BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7403
(368 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ET6|B Chain B, The Crystal Structure Of The Catalytic Domain Of A
Eukaryotic Guanylate Cyclase
Length = 190
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%)
Query: 183 YQGPCVAGVVGLKMPRYCLFGDTVNTASRMESNGQALKIHVSPFTKEVLDTFGTFDLELR 242
+ GP VAGVVG KMPR+ LFGDTVNTASRMES+G+A +IH+S L + F++ R
Sbjct: 109 HSGPVVAGVVGRKMPRFXLFGDTVNTASRMESHGEAGQIHISEACYXCLRSKERFEIRER 168
Query: 243 GEVEMKVETIGDAYMV 258
G + +K + Y++
Sbjct: 169 GNITVKGKGTMRTYLL 184
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 39/56 (69%), Gaps = 1/56 (1%)
Query: 11 SVVAETYDSVTIYFSDIVGFTSLSAESTPLQVVELLNDLYTCFDSVIENF-DVYKV 65
S A+ + T+ FSDIVGFT +++ S+PL+V LL++LY FD+ IE + +YKV
Sbjct: 1 SAPAQEHPEATVLFSDIVGFTEIASRSSPLEVXSLLDELYQRFDAAIEEYPQLYKV 56
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 330 SVVAETYDSVTIYFSDIVGFTSLSAESTP 358
S A+ + T+ FSDIVGFT +++ S+P
Sbjct: 1 SAPAQEHPEATVLFSDIVGFTEIASRSSP 29
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 248 KVETIGDAYMVVSGLPMRNGNLHAREIARMSLALLDTVVTFTIRHRPTDQLKLRIGMHTG 307
KVETIGDAYMVV + + + HA + +L + + + + +++R+GMH+G
Sbjct: 55 KVETIGDAYMVVCNVTVPCDD-HADVLLEFALRMHEEAS--RVASSLGEPVRIRVGMHSG 111
>pdb|3ET6|A Chain A, The Crystal Structure Of The Catalytic Domain Of A
Eukaryotic Guanylate Cyclase
Length = 190
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 51/76 (67%)
Query: 183 YQGPCVAGVVGLKMPRYCLFGDTVNTASRMESNGQALKIHVSPFTKEVLDTFGTFDLELR 242
+ GP VAGVVG KMPR+ LFGDTVNTASRMES+G+A +IH+S L + F++ R
Sbjct: 109 HSGPVVAGVVGRKMPRFXLFGDTVNTASRMESHGEAGQIHISEACYCCLRSKERFEIRER 168
Query: 243 GEVEMKVETIGDAYMV 258
G + +K + Y++
Sbjct: 169 GNITVKGKGTMRTYLL 184
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 39/56 (69%), Gaps = 1/56 (1%)
Query: 11 SVVAETYDSVTIYFSDIVGFTSLSAESTPLQVVELLNDLYTCFDSVIENF-DVYKV 65
S A+ + T+ FSDIVGFT +++ S+PL+V LL++LY FD+ IE + +YKV
Sbjct: 1 SAPAQEHPEATVLFSDIVGFTEIASRSSPLEVXSLLDELYQRFDAAIEEYPQLYKV 56
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 330 SVVAETYDSVTIYFSDIVGFTSLSAESTP 358
S A+ + T+ FSDIVGFT +++ S+P
Sbjct: 1 SAPAQEHPEATVLFSDIVGFTEIASRSSP 29
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 248 KVETIGDAYMVVSGLPMRNGNLHAREIARMSLALLDTVVTFTIRHRPTDQLKLRIGMHTG 307
KVETIGDAYMVV + + + HA + +L + + + + +++R+GMH+G
Sbjct: 55 KVETIGDAYMVVCNVTVPCDD-HADVLLEFALRMHEEAS--RVASSLGEPVRIRVGMHSG 111
>pdb|2WZ1|A Chain A, Structure Of The Catalytic Domain Of Human Soluble
Guanylate Cyclase 1 Beta 3.
