Query psy7403
Match_columns 368
No_of_seqs 305 out of 2142
Neff 8.5
Searched_HMMs 46136
Date Fri Aug 16 17:22:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7403.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7403hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1023|consensus 100.0 2.1E-39 4.5E-44 316.3 11.9 254 101-368 194-463 (484)
2 KOG4171|consensus 100.0 4.8E-39 1E-43 316.8 12.4 208 142-368 388-608 (671)
3 KOG4171|consensus 100.0 1.9E-37 4E-42 305.6 11.1 198 1-262 424-621 (671)
4 KOG3619|consensus 100.0 4.8E-36 1E-40 306.2 11.8 155 8-227 101-255 (867)
5 KOG1023|consensus 100.0 9.7E-32 2.1E-36 262.6 5.4 200 1-263 278-477 (484)
6 PF00211 Guanylate_cyc: Adenyl 99.9 1.9E-27 4.1E-32 208.5 7.7 182 13-259 2-183 (184)
7 smart00044 CYCc Adenylyl- / gu 99.9 1.8E-24 4E-29 191.3 11.4 169 1-232 17-186 (194)
8 KOG3618|consensus 99.9 3.5E-25 7.6E-30 217.8 6.0 154 15-233 336-489 (1318)
9 COG2114 CyaA Adenylate cyclase 99.9 4.3E-23 9.4E-28 186.9 10.9 171 18-261 45-216 (227)
10 KOG3618|consensus 99.9 1.4E-22 3E-27 199.7 4.3 193 163-368 1047-1259(1318)
11 KOG3619|consensus 99.9 6.6E-22 1.4E-26 202.9 8.5 194 10-259 641-841 (867)
12 cd07302 CHD cyclase homology d 99.8 4E-21 8.7E-26 166.2 9.9 168 19-250 1-168 (177)
13 PF00211 Guanylate_cyc: Adenyl 99.8 6.2E-20 1.3E-24 160.8 5.6 154 198-368 9-173 (184)
14 smart00044 CYCc Adenylyl- / gu 99.7 4.5E-18 9.8E-23 150.4 7.7 171 167-344 2-185 (194)
15 COG2114 CyaA Adenylate cyclase 99.7 2.1E-17 4.5E-22 149.8 11.1 153 196-368 45-203 (227)
16 cd07302 CHD cyclase homology d 99.7 4.5E-16 9.7E-21 134.4 10.8 156 198-368 2-167 (177)
17 cd07556 Nucleotidyl_cyc_III Cl 98.3 2.9E-06 6.4E-11 69.1 8.3 132 19-221 1-132 (133)
18 cd07556 Nucleotidyl_cyc_III Cl 96.8 0.01 2.2E-07 47.9 9.0 121 199-334 3-132 (133)
19 PF05165 GGDN: GGDN family; I 90.6 0.89 1.9E-05 41.2 6.8 60 17-79 125-185 (246)
20 PF07701 HNOBA: Heme NO bindin 89.7 0.25 5.5E-06 44.4 2.6 40 141-184 176-216 (219)
21 COG2429 Archaeal GTP cyclohydr 83.4 3.5 7.5E-05 36.8 6.1 60 17-79 129-189 (250)
22 PRK02240 GTP cyclohydrolase II 69.9 19 0.00042 32.9 7.1 60 17-79 132-193 (254)
23 smart00267 GGDEF diguanylate c 56.1 40 0.00086 27.0 6.3 56 18-76 33-88 (163)
24 cd01949 GGDEF Diguanylate-cycl 42.4 72 0.0016 25.3 5.8 56 18-76 30-85 (158)
25 PF00990 GGDEF: GGDEF domain; 38.7 55 0.0012 26.3 4.5 57 17-76 30-86 (161)
26 PRK10245 adrA diguanylate cycl 38.7 91 0.002 30.2 6.6 57 17-76 234-290 (366)
27 COG2199 c-di-GMP synthetase (d 38.4 1.1E+02 0.0024 25.7 6.5 57 17-76 49-105 (181)
28 PRK09894 diguanylate cyclase; 33.6 1.1E+02 0.0023 28.1 6.0 56 18-76 157-212 (296)
29 PRK02240 GTP cyclohydrolase II 33.3 1.3E+02 0.0028 27.6 6.1 61 22-84 4-67 (254)
30 cd06635 STKc_TAO1 Catalytic do 30.7 91 0.002 28.9 5.1 64 101-164 251-314 (317)
31 TIGR00254 GGDEF diguanylate cy 29.8 1.6E+02 0.0034 23.6 5.9 56 18-76 32-87 (165)
32 smart00759 Flu_M1_C Influenza 29.0 2.5E+02 0.0054 21.0 5.8 44 115-158 49-92 (95)
33 PRK15426 putative diguanylate 23.4 1.6E+02 0.0035 30.0 5.8 56 18-76 428-483 (570)
34 PF11888 DUF3408: Protein of u 22.9 2.4E+02 0.0052 23.1 5.6 41 119-159 91-132 (136)
35 PRK09966 putative inner membra 22.1 2E+02 0.0043 27.9 5.9 57 17-76 276-332 (407)
No 1
>KOG1023|consensus
Probab=100.00 E-value=2.1e-39 Score=316.34 Aligned_cols=254 Identities=35% Similarity=0.477 Sum_probs=227.5
Q ss_pred hhHHHHHHHhhhhhHHHHHhHHHHHHhhcCCCC---CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhh
Q psy7403 101 NNLEALVEERTADYLEEKRKCEELLYQLLPKDY---ESNNILDNLLSRMEQYANNLEALVEERTADYLEEKRKCEELLYQ 177 (368)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~d~~~~~~e~~~~~L~~~~~~~t~~l~~e~~~~~~Ll~~ 177 (368)
+.+..++++||.|.++.++.+..+...+.+..- ++++++|+|+++||+|+++|++.++++++++..++++.+.||.+
T Consensus 194 ~~l~~l~~~cw~e~P~~rPs~~~i~~~~~~~~~~~~~~~nl~D~m~~~le~Y~~nLe~~v~eRt~~l~~e~~k~d~LL~~ 273 (484)
T KOG1023|consen 194 PELLLLVARCWEEIPEKRPSIEQIRSKLLTINKGGSSKGNLMDSLFRMLESYADNLEKLVDERTAELEEEKKKTDTLLGQ 273 (484)
T ss_pred hHHHHHHHHhcccChhhCccHHHHHhhhhhhcccccccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888999999999999999999888876443 45699999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCcccccc--ccccc-eeEEeccccccchhhhhcccccccccchhHHHHhhhccchhhhhhccccceeeeeec
Q psy7403 178 LLPNCYQGPCVAGVV--GLKMP-RYCLFGDTVNTASRMESNGQALKIHVSPFTKEVLDTFGTFDLELRGEVEMKVETIGD 254 (368)
Q Consensus 178 i~pgi~~G~v~~G~i--G~~~~-~~~lfgd~Vnfa~rles~~~~~~I~is~~~~~l~~~~~~fd~~~~~~~~~K~ktigd 254 (368)
++|..++.++..|.. +.... .+++|+|+|+||. +++.+.|.++ +..++++|+.||..+.++++||++|+||
T Consensus 274 mLP~~VA~~lk~G~~v~pe~~~~vti~fsDiv~fT~-l~~~~~P~~v-----v~~lNdlyt~Fd~ii~~~d~yKVetiGD 347 (484)
T KOG1023|consen 274 MLPKSVAESLKLGKTVDPESFDSVTIYFSDIVGFTV-LSSNSTPIQV-----VTLLNDLYTTFDRIIDKHDVYKVETIGD 347 (484)
T ss_pred hcCHHHhhHhhcCCcCCccccCceeeeeHHHHHHHH-HHhcCCCcee-----eeeccchHHhhhhcccccCCeeEeccCc
Confidence 999999999988832 33333 3899999999998 6677777775 3568899999999999999999999999
Q ss_pred EEEEEecCCCCCCChhHHHHHHHHHHHHHHHhhcccCCCCCCcceEEEeecCCCcce---------ecccCChHhHHHHH
Q psy7403 255 AYMVVSGLPMRNGNLHAREIARMSLALLDTVVTFTIRHRPTDQLKLRIGMHTGCRDK---------FRDQSSFVSVASQL 325 (368)
Q Consensus 255 ~Y~~~~g~p~~~~~~ha~~~~~~al~~~~~~~~~~~~~~~~~~l~iRIGihtG~v~~---------~~~~gd~vn~A~rl 325 (368)
+||++||+|.+++..|+.+++.+++++++.+..|..+|.|..++++|||+||||+++ |+.+|||||+||||
T Consensus 348 aYmvvSglp~~n~~~H~~eia~msl~~~~~~~~f~i~H~P~~~l~iRig~~sg~~~agVvgl~mPRYclFgDtvn~AsrM 427 (484)
T KOG1023|consen 348 AYMVVSGLPIRNGYRHAREIASMALGLRSFLESFSLPHRPWEKLRLRIGFHSGPVVAGVVGLKMPRYCLFGDTVNTASRM 427 (484)
T ss_pred ceeecccCceecHhHHHHHHHHHHHHHHHHHhccCCCCCCchhhheeeccccCCceecccccCCCcccchhhHHHHHhhh
Confidence 999999999999888999999999999999999999999999999999999999988 99999999999999
Q ss_pred HcCCCCCceeecceeeeeecc-cCcccccCCCCccccccccccC
Q psy7403 326 ILGQSVVAETYDSVTIYFSDI-VGFTSLSAESTPELRGEVEMKE 368 (368)
Q Consensus 326 es~~~~~~~~~~~~t~~f~~~-~~f~~~~~~~~~~~~~~~~~k~ 368 (368)
||.+. +.+|++..+...... .+|. .++||++++|.
T Consensus 428 es~G~-~~i~~s~~~~~~l~~~~~~~-------~e~rG~v~~kg 463 (484)
T KOG1023|consen 428 ESNGK-LMIHLSEEAKNLLTERPQFE-------TEERGLVELKG 463 (484)
T ss_pred hhcCC-eEEEecHHHHHHHHhcCcee-------eeccCcEEeec
Confidence 99999 999999998666432 2555 99999999984
No 2
>KOG4171|consensus
Probab=100.00 E-value=4.8e-39 Score=316.83 Aligned_cols=208 Identities=29% Similarity=0.397 Sum_probs=181.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhcCCCCCCCCcccc-ccc-cccc-eeEEeccccccchhhhhcccc
Q psy7403 142 LLSRMEQYANNLEALVEERTADYLEEKRKCEELLYQLLPNCYQGPCVAG-VVG-LKMP-RYCLFGDTVNTASRMESNGQA 218 (368)
Q Consensus 142 ~~~~~e~~~~~L~~~~~~~t~~l~~e~~~~~~Ll~~i~pgi~~G~v~~G-~iG-~~~~-~~~lfgd~Vnfa~rles~~~~ 218 (368)
+..+||+...+|+ +.+++|+.||++++.||++|.|..+|.++..| .+. .+.. .+++|+|+|+|++ +++.+.|
T Consensus 388 l~~~lE~~~~~Le----~~~~~Le~EKkkTd~LLy~mlP~~VA~qLr~g~~v~a~~f~~vTilFsdIv~Ft~-ic~~ctp 462 (671)
T KOG4171|consen 388 LNLELEKLKEKLE----KMTRELEEEKKKTDTLLYSMLPRSVAQQLRQGESVDAKEFDDVTILFSDIVGFTA-ICSQCTP 462 (671)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHhhHHHHHHHhCCHHHHHHHHcCCCcCccccCceEEEEeccchHHh-HhhccCc
Confidence 4445565555554 45589999999999999999999999888877 233 3332 4999999999998 7788888
Q ss_pred cccccchhHHHHhhhccchhhhhhccccceeeeeecEEEEEecCCCCCCChhHHHHHHHHHHHHHHHhhcccCCCCCCcc
Q psy7403 219 LKIHVSPFTKEVLDTFGTFDLELRGEVEMKVETIGDAYMVVSGLPMRNGNLHAREIARMSLALLDTVVTFTIRHRPTDQL 298 (368)
Q Consensus 219 ~~I~is~~~~~l~~~~~~fd~~~~~~~~~K~ktigd~Y~~~~g~p~~~~~~ha~~~~~~al~~~~~~~~~~~~~~~~~~l 298 (368)
.+| +..|+++|++||.++..+.+||++|+||+||+++|+|..+ ..||+.++++||+|+...+.+..+. .+.++
T Consensus 463 ~~v-----V~~LN~lyt~fD~~i~~~~VYKVETIGDaYm~vsG~P~~~-~~HAe~i~~~AL~Mm~~ak~v~~p~-~~~pi 535 (671)
T KOG4171|consen 463 MQV-----VNMLNELYTRFDRIIDTHDVYKVETIGDAYMVVSGLPDAS-DYHAEHIADLALGMMEEAKEVVSPV-TGEPI 535 (671)
T ss_pred HHH-----HHHHHHHHHHHHHhhcccCeEEEeeccchheeecCCCCCC-hhHHHHHHHHHHHHHHHhhhhcCcC-CCCce
Confidence 776 6889999999999999999999999999999999999999 6899999999999999999987654 57899
Q ss_pred eEEEeecCCCcce---------ecccCChHhHHHHHHcCCCCCceeecceeeeeecccC-cccccCCCCccccccccccC
Q psy7403 299 KLRIGMHTGCRDK---------FRDQSSFVSVASQLILGQSVVAETYDSVTIYFSDIVG-FTSLSAESTPELRGEVEMKE 368 (368)
Q Consensus 299 ~iRIGihtG~v~~---------~~~~gd~vn~A~rles~~~~~~~~~~~~t~~f~~~~~-f~~~~~~~~~~~~~~~~~k~ 368 (368)
+||||||||||++ |+++|||||+||||||++.|++||+|+.|..-....| |+ .++||+|++|.
