFS--QEFKQKYNIEPESNPRAFLRLLTEVEKLK--------------KQMSANST 225
+ + ++ Q F KYN+ S + +L+L + +L+ K A
Sbjct: 115 QRDRLYNDNQVFA-KYNV---SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV 170
Query: 226 KLPFGIECFMND----IDVKGEMCRSEMEELCKDVFENVEKTLKDCLEKSKLALSDIHSV 281
L + ++C M+ +++ C S + V E ++K L ++ + + SD HS
Sbjct: 171 CLSYKVQCKMDFKIFWLNL-KN-CNSP-----ETVLEMLQKLLYQ-IDPNWTSRSD-HSS 221
Query: 282 EIVGGSSRIPAIKGLIEKIFQKTP-STTL----N-QDEAVARGCALQCAMLSPAVRVRDF 335
I RI +I+ + ++ + P L N Q+ L C +L + R
Sbjct: 222 NI---KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL---LTTRFK 275
Query: 336 SVTD----LQVYPVVMEWDPSPNEPKDSKNFITVFPEMHAAPFSKKMTFYQNKPFAIQLY 391
VTD + ++ P + K+ + + + +++ P + +
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVL--TTNPRRLSI- 332
Query: 392 YEGNVPYPSKFIGKYQINDVKPGPDNASQKVTVKVRVNMDGVIGVIAASMVEKVENSGDT 451
I + I D DN VN D + +I +S+
Sbjct: 333 -----------IAE-SIRDGLATWDNWKH-------VNCDKLTTIIESSL---------- 363
Query: 452 ESMDVENTEEENGQKQEAG--SENTENKAEKT-----QEGQSEDAEKKAAE-AKKKVVSK 503
+V E + + + D + K +V K
Sbjct: 364 ---NVLEPAEYRKMFDRLSVFPPSA-HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419
Query: 504 -TLDLTISATTHGLSPEQLNAHTELEGKMIADDKLEKERIDARNCLEEYVYDLRNKLGSE 562
+ TIS + + EL+ K+ + L + +D N + + D
Sbjct: 420 QPKESTIS--IPSI-------YLELKVKLENEYALHRSIVDHYNIPKTFDSD-------- 462
Query: 563 EEFALYIAADDASKLSTQLDETENWLYEEGADVNKSVYISKLDELKAIGEKIRQRKVDYE 622
D LD + Y +I LK I ++
Sbjct: 463 ----------DLIPP--YLD---QYFYS---------HIG--HHLKNI---------EHP 487
Query: 623 EKTKAFENIFCSIQIAQKKI 642
E+ F +F + ++KI
Sbjct: 488 ERMTLFRMVFLDFRFLEQKI 507
Score = 76.8 bits (188), Expect = 1e-14
Identities = 75/517 (14%), Positives = 144/517 (27%), Gaps = 151/517 (29%)
Query: 237 DIDVKGEMCRSEMEELCKDVFENVEKTLK---DC---LEKSKLALSDIHSVEIVGGSSRI 290
D + E + KD+ E DC + K LS I+ +
Sbjct: 8 DFET------GEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAV 61
Query: 291 PAIKGLIEKIFQKTPSTTLNQDEAVARGCALQCAMLSPAVRVRDFSVTDLQV-YPVVMEW 349
L + K Q+E V + F L++ Y +
Sbjct: 62 SGTLRLFWTLLSK-------QEEMVQK-----------------FVEEVLRINYKFL--M 95
Query: 350 DPSPNEPKDSKNFITVFPEMHAAPFSKKMTFYQNKPFAIQLYYEGNVPYPSKFIGKYQIN 409
P E + P M + ++ N Q++ + NV ++ ++
Sbjct: 96 SPIKTEQRQ--------PSMMTRMYIEQRDRLYNDN---QVFAKYNVSRLQPYL---KLR 141
Query: 410 DVKPGPDNASQKVTVKVRVNMDGVIG----VIAASMV--EKVE----------NSGDTES 453
A ++ V +DGV+G +A + KV+ N + S
Sbjct: 142 -------QALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS 194
Query: 454 MD-----VENTEEENGQKQEAGSENTENKAEKTQEGQSED----AEKKAAEA-------- 496
+ ++ + + S+++ N + Q+E K
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ 254
Query: 497 KKKVV------SKTLDLTISAT-THGLSPEQLNAHTELEGKMIADDKLEKERIDARNCLE 549
K K L T T LS H L+ + E + + L+
Sbjct: 255 NAKAWNAFNLSCKILLTTRFKQVTDFLSAAT-TTHISLDHHSMTLTPDEVKSLLL-KYLD 312
Query: 550 EYVYDLRNKLGSEEEFAL-YIAADDASKLSTQLDETENWLYEEGADVNKSVYISKLDELK 608
DL ++ + L IA + L +NW + + + S L+ L+
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAE----SIRDGLATWDNWKHVNCDKLTTIIESS-LNVLE 367
Query: 609 AIGEKIRQRKVDYEEKTKAFENIFCSIQIAQKKISMFKEGDERLNHLDAAEITVVEEKVA 668
+ R+ ++ S+ F A I +
Sbjct: 368 P--AEYRKM---FDR---------LSV---------FPPS---------AHIP---TILL 392
Query: 669 NALKWA----ENAQSLMNEFTDRT---KDAPVPTSEI 698
+ + W + ++N+ + K T I
Sbjct: 393 SLI-WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI 428
Score = 45.6 bits (107), Expect = 7e-05
Identities = 34/255 (13%), Positives = 73/255 (28%), Gaps = 74/255 (29%)
Query: 524 HTELE-GKM------IADDKLE--KERIDARNCLEEYVYDLRNKLGSEEEFALYIAADDA 574
H + E G+ I + + D ++ + ++ L EE + ++ D
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDM----PKSILSKEEIDHIIMSKDAV 61
Query: 575 SK-------------------LSTQLDETENWLYEEGADVNKS------VYISKLDELKA 609
S + L +L + +YI + D L
Sbjct: 62 SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121
Query: 610 IGEKIRQRKVDYEEKTKAFENIFCSIQIAQKKIS---MFKEGDERLNHLDAAEI---TVV 663
+ + V + ++ A K + + G + A ++ V
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQALLELRPA-KNVLIDGVLGSGKTWV----ALDVCLSYKV 176