pdb|2WZ1|B Chain B, Structure Of The Catalytic Domain Of Human Soluble
Guanylate Cyclase 1 Beta 3
Length = 219
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 46/76 (60%), Gaps = 4/76 (5%)
Query: 177 QLLPNCYQGPCVAGVVGLKMPRYCLFGDTVNTASRMESNGQALKIHVSPFTKEVL----D 232
Q+ + G V GV+G +MPRYCLFG+TVN SR E+ G+ KI+VS +T L +
Sbjct: 111 QITIGIHTGEVVTGVIGQRMPRYCLFGNTVNLTSRTETTGEKGKINVSEYTYRCLMSPEN 170
Query: 233 TFGTFDLELRGEVEMK 248
+ F LE RG V MK
Sbjct: 171 SDPQFHLEHRGPVSMK 186
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 40/63 (63%), Gaps = 7/63 (11%)
Query: 10 QSVVAETYDSVTIYFSDIVGFTSLSAEST----PLQVVELLNDLYTCFDSVIE---NFDV 62
+ V A+ YD+VTI FS IVGF + ++ +++V LLNDLYT FD++ + N V
Sbjct: 3 RPVPAKRYDNVTILFSGIVGFNAFCSKHASGEGAMKIVNLLNDLYTRFDTLTDSRKNPFV 62
Query: 63 YKV 65
YKV
Sbjct: 63 YKV 65
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 248 KVETIGDAYMVVSGLPMRNGNLHAREIARMSLALLDTVVTFTIRHRPTDQLKLRIGMHTG 307
KVET+GD YM VSGLP + HAR I ++L +++ + + +++ IG+HTG
Sbjct: 64 KVETVGDKYMTVSGLPEPCIH-HARSICHLALDMMEIAGQVQVD---GESVQITIGIHTG 119
Score = 32.0 bits (71), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Query: 329 QSVVAETYDSVTIYFSDIVGFTSLSAESTPELRGEVEMK 367
+ V A+ YD+VTI FS IVGF + ++ GE MK
Sbjct: 3 RPVPAKRYDNVTILFSGIVGFNAFCSK---HASGEGAMK 38
>pdb|3UVJ|A Chain A, Crystal Structure Of The Catalytic Domain Of The
Heterodimeric Human Soluble Guanylate Cyclase 1.
pdb|3UVJ|C Chain C, Crystal Structure Of The Catalytic Domain Of The
Heterodimeric Human Soluble Guanylate Cyclase 1
Length = 225
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 41/57 (71%)
Query: 9 GQSVVAETYDSVTIYFSDIVGFTSLSAESTPLQVVELLNDLYTCFDSVIENFDVYKV 65
GQ V A+ + +VT+ FSDIVGFT++ ++ +PLQV+ +LN LYT FD DVYKV
Sbjct: 4 GQVVQAKKFSNVTMLFSDIVGFTAICSQCSPLQVITMLNALYTRFDQQCGELDVYKV 60
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 37/65 (56%)
Query: 183 YQGPCVAGVVGLKMPRYCLFGDTVNTASRMESNGQALKIHVSPFTKEVLDTFGTFDLELR 242
+ G AGVVG+KMPRYCLFG+ V A++ ES KI+VSP T +L F R
Sbjct: 113 HSGSVFAGVVGVKMPRYCLFGNNVTLANKFESCSVPRKINVSPTTYRLLKDCPGFVFTPR 172
Query: 243 GEVEM 247
E+
Sbjct: 173 SREEL 177
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 45/72 (62%), Gaps = 5/72 (6%)
Query: 237 FDLELRGEVEM-KVETIGDAYMVVSGLPMRNGNLHAREIARMSLALLDTVVTFTIRHRPT 295
FD + GE+++ KVETIGDAY V GL + + HA +IA M+L +++ H
Sbjct: 48 FDQQC-GELDVYKVETIGDAYCVAGGL-HKESDTHAVQIALMALKMMELSDEVMSPH--G 103
Query: 296 DQLKLRIGMHTG 307
+ +K+RIG+H+G
Sbjct: 104 EPIKMRIGLHSG 115
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 24/31 (77%)
Query: 328 GQSVVAETYDSVTIYFSDIVGFTSLSAESTP 358
GQ V A+ + +VT+ FSDIVGFT++ ++ +P
Sbjct: 4 GQVVQAKKFSNVTMLFSDIVGFTAICSQCSP 34
>pdb|3UVJ|B Chain B, Crystal Structure Of The Catalytic Domain Of The
Heterodimeric Human Soluble Guanylate Cyclase 1.