T Consensus 536 ~iRiGIHsG~VvAGVVG~kmPRYCLFGdTVn~AsrmES~s~p~KI~vS~~T~~~l~~~~~f~-------f~pRg~v~vk~ 608 (671)
T KOG4171|consen 536 QIRIGIHSGPVVAGVVGVKMPRYCLFGDTVNLASRMESSSVPGKINVSPTTYRKLKKQGSFE-------FEPRGRVEVKG 608 (671)
T ss_pred EEEEEeccCCeeeeeecccccceeecCCchhhhhhhhcCCCCceEEeCHHHHHHHHhCCCce-------eeecCccccCC
Confidence 9999999999988 9999999999999999999999999999976655555 66 99999999984
No 3
>KOG4171|consensus
Probab=100.00 E-value=1.9e-37 Score=305.63 Aligned_cols=198 Identities=44% Similarity=0.685 Sum_probs=179.8
Q ss_pred ChhhHhhcCCcccccccCceEEEeeccCCchhhccCCChHHHHHHHHHHHHHHhhhhhcccceeEEEEeecceEEEeecc
Q psy7403 1 SVASQLILGQSVVAETYDSVTIYFSDIVGFTSLSAESTPLQVVELLNDLYTCFDSVIENFDVYKVIFVVLSEIYSISLAA 80 (368)
Q Consensus 1 ~i~~~l~~g~~~~~~~~~~vtilf~di~gft~ls~~~~~~~~~~~Ln~~f~~~~~~i~~~~~~~~~~~~~Gd~~~~~~~g 80 (368)
+||++|+.|+...+.+|++|||||+||+|||+++..++|.+++++||++|+.||+++.-|++||++++ ||+||+ ++|
T Consensus 424 ~VA~qLr~g~~v~a~~f~~vTilFsdIv~Ft~ic~~ctp~~vV~~LN~lyt~fD~~i~~~~VYKVETI--GDaYm~-vsG 500 (671)
T KOG4171|consen 424 SVAQQLRQGESVDAKEFDDVTILFSDIVGFTAICSQCTPMQVVNMLNELYTRFDRIIDTHDVYKVETI--GDAYMV-VSG 500 (671)
T ss_pred HHHHHHHcCCCcCccccCceEEEEeccchHHhHhhccCcHHHHHHHHHHHHHHHHhhcccCeEEEeec--cchhee-ecC
Confidence 59999999999999999999999999999999999999999999999999999999999999999999 999999 999
Q ss_pred ccccccchhhHHHHHHHHhhhhHHHHHHHhhhhhHHHHHhHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q psy7403 81 LDYESNNILDNLLSRMEQYANNLEALVEERTADYLEEKRKCEELLYQLLPKDYESNNILDNLLSRMEQYANNLEALVEER 160 (368)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d~~~~~~e~~~~~L~~~~~~~ 160 (368)
+|.... .|+..++.+|+ .|....
T Consensus 501 ~P~~~~-~HAe~i~~~AL------------------------~Mm~~a-------------------------------- 523 (671)
T KOG4171|consen 501 LPDASD-YHAEHIADLAL------------------------GMMEEA-------------------------------- 523 (671)
T ss_pred CCCCCh-hHHHHHHHHHH------------------------HHHHHh--------------------------------
Confidence 999975 89999999998 444333
Q ss_pred HHHHHHHHhhhHHhhhhcCCCCCCCCccccccccccceeEEeccccccchhhhhcccccccccchhHHHHhhhccchhhh
Q psy7403 161 TADYLEEKRKCEELLYQLLPNCYQGPCVAGVVGLKMPRYCLFGDTVNTASRMESNGQALKIHVSPFTKEVLDTFGTFDLE 240 (368)
Q Consensus 161 t~~l~~e~~~~~~Ll~~i~pgi~~G~v~~G~iG~~~~~~~lfgd~Vnfa~rles~~~~~~I~is~~~~~l~~~~~~fd~~ 240 (368)
++.... ...+++ .||+|+|+|+|++||+|.++|+|++|||+||+|+||||.+.|++|++|+.++..+..-..|++.
T Consensus 524 -k~v~~p-~~~~pi--~iRiGIHsG~VvAGVVG~kmPRYCLFGdTVn~AsrmES~s~p~KI~vS~~T~~~l~~~~~f~f~ 599 (671)
T KOG4171|consen 524 -KEVVSP-VTGEPI--QIRIGIHSGPVVAGVVGVKMPRYCLFGDTVNLASRMESSSVPGKINVSPTTYRKLKKQGSFEFE 599 (671)
T ss_pred -hhhcCc-CCCCce--EEEEEeccCCeeeeeecccccceeecCCchhhhhhhhcCCCCceEEeCHHHHHHHHhCCCceee
Confidence 111110 113345 8999999999999999999999999999999999999999999999999999999887779999
Q ss_pred hhccccceeeeeecEEEEEecC
Q psy7403 241 LRGEVEMKVETIGDAYMVVSGL 262 (368)
Q Consensus 241 ~~~~~~~K~ktigd~Y~~~~g~ 262 (368)
.++.+..|+|+.+.+|++..+.
T Consensus 600 pRg~v~vk~kg~m~tyFL~~~~ 621 (671)
T KOG4171|consen 600 PRGRVEVKGKGPMETYFLERSL 621 (671)
T ss_pred ecCccccCCCCceEEEEEEecC
Confidence 9999999999999999999876
No 4
>KOG3619|consensus
Probab=100.00 E-value=4.8e-36 Score=306.21 Aligned_cols=155 Identities=24% Similarity=0.403 Sum_probs=136.1
Q ss_pred cCCcccccccCceEEEeeccCCchhhccCCChHHHHHHHHHHHHHHhhhhhcccceeEEEEeecceEEEeeccccccccc
Q psy7403 8 LGQSVVAETYDSVTIYFSDIVGFTSLSAESTPLQVVELLNDLYTCFDSVIENFDVYKVIFVVLSEIYSISLAALDYESNN 87 (368)
Q Consensus 8 ~g~~~~~~~~~~vtilf~di~gft~ls~~~~~~~~~~~Ln~~f~~~~~~i~~~~~~~~~~~~~Gd~~~~~~~g~~~~~~~ 87 (368)
.-.+.+.+.|++|+|+|+||+|||.++..+++++++.+||++|.+||++++++++..+|.. ||+|+| ++|+|.+. .
T Consensus 101 ~f~~iy~~~h~nVSIl~adivgft~l~s~~saqelv~~LneLf~rfd~lA~~~~clRiKiL--GdcyyC-vsglp~~~-~ 176 (867)
T KOG3619|consen 101 QFHKLYIQRHDNVSILFADIVGFTQLASQCSAQELVKVLNELFARFDRLAAENHCLRIKIL--GDCYYC-VSGLPEAR-P 176 (867)
T ss_pred ccchhheeeccchHhhHHHHhhhhhhhcCCCHHHHHHHHHHHHHHHHHHHHhcceEeeeee--cceeEE-ecCCCCCC-h
Confidence 3456888999999999999999999999999999999999999999999999999999999 999999 99999765 5
Q ss_pred hhhHHHHHHHHhhhhHHHHHHHhhhhhHHHHHhHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7403 88 ILDNLLSRMEQYANNLEALVEERTADYLEEKRKCEELLYQLLPKDYESNNILDNLLSRMEQYANNLEALVEERTADYLEE 167 (368)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d~~~~~~e~~~~~L~~~~~~~t~~l~~e 167 (368)
+|+..++.+++ +|+.++ +.+++.|
T Consensus 177 dHA~~~v~mgl------------------------~Mi~aI--------------------------~~vr~at------ 200 (867)
T KOG3619|consen 177 DHAVCCVEMGL------------------------DMIKAI--------------------------KQVREAT------ 200 (867)
T ss_pred hHHHHHHHHHH------------------------HHHHHH--------------------------HHHHHHh------
Confidence 89999999999 888888 2222221
Q ss_pred HhhhHHhhhhcCCCCCCCCccccccccccceeEEeccccccchhhhhcccccccccchhH
Q psy7403 168 KRKCEELLYQLLPNCYQGPCVAGVVGLKMPRYCLFGDTVNTASRMESNGQALKIHVSPFT 227 (368)
Q Consensus 168 ~~~~~~Ll~~i~pgi~~G~v~~G~iG~~~~~~~lfgd~Vnfa~rles~~~~~~I~is~~~ 227 (368)
.-++ +||+|+|+|+|.+|++|.++|+|++||+.|..|.+||+.+.|+.||||+.|
T Consensus 201 ---~~dv--nmrvGihsG~Vl~GvlG~~kwq~DVws~dv~lAn~mEs~G~pgrVhis~~T 255 (867)
T KOG3619|consen 201 ---GVDV--NMRVGIHSGSVLCGVLGLRKWQYDVWSNDVTLANHMEAGGVPGRVHISKAT 255 (867)
T ss_pred ---CCCC--ceEEEEecCceeecccccceeeeeeccchhhhhhhhhhcCCCceeEechhH
Confidence 1234 999999999999999999999999999999999999999988666655544
No 5
>KOG1023|consensus
Probab=99.97 E-value=9.7e-32 Score=262.57 Aligned_cols=200 Identities=50% Similarity=0.723 Sum_probs=184.4
Q ss_pred ChhhHhhcCCcccccccCceEEEeeccCCchhhccCCChHHHHHHHHHHHHHHhhhhhcccceeEEEEeecceEEEeecc
Q psy7403 1 SVASQLILGQSVVAETYDSVTIYFSDIVGFTSLSAESTPLQVVELLNDLYTCFDSVIENFDVYKVIFVVLSEIYSISLAA 80 (368)
Q Consensus 1 ~i~~~l~~g~~~~~~~~~~vtilf~di~gft~ls~~~~~~~~~~~Ln~~f~~~~~~i~~~~~~~~~~~~~Gd~~~~~~~g 80 (368)
+||++|+.|....++.+.+|||+|+||+|||.++...+|-+++.+||++|+.||.++++|++||++++ ||+||+ ++|
T Consensus 278 ~VA~~lk~G~~v~pe~~~~vti~fsDiv~fT~l~~~~~P~~vv~~lNdlyt~Fd~ii~~~d~yKVeti--GDaYmv-vSg 354 (484)
T KOG1023|consen 278 SVAESLKLGKTVDPESFDSVTIYFSDIVGFTVLSSNSTPIQVVTLLNDLYTTFDRIIDKHDVYKVETI--GDAYMV-VSG 354 (484)
T ss_pred HHhhHhhcCCcCCccccCceeeeeHHHHHHHHHHhcCCCceeeeeccchHHhhhhcccccCCeeEecc--Ccceee-ccc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999 999999 999
Q ss_pred ccccccchhhHHHHHHHHhhhhHHHHHHHhhhhhHHHHHhHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q psy7403 81 LDYESNNILDNLLSRMEQYANNLEALVEERTADYLEEKRKCEELLYQLLPKDYESNNILDNLLSRMEQYANNLEALVEER 160 (368)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d~~~~~~e~~~~~L~~~~~~~ 160 (368)
+|..+...|...++.+++ .++..+
T Consensus 355 lp~~n~~~H~~eia~msl------------------------~~~~~~-------------------------------- 378 (484)
T KOG1023|consen 355 LPIRNGYRHAREIASMAL------------------------GLRSFL-------------------------------- 378 (484)
T ss_pred CceecHhHHHHHHHHHHH------------------------HHHHHH--------------------------------
Confidence 999987778999888888 555555
Q ss_pred HHHHHHHHhhhHHhhhhcCCCCCCCCccccccccccceeEEeccccccchhhhhcccccccccchhHHHHhhhccchhhh
Q psy7403 161 TADYLEEKRKCEELLYQLLPNCYQGPCVAGVVGLKMPRYCLFGDTVNTASRMESNGQALKIHVSPFTKEVLDTFGTFDLE 240 (368)
Q Consensus 161 t~~l~~e~~~~~~Ll~~i~pgi~~G~v~~G~iG~~~~~~~lfgd~Vnfa~rles~~~~~~I~is~~~~~l~~~~~~fd~~ 240 (368)
+.....+.+.+.+ ++|+|+|+|++.+|++|.+.|+|++|||+||+|+|||+.+. +.|++|+.++.++..+..|...
