RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7403
(368 letters)
>gnl|CDD|201086 pfam00211, Guanylate_cyc, Adenylate and Guanylate cyclase catalytic
domain.
Length = 184
Score = 109 bits (274), Expect = 2e-28
Identities = 37/64 (57%), Positives = 44/64 (68%)
Query: 185 GPCVAGVVGLKMPRYCLFGDTVNTASRMESNGQALKIHVSPFTKEVLDTFGTFDLELRGE 244
GP VAGV+G + PRY ++GDTVN ASRMES G KIHVS T +L T F+ RGE
Sbjct: 109 GPVVAGVIGARRPRYDVWGDTVNLASRMESTGVPGKIHVSEETYRLLKTREQFEFTERGE 168
Query: 245 VEMK 248
VE+K
Sbjct: 169 VEVK 172
Score = 87.3 bits (217), Expect = 2e-20
Identities = 31/54 (57%), Positives = 43/54 (79%)
Query: 12 VVAETYDSVTIYFSDIVGFTSLSAESTPLQVVELLNDLYTCFDSVIENFDVYKV 65
V A++YD+VTI F+DIVGFT+LS+ +P ++V LLNDLYT FD +++ VYKV
Sbjct: 1 VYAQSYDNVTILFADIVGFTALSSRHSPEELVRLLNDLYTRFDELLDKHGVYKV 54
Score = 74.2 bits (183), Expect = 1e-15
Identities = 32/78 (41%), Positives = 46/78 (58%), Gaps = 7/78 (8%)
Query: 232 DTFGTFDLELRGE--VEMKVETIGDAYMVVSGLPMRNGNLHAREIARMSLALLDTVVTFT 289
D + FD EL + V KV+TIGDAYM SGLP HA+ +A M+L +L+ + +
Sbjct: 37 DLYTRFD-ELLDKHGVY-KVKTIGDAYMAASGLP-EPSPAHAQTLAEMALDMLEAIKSVN 93
Query: 290 IRHRPTDQLKLRIGMHTG 307
I L++R+G+HTG
Sbjct: 94 IHSFE--GLRVRVGIHTG 109
Score = 49.9 bits (120), Expect = 3e-07
Identities = 18/29 (62%), Positives = 25/29 (86%)
Query: 331 VVAETYDSVTIYFSDIVGFTSLSAESTPE 359
V A++YD+VTI F+DIVGFT+LS+ +PE
Sbjct: 1 VYAQSYDNVTILFADIVGFTALSSRHSPE 29
>gnl|CDD|214485 smart00044, CYCc, Adenylyl- / guanylyl cyclase, catalytic domain.
Present in two copies in mammalian adenylyl cyclases.
Eubacterial homologues are known. Two residues (Asn,
Arg) are thought to be involved in catalysis. These
cyclases have important roles in a diverse range of
cellular processes.
Length = 194
Score = 95.4 bits (238), Expect = 3e-23
Identities = 42/66 (63%), Positives = 48/66 (72%), Gaps = 1/66 (1%)
Query: 1 SVASQLILG-QSVVAETYDSVTIYFSDIVGFTSLSAESTPLQVVELLNDLYTCFDSVIEN 59
SVA QL G V AE+YD+VTI FSDIVGFTSL + STP QVV LLNDLY+ FD +I+
Sbjct: 17 SVAEQLKRGGSPVPAESYDNVTILFSDIVGFTSLCSTSTPEQVVNLLNDLYSRFDQIIDR 76
Query: 60 FDVYKV 65
YKV
Sbjct: 77 HGGYKV 82
Score = 88.9 bits (221), Expect = 8e-21
Identities = 34/56 (60%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Query: 185 GPCVAGVVGLKMPRYCLFGDTVNTASRMESNGQALKIHVSPFTKEVL-DTFGTFDL 239
GP VAGVVG++MPRYCLFGDTVN ASRMES G +I VS T +L G F
Sbjct: 139 GPVVAGVVGIRMPRYCLFGDTVNLASRMESAGDPGQIQVSEETYSLLARRGGQFVF 194
Score = 85.4 bits (212), Expect = 1e-19
Identities = 50/155 (32%), Positives = 71/155 (45%), Gaps = 27/155 (17%)
Query: 166 EEKRKCEELLYQLLPN-------CYQGPCVAGVVGLKMPRYC---LFGDTVNTASRMESN 215
EEK+K + LL QLLP P A LF D V S ++
Sbjct: 1 EEKKKTDRLLDQLLPASVAEQLKRGGSPVPAE------SYDNVTILFSDIVGFTSLCSTS 54
Query: 216 GQALKIHVSPF-TKEVLDT-FGTFDLELRGEVEMKVETIGDAYMVVSGLPMRNGNLHARE 273
+P +L+ + FD + KV+TIGDAYMV SGLP HA