pdb|3UVJ|D Chain D, Crystal Structure Of The Catalytic Domain Of The
Heterodimeric Human Soluble Guanylate Cyclase 1
Length = 220
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 45/76 (59%), Gaps = 4/76 (5%)
Query: 177 QLLPNCYQGPCVAGVVGLKMPRYCLFGDTVNTASRMESNGQALKIHVSPFTKEVL----D 232
Q+ + G V GV+G +MPRY LFG+TVN SR E+ G+ KI+VS +T L +
Sbjct: 112 QITIGIHTGEVVTGVIGQRMPRYSLFGNTVNLTSRTETTGEKGKINVSEYTYRCLMSPEN 171
Query: 233 TFGTFDLELRGEVEMK 248
+ F LE RG V MK
Sbjct: 172 SDPQFHLEHRGPVSMK 187
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 40/63 (63%), Gaps = 7/63 (11%)
Query: 10 QSVVAETYDSVTIYFSDIVGFTSLSAEST----PLQVVELLNDLYTCFDSVIE---NFDV 62
+ V A+ YD+VTI FS IVGF + ++ +++V LLNDLYT FD++ + N V
Sbjct: 4 RPVPAKRYDNVTILFSGIVGFNAFCSKHASGEGAMKIVNLLNDLYTRFDTLTDSRKNPFV 63
Query: 63 YKV 65
YKV
Sbjct: 64 YKV 66
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 248 KVETIGDAYMVVSGLPMRNGNLHAREIARMSLALLDTVVTFTIRHRPTDQLKLRIGMHTG 307
KVET+ D YM VSGLP + HAR I ++L +++ + + +++ IG+HTG
Sbjct: 65 KVETVCDKYMTVSGLPEPCIH-HARSICHLALDMMEIAGQVQVD---GESVQITIGIHTG 120
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Query: 329 QSVVAETYDSVTIYFSDIVGFTSLSAESTPELRGEVEMK 367
+ V A+ YD+VTI FS IVGF + ++ GE MK
Sbjct: 4 RPVPAKRYDNVTILFSGIVGFNAFCSK---HASGEGAMK 39
>pdb|1AB8|A Chain A, Rat Type Ii Adenylyl Cyclase C2 DomainFORSKOLIN COMPLEX
pdb|1AB8|B Chain B, Rat Type Ii Adenylyl Cyclase C2 DomainFORSKOLIN COMPLEX
Length = 220
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 176 YQLLPNCYQGPCVAGVVGLKMPRYCLFGDTVNTASRMESNGQALKIHVSPFTKEVLDTFG 235
++L GP +AGV+G + P+Y ++G+TVN ASRM+S G KI V+ T +L T G
Sbjct: 124 FKLRVGINHGPVIAGVIGAQKPQYDIWGNTVNVASRMDSTGVLDKIQVTEETSLILQTLG 183
Query: 236 TFDLELRGEVEMK 248
+ RG + +K
Sbjct: 184 -YTCTCRGIINVK 195
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 10/69 (14%)
Query: 248 KVETIGDAYMVVSGLPMRNGNLHAREIARMSLALLDTVVTF---------TIRHRPTDQL 298
K++TIG YM +GL HA+E R + + T+V F I +
Sbjct: 66 KIKTIGSTYMAATGLSAIPSQEHAQEPERQYMH-IGTMVEFAYALVGKLDAINKHSFNDF 124
Query: 299 KLRIGMHTG 307
KLR+G++ G
Sbjct: 125 KLRVGINHG 133
>pdb|1AZS|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase
pdb|1CJK|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5'-(Alpha Thio)-Triphosphate (Rp), Mg, And Mn
pdb|1CJT|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mn, And Mg
pdb|1CJU|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp And Mg
pdb|1CJV|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mg, And Zn
pdb|1CS4|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And
Mg
pdb|1TL7|B Chain B, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With 2'(3')-O-(N-
Methylanthraniloyl)-Guanosine 5'-Triphosphate And Mn
pdb|1U0H|B Chain B, Structural Basis For The Inhibition Of Mammalian Adenylyl
Cyclase By Mant-gtp
pdb|2GVD|B Chain B, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With Tnp-Atp And Mn