T Consensus 379 -~~f~i~H~P~~~l--~iRig~~sg~~~agVvgl~mPRYclFgDtvn~AsrMes~G~-~~i~~s~~~~~~l~~~~~~~~e 454 (484)
T KOG1023|consen 379 -ESFSLPHRPWEKL--RLRIGFHSGPVVAGVVGLKMPRYCLFGDTVNTASRMESNGK-LMIHLSEEAKNLLTERPQFETE 454 (484)
T ss_pred -hccCCCCCCchhh--heeeccccCCceecccccCCCcccchhhHHHHHhhhhhcCC-eEEEecHHHHHHHHhcCceeee
Confidence 4455566777777 99999999999999999999999999999999999999999 9999999999999766678888
Q ss_pred hhccccceeeeeecEEEEEecCC
Q psy7403 241 LRGEVEMKVETIGDAYMVVSGLP 263 (368)
Q Consensus 241 ~~~~~~~K~ktigd~Y~~~~g~p 263 (368)
.++....|||+...+||+.+..-
T Consensus 455 ~rG~v~~kgkg~~~t~wl~g~~~ 477 (484)
T KOG1023|consen 455 ERGLVELKGKGVMSTYWLLGESS 477 (484)
T ss_pred ccCcEEeecCceeeeEEeccCcc
Confidence 88988999999999999987653
No 6
>PF00211 Guanylate_cyc: Adenylate and Guanylate cyclase catalytic domain; InterPro: IPR001054 Guanylate cyclases (4.6.1.2 from EC) catalyse the formation of cyclic GMP (cGMP) from GTP. cGMP acts as an intracellular messenger, activating cGMP-dependent kinases and regulating cGMP-sensitive ion channels. The role of cGMP as a second messenger in vascular smooth muscle relaxation and retinal photo-transduction is well established. Guanylate cyclase is found both in the soluble and particulate fractions of eukaryotic cells. The soluble and plasma membrane-bound forms differ in structure, regulation and other properties [, , , ]. Most currently known plasma membrane-bound forms are receptors for small polypeptides. The soluble forms of guanylate cyclase are cytoplasmic heterodimers having alpha and beta subunits. In all characterised eukaryote guanylyl- and adenylyl cyclases, cyclic nucleotide synthesis is carried out by the conserved class III cyclase domain. ; GO: 0016849 phosphorus-oxygen lyase activity, 0009190 cyclic nucleotide biosynthetic process, 0035556 intracellular signal transduction; PDB: 3UVJ_A 1FX4_A 1WC4_B 2BW7_D 1WC1_A 1WC0_A 1WC3_A 1WC5_A 1WC6_A 3ET6_B ....
Probab=99.94 E-value=1.9e-27 Score=208.53 Aligned_cols=182 Identities=30% Similarity=0.419 Sum_probs=155.1
Q ss_pred cccccCceEEEeeccCCchhhccCCChHHHHHHHHHHHHHHhhhhhcccceeEEEEeecceEEEeeccccccccchhhHH
Q psy7403 13 VAETYDSVTIYFSDIVGFTSLSAESTPLQVVELLNDLYTCFDSVIENFDVYKVIFVVLSEIYSISLAALDYESNNILDNL 92 (368)
Q Consensus 13 ~~~~~~~vtilf~di~gft~ls~~~~~~~~~~~Ln~~f~~~~~~i~~~~~~~~~~~~~Gd~~~~~~~g~~~~~~~~~~~~ 92 (368)
+.+++++|||||+||+|||++++.++|+++..+||.+|..+++++.+|++++++++ ||++|+ +||.+... ..+...
T Consensus 2 ~~~~~~~vtvlf~di~~ft~l~~~~~~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~--Gd~~~~-~f~~~~~~-~~~~~~ 77 (184)
T PF00211_consen 2 YSEQYRNVTVLFADIVGFTDLTEQLDPEELVRLLNDFFSSLDRIVKQHGGEIIKFI--GDGVMA-VFGLPEPD-EDAAER 77 (184)
T ss_dssp EEEEEEEEEEEEEEETTHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEE--TTEEEE-EESSSSCH-CHHHHH
T ss_pred CccccCeEEEEEEEecCcHHHHHhCCchhHHHHHHHHHHHhhhccccccccccccc--cceeEE-Eecccccc-cccccc
Confidence 56789999999999999999999999999999999999999999999999999999 999999 99999544 356666
Q ss_pred HHHHHHhhhhHHHHHHHhhhhhHHHHHhHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q psy7403 93 LSRMEQYANNLEALVEERTADYLEEKRKCEELLYQLLPKDYESNNILDNLLSRMEQYANNLEALVEERTADYLEEKRKCE 172 (368)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d~~~~~~e~~~~~L~~~~~~~t~~l~~e~~~~~ 172 (368)
++++++ +++..+ +.+....
T Consensus 78 a~~~al------------------------~~~~~~---------------------------------~~~~~~~---- 96 (184)
T PF00211_consen 78 AVQFAL------------------------ALLEAL---------------------------------ERLNKES---- 96 (184)
T ss_dssp HHHHHH------------------------HHHHHH---------------------------------HHHHHHH----
T ss_pred cccccc------------------------chhhcc---------------------------------ccccccc----
Confidence 666666 444333 2222222
Q ss_pred HhhhhcCCCCCCCCccccccccccceeEEeccccccchhhhhcccccccccchhHHHHhhhccchhhhhhccccceeeee
Q psy7403 173 ELLYQLLPNCYQGPCVAGVVGLKMPRYCLFGDTVNTASRMESNGQALKIHVSPFTKEVLDTFGTFDLELRGEVEMKVETI 252 (368)
Q Consensus 173 ~Ll~~i~pgi~~G~v~~G~iG~~~~~~~lfgd~Vnfa~rles~~~~~~I~is~~~~~l~~~~~~fd~~~~~~~~~K~kti 252 (368)
...+++++|+|+|++..|.+|..++.|++||+.||.|+|+++.++++.|++|+.++..+.....|.+...+...+||+..
T Consensus 97 ~~~~~~rIGI~~G~v~~g~~G~~~~~~~v~G~~vn~Aarl~~~a~~~~i~vs~~v~~~l~~~~~~~~~~~g~~~lkG~~~ 176 (184)
T PF00211_consen 97 GPPLSVRIGIHTGPVVVGVVGSRRPEYDVFGDAVNIAARLESLAPPGQILVSEEVYDALNESDQFRFEELGRVELKGKGP 176 (184)
T ss_dssp HSS-EEEEEEEEEEEEEEEEESSSEEEEEESHHHHHHHHHHHTSSTTSEEEEHHHHHHHTTHTTEEEEEEEEEEETTSSE
T ss_pred ceeeeeeccccccccccccccCcccceeeeehhhhhhHHHHHhhcccccccCHHHHHHhcccCceEEEEeeeEEEecCCC
Confidence 12348999999999999999977778999999999999999999999999999999999854578888889999999988
Q ss_pred ecEEEEE
Q psy7403 253 GDAYMVV 259 (368)
Q Consensus 253 gd~Y~~~ 259 (368)
..+|++-
T Consensus 177 ~~~y~~~ 183 (184)
T PF00211_consen 177 VQTYQLN 183 (184)
T ss_dssp EEEEEEE
T ss_pred cEEEEEE
Confidence 8999874
No 7
>smart00044 CYCc Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes.
Probab=99.91 E-value=1.8e-24 Score=191.32 Aligned_cols=169 Identities=47% Similarity=0.668 Sum_probs=144.9
Q ss_pred ChhhHhhcCC-cccccccCceEEEeeccCCchhhccCCChHHHHHHHHHHHHHHhhhhhcccceeEEEEeecceEEEeec
Q psy7403 1 SVASQLILGQ-SVVAETYDSVTIYFSDIVGFTSLSAESTPLQVVELLNDLYTCFDSVIENFDVYKVIFVVLSEIYSISLA 79 (368)
Q Consensus 1 ~i~~~l~~g~-~~~~~~~~~vtilf~di~gft~ls~~~~~~~~~~~Ln~~f~~~~~~i~~~~~~~~~~~~~Gd~~~~~~~ 79 (368)
+|+++|..|. .....+++++||||+||+|||.+++..+++++..+||.+|..+.+++.+|||+++++. ||++|+ +|
T Consensus 17 ~v~~~l~~g~~~~~~~~~~~~tvlf~di~g~t~l~~~~~~~~~~~~l~~~~~~~~~~i~~~gg~v~~~~--Gd~~l~-~F 93 (194)
T smart00044 17 SVAESLKRGGSPVPAESYDNVTILFTDIVGFTTLSSEATPEQVVTLLNDLYSRFDRIIDRHGGYKVKTI--GDAYMV-VS 93 (194)
T ss_pred HHHHHHHhCCCCccccccCeEEEEEeEhhhhhhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCeEEEEEe--CCEEEE-EE
Confidence 4788999997 7788999999999999999999999999999999999999999999999999999999 999999 99
Q ss_pred cccccccchhhHHHHHHHHhhhhHHHHHHHhhhhhHHHHHhHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHH
Q psy7403 80 ALDYESNNILDNLLSRMEQYANNLEALVEERTADYLEEKRKCEELLYQLLPKDYESNNILDNLLSRMEQYANNLEALVEE 159 (368)
Q Consensus 80 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d~~~~~~e~~~~~L~~~~~~ 159 (368)
+.|......++..++.+++ ++...+
T Consensus 94 ~~~~~~~~~~a~~a~~~al------------------------~l~~~~------------------------------- 118 (194)
T smart00044 94 GLPTEALVDHAELAADEAL------------------------DMVESL------------------------------- 118 (194)
T ss_pred CCCCCcchHHHHHHHHHHH------------------------HHHHHH-------------------------------
Confidence 9987764456666666666 444433
Q ss_pred HHHHHHHHHhhhHHhhhhcCCCCCCCCccccccccccceeEEeccccccchhhhhcccccccccchhHHHHhh
Q psy7403 160 RTADYLEEKRKCEELLYQLLPNCYQGPCVAGVVGLKMPRYCLFGDTVNTASRMESNGQALKIHVSPFTKEVLD 232 (368)
Q Consensus 160 ~t~~l~~e~~~~~~Ll~~i~pgi~~G~v~~G~iG~~~~~~~lfgd~Vnfa~rles~~~~~~I~is~~~~~l~~ 232 (368)
..+.... ....+ .+++|+|+|++..|.+|...+.++++|+.||.|+|+++.+.+++|.+|+.+++.++
T Consensus 119 --~~~~~~~-~~~~l--~~riGih~G~v~~~~~g~~~~~~~~~G~~vn~AarL~~~a~~g~i~vs~~~~~~l~ 186 (194)
T smart00044 119 --KTVLSQH-RGNGL--RVRIGIHTGPVVAGVVGITMPRYCLFGDTVNLASRMESVGDPGQILVSEETYSLLR 186 (194)
T ss_pred --HHHHhhc-cCCCe--eEEEEEeccceEEEecCCCCceeEEeChHHHHHHHHHhcCCCCeEEECHHHHHHHH
Confidence 2222211 12334 89999999999999999877789999999999999999999999999999999985
No 8
>KOG3618|consensus
Probab=99.91 E-value=3.5e-25 Score=217.80 Aligned_cols=154 Identities=27% Similarity=0.418 Sum_probs=142.6
Q ss_pred cccCceEEEeeccCCchhhccCCChHHHHHHHHHHHHHHhhhhhcccceeEEEEeecceEEEeeccccccccchhhHHHH
Q psy7403 15 ETYDSVTIYFSDIVGFTSLSAESTPLQVVELLNDLYTCFDSVIENFDVYKVIFVVLSEIYSISLAALDYESNNILDNLLS 94 (368)
Q Consensus 15 ~~~~~vtilf~di~gft~ls~~~~~~~~~~~Ln~~f~~~~~~i~~~~~~~~~~~~~Gd~~~~~~~g~~~~~~~~~~~~~~ 94 (368)
..-.+|+|||+||+|||.+++.-++++++.+||++|.+||.+++-.|++|+.+. ||+|+| +.|.|.+. ++|+...+
T Consensus 336 ~~menVSILFADIvGFTkMSsnKsA~~LV~lLNDLFgRFD~LC~l~gcEKISTL--GDCYYC-VaGCPEPr-aDHA~ccv 411 (1318)
T KOG3618|consen 336 QQMENVSILFADIVGFTKMSSNKSAHALVGLLNDLFGRFDRLCELTGCEKISTL--GDCYYC-VAGCPEPR-ADHAYCCV 411 (1318)
T ss_pred hhhhhhhhhhhhhhchhhccccccHHHHHHHHHHHHHHHHHHHHhcCcchhccc--cceeee-ecCCCCCc-ccceeeeh
Confidence 456799999999999999999999999999999999999999999999999999 999999 99999987 48999999
Q ss_pred HHHHhhhhHHHHHHHhhhhhHHHHHhHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHh
Q psy7403 95 RMEQYANNLEALVEERTADYLEEKRKCEELLYQLLPKDYESNNILDNLLSRMEQYANNLEALVEERTADYLEEKRKCEEL 174 (368)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d~~~~~~e~~~~~L~~~~~~~t~~l~~e~~~~~~L 174 (368)
.|++ +|+.++ +++.++++. .+
T Consensus 412 EMGL------------------------gMI~Ai---------------------------------rqFd~~r~e--~V 432 (1318)
T KOG3618|consen 412 EMGL------------------------GMIKAI---------------------------------RQFDQERKE--MV 432 (1318)
T ss_pred hhcc------------------------hHHHHH---------------------------------HHHHHHhhc--cc
Confidence 9999 888888 666666554 34
Q ss_pred hhhcCCCCCCCCccccccccccceeEEeccccccchhhhhcccccccccchhHHHHhhh
Q psy7403 175 LYQLLPNCYQGPCVAGVVGLKMPRYCLFGDTVNTASRMESNGQALKIHVSPFTKEVLDT 233 (368)
Q Consensus 175 l~~i~pgi~~G~v~~G~iG~~~~~~~lfgd~Vnfa~rles~~~~~~I~is~~~~~l~~~ 233 (368)
+||.|+|+|.|.+|++|.++..|++|++.|+.|..||+.+.++++|||+++..+++.