Query: 664 EEKVANALKWA------------ENAQSLMNEFT-------DRTKDAPVPTSEIKNEMQN 704
+ K+ + W E Q L+ + D + + + I+ E++
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236
Query: 705 LNNAVNPVFSKPKPQ 719
L + SKP
Sbjct: 237 L------LKSKPYEN 245
Score = 43.3 bits (101), Expect = 3e-04
Identities = 25/143 (17%), Positives = 47/143 (32%), Gaps = 41/143 (28%)
Query: 594 DVNKSVYISK-LDELKAIGEKIRQRKVDYEEKTKAFENIFCSIQIAQKKI-SMFKEGDER 651
D+ KS+ + +D + I K +F ++ Q+++ F E R
Sbjct: 40 DMPKSILSKEEIDHI--IMSKDAVSGTLR---------LFWTLLSKQEEMVQKFVEEVLR 88
Query: 652 LNHLDAAEITVVEEKVANALKWAENAQSLMNEFTDRTKDAPVPTSEIKNEMQNLNNAVNP 711
+N+ K+ LM+ + + T + L N N
Sbjct: 89 INY-----------------KF------LMSPIKTEQRQPSMMTRMYIEQRDRLYN-DNQ 124
Query: 712 VFSK---PKPQPKVEKKENGVQQ 731
VF+K + QP K + +
Sbjct: 125 VFAKYNVSRLQP-YLKLRQALLE 146
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 64.3 bits (156), Expect = 1e-10
Identities = 86/525 (16%), Positives = 168/525 (32%), Gaps = 192/525 (36%)
Query: 14 ESCFIAAARAGGIETIA--------NDY--SLRAT----PSCVAFSDRNRILGVAAKNQT 59
S A G + +A +DY LR V ++ +A +T
Sbjct: 142 NSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVG-----DLIKFSA--ET 194
Query: 60 VTNMKNTIHGFKRLIGREFKDPHVQDELKFLPYNVSENPDGS-----------IGIK--V 106
++ + T +++ + + L++L N S PD IG+
Sbjct: 195 LSELIRTTLDAEKVFTQGL------NILEWLE-NPSNTPDKDYLLSIPISCPLIGVIQLA 247
Query: 107 KYLNEDRV--FTPEQITAMLLTKLRETSEI--ALQCNISDCVLSVPSFYTNAERKALLDA 162
Y+ ++ FTP ++ + L + + A+ +D S SF+ + RKA+
Sbjct: 248 HYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETD---SWESFFVSV-RKAI--- 300
Query: 163 AKIIASAANPYLGGRNIDYKLAKHFSQEFKQKYNIEPESNPRAFLRLLTEVEKLKKQMSA 222
++ ++G R E ++ P +
Sbjct: 301 -TVLF-----FIGVR----------CYEAYPNTSLPPS-------------------ILE 325
Query: 223 NSTKLPFGIECFMNDIDVKGEMCRSEMEELCKDVFENVEKTLKDCLEKSKLALSDIHSVE 282
+S + G+ M + + + + ++++ V KT ++ +S ++ +
Sbjct: 326 DSLENNEGVPSPM--LSISN-LTQEQVQDY-------VNKTNSHLPAGKQVEISLVNGAK 375
Query: 283 --IVGGSSRIPAIKGL---IEKIFQKTPSTTLNQDEAVARGCALQCAM------------ 325
+V G + ++ GL + K K PS L+Q L+ +
Sbjct: 376 NLVVSGPPQ--SLYGLNLTLRKA--KAPS-GLDQSRIPFSERKLKFSNRFLPVASPFHSH 430
Query: 326 -LSPAVR--VRD-------FSVTDLQVYPVVMEWDP---------SPNEPKDSKNFITVF 366
L PA +D F+ D+Q+ PV +D S + + + I
Sbjct: 431 LLVPASDLINKDLVKNNVSFNAKDIQI-PV---YDTFDGSDLRVLSGSISERIVDCIIRL 486
Query: 367 PEMH---AAPFSKKMTFYQNKPFAIQLYYEGNVPYPSKFIGKYQINDVKPGPDNASQKVT 423
P + F + + D GP AS +
Sbjct: 487 P-VKWETTTQFK-----------------------ATHIL------DF--GPGGASG-LG 513
Query: 424 VKVRVNMDGV-IGVIAASMVEKVENSGDTESMDVENTEEENGQKQ 467
V N DG + VI A ++D+ N +++ G KQ
Sbjct: 514 VLTHRNKDGTGVRVIVAG------------TLDI-NPDDDYGFKQ 545
Score = 58.5 bits (141), Expect = 8e-09
Identities = 103/668 (15%), Positives = 189/668 (28%), Gaps = 292/668 (43%)
Query: 143 CVLSVP-SFYTNAERKALLDAAKIIASAANPYLGGRNIDYKLAKHFSQEFKQKYNIEPES 201
VL VP + + A + L + + P ++ F + EP +
Sbjct: 18 HVLLVPTASFFIASQ--LQE--QFNKILPEP---------------TEGFAA--DDEPTT 56
Query: 202 NPRAFLRLLTEVEKLKKQMSANSTKLPFGIECFMNDIDVKGEMCRSEMEELCKDVFENVE 261
L+ + F+ S +E F+ V
Sbjct: 57 P----AELVGK---------------------FLG-------YVSSLVEPSKVGQFDQVL 84
Query: 262 KTLKDCLEKSKLALSDIHSV--EIVGGS-SRIPAIKGLIEKIFQ-----KTPSTTLNQD- 312
E L +DIH++ +++ + + + K LI+ K P +
Sbjct: 85 NLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSA 144
Query: 313 --EAVARGCA------------------LQCAML--SPAVRVRDF---SVTDLQ------ 341
AV G A L+ L + V V D S L
Sbjct: 145 LFRAVGEGNAQLVAIFGGQGNTDDYFEELR--DLYQTYHVLVGDLIKFSAETLSELIRTT 202
Query: 342 -----VYPV---VMEW--DPSPNEPKDSKNFITVFPEMHAAPFSKKMTFYQNKPFAIQLY 391
V+ ++EW +PS P K+++ + P S
Sbjct: 203 LDAEKVFTQGLNILEWLENPSN-TP--DKDYLL------SIPIS---------------- 237
Query: 392 YEGNVPYPSKFIGKYQINDVKPGPDNASQKVTVKV--------RVNMDGVI----GVIAA 439
P IG Q+ A VT K+ R + G G++ A
Sbjct: 238 ----CP----LIGVIQL---------AHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTA 280
Query: 440 SMVEKVENSGDTESMDVENTEEENGQK------------QEAGSENTENKAEKTQEGQSE 487
+ + + ES + +K EA NT ++ S