pdb|2GVZ|B Chain B, Crystal Structure Of Complex Of Gs- With The Catalytic
Domains Of Mammalian Adenylyl Cyclase: Complex With
Mant- Atp And Mn
pdb|3C14|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Ca
pdb|3C15|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Mg
pdb|3C16|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Adenosine-5'-Triphosphate And Ca
pdb|3G82|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Mant-Itp And Mn
pdb|3MAA|B Chain B, Complex Of Gs-alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5-o-(l-thiophosphate) And Low Ca Concentration
Length = 212
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 176 YQLLPNCYQGPCVAGVVGLKMPRYCLFGDTVNTASRMESNGQALKIHVSPFTKEVLDTFG 235
++L GP +AGV+G + P+Y ++G+TVN ASRM+S G KI V+ T +L T G
Sbjct: 125 FKLRVGINHGPVIAGVIGAQKPQYDIWGNTVNVASRMDSTGVLDKIQVTEETSLILQTLG 184
Query: 236 TFDLELRGEVEMK 248
+ RG + +K
Sbjct: 185 -YTCTCRGIINVK 196
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 10/69 (14%)
Query: 248 KVETIGDAYMVVSGLPMRNGNLHAREIARMSLALLDTVVTF---------TIRHRPTDQL 298
K++TIG YM +GL HA+E R + + T+V F I +
Sbjct: 67 KIKTIGSTYMAATGLSAIPSQEHAQEPERQYMH-IGTMVEFAYALVGKLDAINKHSFNDF 125
Query: 299 KLRIGMHTG 307
KLR+G++ G
Sbjct: 126 KLRVGINHG 134
>pdb|1CUL|B Chain B, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg
Length = 208
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 176 YQLLPNCYQGPCVAGVVGLKMPRYCLFGDTVNTASRMESNGQALKIHVSPFTKEVLDTFG 235
++L GP +AGV+G + P+Y ++G+TVN ASRM+S G KI V+ T +L T G
Sbjct: 121 FKLRVGINHGPVIAGVIGAQKPQYDIWGNTVNVASRMDSTGVLDKIQVTEETSLILQTLG 180
Query: 236 TFDLELRGEVEMK 248
+ RG + +K
Sbjct: 181 -YTCTCRGIINVK 192
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 10/69 (14%)
Query: 248 KVETIGDAYMVVSGLPMRNGNLHAREIARMSLALLDTVVTF---------TIRHRPTDQL 298
K++TIG YM +GL HA+E R + + T+V F I +
Sbjct: 63 KIKTIGSTYMAATGLSAIPSQEHAQEPERQYMH-IGTMVEFAYALVGKLDAINKHSFNDF 121
Query: 299 KLRIGMHTG 307
KLR+G++ G
Sbjct: 122 KLRVGINHG 130
>pdb|1YK9|A Chain A, Crystal Structure Of A Mutant Form Of The Mycobacterial
Adenylyl Cyclase Rv1625c
Length = 204
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 45/91 (49%), Gaps = 13/91 (14%)
Query: 185 GPCVAGVVGLKMPRYCLFGDTVNTASRMESNGQALKIHVSPFTKEVLDTFGTFDLELRGE 244
GP VAGVVG + RYC++GD VN ASRMES +I V E L F L RG
Sbjct: 111 GPVVAGVVGSRRFRYCVWGDAVNVASRMESTDSVGQIQVPDEVYERLKD--DFVLRERGH 168
Query: 245 VEMKVETIGDAYMVVSGLPMRNGNLHAREIA 275
+ +K + + MR L R++A
Sbjct: 169 INVKGKGV-----------MRTWYLIGRKVA 188
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 37/56 (66%)
Query: 10 QSVVAETYDSVTIYFSDIVGFTSLSAESTPLQVVELLNDLYTCFDSVIENFDVYKV 65
++++A+ YD ++ F+DIVGFT ++ + P +V L+ LY+ FD +++ + K+
Sbjct: 1 RNIIADKYDEASVLFADIVGFTERASSTAPADLVRFLDRLYSAFDELVDQHGLEKI 56
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 248 KVETIGDAYMVVSGLPMRNGNLHAREIARMSLALLDTVVTFTIRHRPTDQLKLRIGMHTG 307