T Consensus 433 --nMRVGvHTGtVlCGivGtrRfKFDVwSNDV~LAN~MEssGvag~VHiSeaTak~L~d 489 (1318)
T KOG3618|consen 433 --NMRVGVHTGTVLCGIVGTRRFKFDVWSNDVNLANLMESSGVAGKVHISEATAKYLDD 489 (1318)
T ss_pred --ceEEEEecceEEeeeeecceEeeeeccCcchHHHHHHhcCCCcceEeeHHHHHHhcc
Confidence 899999999999999999999999999999999999999999999999999998874
No 9
>COG2114 CyaA Adenylate cyclase, family 3 (some proteins contain HAMP domain) [Signal transduction mechanisms]
Probab=99.89 E-value=4.3e-23 Score=186.91 Aligned_cols=171 Identities=23% Similarity=0.211 Sum_probs=133.3
Q ss_pred CceEEEeeccCCchhhccCCChHHHHHHHHHHHHHHhhhhhcccceeEEEEeecceEEEeeccccccccchhhHHHHHHH
Q psy7403 18 DSVTIYFSDIVGFTSLSAESTPLQVVELLNDLYTCFDSVIENFDVYKVIFVVLSEIYSISLAALDYESNNILDNLLSRME 97 (368)
Q Consensus 18 ~~vtilf~di~gft~ls~~~~~~~~~~~Ln~~f~~~~~~i~~~~~~~~~~~~~Gd~~~~~~~g~~~~~~~~~~~~~~~~~ 97 (368)
+.+||||+||+|||.+++..+|+.+.++||.||..+..++.+|+|.++|++ ||++|+ +||.|.... .+.+++
T Consensus 45 ~~vtilfaDi~g~T~l~~~~~~~~~~~ll~~~~~~~~~~v~~~gG~v~k~i--GD~~la-~F~~p~~~~-----~A~~~a 116 (227)
T COG2114 45 RRVTLLFADIVGSTELSESLGDEALVELLNLYFDAVAEVVARHGGRVVKFI--GDGFLA-VFGRPSPLE-----DAVACA 116 (227)
T ss_pred ceEEEEEEeeccchHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEe--cceEEE-EeCCCCCcH-----HHHHHH
Confidence 799999999999999999999999999999999999999999999999999 999999 999988653 222222
Q ss_pred HhhhhHHHHHHHhhhhhHHHHHhHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhh
Q psy7403 98 QYANNLEALVEERTADYLEEKRKCEELLYQLLPKDYESNNILDNLLSRMEQYANNLEALVEERTADYLEEKRKCEELLYQ 177 (368)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d~~~~~~e~~~~~L~~~~~~~t~~l~~e~~~~~~Ll~~ 177 (368)
.- ...++.... +++ ... . +.
T Consensus 117 ~~--------------------~~~~~~~~~---------------------------------~~~---~~~--~--l~ 136 (227)
T COG2114 117 LD--------------------LQLALRNPL---------------------------------ARL---RRE--S--LR 136 (227)
T ss_pred HH--------------------HHHHHHHHH---------------------------------hhc---cCc--C--ee
Confidence 20 000111111 111 111 1 48
Q ss_pred cCCCCCCCCccccccccccceeEEeccccccchhhhhcccccccccchhHHHHhhhccchhhhhhccccceeeeee-cEE
Q psy7403 178 LLPNCYQGPCVAGVVGLKMPRYCLFGDTVNTASRMESNGQALKIHVSPFTKEVLDTFGTFDLELRGEVEMKVETIG-DAY 256 (368)
Q Consensus 178 i~pgi~~G~v~~G~iG~~~~~~~lfgd~Vnfa~rles~~~~~~I~is~~~~~l~~~~~~fd~~~~~~~~~K~ktig-d~Y 256 (368)
+++|+|+|+++.|.+|. |++|||+||+|+|||+.++|+.|.+|+.+++++.. ..+.+...+...+|+.... ..|
T Consensus 137 ~riGi~~G~vv~~~~g~----~~~~G~~VN~AaRLe~~a~~g~i~iS~~~~~~~~~-~~~~~~~~g~~~lkg~~~~~~v~ 211 (227)
T COG2114 137 VRIGIHTGEVVVGNTGG----YTVVGSAVNQAARLESLAKPGQVLLSEATYDLVRD-LVDLFSGLGSHRLKGLARPVRVY 211 (227)
T ss_pred EEEEEEeecEEEEeecC----eeEechHhHHHHHHHHhcCCCeEEEcHHHHHHHhh-hhhhhhcCCceecCCCCCceEEE
Confidence 99999999999998876 89999999999999999999999999999999874 1344555667777886544 455
Q ss_pred EEEec
Q psy7403 257 MVVSG 261 (368)
Q Consensus 257 ~~~~g 261 (368)
.+...
T Consensus 212 ~~~~~ 216 (227)
T COG2114 212 QLCHR 216 (227)
T ss_pred Eeccc
Confidence 44433
No 10
>KOG3618|consensus
Probab=99.86 E-value=1.4e-22 Score=199.67 Aligned_cols=193 Identities=21% Similarity=0.192 Sum_probs=153.9
Q ss_pred HHHHHHhhhHHhhhhcCCCCCCCCccccccccc-cc-eeEEeccccccchhhhhcccccccccchhHHHHhhhccchhhh
Q psy7403 163 DYLEEKRKCEELLYQLLPNCYQGPCVAGVVGLK-MP-RYCLFGDTVNTASRMESNGQALKIHVSPFTKEVLDTFGTFDLE 240 (368)
Q Consensus 163 ~l~~e~~~~~~Ll~~i~pgi~~G~v~~G~iG~~-~~-~~~lfgd~Vnfa~rles~~~~~~I~is~~~~~l~~~~~~fd~~ 240 (368)
+...-+...+.||.+|.|..++..++....-.+ .. .-++|..+|||....++.-..++ |...-||++.+.||..
T Consensus 1047 riQ~mrdQADwLL~NiIP~HvaE~LK~~~kYSeNH~~~gviFASIvNfnemYeEnyeGGk----EflRVLNElIGDFDEL 1122 (1318)
T KOG3618|consen 1047 RIQSMRDQADWLLRNIIPYHVAEQLKVSQKYSENHDSGGVIFASIVNFNEMYEENYEGGK----EFLRVLNELIGDFDEL 1122 (1318)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHhhccccccccCccceEEEEEeccHHHHHHHhhhchH----HHHHHHHHHhccHHHH
Confidence 334456677899999999988887765422211 11 26899999999988888766664 2345577777889887
Q ss_pred hhcc---ccceeeeeecEEEEEecCCCC------CCChhHHHHHHHHHHHHHHHhhcccCCCCCCcceEEEeecCCCcce
Q psy7403 241 LRGE---VEMKVETIGDAYMVVSGLPMR------NGNLHAREIARMSLALLDTVVTFTIRHRPTDQLKLRIGMHTGCRDK 311 (368)
Q Consensus 241 ~~~~---~~~K~ktigd~Y~~~~g~p~~------~~~~ha~~~~~~al~~~~~~~~~~~~~~~~~~l~iRIGihtG~v~~ 311 (368)
..+. .++|+||||.+||+++|+... .|..|-....+||++|++.+..||.. .-.-++.+|||+|-|||.+
T Consensus 1123 LsrPdf~~iEKIKTIG~tyMAASGLnp~~~~~~~hp~EHl~~l~eFa~amq~Vvd~FN~d-lL~Fnf~lrvG~NiGpvTA 1201 (1318)
T KOG3618|consen 1123 LSRPDFSSIEKIKTIGATYMAASGLNPAQAQDGSHPQEHLQILFEFAKAMQRVVDDFNND-LLWFNFKLRVGFNIGPVTA 1201 (1318)
T ss_pred hccccchhhHHHhhhhHHHHHhcCCChHHccCCCChHHHHHHHHHHHHHHHHHHHHhhhh-hhheeeeEEeeccccCccc
Confidence 6554 578999999999999999432 34568888999999999999999853 4457899999999999987
Q ss_pred ---------ecccCChHhHHHHHHcCCCCCceeecceeeeeecccCcccccCCCCccccccccccC
Q psy7403 312 ---------FRDQSSFVSVASQLILGQSVVAETYDSVTIYFSDIVGFTSLSAESTPELRGEVEMKE 368 (368)
Q Consensus 312 ---------~~~~gd~vn~A~rles~~~~~~~~~~~~t~~f~~~~~f~~~~~~~~~~~~~~~~~k~ 368 (368)
||+|||+||+||||.|++.+++|++++.++.|.-.+ |+ .++||.|+||.
T Consensus 1202 GVIGTtKLyYDIWGDtVNiASRMdsTGv~nRIQVs~~~~~~L~~r-Ye-------Fe~Rg~v~VKG 1259 (1318)
T KOG3618|consen 1202 GVIGTTKLYYDIWGDTVNIASRMDSTGVENRIQVSEESYRVLSKR-YE-------FEYRGTVNVKG 1259 (1318)
T ss_pred cccccceeeehhhcchhhhhhhccccCCcceeEecHHHHHHHHhh-cc-------ccccceEEEec
Confidence 999999999999999999999999999997664333 44 78999999984
No 11
>KOG3619|consensus
Probab=99.85 E-value=6.6e-22 Score=202.90 Aligned_cols=194 Identities=28% Similarity=0.486 Sum_probs=152.9
Q ss_pred CcccccccCceEEEeeccCCchhhccCCC----hHHHHHHHHHHHHHHhhhhh--cc-cceeEEEEeecceEEEeecccc
Q psy7403 10 QSVVAETYDSVTIYFSDIVGFTSLSAEST----PLQVVELLNDLYTCFDSVIE--NF-DVYKVIFVVLSEIYSISLAALD 82 (368)
Q Consensus 10 ~~~~~~~~~~vtilf~di~gft~ls~~~~----~~~~~~~Ln~~f~~~~~~i~--~~-~~~~~~~~~~Gd~~~~~~~g~~ 82 (368)
+..|++.|+.|.|||+-|-||.+...+.+ ..+-+++||++++.||+++. ++ +++|+|++ |-+||| ++|+.
T Consensus 641 ~eLY~qSy~~VgVMFASipnF~dFYsE~d~NneGlECLRlLNEIIaDFDeLL~~pkF~~IEKIKTI--GSTYMA-AsGL~ 717 (867)
T KOG3619|consen 641 EELYHQSYDCVGVMFASIPNFKDFYSECDVNNEGLECLRLLNEIIADFDELLSKPKFSGVEKIKTI--GSTYMA-ASGLN 717 (867)
T ss_pred HHHHHhhhceEEEEEEecCCcceeeeeecCCcccchHHHHHHHHHhhHHHhcCccccccceeEEEe--cchhhh-hhCCC
Confidence 78999999999999999999966655543 46889999999999999999 55 49999999 999999 99995
Q ss_pred ccccchhhHHHHHHHHhhhhHHHHHHHhhhhhHHHHHhHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7403 83 YESNNILDNLLSRMEQYANNLEALVEERTADYLEEKRKCEELLYQLLPKDYESNNILDNLLSRMEQYANNLEALVEERTA 162 (368)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d~~~~~~e~~~~~L~~~~~~~t~ 162 (368)
........+.. ....-+..|.+++..|...+++-+
T Consensus 718 ~~~~~~~~~~~--------------------------------------------~~~~h~~~l~eFAlal~~~L~~IN- 752 (867)
T KOG3619|consen 718 PTSAQENDQSL--------------------------------------------RQWSHLGALVEFALALMHKLDEIN- 752 (867)
T ss_pred hhhhhccCcch--------------------------------------------hHHhhHHHHHHHHHHHHHHHHhhh-
Confidence 44322221110 001112233444445544443332
Q ss_pred HHHHHHhhhHHhhhhcCCCCCCCCccccccccccceeEEeccccccchhhhhcccccccccchhHHHHhhhccchhhhhh
Q psy7403 163 DYLEEKRKCEELLYQLLPNCYQGPCVAGVVGLKMPRYCLFGDTVNTASRMESNGQALKIHVSPFTKEVLDTFGTFDLELR 242 (368)
Q Consensus 163 ~l~~e~~~~~~Ll~~i~pgi~~G~v~~G~iG~~~~~~~lfgd~Vnfa~rles~~~~~~I~is~~~~~l~~~~~~fd~~~~ 242 (368)
+.-... +++|+|++.|++++|++|.++|+|++||.+||.|+||+|++.++.|++++++..++..++ |.+.++
T Consensus 753 -----~~SfNn--F~LrIGin~GpvvAGVIGArKPqYDIWGNTVNvASRMdSTGv~g~IQVTEEt~~iL~~~g-y~~~~R 824 (867)
T KOG3619|consen 753 -----RHSFNN--FELRIGINHGPVVAGVIGARKPQYDIWGNTVNVASRMDSTGVPGRIQVTEETANILQGLG-YRFECR 824 (867)
T ss_pred -----HHhhcc--ceeeeceeccceeeeEecCCCCCccccccchhhhhcccccCCCCeEEecHHHHHHHhcCC-eeEEec
Confidence 111122 378999999999999999999999999999999999999999999999999999998864 889999
Q ss_pred ccccceeeeeecEEEEE
Q psy7403 243 GEVEMKVETIGDAYMVV 259 (368)
Q Consensus 243 ~~~~~K~ktigd~Y~~~ 259 (368)
+.+.+|||+...||++-
T Consensus 825 G~i~VKGkGel~Tyfl~ 841 (867)
T KOG3619|consen 825 GVINVKGKGELETYFLC 841 (867)
T ss_pred ceEEEecccceeEEEec
Confidence 99999999999999997
No 12
>cd07302 CHD cyclase homology domain. Catalytic domains of the mononucleotidyl cyclases (MNC's), also called cyclase homology domains (CHDs), are part of the class III nucleotidyl cyclases. This class includes eukaryotic and prokaryotic adenylate cyclases (AC's) and guanylate cyclases (GC's). They seem to share a common catalytic mechanism in their requirement for two magnesium ions to bind the polyphosphate moiety of the nucleotide.