Sbjct: 55 --------TPEQVVNLLNDLYSRFDQIIDRHGGYKVKTIGDAYMVASGLPEEALVDHAEL 106
Query: 274 IARMSLALLDTVVTFTIRHRPTDQLKLRIGMHTGC 308
IA +L +++ + T ++HR + L++RIG+HTG
Sbjct: 107 IADEALDMVEELKTVLVQHR-EEGLRVRIGIHTGP 140
Score = 56.1 bits (136), Expect = 2e-09
Identities = 28/41 (68%), Positives = 31/41 (75%), Gaps = 1/41 (2%)
Query: 320 SVASQLILG-QSVVAETYDSVTIYFSDIVGFTSLSAESTPE 359
SVA QL G V AE+YD+VTI FSDIVGFTSL + STPE
Sbjct: 17 SVAEQLKRGGSPVPAESYDNVTILFSDIVGFTSLCSTSTPE 57
>gnl|CDD|143636 cd07302, CHD, cyclase homology domain. Catalytic domains of the
mononucleotidyl cyclases (MNC's), also called cyclase
homology domains (CHDs), are part of the class III
nucleotidyl cyclases. This class includes eukaryotic and
prokaryotic adenylate cyclases (AC's) and guanylate
cyclases (GC's). They seem to share a common catalytic
mechanism in their requirement for two magnesium ions to
bind the polyphosphate moiety of the nucleotide.
Length = 177
Score = 83.4 bits (207), Expect = 5e-19
Identities = 33/64 (51%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Query: 185 GPCVAGVVGLKMPRYCLFGDTVNTASRMESNGQALKIHVSPFTKEVLDTFGTFDLELRGE 244
GP VAGVVG + P Y + GDTVN A+R+ES + +I VS T E+L G F+ E GE
Sbjct: 104 GPVVAGVVGSERPEYTVIGDTVNLAARLESLAKPGQILVSEATYELLGDAG-FEFEELGE 162
Query: 245 VEMK 248
VE+K
Sbjct: 163 VELK 166
Score = 68.0 bits (167), Expect = 1e-13
Identities = 21/49 (42%), Positives = 31/49 (63%)
Query: 20 VTIYFSDIVGFTSLSAESTPLQVVELLNDLYTCFDSVIENFDVYKVIFV 68
VT+ F+DIVGFT+LS P ++VELLN+ ++ FD +IE +
Sbjct: 2 VTVLFADIVGFTALSERLGPEELVELLNEYFSAFDEIIERHGGTVDKTI 50
Score = 67.6 bits (166), Expect = 2e-13
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 247 MKVETIGDAYMVVSGLPMRNGNLHAREIARMSLALLDTVVTFTIRHRPTDQLKLRIGMHT 306
+TIGDA M V GLP + + HA R +L + + + L+LRIG+HT
Sbjct: 45 TVDKTIGDAVMAVFGLPGAHED-HAERAVRAALEMQEALAELNAEREGGPPLRLRIGIHT 103
Query: 307 G 307
G
Sbjct: 104 G 104
Score = 38.7 bits (91), Expect = 0.001
Identities = 13/21 (61%), Positives = 16/21 (76%)
Query: 339 VTIYFSDIVGFTSLSAESTPE 359
VT+ F+DIVGFT+LS PE
Sbjct: 2 VTVLFADIVGFTALSERLGPE 22
>gnl|CDD|143637 cd07556, Nucleotidyl_cyc_III, Class III nucleotidyl cyclases.
Class III nucleotidyl cyclases are the largest, most
diverse group of nucleotidyl cyclases (NC's) containing
prokaryotic and eukaryotic proteins. They can be
divided into two major groups; the mononucleotidyl
cyclases (MNC's) and the diguanylate cyclases (DGC's).
The MNC's, which include the adenylate cyclases (AC's)
and the guanylate cyclases (GC's), have a conserved
cyclase homology domain (CHD), while the DGC's have a
conserved GGDEF domain, named after a conserved motif
within this subgroup. Their products, cyclic guanylyl
and adenylyl nucleotides, are second messengers that
play important roles in eukaryotic signal transduction
and prokaryotic sensory pathways.