Sbjct: 281 VAIAE---TDSWESF------FVSVRKAITVLFFIGVRCYEAYP-NTSLPPSILED--SL 328
Query: 488 DAEKKAAEAKKKVVSKTLDLTISATTHGLSPEQLNAHTELEGKMIADDKLEKERIDARNC 547
+ + + L+IS L+ EQ+ + ++ N
Sbjct: 329 ENNEGVP---------SPMLSIS----NLTQEQVQDY-----------------VNKTNS 358
Query: 548 LEEYVYDLRNKLGSEEEFALYIAADDASKLSTQLDETENWLYEEGADVN-------KSVY 600
L + + + I+ L N GA N +S+Y
Sbjct: 359 ----------HLPAGK--QVEIS------LV-------N-----GAK-NLVVSGPPQSLY 387
Query: 601 --ISKLDELKAIGEKIRQRKVDYEEKTKAFENIFCSIQIAQKKISM-FKEGDERLNH--- 654
L + KA + Q ++ + E+ F N F ++ F H
Sbjct: 388 GLNLTLRKAKA-PSGLDQSRIPFSERKLKFSNRFL-------PVASPF--------HSHL 431
Query: 655 LDAAEITVVEEKVANALKWAENAQSLMNEFTDRTKDAPV-PTSEIKNEMQNLNNAVNP-- 711
L A + ++ V N + + NA+ + PV T + + ++ L+ +++
Sbjct: 432 LVPASDLINKDLVKNNVSF--NAKDIQ---------IPVYDTFDGSD-LRVLSGSISERI 479
Query: 712 ---VFSKP 716
+ P
Sbjct: 480 VDCIIRLP 487
Score = 49.3 bits (117), Expect = 5e-06
Identities = 57/336 (16%), Positives = 96/336 (28%), Gaps = 122/336 (36%)
Query: 241 KGEMCRSEME--ELCKDVFENVEKTLKDCLEKSKLALSDIHSVEIVGGSSRIPAIKGLIE 298
+G M + + +DV+ D H + G S I
Sbjct: 1629 QG-MGMDLYKTSKAAQDVWNRA----------------DNHFKDTYGFS---------IL 1662
Query: 299 KIFQKTPSTTLNQDEAVARGCALQCAMLSPAVRVRDFSVTDLQVYPVVMEWDPSPNEPKD 358
I P L +G + R Y M ++ +
Sbjct: 1663 DIVINNP-VNLTIHFGGEKGKRI---------REN---------YSA-MIFETIVDGKLK 1702
Query: 359 SKNFITVFPEMHAAPFSKKMTFY------------QNKPFAI---------QLYYEGNVP 397
++ +F E++ S TF Q P A+ L +G +P
Sbjct: 1703 TEK---IFKEINEH--STSYTFRSEKGLLSATQFTQ--P-ALTLMEKAAFEDLKSKGLIP 1754
Query: 398 YPSKF----IGKY----QINDVKPGPDNASQKVTVKVR-------VNMD-------GVIG 435
+ F +G+Y + DV V R V D G+I
Sbjct: 1755 ADATFAGHSLGEYAALASLADVMSIESLVE---VVFYRGMTMQVAVPRDELGRSNYGMIA 1811
Query: 436 VIAASMVEKVENSGDTESMD--VENTEEENGQKQEAGSENTENKAEKTQ---EGQSEDAE 490
+ + S E++ VE + G E + N EN+ Q G +
Sbjct: 1812 INPGRVAA----SFSQEALQYVVERVGKRTGWLVEIVNYNVENQ----QYVAAG-----D 1858
Query: 491 KKAAEAKKKVVS--KTLDLTISATTHGLSPEQLNAH 524
+A + V++ K + I LS E++ H
Sbjct: 1859 LRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGH 1894
Score = 31.9 bits (72), Expect = 0.91
Identities = 20/131 (15%), Positives = 32/131 (24%), Gaps = 49/131 (37%)
Query: 1 MAGM--SVIGIDFGNES----CFIAAARAGGIETIANDYSLRATPSCVAFSDRNRILGVA 54
M + + F E+ R G + I N N
Sbjct: 1809 MIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNY---------------N-----V 1848
Query: 55 AKNQTVTNMKNTIHGFKRLIGREFKDPHVQDELKFLPYNVSENPDGSIGIKVKYLNEDRV 114
Q V G R + D V + L F+ I + L +
Sbjct: 1849 ENQQYV------AAGDLRAL-----D-TVTNVLNFI---------KLQKIDIIELQKS-- 1885
Query: 115 FTPEQITAMLL 125
+ E++ L
Sbjct: 1886 LSLEEVEGHLF 1896
>3lof_A Heat shock 70 kDa protein 1; structural genomics, HSPA1B, HSP70,
PSI-2, prote structure initiative; 2.40A {Homo sapiens}
PDB: 2lmg_A
Length = 113
Score = 57.2 bits (138), Expect = 3e-10
Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Query: 538 EKERIDARNCLEEYVYDLRNKLGSEEEFALYIAADDASKLSTQLDETENWLYEEGADVNK 597
ER+ A+N LE Y +++++ + +E I+ D K+ + E +WL + K
Sbjct: 4 AAERVSAKNALESYAFNMKSAV-EDEGLKGKISEADKKKVLDKCQEVISWL-DANTLAEK 61
Query: 598 SVYISKLDELKAIGEKIRQR 617
+ K EL+ + I
Sbjct: 62 DEFEHKRKELEQVCNPIISG 81
>2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A
{Caenorhabditis elegans}
Length = 120
Score = 57.3 bits (138), Expect = 3e-10
Identities = 15/85 (17%), Positives = 33/85 (38%), Gaps = 2/85 (2%)
Query: 533 ADDKLEKERIDARNCLEEYVYDLRNKLGSEEEFALYIAADDASKLSTQLDETENWLYEEG 592
+ LE Y ++L+ + +E+ I+ +D K+ + DE WL +
Sbjct: 8 HHHSSGLVPRGSHMGLESYAFNLKQTI-EDEKLKDKISPEDKKKIEDKCDEILKWL-DSN 65
Query: 593 ADVNKSVYISKLDELKAIGEKIRQR 617
K + + +L+ + I +
Sbjct: 66 QTAEKEEFEHQQKDLEGLANPIISK 90
>1ud0_A HSC70, 70 kDa heat-shock-like protein; chaperone; 3.45A {Rattus
norvegicus} SCOP: a.8.4.1
Length = 113
Score = 51.1 bits (122), Expect = 4e-08
Identities = 14/77 (18%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Query: 541 RIDARNCLEEYVYDLRNKLGSEEEFALYIAADDASKLSTQLDETENWLYEEGADVNKSVY 600
+ LE Y ++++ + +E+ I +D K+ + +E +WL + K +