Probab=99.85 E-value=4e-21 Score=166.15 Aligned_cols=168 Identities=36% Similarity=0.458 Sum_probs=138.6
Q ss_pred ceEEEeeccCCchhhccCCChHHHHHHHHHHHHHHhhhhhcccceeEEEEeecceEEEeeccccccccchhhHHHHHHHH
Q psy7403 19 SVTIYFSDIVGFTSLSAESTPLQVVELLNDLYTCFDSVIENFDVYKVIFVVLSEIYSISLAALDYESNNILDNLLSRMEQ 98 (368)
Q Consensus 19 ~vtilf~di~gft~ls~~~~~~~~~~~Ln~~f~~~~~~i~~~~~~~~~~~~~Gd~~~~~~~g~~~~~~~~~~~~~~~~~~ 98 (368)
++||+|+||+|||.+++..+++++..++|.++..+++++.+|++++.++. ||++++ +|+.+... ..+...++++|+
T Consensus 1 ~~~il~~di~~~t~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~~--gd~~~~-~f~~~~~~-~~~~~~A~~~a~ 76 (177)
T cd07302 1 EVTVLFADIVGFTALSERLGPEELVELLNEYFSAFDEIIERHGGTVDKTI--GDAVMA-VFGLPGAH-EDHAERAVRAAL 76 (177)
T ss_pred CEEEEEEEccChHHHHhcCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEe--CceEEE-EeCCCCCc-hhHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999 999999 99988764 356777777777
Q ss_pred hhhhHHHHHHHhhhhhHHHHHhHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhc
Q psy7403 99 YANNLEALVEERTADYLEEKRKCEELLYQLLPKDYESNNILDNLLSRMEQYANNLEALVEERTADYLEEKRKCEELLYQL 178 (368)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d~~~~~~e~~~~~L~~~~~~~t~~l~~e~~~~~~Ll~~i 178 (368)
+++..+ ..+......... ..+
T Consensus 77 ------------------------~i~~~~---------------------------------~~~~~~~~~~~~--~~~ 97 (177)
T cd07302 77 ------------------------EMQEAL---------------------------------AELNAEREGGPP--LRL 97 (177)
T ss_pred ------------------------HHHHHH---------------------------------HHHhhcccCCCC--eEE
Confidence 555555 222222122223 489
Q ss_pred CCCCCCCCccccccccccceeEEeccccccchhhhhcccccccccchhHHHHhhhccchhhhhhccccceee
Q psy7403 179 LPNCYQGPCVAGVVGLKMPRYCLFGDTVNTASRMESNGQALKIHVSPFTKEVLDTFGTFDLELRGEVEMKVE 250 (368)
Q Consensus 179 ~pgi~~G~v~~G~iG~~~~~~~lfgd~Vnfa~rles~~~~~~I~is~~~~~l~~~~~~fd~~~~~~~~~K~k 250 (368)
++|+|+|++..|.+|...+.++++|+.+|.|+||++.+++++|++|+.+++.+... .|.....+...+|+.
T Consensus 98 riGi~~G~~~~g~~g~~~~~~~~~G~~v~~A~rl~~~a~~~~i~vs~~~~~~l~~~-~~~~~~~~~~~l~~~ 168 (177)
T cd07302 98 RIGIHTGPVVAGVVGSERPEYTVIGDTVNLAARLESLAKPGQILVSEATYELLGDA-GFEFEELGEVELKGK 168 (177)
T ss_pred EEEEecceEEEEecCCCCcceeEecchHhHHHHHHhcCCCCEEEECHHHHHhhccC-ceEEEEeCCEEecCC
Confidence 99999999999999988777999999999999999999999999999999988742 355555555555554
No 13
>PF00211 Guanylate_cyc: Adenylate and Guanylate cyclase catalytic domain; InterPro: IPR001054 Guanylate cyclases (4.6.1.2 from EC) catalyse the formation of cyclic GMP (cGMP) from GTP. cGMP acts as an intracellular messenger, activating cGMP-dependent kinases and regulating cGMP-sensitive ion channels. The role of cGMP as a second messenger in vascular smooth muscle relaxation and retinal photo-transduction is well established. Guanylate cyclase is found both in the soluble and particulate fractions of eukaryotic cells. The soluble and plasma membrane-bound forms differ in structure, regulation and other properties [, , , ]. Most currently known plasma membrane-bound forms are receptors for small polypeptides. The soluble forms of guanylate cyclase are cytoplasmic heterodimers having alpha and beta subunits. In all characterised eukaryote guanylyl- and adenylyl cyclases, cyclic nucleotide synthesis is carried out by the conserved class III cyclase domain. ; GO: 0016849 phosphorus-oxygen lyase activity, 0009190 cyclic nucleotide biosynthetic process, 0035556 intracellular signal transduction; PDB: 3UVJ_A 1FX4_A 1WC4_B 2BW7_D 1WC1_A 1WC0_A 1WC3_A 1WC5_A 1WC6_A 3ET6_B ....
Probab=99.79 E-value=6.2e-20 Score=160.78 Aligned_cols=154 Identities=24% Similarity=0.275 Sum_probs=129.4
Q ss_pred eeEEeccccccchhhhhcccccccccchhHHHHhhhccchhhhhhccccceeeeeecEEEEEecCCCCCCChhHHHHHHH
Q psy7403 198 RYCLFGDTVNTASRMESNGQALKIHVSPFTKEVLDTFGTFDLELRGEVEMKVETIGDAYMVVSGLPMRNGNLHAREIARM 277 (368)
Q Consensus 198 ~~~lfgd~Vnfa~rles~~~~~~I~is~~~~~l~~~~~~fd~~~~~~~~~K~ktigd~Y~~~~g~p~~~~~~ha~~~~~~ 277 (368)
.+++|.|++||+...+... + .+.+..++..+..++.....+...+.+++||+||+++|.|.+. .+|+..++.+
T Consensus 9 vtvlf~di~~ft~l~~~~~-~-----~~~~~~l~~~~~~~~~~v~~~~g~~~~~~Gd~~~~~f~~~~~~-~~~~~~a~~~ 81 (184)
T PF00211_consen 9 VTVLFADIVGFTDLTEQLD-P-----EELVRLLNDFFSSLDRIVKQHGGEIIKFIGDGVMAVFGLPEPD-EDAAERAVQF 81 (184)
T ss_dssp EEEEEEEETTHHHHHHHSH-H-----HHHHHHHHHHHHHHHHHHHHTTEEEEEEETTEEEEEESSSSCH-CHHHHHHHHH
T ss_pred EEEEEEEecCcHHHHHhCC-c-----hhHHHHHHHHHHHhhhccccccccccccccceeEEEecccccc-cccccccccc
Confidence 4899999999998776543 2 2334556677777888888888899999999999999999776 6899999999
Q ss_pred HHHHHHHHhhcccCCCCCCcceEEEeecCCCcce---------ecccCChHhHHHHHHcCCCCCceeecceeeeeecccC
Q psy7403 278 SLALLDTVVTFTIRHRPTDQLKLRIGMHTGCRDK---------FRDQSSFVSVASQLILGQSVVAETYDSVTIYFSDIVG 348 (368)
Q Consensus 278 al~~~~~~~~~~~~~~~~~~l~iRIGihtG~v~~---------~~~~gd~vn~A~rles~~~~~~~~~~~~t~~f~~~~~ 348 (368)
|+++++.+..++... ..++++|||||+|++.. |++||+.||.|+||++.+.++.+++++.+
T Consensus 82 al~~~~~~~~~~~~~--~~~~~~rIGI~~G~v~~g~~G~~~~~~~v~G~~vn~Aarl~~~a~~~~i~vs~~v-------- 151 (184)
T PF00211_consen 82 ALALLEALERLNKES--GPPLSVRIGIHTGPVVVGVVGSRRPEYDVFGDAVNIAARLESLAPPGQILVSEEV-------- 151 (184)
T ss_dssp HHHHHHHHHHHHHHH--HSS-EEEEEEEEEEEEEEEEESSSEEEEEESHHHHHHHHHHHTSSTTSEEEEHHH--------
T ss_pred ccchhhccccccccc--ceeeeeeccccccccccccccCcccceeeeehhhhhhHHHHHhhcccccccCHHH--------
Confidence 999999998887543 57899999999999866 89999999999999999999999999999
Q ss_pred ccccc--CCCCccccccccccC
Q psy7403 349 FTSLS--AESTPELRGEVEMKE 368 (368)
Q Consensus 349 f~~~~--~~~~~~~~~~~~~k~ 368 (368)
|..+. ..+..+++|++.+|.
T Consensus 152 ~~~l~~~~~~~~~~~g~~~lkG 173 (184)
T PF00211_consen 152 YDALNESDQFRFEELGRVELKG 173 (184)
T ss_dssp HHHHTTHTTEEEEEEEEEEETT
T ss_pred HHHhcccCceEEEEeeeEEEec
Confidence 55555 566688999999874
No 14
>smart00044 CYCc Adenylyl- / guanylyl cyclase, catalytic domain. Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes.
Probab=99.73 E-value=4.5e-18 Score=150.39 Aligned_cols=171 Identities=29% Similarity=0.286 Sum_probs=134.3
Q ss_pred HHhhhHHhhhhcCCCCCCCCccccc-c---ccccceeEEeccccccchhhhhcccccccccchhHHHHhhhccchhhhhh
Q psy7403 167 EKRKCEELLYQLLPNCYQGPCVAGV-V---GLKMPRYCLFGDTVNTASRMESNGQALKIHVSPFTKEVLDTFGTFDLELR 242 (368)
Q Consensus 167 e~~~~~~Ll~~i~pgi~~G~v~~G~-i---G~~~~~~~lfgd~Vnfa~rles~~~~~~I~is~~~~~l~~~~~~fd~~~~ 242 (368)
|+++..+|+.+++|.....++..|. . +..+..+++|.|+++|+...++..+ . +....++..+..+.....
T Consensus 2 ~~~~~~~ll~~~lP~~v~~~l~~g~~~~~~~~~~~~tvlf~di~g~t~l~~~~~~-~-----~~~~~l~~~~~~~~~~i~ 75 (194)
T smart00044 2 EKRKTDRLLDQLLPASVAESLKRGGSPVPAESYDNVTILFTDIVGFTTLSSEATP-E-----QVVTLLNDLYSRFDRIID 75 (194)
T ss_pred hHHHHHHHHHHhCCHHHHHHHHhCCCCccccccCeEEEEEeEhhhhhhhhhhCCH-H-----HHHHHHHHHHHHHHHHHH
Confidence 4455667778888887766666653 1 2223348999999999986655432 2 223344555556777777
Q ss_pred ccccceeeeeecEEEEEecCCCCCCChhHHHHHHHHHHHHHHHhhcccCCCCCCcceEEEeecCCCcce---------ec
Q psy7403 243 GEVEMKVETIGDAYMVVSGLPMRNGNLHAREIARMSLALLDTVVTFTIRHRPTDQLKLRIGMHTGCRDK---------FR 313 (368)
Q Consensus 243 ~~~~~K~ktigd~Y~~~~g~p~~~~~~ha~~~~~~al~~~~~~~~~~~~~~~~~~l~iRIGihtG~v~~---------~~ 313 (368)
.+..+..+++||++|+++|.|.....+|+.+++.++++++..+..++.+. +..++++|||||||++.. |+
T Consensus 76 ~~gg~v~~~~Gd~~l~~F~~~~~~~~~~a~~a~~~al~l~~~~~~~~~~~-~~~~l~~riGih~G~v~~~~~g~~~~~~~ 154 (194)
T smart00044 76 RHGGYKVKTIGDAYMVVSGLPTEALVDHAELAADEALDMVESLKTVLSQH-RGNGLRVRIGIHTGPVVAGVVGITMPRYC 154 (194)
T ss_pred hcCeEEEEEeCCEEEEEECCCCCcchHHHHHHHHHHHHHHHHHHHHHhhc-cCCCeeEEEEEeccceEEEecCCCCceeE
Confidence 88888999999999999999988744899999999999999998887543 467899999999999855 78
Q ss_pred ccCChHhHHHHHHcCCCCCceeecceeeeee
Q psy7403 314 DQSSFVSVASQLILGQSVVAETYDSVTIYFS 344 (368)
Q Consensus 314 ~~gd~vn~A~rles~~~~~~~~~~~~t~~f~ 344 (368)
.+|+.||+|+||++...++.+.+|+.+....