Length = 133
Score = 53.1 bits (128), Expect = 9e-09
Identities = 23/49 (46%), Positives = 30/49 (61%)
Query: 20 VTIYFSDIVGFTSLSAESTPLQVVELLNDLYTCFDSVIENFDVYKVIFV 68
VTI F+DIVGFTSL+ P + ELLN+L FDS+I K+ +
Sbjct: 2 VTILFADIVGFTSLADALGPDEGDELLNELAGRFDSLIRRSGDLKIKTI 50
Score = 47.7 bits (114), Expect = 7e-07
Identities = 18/39 (46%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 184 QGPCVAGVVGLKMPRYCLFGDTVNTASRMESNGQALKIH 222
GP V GV+G + P+Y ++G VN ASRMES +A ++
Sbjct: 96 TGPVVVGVIGSR-PQYDVWGALVNLASRMESQAKAGQVL 133
Score = 42.0 bits (99), Expect = 7e-05
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 9/80 (11%)
Query: 229 EVLDT-FGTFDLELRGEVEMKVETIGDAYMVVSGLPMRNGNLHAREIARMSLALLDTVVT 287
E+L+ G FD +R ++K++TIGD +MVVSGL H + + + V
Sbjct: 26 ELLNELAGRFDSLIRRSGDLKIKTIGDEFMVVSGL------DHPAAAVAFAEDMREAVS- 78
Query: 288 FTIRHRPTDQLKLRIGMHTG 307
+ + +++RIG+HTG
Sbjct: 79 -ALNQSEGNPVRVRIGIHTG 97
Score = 34.6 bits (80), Expect = 0.024
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 339 VTIYFSDIVGFTSLSAESTPELRGEV 364
VTI F+DIVGFTSL+ P+ E+
Sbjct: 2 VTILFADIVGFTSLADALGPDEGDEL 27
>gnl|CDD|225025 COG2114, CyaA, Adenylate cyclase, family 3 (some proteins contain
HAMP domain) [Signal transduction mechanisms].
Length = 227
Score = 41.0 bits (96), Expect = 4e-04
Identities = 18/51 (35%), Positives = 24/51 (47%)
Query: 18 DSVTIYFSDIVGFTSLSAESTPLQVVELLNDLYTCFDSVIENFDVYKVIFV 68
VT+ F+DIVG T LS +VELLN + V+ V F+
Sbjct: 45 RRVTLLFADIVGSTELSESLGDEALVELLNLYFDAVAEVVARHGGRVVKFI 95
Score = 37.9 bits (88), Expect = 0.004
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 249 VETIGDAYMVVSGLPMRNGNLHAREIARMSLALLDTVVTFTIRHRPTDQLKLRIGMHTG 307
V+ IGD ++ V G P + + LAL + + + L++RIG+HTG
Sbjct: 92 VKFIGDGFLAVFGRPSPLEDA-VACALDLQLALRNPL-----ARLRRESLRVRIGIHTG 144
Score = 36.4 bits (84), Expect = 0.013
Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
Query: 185 GPCVAGVVGLKMPRYCLFGDTVNTASRMESNGQALKIHVSPFTKEVLDTFGTFDLELRGE 244
G V G G Y + G VN A+R+ES + ++ +S T +++ G
Sbjct: 144 GEVVVGNTG----GYTVVGSAVNQAARLESLAKPGQVLLSEATYDLVRDL-VDLFSGLGS 198
Query: 245 VEMK 248
+K
Sbjct: 199 HRLK 202
Score = 28.3 bits (63), Expect = 5.1
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 337 DSVTIYFSDIVGFTSLSAESTPE 359
VT+ F+DIVG T LS E
Sbjct: 45 RRVTLLFADIVGSTELSESLGDE 67
>gnl|CDD|219526 pfam07701, HNOBA, Heme NO binding associated. The HNOBA domain is
found associated with the HNOB domain and pfam00211 in
soluble cyclases and signalling proteins. The HNOB
domain is predicted to function as a heme-dependent
sensor for gaseous ligands, and transduce diverse
downstream signals, in both bacteria and animals.
