RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy740
(763 letters)
>d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase
fragment {Cow (Bos taurus) [TaxId: 9913]}
Length = 185
Score = 160 bits (406), Expect = 4e-46
Identities = 63/160 (39%), Positives = 100/160 (62%), Gaps = 1/160 (0%)
Query: 6 VIGIDFGNESCFIAAARAGGIETIANDYSLRATPSCVAFSDRNRILGVAAKNQTVTNMKN 65
+GID G+ + + G +E IAND R TPS VAF+D R++G AAKNQ N N
Sbjct: 3 AVGIDLGSTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTN 62
Query: 66 TIHGFKRLIGREFKDPHVQDELKFLPYNVSENPDGSIGIKVKYLNEDRVFTPEQITAMLL 125
T+ KRLIGR F D VQ ++K P+ V + G ++V+Y E + F PE++++M+L
Sbjct: 63 TVFDAKRLIGRRFDDAVVQSDMKHWPFMVVND-AGRPKVQVEYKGETKSFYPEEVSSMVL 121
Query: 126 TKLRETSEIALQCNISDCVLSVPSFYTNAERKALLDAAKI 165
TK++E +E L +++ V++VP+++ +++R+A DA I
Sbjct: 122 TKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTI 161
>d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase
fragment {Escherichia coli, gene dnaK [TaxId: 562]}
Length = 183
Score = 157 bits (397), Expect = 7e-45
Identities = 54/161 (33%), Positives = 91/161 (56%), Gaps = 5/161 (3%)
Query: 6 VIGIDFGNESCFIAAARAGGIETIANDYSLRATPSCVAFSDRNRIL-GVAAKNQTVTNMK 64
+IGID G + +A + N R TPS +A++ L G AK Q VTN +
Sbjct: 2 IIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQ 61
Query: 65 NTIHGFKRLIGREFKDPHVQDELKFLPYNVSENPDGSIGIKVKYLNEDRVFTPEQITAML 124
NT+ KRLIGR F+D VQ ++ +P+ + +G ++VK + P QI+A +
Sbjct: 62 NTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVK----GQKMAPPQISAEV 117
Query: 125 LTKLRETSEIALQCNISDCVLSVPSFYTNAERKALLDAAKI 165
L K+++T+E L +++ V++VP+++ +A+R+A DA +I
Sbjct: 118 LKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRI 158
>d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase
fragment {Escherichia coli, gene dnaK [TaxId: 562]}
Length = 198
Score = 155 bits (393), Expect = 4e-44
Identities = 50/167 (29%), Positives = 92/167 (55%), Gaps = 3/167 (1%)
Query: 164 KIIASAANPYLGGRNIDYKLAKHFSQEFKQKYNIEPESNPRAFLRLLTEVEKLKKQMSAN 223
+++A+ + +LGG + D +L + +EFK+ I+ ++P A RL EK K ++S+
Sbjct: 32 EVLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSA 91
Query: 224 ST---KLPFGIECFMNDIDVKGEMCRSEMEELCKDVFENVEKTLKDCLEKSKLALSDIHS 280
LP+ + ++ R+++E L +D+ + LK L+ + L++SDI
Sbjct: 92 QQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIELLKVALQDAGLSVSDIDD 151
Query: 281 VEIVGGSSRIPAIKGLIEKIFQKTPSTTLNQDEAVARGCALQCAMLS 327
V +VGG +R+P ++ + + F K P +N DEAVA G A+Q +L+
Sbjct: 152 VILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVLT 198
>d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase
fragment {Cow (Bos taurus) [TaxId: 9913]}
Length = 193
Score = 145 bits (367), Expect = 1e-40
Identities = 60/165 (36%), Positives = 95/165 (57%), Gaps = 2/165 (1%)