T Consensus 155 ~~G~~vn~AarL~~~a~~g~i~vs~~~~~~l 185 (194)
T smart00044 155 LFGDTVNLASRMESVGDPGQILVSEETYSLL 185 (194)
T ss_pred EeChHHHHHHHHHhcCCCCeEEECHHHHHHH
Confidence 9999999999999999999999999995543
No 15
>COG2114 CyaA Adenylate cyclase, family 3 (some proteins contain HAMP domain) [Signal transduction mechanisms]
Probab=99.73 E-value=2.1e-17 Score=149.78 Aligned_cols=153 Identities=22% Similarity=0.169 Sum_probs=114.6
Q ss_pred cceeEEeccccccchhhhhcccccccccchhHHHHhhhccchhhhhhccccceeeeeecEEEEEecCCCCCCChhHHHHH
Q psy7403 196 MPRYCLFGDTVNTASRMESNGQALKIHVSPFTKEVLDTFGTFDLELRGEVEMKVETIGDAYMVVSGLPMRNGNLHAREIA 275 (368)
Q Consensus 196 ~~~~~lfgd~Vnfa~rles~~~~~~I~is~~~~~l~~~~~~fd~~~~~~~~~K~ktigd~Y~~~~g~p~~~~~~ha~~~~ 275 (368)
+..+++|+|+++||..++...+.. + +..++..+..+......+.....|++||++|+++|.|.+.+ +|.+++
T Consensus 45 ~~vtilfaDi~g~T~l~~~~~~~~-~-----~~ll~~~~~~~~~~v~~~gG~v~k~iGD~~la~F~~p~~~~--~A~~~a 116 (227)
T COG2114 45 RRVTLLFADIVGSTELSESLGDEA-L-----VELLNLYFDAVAEVVARHGGRVVKFIGDGFLAVFGRPSPLE--DAVACA 116 (227)
T ss_pred ceEEEEEEeeccchHHhhhCCHHH-H-----HHHHHHHHHHHHHHHHHcCCEEEEEecceEEEEeCCCCCcH--HHHHHH
Confidence 446999999999998777654322 1 22344445566777788888889999999999999999884 666666
Q ss_pred H-HHHHHHHHHhhcccCCCCCCcceEEEeecCCCcce-----ecccCChHhHHHHHHcCCCCCceeecceeeeeecccCc
Q psy7403 276 R-MSLALLDTVVTFTIRHRPTDQLKLRIGMHTGCRDK-----FRDQSSFVSVASQLILGQSVVAETYDSVTIYFSDIVGF 349 (368)
Q Consensus 276 ~-~al~~~~~~~~~~~~~~~~~~l~iRIGihtG~v~~-----~~~~gd~vn~A~rles~~~~~~~~~~~~t~~f~~~~~f 349 (368)
. ..++|.+....++.+ .+++|||||||+++. |+.+|++||+|+|||+..+++.+.+|..|+.....
T Consensus 117 ~~~~~~~~~~~~~~~~~-----~l~~riGi~~G~vv~~~~g~~~~~G~~VN~AaRLe~~a~~g~i~iS~~~~~~~~~--- 188 (227)
T COG2114 117 LDLQLALRNPLARLRRE-----SLRVRIGIHTGEVVVGNTGGYTVVGSAVNQAARLESLAKPGQVLLSEATYDLVRD--- 188 (227)
T ss_pred HHHHHHHHHHHhhccCc-----CeeEEEEEEeecEEEEeecCeeEechHhHHHHHHHHhcCCCeEEEcHHHHHHHhh---
Confidence 5 577788777766532 199999999999988 58999999999999999999999999999443321
Q ss_pred ccccCCCCccccccccccC
Q psy7403 350 TSLSAESTPELRGEVEMKE 368 (368)
Q Consensus 350 ~~~~~~~~~~~~~~~~~k~ 368 (368)
........|++.+|+
T Consensus 189 ----~~~~~~~~g~~~lkg 203 (227)
T COG2114 189 ----LVDLFSGLGSHRLKG 203 (227)
T ss_pred ----hhhhhhcCCceecCC
Confidence 122233446666663
No 16
>cd07302 CHD cyclase homology domain. Catalytic domains of the mononucleotidyl cyclases (MNC's), also called cyclase homology domains (CHDs), are part of the class III nucleotidyl cyclases. This class includes eukaryotic and prokaryotic adenylate cyclases (AC's) and guanylate cyclases (GC's). They seem to share a common catalytic mechanism in their requirement for two magnesium ions to bind the polyphosphate moiety of the nucleotide.
Probab=99.66 E-value=4.5e-16 Score=134.43 Aligned_cols=156 Identities=27% Similarity=0.293 Sum_probs=125.7
Q ss_pred eeEEeccccccchhhhhcccccccccchhHHHHhhhccchhhhhhccccceeeeeecEEEEEecCCCCCCChhHHHHHHH
Q psy7403 198 RYCLFGDTVNTASRMESNGQALKIHVSPFTKEVLDTFGTFDLELRGEVEMKVETIGDAYMVVSGLPMRNGNLHAREIARM 277 (368)
Q Consensus 198 ~~~lfgd~Vnfa~rles~~~~~~I~is~~~~~l~~~~~~fd~~~~~~~~~K~ktigd~Y~~~~g~p~~~~~~ha~~~~~~ 277 (368)
.+++|.|+++|+...+...+ . +....++..+..++.....+..++.++.||.|+++++.|... .+++.+++.+
T Consensus 2 ~~il~~di~~~t~~~~~~~~-~-----~~~~~l~~~~~~~~~~~~~~~g~~~~~~gd~~~~~f~~~~~~-~~~~~~A~~~ 74 (177)
T cd07302 2 VTVLFADIVGFTALSERLGP-E-----ELVELLNEYFSAFDEIIERHGGTVDKTIGDAVMAVFGLPGAH-EDHAERAVRA 74 (177)
T ss_pred EEEEEEEccChHHHHhcCCH-H-----HHHHHHHHHHHHHHHHHHHcCCEEEEEeCceEEEEeCCCCCc-hhHHHHHHHH
Confidence 36899999999987765422 1 123345555566777777888899999999999999999887 6899999999
Q ss_pred HHHHHHHHhhcccCCCCCCcceEEEeecCCCcce---------ecccCChHhHHHHHHcCCCCCceeecceeeeeecccC
Q psy7403 278 SLALLDTVVTFTIRHRPTDQLKLRIGMHTGCRDK---------FRDQSSFVSVASQLILGQSVVAETYDSVTIYFSDIVG 348 (368)
Q Consensus 278 al~~~~~~~~~~~~~~~~~~l~iRIGihtG~v~~---------~~~~gd~vn~A~rles~~~~~~~~~~~~t~~f~~~~~ 348 (368)
|+++++.+..++.+......+.+|||||+|++.. |+.+|+.||.|+||++.++++.+.+++.+
T Consensus 75 a~~i~~~~~~~~~~~~~~~~~~~riGi~~G~~~~g~~g~~~~~~~~~G~~v~~A~rl~~~a~~~~i~vs~~~-------- 146 (177)
T cd07302 75 ALEMQEALAELNAEREGGPPLRLRIGIHTGPVVAGVVGSERPEYTVIGDTVNLAARLESLAKPGQILVSEAT-------- 146 (177)
T ss_pred HHHHHHHHHHHhhcccCCCCeEEEEEEecceEEEEecCCCCcceeEecchHhHHHHHHhcCCCCEEEECHHH--------
Confidence 9999999999875544568999999999999865 88899999999999999999999999999
Q ss_pred cccccC-CCCccccccccccC
Q psy7403 349 FTSLSA-ESTPELRGEVEMKE 368 (368)
Q Consensus 349 f~~~~~-~~~~~~~~~~~~k~ 368 (368)
|..+.. .+...+.|.+.+|.
T Consensus 147 ~~~l~~~~~~~~~~~~~~l~~ 167 (177)
T cd07302 147 YELLGDAGFEFEELGEVELKG 167 (177)
T ss_pred HHhhccCceEEEEeCCEEecC
Confidence 444444 44466667777663
No 17
>cd07556 Nucleotidyl_cyc_III Class III nucleotidyl cyclases. Class III nucleotidyl cyclases are the largest, most diverse group of nucleotidyl cyclases (NC's) containing prokaryotic and eukaryotic proteins. They can be divided into two major groups; the mononucleotidyl cyclases (MNC's) and the diguanylate cyclases (DGC's). The MNC's, which include the adenylate cyclases (AC's) and the guanylate cyclases (GC's), have a conserved cyclase homology domain (CHD), while the DGC's have a conserved GGDEF domain, named after a conserved motif within this subgroup. Their products, cyclic guanylyl and adenylyl nucleotides, are second messengers that play important roles in eukaryotic signal transduction and prokaryotic sensory pathways.
Probab=98.31 E-value=2.9e-06 Score=69.10 Aligned_cols=132 Identities=32% Similarity=0.464 Sum_probs=93.6
Q ss_pred ceEEEeeccCCchhhccCCChHHHHHHHHHHHHHHhhhhhcccceeEEEEeecceEEEeeccccccccchhhHHHHHHHH
Q psy7403 19 SVTIYFSDIVGFTSLSAESTPLQVVELLNDLYTCFDSVIENFDVYKVIFVVLSEIYSISLAALDYESNNILDNLLSRMEQ 98 (368)
Q Consensus 19 ~vtilf~di~gft~ls~~~~~~~~~~~Ln~~f~~~~~~i~~~~~~~~~~~~~Gd~~~~~~~g~~~~~~~~~~~~~~~~~~ 98 (368)
.++++|.||.+|+.+++..+.+...++|..+...+.+.+..+++...++. ||.+++ ++.. . ....+..++.
T Consensus 1 ~~~ll~i~i~~~~~i~~~~g~~~~~~~l~~~~~~l~~~~~~~~~~~~r~~--~d~f~~-l~~~--~----~~~~~~~~~~ 71 (133)
T cd07556 1 PVTILFADIVGFTSLADALGPDEGDELLNELAGRFDSLIRRSGDLKIKTI--GDEFMV-VSGL--D----HPAAAVAFAE 71 (133)
T ss_pred CEEEEEEEchhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHcCcEEEEee--cceEEE-EECc--h----HHHHHHHHHH
Confidence 36899999999999999999999999999999999999999888888888 999999 5432 1 1111111111
Q ss_pred hhhhHHHHHHHhhhhhHHHHHhHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhc
Q psy7403 99 YANNLEALVEERTADYLEEKRKCEELLYQLLPKDYESNNILDNLLSRMEQYANNLEALVEERTADYLEEKRKCEELLYQL 178 (368)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d~~~~~~e~~~~~L~~~~~~~t~~l~~e~~~~~~Ll~~i 178 (368)
.+...+ .... ...... ..+
T Consensus 72 ------------------------~i~~~~---------------------------------~~~~--~~~~~~--~~~ 90 (133)
T cd07556 72 ------------------------DMREAV---------------------------------SALN--QSEGNP--VRV 90 (133)
T ss_pred ------------------------HHHHHH---------------------------------HHHH--hccCCc--eEE
Confidence 111111 0000 001122 267
Q ss_pred CCCCCCCCccccccccccceeEEeccccccchhhhhccccccc
Q psy7403 179 LPNCYQGPCVAGVVGLKMPRYCLFGDTVNTASRMESNGQALKI 221 (368)
Q Consensus 179 ~pgi~~G~v~~G~iG~~~~~~~lfgd~Vnfa~rles~~~~~~I 221 (368)
.+|++.|.+..+..|. ++.+..+++.++.|.++...+++++|
T Consensus 91 ~ig~~~g~~~~~~~~~-~~~~~~~~~~~~~a~~a~~~a~~~~i 132 (133)
T cd07556 91 RIGIHTGPVVVGVIGS-RPQYDVWGALVNLASRMESQAKAGQV 132 (133)
T ss_pred EEEEecccEEEEeccC-CccceEEcHHHHHHHHHHhcCCCCCc
Confidence 7888999887776665 55678899999999998888877655
No 18
>cd07556 Nucleotidyl_cyc_III Class III nucleotidyl cyclases. Class III nucleotidyl cyclases are the largest, most diverse group of nucleotidyl cyclases (NC's) containing prokaryotic and eukaryotic proteins. They can be divided into two major groups; the mononucleotidyl cyclases (MNC's) and the diguanylate cyclases (DGC's). The MNC's, which include the adenylate cyclases (AC's) and the guanylate cyclases (GC's), have a conserved cyclase homology domain (CHD), while the DGC's have a conserved GGDEF domain, named after a conserved motif within this subgroup. Their products, cyclic guanylyl and adenylyl nucleotides, are second messengers that play important roles in eukaryotic signal transduction and prokaryotic sensory pathways.