Length = 209
Score = 34.1 bits (79), Expect = 0.072
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 90 DNLLSRMEQYANNLEALVEERTADYLEEKRKCEELLYQLLPKD 132
L R+E+ + LE E + EEK+K ++LLY +LPK
Sbjct: 166 LKLKKRLEKLKDKLE----EAHRELEEEKKKTDDLLYSMLPKS 204
Score = 31.8 bits (73), Expect = 0.34
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 140 DNLLSRMEQYANNLEALVEERTADYLEEKRKCEELLYQLLP 180
L R+E+ + LE E + EEK+K ++LLY +LP
Sbjct: 166 LKLKKRLEKLKDKLE----EAHRELEEEKKKTDDLLYSMLP 202
>gnl|CDD|216108 pfam00769, ERM, Ezrin/radixin/moesin family. This family of
proteins contain a band 4.1 domain (pfam00373), at their
amino terminus. This family represents the rest of these
proteins.
Length = 244
Score = 31.3 bits (71), Expect = 0.58
Identities = 29/93 (31%), Positives = 30/93 (32%), Gaps = 7/93 (7%)
Query: 89 LDNLLSRMEQYAN-----NLEALVEERTADYLEEKRKCEELLYQLLPKD-YESNNILDNL 142
L RMEQ E E TA LEEK K EE QLL K E L
Sbjct: 7 QQELEERMEQMEEDMRRAQKELEEYEETALELEEKLKQEEEEAQLLEKKADELEEENRRL 66
Query: 143 LSRMEQYANNLEALVEERTADYLEEKRKCEELL 175
E L E + E K EE
Sbjct: 67 EEEAAASEEERERLEAEV-DEATAEVAKLEEER 98
>gnl|CDD|173630 cd05044, PTKc_c-ros, Catalytic domain of the Protein Tyrosine
Kinase, C-ros. Protein Tyrosine Kinases (PTK) family;
C-ros and Drosophila Sevenless proteins; catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. The
proto-oncogene c-ros encodes an orphan receptor tyr
kinase (RTK) with an unknown ligand. RTKs contain an
extracellular ligand-binding domain, a transmembrane
region, and an intracellular tyr kinase domain. RTKs are
usually activated through ligand binding, which causes
dimerization and autophosphorylation of the
intracellular tyr kinase catalytic domain. C-ros is
expressed in embryonic cells of the kidney, intestine
and lung, but disappears soon after birth. It persists
only in the adult epididymis. Male mice bearing inactive
mutations of c-ros lack the initial segment of the
epididymis and are infertile. The Drosophila protein,
Sevenless, is required for the specification of the R7
photoreceptor cell during eye development.
Length = 269
Score = 31.0 bits (70), Expect = 0.99
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 151 NNLEALVEERTADYLEEKRKCEELLYQLLPNCY 183
NN E L L++ C + +YQL+ NC+
Sbjct: 218 NNQEVLQHVTAGGRLQKPENCPDKIYQLMTNCW 250
>gnl|CDD|237869 PRK14962, PRK14962, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 472
Score = 30.5 bits (69), Expect = 1.5
Identities = 32/142 (22%), Positives = 56/142 (39%), Gaps = 29/142 (20%)
Query: 57 IENFDVYKVIFVVLSEIY------------SISLAALDYESNNILDNLLSRMEQYANNLE 104
I N DV K +F VL ++Y +I D E ++++ Q N L
Sbjct: 254 IFNGDV-KRVFTVLDDVYYSGKDYEVLIQQAIEDLVEDLERERA-NDIIQVSRQLLNIL- 310
Query: 105 ALVEERTADYLEEKRKCEELLYQLLPKDYESNNIL--------DNLLSRMEQYANNLEAL 156
R + EEKR +L + + S N+ DN + ++
Sbjct: 311 -----REIKFAEEKRLVCKLGSASIATRFSSPNVQENDVEEKNDNSNVQQKEKKKEESKA 365
Query: 157 VEERTADYLEEKRKCEELLYQL 178
EE+ D +E +++ +EL+ +L
Sbjct: 366 KEEKQED-IEFEKRFKELMEEL 386
>gnl|CDD|217902 pfam04111, APG6, Autophagy protein Apg6. In yeast, 15 Apg proteins
coordinate the formation of autophagosomes. Autophagy is
a bulk degradation process induced by starvation in
eukaryotic cells. Apg6/Vps30p has two distinct functions
in the autophagic process, either associated with the
membrane or in a retrieval step of the carboxypeptidase
Y sorting pathway.