Query: 164 KIIASAANPYLGGRNIDYKLAKHFSQEFKQKYNIEPESNPRAFLRLLTEVEKLKKQMSAN 223
++ ++A + +LGG + D ++ HF EFK+K+ + N RA RL T E+ K+ +S +
Sbjct: 30 EVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLS-S 88
Query: 224 STKLPFGIECFMNDIDVKGEMCRSEMEELCKDVFENVEKTLKDCLEKSKLALSDIHSVEI 283
ST+ I+ ID + R+ EEL D+F ++ L +KL S IH + +
Sbjct: 89 STQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVL 148
Query: 284 VGGSSRIPAIKGLIEKIF-QKTPSTTLNQDEAVARGCALQCAMLS 327
VGGS+RIP I+ L++ F K + ++N DEAVA G A+Q A+LS
Sbjct: 149 VGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILS 193
>d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB
{Thermotoga maritima [TaxId: 2336]}
Length = 196
Score = 64.9 bits (157), Expect = 1e-12
Identities = 21/167 (12%), Positives = 60/167 (35%), Gaps = 10/167 (5%)
Query: 158 ALLDAAKIIASAANPYLGGRNIDYKLAKHFSQEFKQKYNIEPESNPRAFLRLLTEVEKLK 217
A++ I+ + + G +D + ++ + ++ + + + ++
Sbjct: 22 AVISLGSIVTWESIR-IAGDEMDEAIVQYVRETYRVAIGERTAERVKIEIGNVFPSKEND 80
Query: 218 KQMSANSTKLPFGIECFMNDIDVKGEMCRSEMEELCKDVFENVEKTLKDCLEKSKLALS- 276
+ + + K + E+ E + V + ++++ LEK+ L
Sbjct: 81 ELET------TVSGIDLSTGLPRKLTLKGGEVREALRSVVVAIVESVRTTLEKTPPELVS 134
Query: 277 --DIHSVEIVGGSSRIPAIKGLIEKIFQKTPSTTLNQDEAVARGCAL 321
+ + GG S + + L++K + + AVA+G +
Sbjct: 135 DIIERGIFLTGGGSLLRGLDTLLQKETGISVIRSEEPLTAVAKGAGM 181
>d1ud0a_ a.8.4.1 (A:) DnaK {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 84
Score = 57.9 bits (140), Expect = 3e-11
Identities = 14/74 (18%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Query: 544 ARNCLEEYVYDLRNKLGSEEEFALYIAADDASKLSTQLDETENWLYEEGADVNKSVYISK 603
+ LE Y ++++ + +E+ I +D K+ + +E +WL ++ K + +
Sbjct: 2 GSHMLESYAFNMKATV-EDEKLQGKINDEDKQKILDKCNEIISWL-DKNQTAEKEEFEHQ 59
Query: 604 LDELKAIGEKIRQR 617
EL+ + I +
Sbjct: 60 QKELEKVCNPIITK 73
>d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB
{Thermotoga maritima [TaxId: 2336]}
Length = 137
Score = 42.8 bits (100), Expect = 2e-05
Identities = 24/161 (14%), Positives = 42/161 (26%), Gaps = 48/161 (29%)
Query: 7 IGIDFGNESCFIAAARAGGIETIANDYSLRATPSCVAF--SDRNRILGVAAKNQTVTNMK 64
IGID G + + G + PS +A + + +
Sbjct: 3 IGIDLGTANTLVFLRGKGIVVNE---------PSVIAIDSTTGEILKVGLEAKNMIGKTP 53
Query: 65 NTIHGFKRLIGREFKDPHVQDELKFLPYNVSENPDGSIGIKVKYLNEDRVFTPEQITAML 124
TI + D V + ++
Sbjct: 54 ATIKAIRP-------------------------------------MRDGVIADYTVALVM 76
Query: 125 LTKLRETSEIALQCNISDCVLSVPSFYTNAERKALLDAAKI 165
L ++ + V+ VP T+ ER+A+LDA
Sbjct: 77 LRYFINKAKGGMNLFKPRVVIGVPIGITDVERRAILDAGLE 117
>d1dkza1 a.8.4.1 (A:507-603) DnaK {Escherichia coli [TaxId: 562]}
Length = 97
Score = 35.1 bits (81), Expect = 0.005
Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 7/82 (8%)
Query: 533 ADDKLEKERIDARNCLEEYVYDLRNKLGSEEEFALYIAADDASKLSTQLDETENWLYEEG 592