Sbjct: 2 VPRGSHMLESYAFNMKATV-EDEKLQGKINDEDKQKILDKCNEIISWLDKN-QTAEKEEF 59
Query: 601 ISKLDELKAIGEKIRQR 617
+ EL+ + I +
Sbjct: 60 EHQQKELEKVCNPIITK 76
>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB,
PARM, structural PROT; 1.90A {Thermoplasma acidophilum}
SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A*
Length = 346
Score = 47.8 bits (113), Expect = 7e-06
Identities = 48/368 (13%), Positives = 93/368 (25%), Gaps = 102/368 (27%)
Query: 3 GMSVIGIDFGNESCFIAAARAGGIETIANDYSLRATPSCVAFSD-RNRILGVAAKNQTVT 61
M V+G+D G G + I D PS A ++ + +G +
Sbjct: 20 HMVVVGLDVGY----------GDTKVIGVDGKRIIFPSRWAVTETESWGIGGKIPVLSTD 69
Query: 62 NMKNTIHGFKRLIGREFKDPHVQDELKFLPYNVSENPDGSIGIKVKYLNEDRVFTPEQIT 121
K + G + G ++ D ++
Sbjct: 70 -----GGQTKFIYG-----------------------KYASGNNIRVPQGDGRLASKEAF 101
Query: 122 AMLLTKLRETSEIALQCNISDCV-LSVPSFYTNAERKALLDAAKIIASAANPY------- 173
++ L E+ + + P + E KA +A +
Sbjct: 102 PLIAAALWESGIHNDGSPVDLVIGSGTPLGTFDLEVKAAKEALENKVLTVTGPEGEVRQF 161
Query: 174 -----------------------------------LGGRNIDYKLAKHFSQEFKQKYNIE 198
+G R D E +
Sbjct: 162 NITRLIMRPQGVGAALYLLNQGIIEQQPGYGVVIDVGSRTTDVLTINLMDMEPVVEL--- 218
Query: 199 PESNPRAFLRLLTEVEKLKKQMSANSTKLPFGIECFMNDIDVKG------EMCRSEMEEL 252
S ++ + + + + E + + + E+ +E+L
Sbjct: 219 SFSLQIGVGDAISALSRKIAKETGFVVPFDLAQEALSHPVMFRQKQVGGPEVSGPILEDL 278
Query: 253 CKDVFENVEKTLKDCLEKSKLALSDIHSVEIVGGSSRIPAIKGLIEKIFQKTPSTTLNQD 312
+ EN+ L+ + + S+ VGG S + I E+I T +D
Sbjct: 279 ANRIIENIRLNLRG-------EVDRVTSLIPVGGGSNL--IGDRFEEIAPGTLVKIKPED 329
Query: 313 --EAVARG 318
A A G
Sbjct: 330 LQFANALG 337
>2zgy_A Plasmid segregation protein PARM; plasmid partition, structural
protein; HET: GDP; 1.90A {Escherichia coli} SCOP:
c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A*
2zhc_A* 3iku_A 3iky_A
Length = 320
Score = 41.0 bits (95), Expect = 0.001
Identities = 11/86 (12%), Positives = 27/86 (31%), Gaps = 5/86 (5%)
Query: 240 VKGEMCRSEMEELCKDVFENVEKTLKDCLEKSKLALSDIHSVEIVGGSSRIPAIKGLIEK 299
+K + + + + L+ + + S V ++GG + + I ++K
Sbjct: 235 LKQRINDENKISIVTEAMNEALRKLEQRVLNTLNEFSGYTHVMVIGGGAEL--ICDAVKK 292
Query: 300 IFQKTPSTTLNQDE---AVARGCALQ 322
Q + + G L
Sbjct: 293 HTQIRDERFFKTNNSQYDLVNGMYLI 318
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization
EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A
{Carboxydothermus hydrogenoformans z-29organism_taxid}
Length = 272
Score = 39.5 bits (93), Expect = 0.002
Identities = 12/76 (15%), Positives = 27/76 (35%), Gaps = 4/76 (5%)
Query: 247 SEMEELCKDVFENVEKTLKDCLEKSKLALSDIHSVEIVGGSSRIPAIKGLIEKIFQKTPS 306
E+ + + V E + +K+ ++ V +VGG++ + + K
Sbjct: 200 REIMRVVRPVIEKMALIVKEVIK----NYDQTLPVYVVGGTAYLTGFSEEFSRFLGKEVQ 255
Query: 307 TTLNQDEAVARGCALQ 322
++ G AL
Sbjct: 256 VPIHPLLVTPLGIALF 271
>4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani}
Length = 329
Score = 39.7 bits (92), Expect = 0.003
Identities = 28/146 (19%), Positives = 49/146 (33%), Gaps = 8/146 (5%)
Query: 174 LGGRNIDYKLAKHFSQEFKQKYNIEPESNPRAFLRLLTEV-EKLKKQMSANSTKLPFGIE 232
GG N+ + L ++ +++ L+ V + L + N
Sbjct: 179 FGGLNMGFSLYRNCVVNPSERF-----IEEHGVKDLIIRVGDALTDLNNGNLITNEQAES 233
Query: 233 CFMNDIDVKGEMCRSEMEELCKDVFENVEKTLKDCLEKSKLALSDIHSVEIVGGSSRIPA 292
N KG +E + K V E K +EK L + S+ +GG+++
Sbjct: 234 ALNNGYMKKGGEIDTESSTVIKKVKEKFLKDAIKLIEKRGFKLDQLDSLIFIGGTTQK-- 291
Query: 293 IKGLIEKIFQKTPSTTLNQDEAVARG 318
+K I K + T N G
Sbjct: 292 LKEQISKTYPNNSIITNNSQWTTCEG 317
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 35.5 bits (81), Expect = 0.030
Identities = 24/153 (15%), Positives = 39/153 (25%), Gaps = 76/153 (49%)
Query: 601 ISKLDELKAIGEKIRQRKVDYEEKTKAFENIFCSIQIAQKKISMFKEGDERLNHLDAAEI 660
I++ D L E IR+ + EE+ +RL LDAA
Sbjct: 74 IAQADRLTQEPESIRKWR---EEQ------------------------RKRLQELDAAS- 105
Query: 661 TVVEEKVANALKWAENAQSLMNEFTDRTKDAPVPTSEIKNEMQNLNNAVNPVFSKPKPQP 720
+ +W E A+ + E+ R
Sbjct: 106 ---KVMEQ---EWREKAKKDLEEWNQRQS------------------------------- 128
Query: 721 KVEKKENGVQQNGETEEHMDDSSPKAETKAEPD 753
E+ E N ++ +PD
Sbjct: 129 --EQVEKNKINNRIADK---------AFYQQPD 150