Length = 356
Score = 30.2 bits (68), Expect = 1.5
Identities = 19/82 (23%), Positives = 31/82 (37%), Gaps = 7/82 (8%)
Query: 90 DNLLSRMEQYANNLEALVEERTADYLEEKRKCEELLYQLLPKDYESN-NILDNLLSRMEQ 148
+ L +N EAL E EE+R +EL ++ E + LD L +++
Sbjct: 52 LSKLESQNVEISNYEALDSELDELKKEEERLLDEL------EELEKEDDDLDGELVELQE 105
Query: 149 YANNLEALVEERTADYLEEKRK 170
LE + +Y R
Sbjct: 106 EKEQLENEELQYLREYNLFDRN 127
>gnl|CDD|147845 pfam05914, RIB43A, RIB43A. This family consists of several
RIB43A-like eukaryotic proteins. Ciliary and flagellar
microtubules contain a specialised set of
protofilaments, termed ribbons, that are composed of
tubulin and several associated proteins. RIB43A was
first characterized in the unicellular biflagellate,
Chlamydomonas reinhardtii although highly related
sequences are present in several higher eukaryotes
including humans. The function of this protein is
unknown although the structure of RIB43A and its
association with the specialised protofilament ribbons
and with basal bodies is relevant to the proposed role
of ribbons in forming and stabilising doublet and
triplet microtubules and in organising their
three-dimensional structure. Human RIB43A homologues
could represent a structural requirement in centriole
replication in dividing cells.
Length = 379
Score = 30.0 bits (68), Expect = 1.9
Identities = 19/91 (20%), Positives = 32/91 (35%), Gaps = 15/91 (16%)
Query: 90 DNLLSRMEQYANNLEALVEERTADYLEEKRKCEELLYQLLPKDYESNNILDNLLSRMEQY 149
D + EQ LE V+ER + K + L+ + LD+ +
Sbjct: 151 DRKKMQQEQQREWLEQQVQERQQA--KAAEKQADTLHD------QLRVELDHRAQELASL 202
Query: 150 ANNLEALVEERTADY-------LEEKRKCEE 173
VE+ TAD+ E+ + E+
Sbjct: 203 EEECRRAVEQATADFNKALAEEQRERERREK 233
>gnl|CDD|201077 pfam00201, UDPGT, UDP-glucoronosyl and UDP-glucosyl transferase.
Length = 500
Score = 28.9 bits (65), Expect = 4.4
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 183 YQGPCVAGVVGLKMPRYCLFGDTVNTASRMESNGQALKIHVSPFTKEVLDT 233
Y+ C GV + MP LFGD ++ A ME+ G A+ ++V T E L
Sbjct: 355 YEAIC-HGVPMVGMP---LFGDQMDNAKHMEAKGAAVTLNVLTMTSEDLLN 401
>gnl|CDD|193602 cd09827, PET_Prickle, The PET domain of Prickle. The PET domain of
Prickle: Prickle contains an N-terminal PET domain and
three C-terminal LIM domains. Prickle has been
implicated in regulation of cell movement in the planar
cell polarity (PCP) pathway which requires the
conserved Frizzled/Dishevelled (Dsh); Prickle interacts
with Dishevelled, thereby modulating the activity of
Frizzled/Dishevelled and the PCP signaling. Two forms of
Prickle have been identified, namely Prickle 1 and
Prickle 2. These are differentially expressed; Prickle 1
is found in fetal heart and hematological malignancies,
while Prickle 2 is expressed in fetal brain, adult
cartilage, pancreatic islet, and some types of timorous
cells. The PET domain is a protein-protein interaction
domain, usually found in conjunction with the LIM
domain, which is also involved in protein-protein
interactions. The PET containing proteins serve as
adaptors or scaffolds to support the assembly of
multimeric protein complexes.
Length = 97
Score = 27.3 bits (61), Expect = 4.9
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 13/58 (22%)
Query: 117 EKRKCEELLYQLLPKDYESNNILDNLLSRMEQYANNLEALVEERTADYLEEKRKCEEL 174
EK + ++LL+QL P D E +Y N+L E+R +RK E L
Sbjct: 44 EKYRIKQLLHQLPPHDNEV------------RYCNSLSE-EEKRELRLFSAQRKREAL 88
>gnl|CDD|218622 pfam05521, Phage_H_T_join, Phage head-tail joining protein.