Probab=96.78 E-value=0.01 Score=47.86 Aligned_cols=121 Identities=28% Similarity=0.378 Sum_probs=75.2
Q ss_pred eEEeccccccchhhhhcccccccccchhHHHHhhh-ccchhhhhhccccceeeeeecEEEEEecCCCCCCChhHHHHHHH
Q psy7403 199 YCLFGDTVNTASRMESNGQALKIHVSPFTKEVLDT-FGTFDLELRGEVEMKVETIGDAYMVVSGLPMRNGNLHAREIARM 277 (368)
Q Consensus 199 ~~lfgd~Vnfa~rles~~~~~~I~is~~~~~l~~~-~~~fd~~~~~~~~~K~ktigd~Y~~~~g~p~~~~~~ha~~~~~~ 277 (368)
..++-|+.+|....+..+.... .+++.. ...+......+....++..+|.|+++... ....++..+
T Consensus 3 ~ll~i~i~~~~~i~~~~g~~~~-------~~~l~~~~~~l~~~~~~~~~~~~r~~~d~f~~l~~~------~~~~~~~~~ 69 (133)
T cd07556 3 TILFADIVGFTSLADALGPDEG-------DELLNELAGRFDSLIRRSGDLKIKTIGDEFMVVSGL------DHPAAAVAF 69 (133)
T ss_pred EEEEEEchhhHHHHhcCCHHHH-------HHHHHHHHHHHHHHHHHcCcEEEEeecceEEEEECc------hHHHHHHHH
Confidence 3567777777765544332111 111111 11233333332344567889999998642 234566677
Q ss_pred HHHHHHHHhhcccCCCCCCcceEEEeecCCCccee--------cccCChHhHHHHHHcCCCCCce
Q psy7403 278 SLALLDTVVTFTIRHRPTDQLKLRIGMHTGCRDKF--------RDQSSFVSVASQLILGQSVVAE 334 (368)
Q Consensus 278 al~~~~~~~~~~~~~~~~~~l~iRIGihtG~v~~~--------~~~gd~vn~A~rles~~~~~~~ 334 (368)
+..+.+.+...... ....+.++||+|.|++..- ..+++.+|.|+++.+..+++.+
T Consensus 70 ~~~i~~~~~~~~~~--~~~~~~~~ig~~~g~~~~~~~~~~~~~~~~~~~~~~a~~a~~~a~~~~i 132 (133)
T cd07556 70 AEDMREAVSALNQS--EGNPVRVRIGIHTGPVVVGVIGSRPQYDVWGALVNLASRMESQAKAGQV 132 (133)
T ss_pred HHHHHHHHHHHHhc--cCCceEEEEEEecccEEEEeccCCccceEEcHHHHHHHHHHhcCCCCCc
Confidence 77777776655321 3456889999999987653 4689999999999988877654
No 19
>PF05165 GGDN: GGDN family; InterPro: IPR007839 GTP cyclohydrolase III catalyses the formation of 2-amino-5-formylamino-6- ribofuranosylamino-4(3H)-pyrimidinone ribonucleotide monophosphate and inorganic phosphate from GTP. The enzyme also has an independent pyrophosphate phosphohydrolase activity. The proteins are 200-270 amino acids in length.; GO: 0003933 GTP cyclohydrolase activity, 0009058 biosynthetic process; PDB: 2QV6_B.
Probab=90.55 E-value=0.89 Score=41.22 Aligned_cols=60 Identities=18% Similarity=0.216 Sum_probs=48.6
Q ss_pred cCceEEEeeccCCch-hhccCCChHHHHHHHHHHHHHHhhhhhcccceeEEEEeecceEEEeec
Q psy7403 17 YDSVTIYFSDIVGFT-SLSAESTPLQVVELLNDLYTCFDSVIENFDVYKVIFVVLSEIYSISLA 79 (368)
Q Consensus 17 ~~~vtilf~di~gft-~ls~~~~~~~~~~~Ln~~f~~~~~~i~~~~~~~~~~~~~Gd~~~~~~~ 79 (368)
-..|+|...||.++| .++...+|-+....+.+++..+.+.+.+||+--.=.- ||-+|+ ++
T Consensus 125 d~~v~iAH~DI~d~T~~~Td~~~~ydt~~~I~~l~~~l~~~~~~~G~L~fylG--GDNi~~-v~ 185 (246)
T PF05165_consen 125 DGYVQIAHFDINDSTGTYTDEESPYDTYLEIEDLYAKLMKYLEKYGSLAFYLG--GDNIMA-VC 185 (246)
T ss_dssp S--EEEEEEEETTHHHHTTTTS-HHHHHHHHHHHHHHHHHHHHTTT---EEEE--TTEEEE-E-
T ss_pred CCceEEEEEeeeccchhhhcccChHHHHHHHHHHHHHHHHHHHhcCCEEEEec--CceEEE-EC
Confidence 467999999999999 9999999999999999999999999999997666556 999999 54
No 20
>PF07701 HNOBA: Heme NO binding associated; InterPro: IPR011645 The HNOBA (Haem NO Binding) domain is found associated with the HNOB domain and IPR001054 from INTERPRO in soluble cyclases and signalling proteins. The HNOB domain is predicted to function as a haem-dependent sensor for gaseous ligands, and transduce diverse downstream signals in both bacteria and animals.; GO: 0004383 guanylate cyclase activity, 0006182 cGMP biosynthetic process; PDB: 2P04_B 2P08_A 3HLS_E.
Probab=89.68 E-value=0.25 Score=44.38 Aligned_cols=40 Identities=38% Similarity=0.609 Sum_probs=28.8
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhHHhhhhcCCCCCC
Q psy7403 141 NLLSRME-QYANNLEALVEERTADYLEEKRKCEELLYQLLPNCYQ 184 (368)
Q Consensus 141 ~~~~~~e-~~~~~L~~~~~~~t~~l~~e~~~~~~Ll~~i~pgi~~ 184 (368)
.+..++| +...+|+ +.++++.+||++++.||++|+|..++
T Consensus 176 ~l~~~le~~~~~~Le----~~~~~l~~ek~ktd~LL~~mlP~~VA 216 (219)
T PF07701_consen 176 KLAKQLEQEKSAELE----ESMRELEEEKKKTDELLYSMLPPSVA 216 (219)
T ss_dssp HHHHHHH-HHHHHHH----HHHHHHHHHHHHHHHHHHHTS-HHHH
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 3445555 5555554 55689999999999999999997554
No 21
>COG2429 Archaeal GTP cyclohydrolase III [Nucleotide transport and metabolism]
Probab=83.41 E-value=3.5 Score=36.81 Aligned_cols=60 Identities=12% Similarity=0.148 Sum_probs=53.5
Q ss_pred cCceEEEeeccCCch-hhccCCChHHHHHHHHHHHHHHhhhhhcccceeEEEEeecceEEEeec
Q psy7403 17 YDSVTIYFSDIVGFT-SLSAESTPLQVVELLNDLYTCFDSVIENFDVYKVIFVVLSEIYSISLA 79 (368)
Q Consensus 17 ~~~vtilf~di~gft-~ls~~~~~~~~~~~Ln~~f~~~~~~i~~~~~~~~~~~~~Gd~~~~~~~ 79 (368)
-.-|+|...||.+-| ++....+|-.....++..+..+.+-+.++|+-..-.- ||-+|+ ++
T Consensus 129 dg~v~IAH~Dvn~~Tgt~Td~~~~~~t~~~I~~~~~~L~~~l~k~gal~fflG--GDN~ma-~~ 189 (250)
T COG2429 129 DGYVQIAHFDVNDATGTYTDIVSPYDTYTEIQRVYATLMRFLEKIGALLFFLG--GDNIMA-VC 189 (250)
T ss_pred CCceEEEEEeeecchhhhhcccchhHHHHHHHHHHHHHHHHHHhcCcEEEEec--CcceEE-EC
Confidence 357899999999999 9999999999999999999999999999997766666 999999 44
No 22
>PRK02240 GTP cyclohydrolase III; Provisional
Probab=69.93 E-value=19 Score=32.90 Aligned_cols=60 Identities=12% Similarity=0.095 Sum_probs=48.4
Q ss_pred cCceEEEeeccCCchhhcc-CCChHHHHHHHHHHHHHHhhhhhc-ccceeEEEEeecceEEEeec
Q psy7403 17 YDSVTIYFSDIVGFTSLSA-ESTPLQVVELLNDLYTCFDSVIEN-FDVYKVIFVVLSEIYSISLA 79 (368)
Q Consensus 17 ~~~vtilf~di~gft~ls~-~~~~~~~~~~Ln~~f~~~~~~i~~-~~~~~~~~~~~Gd~~~~~~~ 79 (368)
-..|+|...||.++|.... ..+|-+....+++++..+-+...+ ||+--+=.- ||-+|+ +|
T Consensus 132 ~~~v~iaH~Di~~~T~~~td~~~~~dt~~~i~~~~~~l~~~~~~~~g~l~ff~G--GDN~~~-~~ 193 (254)
T PRK02240 132 DGYVQIAHFDINDITGTYTDIENAFDTFLEIEQAYLALMRELRKAHDALSFFVG--GDNFMA-PC 193 (254)
T ss_pred CCceEEEEEeeecccceeeccCchhHHHHHHHHHHHHHHHHHHHhcCcEEEEec--CceEEE-EC
Confidence 5789999999999998755 558888888888888877787777 887665555 999999 54
No 23
>smart00267 GGDEF diguanylate cyclase. Diguanylate cyclase, present in a variety of bacteria
Probab=56.12 E-value=40 Score=27.02 Aligned_cols=56 Identities=13% Similarity=0.181 Sum_probs=44.7
Q ss_pred CceEEEeeccCCchhhccCCChHHHHHHHHHHHHHHhhhhhcccceeEEEEeecceEEE
Q psy7403 18 DSVTIYFSDIVGFTSLSAESTPLQVVELLNDLYTCFDSVIENFDVYKVIFVVLSEIYSI 76 (368)
Q Consensus 18 ~~vtilf~di~gft~ls~~~~~~~~~~~Ln~~f~~~~~~i~~~~~~~~~~~~~Gd~~~~ 76 (368)
...+++.++|.+|..+.+..+.+..-.+|..+...+.+.+...+ .....- +|.+.+
T Consensus 33 ~~~~l~~i~i~~~~~~~~~~g~~~~~~~l~~i~~~l~~~~~~~~-~~~r~~--~~~f~i 88 (163)
T smart00267 33 SPFALLLIDLDNFKDINDTYGHAVGDELLQEVAQRLSSCLRPGD-LLARLG--GDEFAL 88 (163)
T ss_pred CeEEEEEEEccccchhhhccCchhHHHHHHHHHHHHHHhcCCCC-EEEEec--CceEEE
Confidence 34899999999999999999999999999998888888877644 333333 677666
No 24
>cd01949 GGDEF Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.
Probab=42.43 E-value=72 Score=25.27 Aligned_cols=56 Identities=14% Similarity=0.199 Sum_probs=43.6
Q ss_pred CceEEEeeccCCchhhccCCChHHHHHHHHHHHHHHhhhhhcccceeEEEEeecceEEE
Q psy7403 18 DSVTIYFSDIVGFTSLSAESTPLQVVELLNDLYTCFDSVIENFDVYKVIFVVLSEIYSI 76 (368)
Q Consensus 18 ~~vtilf~di~gft~ls~~~~~~~~~~~Ln~~f~~~~~~i~~~~~~~~~~~~~Gd~~~~ 76 (368)
...+++..+|.+|..+....+.+..-.+|..+-..+.+.+...+ .....- ++.+++
T Consensus 30 ~~~~l~~i~i~~~~~i~~~~g~~~~~~~l~~~~~~l~~~~~~~~-~~~~~~--~~~f~~ 85 (158)
T cd01949 30 RPLALLLIDIDHFKQINDTYGHAAGDEVLKEVAERLRSSLRESD-LVARLG--GDEFAI 85 (158)
T ss_pred CeEEEEEEEchhhhHHHHhhChHhHHHHHHHHHHHHHHhCCCCC-EEEEec--CCeEEE
Confidence 56889999999999999999999999999998888888776533 333333 566665
No 25
>PF00990 GGDEF: GGDEF domain; InterPro: IPR000160 This domain appears to be ubiquitous in bacteria and is often linked to a regulatory domain, such as a phosphorylation receiver or oxygen sensing domain. Its function is to synthesize cyclic di-GMP, which is used as an intracellular signalling molecule in a wide variety of bacteria [,]. Enzymatic activity can be strongly influenced by the adjacent domains. Processes regulated by this domain include exopolysaccharide synthesis, biofilm formation, motility and cell differentiation. Structural studies of PleD from Caulobacter crescentus show that this domain forms a five-stranded beta sheet surrounded by helices, similar to the catalytic core of adenylate cyclase [].; PDB: 3IGN_A 3BRE_B 3EZU_A 3ICL_B 3PJX_A 3PJW_A 3HVW_A 3HVA_B 3I5C_B 3I5B_B ....