Score = 29.0 bits (64), Expect = 4.1
Identities = 6/62 (9%), Positives = 19/62 (30%), Gaps = 6/62 (9%)
Query: 446 ENSGDTESMDVENTEEENGQKQEAGSE------NTENKAEKTQEGQSEDAEKKAAEAKKK 499
E + +D + E +++A + + EK + + +
Sbjct: 93 EQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDAD 152
Query: 500 VV 501
++
Sbjct: 153 II 154
Score = 27.8 bits (61), Expect = 9.2
Identities = 17/94 (18%), Positives = 32/94 (34%), Gaps = 25/94 (26%)
Query: 461 EENGQKQEAGSENTENKAEKTQEGQSED-AEKKAAEAKKKVVSKTLDLTISATTHGLSPE 519
+ + QE E K +E Q + E AA + + E
Sbjct: 76 QADRLTQE--PE----SIRKWREEQRKRLQELDAASKVMEQEWR---------------E 114
Query: 520 QLNAHTEL-EGKMIADDKLEKERIDARNCLEEYV 552
+ A +L E +++EK +I+ R + +
Sbjct: 115 K--AKKDLEEWNQRQSEQVEKNKINNRIADKAFY 146
>3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,,
transferase, structural genomics, PSI-2; 2.00A
{Bifidobacterium adolescentis ATCC15703}
Length = 515
Score = 36.2 bits (84), Expect = 0.044
Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 9/85 (10%)
Query: 241 KGEMCRSEMEELCKDVFENVEKTLKDCLEKSKLALSDIHSVEIVGGSSRIPAIKGLIEKI 300
+ + R+ E + + +DCLE + + I + ++GG ++ AI+ L I
Sbjct: 396 RENLARA--------FVEGLLCSQRDCLELIRSLGASITRILLIGGGAKSEAIRTLAPSI 447
Query: 301 FQKTPSTTLNQDEAVARGCALQCAM 325
T DE VA G A Q A
Sbjct: 448 LGM-DVTRPATDEYVAIGAARQAAW 471
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB:
3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A
1bpr_A 2bpr_A 1dg4_A
Length = 219
Score = 34.9 bits (81), Expect = 0.056
Identities = 30/129 (23%), Positives = 57/129 (44%), Gaps = 22/129 (17%)
Query: 496 AKKKVVSKTLDLTISATTHGLSPEQLNAHTELEGKMIAD-------DKLEKERIDARNCL 548
AK K K +TI A++ GL+ +++ KM+ D D+ +E + RN
Sbjct: 100 AKDKNSGKEQKITIKASS-GLNEDEIQ-------KMVRDAEANAEADRKFEELVQTRNQG 151
Query: 549 EEYVYDLRNKLGSEEEFALYIAADDASKLSTQLDETENWLYEEGADVNKSVYISKLDELK 608
+ ++ R ++ EE + ADD + + + L E L E + +K+ EL
Sbjct: 152 DHLLHSTRKQV---EEAGDKLPADDKTAIESALTALETALKGEDKAAIE----AKMQELA 204
Query: 609 AIGEKIRQR 617
+ +K+ +
Sbjct: 205 QVSQKLMEI 213
>2op6_A Heat shock 70 kDa protein D; HSP70/peptide-binding domain,
structural genomics, APC90014. 2, protein structure
initiative; 1.85A {Caenorhabditis elegans}
Length = 152
Score = 34.1 bits (79), Expect = 0.066
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 14/61 (22%)
Query: 496 AKKKVVSKTLDLTISATTHGLSPEQLNAHTELEGKMIAD-------DKLEKERIDARNCL 548
A+ K LTI+ + LSPE + +MI D D+ +KE++++RN L
Sbjct: 99 AEDKGTGNKNKLTITNDHNRLSPEDIE-------RMINDADKFAADDQAQKEKVESRNEL 151
Query: 549 E 549
E
Sbjct: 152 E 152
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 35.2 bits (81), Expect = 0.091
Identities = 42/230 (18%), Positives = 85/230 (36%), Gaps = 18/230 (7%)
Query: 476 NKAEKTQEGQSEDAEKKAAEAKKKVVSKTLDLTISATTHGLSPEQLNAHTELEGKMIADD 535
+ E+ Q E K + K + K L+ + + Q E E A++
Sbjct: 854 RQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEE 913
Query: 536 KLEKERIDARNCLEEYVYDLRNKLGSEEEFALYIAADDASKLSTQLDETENWLYEEGADV 595
+ + LEE ++++ ++ EEE + K+ Q+ + E
Sbjct: 914 MRVR-LAAKKQELEEILHEMEARIEEEEE-RSQQLQAEKKKMQQQMLDLEE--------- 962
Query: 596 NKSVYISKLDELKAIGEKIRQRKVDYEEKTKAFENIFCSIQIAQKKISMFKEGDERLNHL 655
+L+E +A +K++ KV + K K E+ ++ K++ ++ E
Sbjct: 963 -------QLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSD 1015
Query: 656 DAAEITVVEEKVANALKWAENAQSLMNEFTDRTKDAPVPTSEIKNEMQNL 705
+ EEK N K +S+++E R K E++ + L
Sbjct: 1016 LTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKL 1065
Score = 34.8 bits (80), Expect = 0.12
Identities = 37/198 (18%), Positives = 72/198 (36%), Gaps = 17/198 (8%)
Query: 438 AASMVEKVENSGDTESMDVENTEEENGQKQEAGSENTENKAEKTQEGQSEDAEKKAAEAK 497
+ +K++ T ++ E++ ++ ++ T+ + + E K
Sbjct: 967 EEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEK 1026
Query: 498 KKVVSKT---LDLTISATTHGLSPEQLNAHTELEGKMIADDKLEKERIDARNC---LEEY 551
K ++K + IS L E+ + ELE KLE E D L+
Sbjct: 1027 AKNLTKLKNKHESMISELEVRLKKEE-KSRQELEKIK---RKLEGESSDLHEQIAELQAQ 1082
Query: 552 VYDLRNKLGS--EEEFALYIAADDASKLSTQLDETENWLYEEGADVNKSVYISKLDELKA 609