D+ +E + RN + ++ R ++ EE + ADD + + + L E L E
Sbjct: 18 EADRKFEELVQTRNQGDHLLHSTRKQV---EEAGDKLPADDKTAIESALTALETALKGE- 73
Query: 593 ADVNKSVYISKLDELKAIGEKI 614
+K+ +K+ EL + +K+
Sbjct: 74 ---DKAAIEAKMQELAQVSQKL 92
>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain
{Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 500
Score = 33.4 bits (76), Expect = 0.12
Identities = 22/194 (11%), Positives = 59/194 (30%), Gaps = 31/194 (15%)
Query: 178 NIDYKLAKHFSQEFKQKYNIEPESNPRAFLRLLTEVEKLKKQMSANSTKL-PFGIECFMN 236
L F + + N + AF ++TE + + + GI+ ++N
Sbjct: 230 EGSSTLNLAFVAQIFHERNGLNKDGKYAFAEMMTEDVETCRDERCYRLWINSLGIDSYVN 289
Query: 237 DIDV---KGEMCRSEMEELCKDVF-----------------ENVEKTLKDCLEKSKLALS 276
++ G + ++++ EN + + ++ K +L
Sbjct: 290 NVFEDVRNGWILLEVLDKVSPSSVNWKHASKPPIKMPFRKVENCNQVI-KIGKQLKFSLV 348
Query: 277 DIHSVEIVGGSSR-IPAIKGLIEKIFQ--------KTPSTTLNQDEAVARGCALQCAMLS 327
++ +IV G+ + I + + + D + + +
Sbjct: 349 NVAGNDIVQGNKKLILGLLWQLMRFHMLQLLKSLRSRTLGKEMTDADILSWANRKVRTMG 408
Query: 328 PAVRVRDFSVTDLQ 341
+++ F L
Sbjct: 409 RKLQIESFKDKSLS 422
>d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A
{Acidaminococcus fermentans [TaxId: 905]}
Length = 259
Score = 30.6 bits (68), Expect = 0.56
Identities = 11/74 (14%), Positives = 28/74 (37%), Gaps = 4/74 (5%)
Query: 248 EMEELCKDVFENVEKTLKDCLEKSKLALSDIHSVEIVGGSSRIPAIKGLIEKIFQKTPST 307
+ ++ + +V + + + + V + GG ++ ++G +E+ T
Sbjct: 182 DKIDIIAGIHRSVASRVIGLANR----VGIVKDVVMTGGVAQNYGVRGALEEGLGVEIKT 237
Query: 308 TLNQDEAVARGCAL 321
+ A G AL
Sbjct: 238 SPLAQYNGALGAAL 251
>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain
{Fission yeast (Schizosaccharomyces pombe) [TaxId:
4896]}
Length = 505
Score = 29.6 bits (66), Expect = 1.5
Identities = 12/94 (12%), Positives = 25/94 (26%), Gaps = 8/94 (8%)
Query: 255 DVFENVEKTLKDCLEKSKLALSDIHSVEIVGGSSRIPAI-------KGLIEKIFQKTPST 307
EN + D + +L I +I GS + + + + +
Sbjct: 339 KAVENCNYAV-DLGKNQGFSLVGIQGADITDGSRTLTLALVWQMMRMNITKTLHSLSRGG 397
Query: 308 TLNQDEAVARGCALQCAMLSPAVRVRDFSVTDLQ 341
D + A ++R F +
Sbjct: 398 KTLSDSDMVAWANSMAAKGGKGSQIRSFRDPSIS 431
>d1u5ta1 a.4.5.54 (A:20-164) Vacuolar sorting protein SNF8 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 145
Score = 28.5 bits (64), Expect = 1.6
Identities = 24/114 (21%), Positives = 47/114 (41%), Gaps = 19/114 (16%)
Query: 189 QEFKQKYNIEPESNP--RA-FLRLLTE--VEKLKKQMSANSTKLPFGIECFMNDIDVK-G 242
EF +K+N E +++P R+ F+ + + ++ L + K F + F ++ +K
Sbjct: 25 VEFAKKHNSELQASPEFRSKFMHMCSSIGIDPL---SLFDRDKHLFTVNDFYYEVCLKVI 81
Query: 243 EMCRS---------EMEELCKDVFENVEKTLKDCLEK-SKLALSDIHSVEIVGG 286
E+CR +EL K F + L D + L + + + G
Sbjct: 82 EICRQTKDMNGGVISFQELEKVHFRKLNVGLDDLEKSIDMLKSLECFEIFQIRG 135