K+E GD+YMVVSG+P R H + +A +L + T V ++ + + LR+G+ TG
Sbjct: 55 KIEVSGDSYMVVSGVP-RPRPDHTQALADFALDM--TNVAAQLKDPRGNPVPLRVGLATG 111
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 22/30 (73%)
Query: 329 QSVVAETYDSVTIYFSDIVGFTSLSAESTP 358
++++A+ YD ++ F+DIVGFT ++ + P
Sbjct: 1 RNIIADKYDEASVLFADIVGFTERASSTAP 30
>pdb|1CJK|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5'-(Alpha Thio)-Triphosphate (Rp), Mg, And Mn
pdb|1CJT|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mn, And Mg
pdb|1CJU|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp And Mg
pdb|1CJV|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mg, And Zn
pdb|1CUL|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg
pdb|1TL7|A Chain A, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With 2'(3')-O-(N-
Methylanthraniloyl)-Guanosine 5'-Triphosphate And Mn
Length = 217
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 32/47 (68%)
Query: 10 QSVVAETYDSVTIYFSDIVGFTSLSAESTPLQVVELLNDLYTCFDSV 56
+ + +D+V+I F+DI GFTSL+++ T ++V LN+L+ FD +
Sbjct: 17 HKIYIQKHDNVSILFADIEGFTSLASQCTAQELVMTLNELFARFDKL 63
Score = 35.0 bits (79), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 183 YQGPCVAGVVGLKMPRYCLFGDTVNTASRMESNGQALKIHVSPFTKEVLDTFGTFDLE 240
+ G GV+GL+ ++ ++ + V A+ ME+ G+A +IH++ T L+ G +++E
Sbjct: 125 HSGRVHCGVLGLRKWQFDVWSNDVTLANHMEAGGKAGRIHITKATLSYLN--GDYEVE 180
Score = 34.7 bits (78), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 234 FGTFDLELRGEVE-MKVETIGDAYMVVSGLPMRNGNLHAREIARMSLALLDTVVTFTIRH 292
F FD +L E ++++ +GD Y VSGLP + HA M + +++ + +R
Sbjct: 57 FARFD-KLAAENHCLRIKILGDCYYCVSGLPEARAD-HAHCCVEMGMDMIEAIS--LVRE 112
Query: 293 RPTDQLKLRIGMHTG 307
+ +R+G+H+G
Sbjct: 113 MTGVNVNMRVGIHSG 127
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 329 QSVVAETYDSVTIYFSDIVGFTSLSAESTPE 359
+ + +D+V+I F+DI GFTSL+++ T +
Sbjct: 17 HKIYIQKHDNVSILFADIEGFTSLASQCTAQ 47
>pdb|1CS4|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And
Mg
pdb|1U0H|A Chain A, Structural Basis For The Inhibition Of Mammalian
Adenylyl Cyclase By Mant-gtp
pdb|2GVD|A Chain A, Complex Of Gs- With The Catalytic Domains Of Mammalian
Adenylyl Cyclase: Complex With Tnp-Atp And Mn
pdb|2GVZ|A Chain A, Crystal Structure Of Complex Of Gs- With The Catalytic
Domains Of Mammalian Adenylyl Cyclase: Complex With
Mant- Atp And Mn
pdb|3C14|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Ca
pdb|3C15|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Pyrophosphate
And Mg
pdb|3C16|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Adenosine-5'-Triphosphate And Ca
pdb|3G82|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Mant-Itp And
Mn
pdb|3MAA|A Chain A, Complex Of Gs-alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5-o-(l-thiophosphate) And Low Ca Concentration