Length = 96
Score = 27.3 bits (61), Expect = 4.9
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 269 LHAREIARMSLALLDTVVTFTIRHRP--TDQLKLRIG 303
L RE A + V TIR+RP T +++R G
Sbjct: 37 LSGREFIAAGAAQAEVTVRITIRYRPDITADMRIRFG 73
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 28.6 bits (63), Expect = 6.3
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 11/80 (13%)
Query: 95 RMEQYANNLEALVEERTADYLEEKRKCEELLYQLLPKDYESNNILDNLLSRMEQYANNLE 154
+ + N ++A E + A+ E+K+K EE K E L + + A E
Sbjct: 1653 KKAEEENKIKAAEEAKKAE--EDKKKAEEA-----KKAEEDEKKAAEALKKEAEEAKKAE 1705
Query: 155 ALVEERTADYLEEKRKCEEL 174
L ++ EEK+K EEL
Sbjct: 1706 ELKKKEA----EEKKKAEEL 1721
>gnl|CDD|202101 pfam02050, FliJ, Flagellar FliJ protein.
Length = 122
Score = 27.2 bits (61), Expect = 6.4
Identities = 16/89 (17%), Positives = 32/89 (35%), Gaps = 10/89 (11%)
Query: 95 RMEQYANNLEALVEERTADYLEEKRKCEELLYQLLPKDYESN-NILDNLLSRMEQYANNL 153
+EQ LE L + R +Y ++ + + + + L + Q L
Sbjct: 13 ELEQAEEKLEELQQYR-LEYRQQLS---GSGQGISAAELRNYQAFISALDEAIAQQQQEL 68
Query: 154 EAL---VEERTADYLEEKRKCE--ELLYQ 177
E VE+ + E ++ + E L +
Sbjct: 69 EQAEKQVEQAREQWQEANQERKKLEKLLE 97
>gnl|CDD|112770 pfam03971, IDH, Monomeric isocitrate dehydrogenase.
NADP(+)-dependent isocitrate dehydrogenase (ICD) is an
important enzyme of the intermediary metabolism, as it
controls the carbon flux within the citric acid cycle
and supplies the cell with 2-oxoglutarate EC:1.1.1.42
and NADPH for biosynthetic purposes.
Length = 735
Score = 28.7 bits (64), Expect = 6.5
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 10/80 (12%)
Query: 223 VSPFTKEVLDTFGTFDLELRGEVEMKVET-IGDAYMVVSGLP--MRN---GNLHAREIAR 276
VS F K+V D G +L ++ + V IGD Y + LP R ++HA R
Sbjct: 267 VSVFYKDVFDKHG----DLFDQLGVNVNNGIGDLYAKIVSLPASQRAEIEADIHAVYAHR 322
Query: 277 MSLALLDTVVTFTIRHRPTD 296
LA++D+ T H P+D
Sbjct: 323 PELAMVDSDKGITNLHVPSD 342
>gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional.
Length = 1486
Score = 28.8 bits (65), Expect = 6.7
Identities = 14/63 (22%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 115 LEEKRKCEELLYQL---LPKDYESNNILDNLLSRMEQYANNLEALVEERTADYLEEKRKC 171
L ++++ E LL + L K+ + + L+ L +E +L V E + +++
Sbjct: 529 LRQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQL 588
Query: 172 EEL 174
E+L
Sbjct: 589 EQL 591
>gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein. Function of MutS2 is
unknown. It should not be considered a DNA mismatch
repair protein. It is likely a DNA mismatch binding
protein of unknown cellular function [DNA metabolism,
Other].
Length = 771
Score = 28.6 bits (64), Expect = 6.7
Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 7/78 (8%)
Query: 84 ESNNILDNLLSRMEQYANNLEALVEERTADYLEEKRKCEELLYQLLPKDYES-NNILDNL 142
E ++ L+ ++ LE E LE+ K +E L + L ++ E N
Sbjct: 508 EFKEEINVLIEKLSALEKELEQKNEH-----LEKLLKEQEKLKKELEQEMEELKERERNK 562
Query: 143 LSRMEQYANN-LEALVEE 159
+E+ A L+AL +E
Sbjct: 563 KLELEKEAQEALKALKKE 580
>gnl|CDD|225227 COG2352, Ppc, Phosphoenolpyruvate carboxylase [Energy production
and conversion].