+ +L+ +L EE A +D + + L +D+ L+ KA
Sbjct: 1083 IAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQ-----EDLESEKA 1137
Query: 610 IGEKIRQRKVDYEEKTKA 627
K ++K D E+ +A
Sbjct: 1138 ARNKAEKQKRDLSEELEA 1155
Score = 34.0 bits (78), Expect = 0.20
Identities = 37/235 (15%), Positives = 81/235 (34%), Gaps = 21/235 (8%)
Query: 460 EEENGQKQEAGSENTENKAEKTQEGQSEDAEKKAAEAKKKVVSKTLDLTISATTHGLSPE 519
+ E + Q+ + E E+ Q EK A+ K K + + + L+ E
Sbjct: 947 QAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNK-LTKE 1005
Query: 520 QLN---AHTELEGKMIADDKLEKERIDARNCLEEYVYDLRNKLGSEEEFALYIAADDASK 576
+ ++L + +++ K +N E + +L +L EE+ + + K
Sbjct: 1006 RKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEK-----SRQELEK 1060
Query: 577 LSTQLDETENWLYEEGADVNKSVYISKLDELKAIGEKIRQRKVDYEEKTKAFENIFCSIQ 636
+ +L E E+ E ++ +L E+++ E++T N I+
Sbjct: 1061 IKRKL-EGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIR 1119
Query: 637 IAQKKISMFKEGDERLNHLDAAEITVVEEKVANALKWAENAQSLMNEFTDRTKDA 691
+ IS +E ++ + A K + + +D
Sbjct: 1120 ELESHISDLQE-----------DLESEKAARNKAEKQKRDLSEELEALKTELEDT 1163
>3h0x_A 78 kDa glucose-regulated protein homolog; structural genomics,
APC89502.3, peptide binding, chaperone, BIP, PSI-2;
1.92A {Saccharomyces cerevisiae} PDB: 1ckr_A 7hsc_A
Length = 152
Score = 32.6 bits (75), Expect = 0.19
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 496 AKKKVVSKTLDLTISATTHGLSPEQLNAHTELEGKMIADDKLEKERIDARNCLE 549
A K K+ +TI+ L+ E+++ E K ++D K ++++RN LE
Sbjct: 99 ATDKGTGKSESITITNDKGRLTQEEIDRMVEEAEKFASEDASIKAKVESRNKLE 152
>3n8e_A Stress-70 protein, mitochondrial; beta-sandwich, helix, substrate
binding domain, structural G consortium, SGC, chaperone;
2.80A {Homo sapiens}
Length = 182
Score = 33.0 bits (76), Expect = 0.21
Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 15/71 (21%)
Query: 496 AKKKVVSKTLDLTISATTHGLSPEQLNAHTELEGKMIAD-------DKLEKERIDARNCL 548
AK K + + I ++ GLS + + M+ + D+ +KER++A N
Sbjct: 119 AKDKGTGREQQIVIQSSG-GLSKDDIE-------NMVKNAEKYAEEDRRKKERVEAVNMA 170
Query: 549 EEYVYDLRNKL 559
E ++D K+
Sbjct: 171 EGIIHDTETKM 181
>3dob_A Heat shock 70 kDa protein F44E5.5; structural genomics,
APC90015.11, peptide-binding domain, HS 2, protein
structure initiative; 2.39A {Caenorhabditis elegans}
Length = 152
Score = 32.6 bits (75), Expect = 0.21
Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 14/61 (22%)
Query: 496 AKKKVVSKTLDLTISATTHGLSPEQLNAHTELEGKMIAD-------DKLEKERIDARNCL 548
A+ K K+ +TI L+ ++ +M+ + D ++ER+ ARN L
Sbjct: 99 AEDKSTGKSNRITIQNEKGRLTQSDID-------RMVHEAKQFEKEDGEQRERVQARNQL 151
Query: 549 E 549
E
Sbjct: 152 E 152
>2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase;
HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A
Length = 484
Score = 33.0 bits (76), Expect = 0.44
Identities = 16/87 (18%), Positives = 32/87 (36%), Gaps = 9/87 (10%)
Query: 241 KGEMCRSEMEELCKDVFENVEKTLKDCLEKSKLALSDIHSVEIVGGSSRIPAIKGLIEKI 300
E+ R+ +E + + L D ++ SV ++GG +R + ++ I
Sbjct: 358 PNELARAVLEGVG---YA-----LADGMDVVHACGIKPQSVTLIGGGARSEYWRQMLADI 409
Query: 301 FQKTPSTTLNQDEAVARGCALQCAMLS 327
+ D A G A A ++
Sbjct: 410 SGQQLDYRTGGDVGPALGAARL-AQIA 435
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion;
HET: ATP; 2.20A {Thermus thermophilus}
Length = 377
Score = 32.5 bits (74), Expect = 0.57
Identities = 14/120 (11%), Positives = 42/120 (35%), Gaps = 14/120 (11%)
Query: 185 KHFSQEFKQKYNIEPESNPRAFLRLLTEVEKLKKQMSANSTKLPFGIECFMNDIDVKGEM 244
K F++ + +N++ E++K+ + ++ +
Sbjct: 224 KDFTEAIARSFNLDLL-----------AAEEVKRTYGMATLPTEDEEL-LLDFDAERERY 271
Query: 245 CRSEMEELCKDVFENVEKTLKDCLE--KSKLALSDIHSVEIVGGSSRIPAIKGLIEKIFQ 302
+ + + V + + L+ LE + +L + ++GG S++ + L+
Sbjct: 272 SPGRIYDAIRPVLVELTQELRRSLEFFRIQLEEASPEVGYLLGGGSKLRGLASLLTDTLG 331
>2zjr_S 50S ribosomal protein L25; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: b.53.1.1 PDB: 1njm_T* 1nwx_T* 1njp_T*
1xbp_T* 2zjp_S* 2zjq_S 1nwy_T 3cf5_S* 3dll_S* 3pio_S*
3pip_S* 1nkw_T 1sm1_T* 1yl3_V 2b66_Z 2b9n_Z 2b9p_Z
1pnu_T 1pny_T 1vor_W ...