Length = 225
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 32/47 (68%)
Query: 10 QSVVAETYDSVTIYFSDIVGFTSLSAESTPLQVVELLNDLYTCFDSV 56
+ + +D+V+I F+DI GFTSL+++ T ++V LN+L+ FD +
Sbjct: 25 HKIYIQKHDNVSILFADIEGFTSLASQCTAQELVMTLNELFARFDKL 71
Score = 35.0 bits (79), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 183 YQGPCVAGVVGLKMPRYCLFGDTVNTASRMESNGQALKIHVSPFTKEVLDTFGTFDLE 240
+ G GV+GL+ ++ ++ + V A+ ME+ G+A +IH++ T L+ G +++E
Sbjct: 133 HSGRVHCGVLGLRKWQFDVWSNDVTLANHMEAGGKAGRIHITKATLSYLN--GDYEVE 188
Score = 34.7 bits (78), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 234 FGTFDLELRGEVE-MKVETIGDAYMVVSGLPMRNGNLHAREIARMSLALLDTVVTFTIRH 292
F FD +L E ++++ +GD Y VSGLP + HA M + +++ + +R
Sbjct: 65 FARFD-KLAAENHCLRIKILGDCYYCVSGLPEARAD-HAHCCVEMGMDMIEAIS--LVRE 120
Query: 293 RPTDQLKLRIGMHTG 307
+ +R+G+H+G
Sbjct: 121 MTGVNVNMRVGIHSG 135
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 329 QSVVAETYDSVTIYFSDIVGFTSLSAESTPE 359
+ + +D+V+I F+DI GFTSL+++ T +
Sbjct: 25 HKIYIQKHDNVSILFADIEGFTSLASQCTAQ 55
>pdb|1AZS|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase
Length = 220
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 32/47 (68%)
Query: 10 QSVVAETYDSVTIYFSDIVGFTSLSAESTPLQVVELLNDLYTCFDSV 56
+ + +D+V+I F+DI GFTSL+++ T ++V LN+L+ FD +
Sbjct: 25 HKIYIQKHDNVSILFADIEGFTSLASQCTAQELVMTLNELFARFDKL 71
Score = 35.0 bits (79), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 183 YQGPCVAGVVGLKMPRYCLFGDTVNTASRMESNGQALKIHVSPFTKEVLDTFGTFDLE 240
+ G GV+GL+ ++ ++ + V A+ ME+ G+A +IH++ T L+ G +++E
Sbjct: 133 HSGRVHCGVLGLRKWQFDVWSNDVTLANHMEAGGKAGRIHITKATLSYLN--GDYEVE 188
Score = 34.7 bits (78), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 234 FGTFDLELRGEVE-MKVETIGDAYMVVSGLPMRNGNLHAREIARMSLALLDTVVTFTIRH 292
F FD +L E ++++ +GD Y VSGLP + HA M + +++ + +R
Sbjct: 65 FARFD-KLAAENHCLRIKILGDCYYCVSGLPEARAD-HAHCCVEMGMDMIEAIS--LVRE 120
Query: 293 RPTDQLKLRIGMHTG 307
+ +R+G+H+G
Sbjct: 121 MTGVNVNMRVGIHSG 135
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 329 QSVVAETYDSVTIYFSDIVGFTSLSAESTPE 359
+ + +D+V+I F+DI GFTSL+++ T +
Sbjct: 25 HKIYIQKHDNVSILFADIEGFTSLASQCTAQ 55
>pdb|1WC0|A Chain A, Soluble Adenylyl Cyclase Cyac From S. Platensis In
Complex With Alpha,Beta-Methylene-Atp
pdb|1WC0|B Chain B, Soluble Adenylyl Cyclase Cyac From S. Platensis In
Complex With Alpha,Beta-Methylene-Atp
pdb|1WC3|A Chain A, Soluble Adenylyl Cyclase Cyac From S. Platensis In
Complex With Alpha,Beta-Methylene-Atp And Strontium
pdb|1WC3|B Chain B, Soluble Adenylyl Cyclase Cyac From S. Platensis In
Complex With Alpha,Beta-Methylene-Atp And Strontium
pdb|1WC4|A Chain A, Soluble Adenylyl Cyclase Cyac From S. Platensis In
Complex With Alpha,Beta-Methylene-Atp And Europium
pdb|1WC4|B Chain B, Soluble Adenylyl Cyclase Cyac From S. Platensis In
Complex With Alpha,Beta-Methylene-Atp And Europium