Length = 910
Score = 28.4 bits (64), Expect = 7.3
Identities = 26/119 (21%), Positives = 39/119 (32%), Gaps = 36/119 (30%)
Query: 28 VGFTSLSAESTPLQVVELLNDLYTCFDSVIEN----------FDVYKVIFVVLSEIYSIS 77
G + E ELL DLY + S+ D+ + + E++
Sbjct: 347 AGEEGVGPEPPYTSPEELLEDLYAIYQSLHACGMEILADGRLLDLLRRV-----EVFGFH 401
Query: 78 LAALDYESNNILDNLLSRMEQYANNLEALVEERT------ADYLE--EKRKCEELLYQL 128
L +LD + Q + E V E ADY E+ K LL +L
Sbjct: 402 LVSLD-------------IRQESTRHEEAVAELLRYAGLGADYSSLSEEDKQAFLLREL 447
>gnl|CDD|115928 pfam07303, Occludin_ELL, Occludin homology domain. This domain
represents a conserved region approximately 100 residues
long within eukaryotic occludin proteins and the RNA
polymerase II elongation factor ELL. Occludin is an
integral membrane protein that localises to tight
junctions, while ELL is an elongation factor that can
increase the catalytic rate of RNA polymerase II
transcription by suppressing transient pausing by
polymerase at multiple sites along the DNA. This shared
domain is thought to mediate protein interactions.
Length = 101
Score = 26.5 bits (59), Expect = 8.1
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 15/78 (19%)
Query: 53 FDSVIENFDVYKVIFVVLSEIYSISLAALDYESNNILDNLLSRMEQYANNLEALVEE--- 109
FDS ++ YK + + I + L LD E LD+L ++Y + A ++E
Sbjct: 17 FDS---DYQEYKELQAEVDAI-NKRLQQLDAE----LDSLPEGSQEYKT-VAAQLDEYNR 67
Query: 110 ---RTADYLEEKRKCEEL 124
R+ DY E+K +C+ L
Sbjct: 68 LKKRSPDYQEKKERCKYL 85
>gnl|CDD|219916 pfam08580, KAR9, Yeast cortical protein KAR9. The KAR9 protein in
Saccharomyces cerevisiae is a cytoskeletal protein
required for karyogamy, correct positioning of the
mitotic spindle and for orientation of cytoplasmic
microtubules. KAR9 localises at the shmoo tip in mating
cells and at the tip of the growing bud in anaphase.
Length = 626
Score = 28.3 bits (63), Expect = 8.7
Identities = 28/119 (23%), Positives = 46/119 (38%), Gaps = 23/119 (19%)
Query: 70 LSEIYSISLAALDYESNNIL------DNLLSRMEQYANNLEALVEERTADYLEEKRKCEE 123
L ++ I L DY S ++L L+S + QY D+++E R +
Sbjct: 6 LFQLTEILLDQFDYLSESLLTAVNSRRALVSAVLQYL------------DWIQEGR---D 50
Query: 124 LLYQLLPKDYESNNILDNLLSRMEQYANNLE--ALVEERTADYLEEKRKCEELLYQLLP 180
LLY L + LL +E YA E +L E+ + + +L + P
Sbjct: 51 LLYGLREGIENIEKAISKLLELVEAYAGGNEDDSLNEDIHNSLFDLIEEVSDLELDIKP 109
>gnl|CDD|184039 PRK13411, PRK13411, molecular chaperone DnaK; Provisional.
Length = 653
Score = 28.2 bits (63), Expect = 9.4
Identities = 29/91 (31%), Positives = 38/91 (41%), Gaps = 12/91 (13%)
Query: 95 RMEQYANNLEALVEERTADYLEEKRKCEELLYQLLPKDYES---NN---ILDNLLSRMEQ 148
RM Q A A + R +E K + + LLY YES N I + L R EQ
Sbjct: 509 RMRQEAE-KYAEEDRRRKQLIELKNQADSLLY-----SYESTLKENGELISEELKQRAEQ 562
Query: 149 YANNLEALVEERTADYLEEKRKCEELLYQLL 179
LEA + + E K++ EE LL
Sbjct: 563 KVEQLEAALTDPNISLEELKQQLEEFQQALL 593
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.134 0.371
Gapped
Lambda K H
0.267 0.0748 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,527,159
Number of extensions: 1820929
Number of successful extensions: 1898
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1879
Number of HSP's successfully gapped: 94
Length of query: 368
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 270
Effective length of database: 6,590,910
Effective search space: 1779545700
Effective search space used: 1779545700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.9 bits)