Length = 237
Score = 31.6 bits (72), Expect = 0.75
Identities = 11/76 (14%), Positives = 22/76 (28%), Gaps = 8/76 (10%)
Query: 424 VKVRVNMDGVIGVIAASMVEKVENSGDTESMDVENTEEENGQKQEAGSENTENKAEKTQE 483
+ + + + + + E + A E +E AE E
Sbjct: 158 CTLAADPELTVVSVLPPRLTAEE--------LEAEVQAAQVAGLVAAGELSEEAAEAVLE 209
Query: 484 GQSEDAEKKAAEAKKK 499
G + E KA ++
Sbjct: 210 GDASLEEVKAEASEDN 225
>3fak_A Esterase/lipase, ESTE5; HSL, hydrolase; 1.90A {Uncultured
bacterium} PDB: 3g9t_A 3g9u_A 3g9z_A 3h17_A* 3h18_A*
3h19_A 3h1a_A 3h1b_A 3l1h_A 3l1i_A 3l1j_A 3v9a_A
Length = 322
Score = 31.5 bits (72), Expect = 0.90
Identities = 16/61 (26%), Positives = 21/61 (34%), Gaps = 6/61 (9%)
Query: 121 TAMLLTKLRETSE--IALQCNIS---DCVLSVPSFYTNAERKALLDAAKIIASAANPYLG 175
+L R+ A IS D + SF T AE ++ I A YL
Sbjct: 163 VLAVLVSARDQGLPMPASAIPISPWADMTCTNDSFKTRAEADPMVAPG-GINKMAARYLN 221
Query: 176 G 176
G
Sbjct: 222 G 222
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A
{Geobacillus kaustophilus}
Length = 213
Score = 31.2 bits (71), Expect = 0.91
Identities = 10/62 (16%), Positives = 22/62 (35%)
Query: 440 SMVEKVENSGDTESMDVENTEEENGQKQEAGSENTENKAEKTQEGQSEDAEKKAAEAKKK 499
+ E+ + ES V E + E + + + Q + E K +E + +
Sbjct: 22 PIEEEAAPQPEEESGGVPLEEAGGEEAAEPAEKAPTAEELAAAKAQIAELEAKLSEMEHR 81
Query: 500 VV 501
+
Sbjct: 82 YL 83
>3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural GENO
11200H, transferase, PSI-2; 2.30A {Rhodospirillum
rubrum}
Length = 508
Score = 31.0 bits (71), Expect = 1.5
Identities = 13/87 (14%), Positives = 26/87 (29%), Gaps = 10/87 (11%)
Query: 241 KGEMCRSEMEELCKDVFENVEKTLKDCLEKSKLALSDIHSVEIVGGSSRIPAIKGLIEKI 300
+G + R+ +E + + + G +R G++ +
Sbjct: 372 RGHLWRALLEAVA---LA-----FRHHVAVLDDIGHAPQRFFASDGGTRSRVWMGIMADV 423
Query: 301 FQKTPSTTLNQDEAVARGCALQCAMLS 327
Q+ P L A G A A +
Sbjct: 424 LQR-PVQLLANPLGSAVGAAW-VAAIG 448
>3k6k_A Esterase/lipase; alpha/beta hydrolase fold; 2.20A {Uncultured
bacterium} PDB: 3dnm_A
Length = 322
Score = 30.7 bits (70), Expect = 1.9
Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 6/61 (9%)
Query: 121 TAMLLTKLRETSE--IALQCNIS---DCVLSVPSFYTNAERKALLDAAKIIASAANPYLG 175
T + K +E A +S D LS S A+R L + + + Y+G
Sbjct: 163 TTASMLKAKEDGLPMPAGLVMLSPFVDLTLSRWSNSNLADRDFLAEPD-TLGEMSELYVG 221
Query: 176 G 176
G
Sbjct: 222 G 222
>3dqg_A Heat shock 70 kDa protein F; structural genomics, APC90008.12,
HSP70 protein, peptide-BIN domain, PSI-2, protein
structure initiative; 1.72A {Caenorhabditis elegans}
Length = 151
Score = 28.8 bits (65), Expect = 4.0
Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 15/58 (25%)
Query: 496 AKKKVVSKTLDLTISATTHGLSPEQLNAHTELEGKMIAD-------DKLEKERIDARN 546
A+ + K + I ++ GLS +Q+ MI + D KE ++ N
Sbjct: 99 ARDRGTGKEQQIVIQSSG-GLSKDQIE-------NMIKEAEKNAAEDAKRKELVEVIN 148
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 5.3
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 6/35 (17%)
Query: 723 EKKENGVQQ-NGETEEHMDDSSPKAETKAEPDTKE 756
EK+ +++ + + DDS+P KA T E
Sbjct: 18 EKQA--LKKLQASLKLYADDSAPALAIKA---TME 47
Score = 27.6 bits (60), Expect = 9.8
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 10/32 (31%)
Query: 189 QEFKQ-----K-YNIEPESNPRAFLRLLTEVE 214
Q K+ K Y +S P A L + +E
Sbjct: 20 QALKKLQASLKLY--ADDSAP-A-LAIKATME 47
>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class
I, activator, RNA polymeras holoenzyme, sigma70, open
complex, CAP, CRP; HET: DNA CMP; 19.80A {Escherichia
coli k-12}
Length = 613
Score = 29.2 bits (65), Expect = 5.7
Identities = 32/335 (9%), Positives = 93/335 (27%), Gaps = 30/335 (8%)
Query: 429 NMDGVIGVIAASMVEKVENSGDTESMDVENTEEENGQKQEAGSENTENKAEKTQEGQSED 488
++ +I +I ++ +E + D + + + + + A + + +++ G++ D
Sbjct: 40 QIEDIIQMINDMGIQVMEEAPDADDLMLAENTAD---EDAAEAAAQVLSSVESEIGRTTD 96
Query: 489 ----------------AEKKAAEAKKKVVSKTLDLTISATTHGLSPEQLNAHTELEGKMI 532
E + AK+ A L + +E +
Sbjct: 97 PVRMYMREMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYNRVEAEEA 156
Query: 533 ADDKLEKERIDARNCLEEYVYDLRNKLGSEEEFALYIAADDASKLSTQLDETENWLYEEG 592
L +D + +E +D + +N + E