>d1yuwa1 b.130.1.1 (A:385-543) DnaK {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 159
Score = 28.4 bits (63), Expect = 2.0
Identities = 11/43 (25%), Positives = 24/43 (55%)
Query: 507 LTISATTHGLSPEQLNAHTELEGKMIADDKLEKERIDARNCLE 549
+TI+ LS E + + K A+D+ +++++ ++N LE
Sbjct: 117 ITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLE 159
>d3bzka1 a.60.2.6 (A:474-563) Transcriptional accessory factor Tex
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 90
Score = 27.0 bits (60), Expect = 2.8
Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 573 DASKLSTQLDET-ENWLYEEGADVNKSVYISKLDELKAIGEKIRQRKVDYEEKTKAFENI 631
KL+ LD E+ + G DVN + + L + + + Q V + + AF
Sbjct: 6 SQLKLARSLDAVVEDCVNAVGVDVNTAS-AALLARISGLNSTLAQNIVAHRDANGAFRTR 64
>d1xkga1 d.3.1.1 (A:4-305) Major mite fecal allergen der p 1
{House-dust mite (Dermatophagoides pteronyssinus)
[TaxId: 6956]}
Length = 302
Score = 27.7 bits (60), Expect = 4.9
Identities = 13/72 (18%), Positives = 25/72 (34%), Gaps = 10/72 (13%)
Query: 669 NALKWAENAQSLMNEFTDRTKDAPVPTSEIKNEMQNLNNAVNPVFSKPKPQPKVEKKENG 728
++K+ ++ +N +D + D E +N F K Q + + N
Sbjct: 31 ESVKYVQSNGGAINHLSDLSLD----------EFKNRFLMSAEAFEHLKTQFDLNAETNA 80
Query: 729 VQQNGETEEHMD 740
NG +D
Sbjct: 81 CSINGNAPAEID 92
>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 variant 1 [TaxId: 9606]}
Length = 139
Score = 26.9 bits (59), Expect = 5.6
Identities = 11/57 (19%), Positives = 20/57 (35%), Gaps = 1/57 (1%)
Query: 203 PRAFLRLLTEVEKLKKQMSANSTKLPFGIECFMNDIDVKGEMCRSEMEELCKDVFEN 259
PR F RLL E+E+ +K + + + M G + ++
Sbjct: 5 PRNF-RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSL 60
>d1eysc_ a.138.1.2 (C:) Photosynthetic reaction centre (cytochrome
subunit) {Thermochromatium tepidum [TaxId: 1050]}
Length = 310
Score = 27.6 bits (61), Expect = 6.2
Identities = 19/92 (20%), Positives = 34/92 (36%), Gaps = 17/92 (18%)
Query: 472 ENTENKAEKTQEGQSEDAE-------KKAAEAKKKVVSKTLDLTIS-------ATTHGLS 517
+A Q Q ++ KA+E + V DL++ A T +S
Sbjct: 22 YVKRQRALSIQANQPVESLPAADSTGPKASEVYQSVQVLK-DLSVGEFTRTMVAVTTWVS 80
Query: 518 PEQLNAHTELEGKMIADDKLEKERIDARNCLE 549
P++ + + G +DD K + +R E
Sbjct: 81 PKEGCNYCHVPGNWASDDIYTK--VVSRRMFE 110
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.311 0.128 0.356
Gapped
Lambda K H
0.267 0.0623 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,684,314
Number of extensions: 127618
Number of successful extensions: 331
Number of sequences better than 10.0: 1
Number of HSP's gapped: 323
Number of HSP's successfully gapped: 25
Length of query: 763
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 671
Effective length of database: 1,144,436
Effective search space: 767916556
Effective search space used: 767916556
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 57 (26.0 bits)