pdb|1WC5|A Chain A, Soluble Adenylyl Cyclase Cyac From S. Platensis In
Complex With Alpha,Beta-Methylene-Atp In Presence Of
Bicarbonate
pdb|1WC5|B Chain B, Soluble Adenylyl Cyclase Cyac From S. Platensis In
Complex With Alpha,Beta-Methylene-Atp In Presence Of
Bicarbonate
pdb|1WC5|C Chain C, Soluble Adenylyl Cyclase Cyac From S. Platensis In
Complex With Alpha,Beta-Methylene-Atp In Presence Of
Bicarbonate
pdb|1WC5|D Chain D, Soluble Adenylyl Cyclase Cyac From S. Platensis In
Complex With Alpha,Beta-Methylene-Atp In Presence Of
Bicarbonate
pdb|2BW7|A Chain A, A Novel Mechanism For Adenylyl Cyclase Inhibition From
The Crystal Structure Of Its Complex With Catechol
Estrogen
pdb|2BW7|B Chain B, A Novel Mechanism For Adenylyl Cyclase Inhibition From
The Crystal Structure Of Its Complex With Catechol
Estrogen
pdb|2BW7|C Chain C, A Novel Mechanism For Adenylyl Cyclase Inhibition From
The Crystal Structure Of Its Complex With Catechol
Estrogen
pdb|2BW7|D Chain D, A Novel Mechanism For Adenylyl Cyclase Inhibition From
The Crystal Structure Of Its Complex With Catechol
Estrogen
Length = 219
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 20 VTIYFSDIVGFTSLSAESTPLQVVELLND-LYTCFDSVIEN 59
+TI FSDIVGFT +S V ELLN+ L +V EN
Sbjct: 28 ITILFSDIVGFTRMSNALQSQGVAELLNEYLGEMTRAVFEN 68
>pdb|1WC1|A Chain A, Soluble Adenylyl Cyclase Cyac From S. Platensis In
Complex With Rp-atpalphas
pdb|1WC1|B Chain B, Soluble Adenylyl Cyclase Cyac From S. Platensis In
Complex With Rp-atpalphas
pdb|1WC1|C Chain C, Soluble Adenylyl Cyclase Cyac From S. Platensis In
Complex With Rp-atpalphas
pdb|1WC6|A Chain A, Soluble Adenylyl Cyclase Cyac From S. Platensis In
Complex With Rp-atpalphas In Presence Of Bicarbonate
pdb|1WC6|B Chain B, Soluble Adenylyl Cyclase Cyac From S. Platensis In
Complex With Rp-atpalphas In Presence Of Bicarbonate
pdb|1WC6|C Chain C, Soluble Adenylyl Cyclase Cyac From S. Platensis In
Complex With Rp-atpalphas In Presence Of Bicarbonate
Length = 226
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 20 VTIYFSDIVGFTSLSAESTPLQVVELLND-LYTCFDSVIEN 59
+TI FSDIVGFT +S V ELLN+ L +V EN
Sbjct: 35 ITILFSDIVGFTRMSNALQSQGVAELLNEYLGEMTRAVFEN 75
>pdb|2W01|A Chain A, Crystal Structure Of The Guanylyl Cyclase Cya2
pdb|2W01|B Chain B, Crystal Structure Of The Guanylyl Cyclase Cya2
pdb|2W01|C Chain C, Crystal Structure Of The Guanylyl Cyclase Cya2
pdb|2W01|D Chain D, Crystal Structure Of The Guanylyl Cyclase Cya2
pdb|2W01|E Chain E, Crystal Structure Of The Guanylyl Cyclase Cya2
pdb|2W01|F Chain F, Crystal Structure Of The Guanylyl Cyclase Cya2
Length = 208
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 7/48 (14%)
Query: 20 VTIYFSDIVGFTSLSAESTPLQVVELLN-------DLYTCFDSVIENF 60
+TI SD+ GFTS S P +VV++LN D+ T I+ F
Sbjct: 15 ITILTSDLRGFTSTSEGLNPEEVVKVLNIYFGKMADVITHHGGTIDEF 62