Sbjct: 157 RLSDLITGFVDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPEL 216
Query: 593 ADVNKSVYISKLDELKAIGEKIRQRKVDYEEKTKAFENIFCSIQIAQKKISMF------- 645
A + ++ + + + +E+ +F ++ K+
Sbjct: 217 AREKFAELRAQYVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVM 276
Query: 646 ----KEGDERLNHLDAAEITVVEEKVANALKWAENAQSLMNEFTDRTKDAPVPTSEIKNE 701
+ + + L + + ++ E + + N K ++ E
Sbjct: 277 MDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEE 336
Query: 702 MQNLNNAVNPVFSKPKPQPKVEKKENGVQQNGETE 736
+ + + + + K N GE +
Sbjct: 337 VHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAK 371
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled,
acetylation, alternative splic apoptosis, coiled coil,
cytoplasm; 2.80A {Homo sapiens}
Length = 65
Score = 26.6 bits (58), Expect = 6.3
Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 614 IRQRKVD-YEEKTKAFENIFCSIQIAQKKISMFKEGDERLNHLDAAEITVVEEKVA 668
++++ + E K + FENI + + + + LD I +E++V
Sbjct: 3 MKEKLLAELEGKLRVFENIVAVLNKEVEASHLALATSIHQSQLDRERILSLEQRVV 58
>3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose,
transferase, structural genomics, PSI-2, protein
structure initiative; HET: ATP DXP XUL ADP; 2.00A
{Lactobacillus acidophilus} PDB: 3gbt_A*
Length = 504
Score = 29.1 bits (66), Expect = 6.4
Identities = 15/81 (18%), Positives = 27/81 (33%), Gaps = 9/81 (11%)
Query: 241 KGEMCRSEMEELCKDVFENVEKTLKDCLEKSKLALSDIHSVEIVGGSSRIPAIKGLIEKI 300
K EM R+ +E + F L D ++ GG + ++ L I
Sbjct: 365 KPEMARAVIEGII---FN-----LYDAASNLIKNTKKPVAINATGGFLKSDFVRQLCANI 416
Query: 301 FQKTPSTTLNQDEAVARGCAL 321
F P T+ + ++
Sbjct: 417 FNV-PIVTMKEQQSGTLAAMF 436
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 29.3 bits (66), Expect = 6.9
Identities = 20/176 (11%), Positives = 64/176 (36%), Gaps = 20/176 (11%)
Query: 460 EEENGQKQEAGSENTENKAEKTQ-------------EGQSEDAEKKAAEAKKKVVSKTLD 506
E + ++ + ENK + Q + + E + +K+ S
Sbjct: 912 EARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVER 971
Query: 507 LTISATTHGLSPEQLNAHTELEGKMIADDKLEKERIDARNCLEEYVYDLRNKLGSEEEFA 566
L +S + ++ L+ ++ K + + +EE+ +++
Sbjct: 972 LRMSEEEAKNATNRVL---SLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSE- 1027
Query: 567 LYIAADDASKLSTQLDETENWLYEEGADVNKSVYISKLDELKAIGEKIRQRKVDYE 622
+ + L T+ +E ++++ ++ +++ ++E K + + ++ Y+
Sbjct: 1028 ---LKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDERLRYQ 1080
>3c5p_A Protein BAS0735 of unknown function; 2-layer beta-sheet, structural
genomics, PSI-2, protein STRU initiative; 2.90A
{Bacillus anthracis str}
Length = 197
Score = 28.3 bits (62), Expect = 8.4
Identities = 23/127 (18%), Positives = 40/127 (31%), Gaps = 25/127 (19%)
Query: 89 FLPYNVSENPDGSIGIKVKYLNED-RVFTPEQITAM---------------LLTKLRETS 132
F+P + +E +V D R FTP + M + T
Sbjct: 15 FIPMSWTEAKMDMETGQVIQFEGDSREFTPHAVNTMRSRVEQEVVVDFYKQEVFSYANTG 74
Query: 133 EIALQCNISDCVLSVPSFYTNAERKALLDAA--------KIIASAANPY-LGGRNIDYKL 183
+ D ++ + + E D K+ ASA+NP + +DY L
Sbjct: 75 ITTEKVISPDGSVNKRTGKASTENIVCTDIVWNSGGVQFKMSASASNPLNVYAPPVDYVL 134
Query: 184 AKHFSQE 190
++
Sbjct: 135 NVCVKKD 141
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type
2 promoters, transcription, hypothetica protein,
preinitiation complex, yeast RNA polymerase III; 3.2A
{Saccharomyces cerevisiae}
Length = 588
Score = 28.6 bits (63), Expect = 9.3
Identities = 10/37 (27%), Positives = 15/37 (40%)
Query: 669 NALKWAENAQSLMNEFTDRTKDAPVPTSEIKNEMQNL 705
N L WA + + F D + P +I +NL
Sbjct: 19 NNLTWARDGTLYLTTFPDISIGQPKYAKDINCNSKNL 55
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.311 0.128 0.356
Gapped
Lambda K H
0.267 0.0439 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,230,336
Number of extensions: 693976
Number of successful extensions: 1427
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1371
Number of HSP's successfully gapped: 100
Length of query: 763
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 662
Effective length of database: 3,881,772
Effective search space: 2569733064
Effective search space used: 2569733064
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (28.0 bits)