Probab=38.70 E-value=55 Score=26.32 Aligned_cols=57 Identities=11% Similarity=0.100 Sum_probs=46.5
Q ss_pred cCceEEEeeccCCchhhccCCChHHHHHHHHHHHHHHhhhhhcccceeEEEEeecceEEE
Q psy7403 17 YDSVTIYFSDIVGFTSLSAESTPLQVVELLNDLYTCFDSVIENFDVYKVIFVVLSEIYSI 76 (368)
Q Consensus 17 ~~~vtilf~di~gft~ls~~~~~~~~~~~Ln~~f~~~~~~i~~~~~~~~~~~~~Gd~~~~ 76 (368)
....+++..+|.+|..+....+.+..-.+|..+-..+...+.. +....+.- +|.+++
T Consensus 30 ~~~~~l~~i~i~~~~~l~~~~G~~~~~~~l~~i~~~L~~~~~~-~~~~~r~~--~~~f~i 86 (161)
T PF00990_consen 30 GEPFALVLIDIDNLDELNEKYGYEVGDEILRQIAKRLKKQLRE-SDILARLG--DDEFAI 86 (161)
T ss_dssp TSEEEEEEEEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCT-TSEEEEEE--TTEEEE
T ss_pred CCCceEEEEeccccccccccccccccccccccccccccccccc-cccccccc--chheee
Confidence 4789999999999999999988888888888888888877777 34445555 888776
No 26
>PRK10245 adrA diguanylate cyclase AdrA; Provisional
Probab=38.65 E-value=91 Score=30.17 Aligned_cols=57 Identities=16% Similarity=0.094 Sum_probs=44.9
Q ss_pred cCceEEEeeccCCchhhccCCChHHHHHHHHHHHHHHhhhhhcccceeEEEEeecceEEE
Q psy7403 17 YDSVTIYFSDIVGFTSLSAESTPLQVVELLNDLYTCFDSVIENFDVYKVIFVVLSEIYSI 76 (368)
Q Consensus 17 ~~~vtilf~di~gft~ls~~~~~~~~~~~Ln~~f~~~~~~i~~~~~~~~~~~~~Gd~~~~ 76 (368)
.+..++++.||.+|..+.+..+.+.--++|..+-..+...+...+ ...+.- ||.+.+
T Consensus 234 ~~~~~ll~idId~Fk~INd~~Gh~~GD~lL~~vA~~L~~~l~~~d-~laRlg--gdeFav 290 (366)
T PRK10245 234 HRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSD-VIGRFG--GDEFAV 290 (366)
T ss_pred CCCEEEEEEECCcchHHHHhhCchHHHHHHHHHHHHHHHhCCCCC-EEEEEc--CcEEEE
Confidence 456899999999999999999888888888887777777776544 344555 898887
No 27
>COG2199 c-di-GMP synthetase (diguanylate cyclase, GGDEF domain) [Signal transduction mechanisms]
Probab=38.40 E-value=1.1e+02 Score=25.73 Aligned_cols=57 Identities=11% Similarity=0.152 Sum_probs=46.0
Q ss_pred cCceEEEeeccCCchhhccCCChHHHHHHHHHHHHHHhhhhhcccceeEEEEeecceEEE
Q psy7403 17 YDSVTIYFSDIVGFTSLSAESTPLQVVELLNDLYTCFDSVIENFDVYKVIFVVLSEIYSI 76 (368)
Q Consensus 17 ~~~vtilf~di~gft~ls~~~~~~~~~~~Ln~~f~~~~~~i~~~~~~~~~~~~~Gd~~~~ 76 (368)
....++++.||-+|-.+....+-..=-.+|..+-..+...+...+ ...+.- ||-+.+
T Consensus 49 ~~~~~l~~iDiD~Fk~iND~~Gh~~GD~vL~~va~~L~~~~~~~~-~~~R~g--GdEF~i 105 (181)
T COG2199 49 GEPLALLLLDLDHFKQINDTYGHAAGDEVLREVARRLRSNLREGD-LVARLG--GDEFAV 105 (181)
T ss_pred CCCeEEEEEeCcCCccccccccchHHHHHHHHHHHHHHHhcCCCC-EEEEec--cceeEE
Confidence 457999999999999999888877777788888777887777766 455555 888877
No 28
>PRK09894 diguanylate cyclase; Provisional
Probab=33.55 E-value=1.1e+02 Score=28.14 Aligned_cols=56 Identities=18% Similarity=0.172 Sum_probs=44.7
Q ss_pred CceEEEeeccCCchhhccCCChHHHHHHHHHHHHHHhhhhhcccceeEEEEeecceEEE
Q psy7403 18 DSVTIYFSDIVGFTSLSAESTPLQVVELLNDLYTCFDSVIENFDVYKVIFVVLSEIYSI 76 (368)
Q Consensus 18 ~~vtilf~di~gft~ls~~~~~~~~~~~Ln~~f~~~~~~i~~~~~~~~~~~~~Gd~~~~ 76 (368)
...++++.||-+|..+....+.+.--.+|..+-..+...+...+ ...+.- ||.+++
T Consensus 157 ~~~~l~~i~id~f~~in~~~G~~~gd~~L~~ia~~l~~~~~~~~-~~~R~~--g~~F~i 212 (296)
T PRK09894 157 QNLYLALLDIDRFKLVNDTYGHLIGDVVLRTLATYLASWTRDYE-TVYRYG--GEEFII 212 (296)
T ss_pred CcEEEEEEECccccHHHHccCcHHHHHHHHHHHHHHHHhCCCCC-EEEEEc--CCeEEE
Confidence 46899999999999999999988888888888777777776654 344455 888877
No 29
>PRK02240 GTP cyclohydrolase III; Provisional
Probab=33.29 E-value=1.3e+02 Score=27.62 Aligned_cols=61 Identities=16% Similarity=0.190 Sum_probs=48.5
Q ss_pred EEeeccCCchhhccCCChH---HHHHHHHHHHHHHhhhhhcccceeEEEEeecceEEEeecccccc
Q psy7403 22 IYFSDIVGFTSLSAESTPL---QVVELLNDLYTCFDSVIENFDVYKVIFVVLSEIYSISLAALDYE 84 (368)
Q Consensus 22 ilf~di~gft~ls~~~~~~---~~~~~Ln~~f~~~~~~i~~~~~~~~~~~~~Gd~~~~~~~g~~~~ 84 (368)
|.-..|.||-.+++.+.|. ++-.+-.++|..+.+.+.++|++.+-+= ||-+++..-|++..
T Consensus 4 it~iqid~YgpWT~t~~prRE~dlQ~lQsrLya~L~~~~~~~ggl~Ff~R--gDN~iavtNGI~~~ 67 (254)
T PRK02240 4 ITLIQIDNYGPWTVTPNPRRESDLQALQSRLYADLAQQFGARDGYVFFTR--FDNMIAVTNGIDLE 67 (254)
T ss_pred EEEEEecCCCcCcCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCEEEecc--CceEEEEcCCCCHH
Confidence 4556788999999998874 3445567999999999999999999888 99999955566443
No 30
>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1. Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron
Probab=30.69 E-value=91 Score=28.93 Aligned_cols=64 Identities=16% Similarity=0.275 Sum_probs=47.5
Q ss_pred hhHHHHHHHhhhhhHHHHHhHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy7403 101 NNLEALVEERTADYLEEKRKCEELLYQLLPKDYESNNILDNLLSRMEQYANNLEALVEERTADY 164 (368)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d~~~~~~e~~~~~L~~~~~~~t~~l 164 (368)
..+..++.+++...++.|+.+.+++....-..........+.+..++++.++|+....+++.++
T Consensus 251 ~~l~~li~~~l~~~p~~Rpt~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (317)
T cd06635 251 DYFRNFVDSCLQKIPQDRPTSEELLKHMFVLRERPETVLIDLIQRTKDAVRELDNLQYRKMKKL 314 (317)
T ss_pred HHHHHHHHHHccCCcccCcCHHHHHhChhhhccCcccchhhHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3456777788888888888888888766554444555667888888899999888877766654
No 31
>TIGR00254 GGDEF diguanylate cyclase (GGDEF) domain. The GGDEF domain is named for the motif GG[DE]EF shared by many proteins carrying the domain. There is evidence that the domain has diguanylate cyclase activity. Several proteins carrying this domain also carry domains with functions relating to environmental sensing. These include PleD, a response regulator protein involved in the swarmer-to-stalked cell transition in Caulobacter crescentus, and FixL, a heme-containing oxygen sensor protein.
Probab=29.82 E-value=1.6e+02 Score=23.63 Aligned_cols=56 Identities=16% Similarity=0.178 Sum_probs=42.8
Q ss_pred CceEEEeeccCCchhhccCCChHHHHHHHHHHHHHHhhhhhcccceeEEEEeecceEEE
Q psy7403 18 DSVTIYFSDIVGFTSLSAESTPLQVVELLNDLYTCFDSVIENFDVYKVIFVVLSEIYSI 76 (368)
Q Consensus 18 ~~vtilf~di~gft~ls~~~~~~~~~~~Ln~~f~~~~~~i~~~~~~~~~~~~~Gd~~~~ 76 (368)
...+++..+|.+|..+...++.+..-.+|..+...+.+.+.... ...+.- ++.+++
T Consensus 32 ~~~~l~~i~i~~~~~i~~~~G~~~~~~ll~~~a~~l~~~~~~~~-~i~r~~--~~~f~i 87 (165)
T TIGR00254 32 RSFSVLMIDIDNFKKINDTLGHDVGDEVLREVARILQSSVRGSD-VVGRYG--GEEFVV 87 (165)
T ss_pred CceEEEEEeccchhHHHHhhChhhHHHHHHHHHHHHHHhcCcCC-EEEEec--CCeEEE
Confidence 45789999999999999999888888888888878877775443 334444 676666
No 32
>smart00759 Flu_M1_C Influenza Matrix protein (M1) C-terminal domain. This region is thought to be a second domain of the M1 matrix protein.
Probab=29.00 E-value=2.5e+02 Score=21.04 Aligned_cols=44 Identities=20% Similarity=0.266 Sum_probs=32.3
Q ss_pred HHHHHhHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHH
Q psy7403 115 LEEKRKCEELLYQLLPKDYESNNILDNLLSRMEQYANNLEALVE 158 (368)
Q Consensus 115 ~~~~~~~~~~~~~l~~~~~~~~~~~d~~~~~~e~~~~~L~~~~~ 158 (368)
.++.+..-..++.++...-++..+.|++++.|.+|...+..++.
T Consensus 49 A~qa~~mi~alRsiGahp~s~~Gi~dDllEnLq~~q~~mg~~mq 92 (95)
T smart00759 49 AEEAQQMIGALRSIGAHPKSGAGIADDLLENLKASQKGMGALMK 92 (95)
T ss_pred HHHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHHhhhhhHHHH
Confidence 34444445556666667778889999999999999988876653
No 33
>PRK15426 putative diguanylate cyclase YedQ; Provisional
Probab=23.39 E-value=1.6e+02 Score=29.96 Aligned_cols=56 Identities=13% Similarity=0.076 Sum_probs=45.3
Q ss_pred CceEEEeeccCCchhhccCCChHHHHHHHHHHHHHHhhhhhcccceeEEEEeecceEEE
Q psy7403 18 DSVTIYFSDIVGFTSLSAESTPLQVVELLNDLYTCFDSVIENFDVYKVIFVVLSEIYSI 76 (368)
Q Consensus 18 ~~vtilf~di~gft~ls~~~~~~~~~~~Ln~~f~~~~~~i~~~~~~~~~~~~~Gd~~~~ 76 (368)
...++++.||.+|..+.+..+.+.--.+|..+-..+...+..++ ...+.- ||.+.+
T Consensus 428 ~~~~l~~idid~fk~iNd~~G~~~GD~~L~~~a~~l~~~~~~~~-~~~R~g--gdeF~i 483 (570)
T PRK15426 428 QPFSVIQLDLDHFKSINDRFGHQAGDRVLSHAAGLISSSLRAQD-VAGRVG--GEEFCV 483 (570)
T ss_pred CcEEEEEEECcccCHhhHhhChHHHHHHHHHHHHHHHHhCCCCC-EEEeec--CcEEEE
Confidence 45899999999999999999988888888888777777776554 344555 899877
No 34
>PF11888 DUF3408: Protein of unknown function (DUF3408); InterPro: IPR021823 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 128 to 160 amino acids in length.
Probab=22.90 E-value=2.4e+02 Score=23.07 Aligned_cols=41 Identities=17% Similarity=0.411 Sum_probs=31.4
Q ss_pred HhHHHHHHhhcCCCCCCcchHHHHHHH-HHHHHHHHHHHHHH
Q psy7403 119 RKCEELLYQLLPKDYESNNILDNLLSR-MEQYANNLEALVEE 159 (368)
Q Consensus 119 ~~~~~~~~~l~~~~~~~~~~~d~~~~~-~e~~~~~L~~~~~~ 159 (368)
.+...++..++....+-..++|+++.. |++|...+.++.++
T Consensus 91 ~~l~~Iv~~ig~~~~si~~yidNIL~~Hle~~~eeI~~l~~~ 132 (136)
T PF11888_consen 91 ERLSRIVRVIGERKMSISGYIDNILRHHLEEYREEINELYEK 132 (136)
T ss_pred HHHHHHHHHHCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445578888877778888999998875 88888888766544
No 35
>PRK09966 putative inner membrane diguanylate cyclase; Provisional
Probab=22.12 E-value=2e+02 Score=27.87 Aligned_cols=57 Identities=7% Similarity=-0.009 Sum_probs=43.7
Q ss_pred cCceEEEeeccCCchhhccCCChHHHHHHHHHHHHHHhhhhhcccceeEEEEeecceEEE
Q psy7403 17 YDSVTIYFSDIVGFTSLSAESTPLQVVELLNDLYTCFDSVIENFDVYKVIFVVLSEIYSI 76 (368)
Q Consensus 17 ~~~vtilf~di~gft~ls~~~~~~~~~~~Ln~~f~~~~~~i~~~~~~~~~~~~~Gd~~~~ 76 (368)
....++++.|+-+|..+.+.++.+.--++|..+-..+.+.+.+++ ...+.- ||.+.+
T Consensus 276 ~~~~~l~~i~id~f~~in~~~G~~~gd~~l~~~a~~L~~~~~~~~-~~~R~~--~deF~i 332 (407)
T PRK09966 276 RKTSALLFLDGDNFKYINDTWGHATGDRVLIEIAKRLAEFGGLRH-KAYRLG--GDEFAM 332 (407)
T ss_pred CCceEEEEEECccchHHHhhhchHHHHHHHHHHHHHHHHhCCCCC-EEEEEc--cceEEE
Confidence 345789999999999999999888888888887777776666543 233444 888876
Done!