>pdb|1BIF|A Chain A, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase
Bifunctional Enzyme Complexed With Atp-G-S And Phosphate
Length = 469
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 10/90 (11%)
Query: 68 VVLSEIYSISLAALDY---ESNNILDNLLSRMEQYANNLEALVEERTADYLEEKRKCEEL 124
V+ + I + L + DY +S+ ++ + R+E Y N+ E+L E E+ R +
Sbjct: 164 VIAANIVQVKLGSPDYVNRDSDEATEDFMRRIECYENSYESLDE-------EQDRDLSYI 216
Query: 125 LYQLLPKDYESNNILDNLLSRMEQYANNLE 154
+ + Y N + D++ SR+ Y N+
Sbjct: 217 KIMDVGQSYVVNRVADHIQSRIVYYLMNIH 246
>pdb|2BIF|A Chain A, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase H256a
Mutant With F6p In Phosphatase Active Site
pdb|2BIF|B Chain B, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase H256a
Mutant With F6p In Phosphatase Active Site
Length = 469
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 10/90 (11%)
Query: 68 VVLSEIYSISLAALDY---ESNNILDNLLSRMEQYANNLEALVEERTADYLEEKRKCEEL 124
V+ + I + L + DY +S+ ++ + R+E Y N+ E+L E E+ R +
Sbjct: 164 VIAANIVQVKLGSPDYVNRDSDEATEDFMRRIECYENSYESLDE-------EQDRDLSYI 216
Query: 125 LYQLLPKDYESNNILDNLLSRMEQYANNLE 154
+ + Y N + D++ SR+ Y N+
Sbjct: 217 KIMDVGQSYVVNRVADHIQSRIVYYLMNIH 246
>pdb|3BIF|A Chain A, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase Empty
6-Pf-2k Active Site
Length = 468
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 10/90 (11%)
Query: 68 VVLSEIYSISLAALDY---ESNNILDNLLSRMEQYANNLEALVEERTADYLEEKRKCEEL 124
V+ + I + L + DY +S+ ++ + R+E Y N+ E+L E E+ R +
Sbjct: 163 VIAANIVQVKLGSPDYVNRDSDEATEDFMRRIECYENSYESLDE-------EQDRDLSYI 215
Query: 125 LYQLLPKDYESNNILDNLLSRMEQYANNLE 154
+ + Y N + D++ SR+ Y N+
Sbjct: 216 KIMDVGQSYVVNRVADHIQSRIVYYLMNIH 245
>pdb|3AT5|B Chain B, Side-Necked Turtle (Pleurodira, Chelonia, Reptilia)
Hemoglobin: Cdna- Derived Primary Structures And X-Ray
Crystal Structures Of Hb A
pdb|3AT6|B Chain B, Side-Necked Turtle (Pleurodira, Chelonia, Reptilia)
Hemoglobin: Cdna- Derived Primary Structures And X-Ray
Crystal Structures Of Hb A
Length = 146
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 17 YDSVTIYFSDIVGFTSLSAESTPLQVVELLNDLYTCFDSVIENFDVYKVIFVVLSEIYSI 76
Y +FS +S SA +V + T F ++N D K F LSE++S
Sbjct: 35 YPWTQRFFSSFGNLSSPSAILHNAKVHAHGKKVLTSFGEAVKNLDQIKQTFAQLSELHSD 94
Query: 77 SLAALDYESNNILDNLL 93
L +D E+ +L N+L
Sbjct: 95 KL-HVDPENFKLLGNIL 110
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,836,867
Number of Sequences: 62578
Number of extensions: 385735
Number of successful extensions: 1206
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1141
Number of HSP's gapped (non-prelim): 79
length of query: 368
length of database: 14,973,337
effective HSP length: 100
effective length of query: 268
effective length of database: 8,715,537
effective search space: 2335763916
effective search space used: 2335763916
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)