RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7403
(368 letters)
>3uvj_A Guanylate cyclase soluble subunit alpha-3; nitric oxide, structural
genomics, structural genomics conso SGC, CGMP
biosynthesis; 2.08A {Homo sapiens}
Length = 225
Score = 136 bits (344), Expect = 2e-38
Identities = 31/82 (37%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 185 GPCVAGVVGLKMPRYCLFGDTVNTASRMESNGQALKIHVSPFTKEVLDTFGTFDLELRGE 244
G AGVVG+KMPRYCLFG+ V A++ ES KI+VSP T +L F R
Sbjct: 115 GSVFAGVVGVKMPRYCLFGNNVTLANKFESCSVPRKINVSPTTYRLLKDCPGFVFTPRSR 174
Query: 245 VEMK----VETIGDAYMVVSGL 262
E+ E G + + +
Sbjct: 175 EELPPNFPSEIPGICHFLDAYQ 196
Score = 118 bits (298), Expect = 8e-32
Identities = 30/57 (52%), Positives = 41/57 (71%)
Query: 9 GQSVVAETYDSVTIYFSDIVGFTSLSAESTPLQVVELLNDLYTCFDSVIENFDVYKV 65
GQ V A+ + +VT+ FSDIVGFT++ ++ +PLQV+ +LN LYT FD DVYKV
Sbjct: 4 GQVVQAKKFSNVTMLFSDIVGFTAICSQCSPLQVITMLNALYTRFDQQCGELDVYKV 60
Score = 103 bits (259), Expect = 3e-26
Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 7/78 (8%)
Query: 232 DTFGTFD--LELRGEVEMKVETIGDAYMVVSGLPMRNGNLHAREIARMSLALLDTVVTFT 289
+ FD V KVETIGDAY V GL + + HA +IA M+L +++
Sbjct: 43 ALYTRFDQQCGELD-VY-KVETIGDAYCVAGGLH-KESDTHAVQIALMALKMMELSDEVM 99
Query: 290 IRHRPTDQLKLRIGMHTG 307
H +K+RIG+H+G
Sbjct: 100 SPHGE--PIKMRIGLHSG 115
Score = 66.6 bits (163), Expect = 6e-13
Identities = 15/32 (46%), Positives = 24/32 (75%)
Query: 328 GQSVVAETYDSVTIYFSDIVGFTSLSAESTPE 359
GQ V A+ + +VT+ FSDIVGFT++ ++ +P
Sbjct: 4 GQVVQAKKFSNVTMLFSDIVGFTAICSQCSPL 35
>1ab8_A Adenylyl cyclase; lyase, complex (transferase-inhibitor); HET: FOK;
2.20A {Rattus norvegicus} SCOP: d.58.29.1 PDB: 1azs_B*
1cjk_B* 1cjt_B* 1cju_B* 1cjv_B* 1cs4_B* 1tl7_B* 1u0h_B*
2gvd_B* 2gvz_B* 3c14_B* 3c15_B* 3c16_B* 3e8a_B* 3g82_B*
3maa_B* 1cul_B*
Length = 220
Score = 132 bits (335), Expect = 4e-37
Identities = 28/64 (43%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 185 GPCVAGVVGLKMPRYCLFGDTVNTASRMESNGQALKIHVSPFTKEVLDTFGTFDLELRGE 244
GP +AGV+G + P+Y ++G+TVN ASRM+S G KI V+ T +L T G + RG
Sbjct: 133 GPVIAGVIGAQKPQYDIWGNTVNVASRMDSTGVLDKIQVTEETSLILQTLG-YTCTCRGI 191
Query: 245 VEMK 248
+ +K
Sbjct: 192 INVK 195
Score = 97.7 bits (244), Expect = 4e-24
Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 7/64 (10%)
Query: 9 GQSVVAETYDSVTIYFSDIVGFTSLSAES----TPLQVVELLNDLYTCFDSVIEN---FD 61
+ + ++YD V + F+ I F ES L+ + LLN++ FD ++
Sbjct: 4 NEELYHQSYDCVCVMFASIPDFKEFYTESDVNKEGLECLRLLNEIIADFDDLLSKPKFSG 63
Query: 62 VYKV 65
V K+
Sbjct: 64 VEKI 67
Score = 93.5 bits (233), Expect = 2e-22
Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 19/89 (21%)
Query: 229 EVLDTFGTFDLELRGEVEMKVETIGDAYMVVSGLPMRNGNLHARE----------IARMS 278
++L +E K++TIG YM +GL HA+E + +
Sbjct: 54 DLLSKPKFSGVE-------KIKTIGSTYMAATGLSAIPSQEHAQEPERQYMHIGTMVEFA 106
Query: 279 LALLDTVVTFTIRHRPTDQLKLRIGMHTG 307
AL+ + I + KLR+G++ G
Sbjct: 107 YALVGKL--DAINKHSFNDFKLRVGINHG 133
Score = 57.2 bits (139), Expect = 8e-10
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 328 GQSVVAETYDSVTIYFSDIVGFTSLSAESTPELRG 362
+ + ++YD V + F+ I F ES G
Sbjct: 4 NEELYHQSYDCVCVMFASIPDFKEFYTESDVNKEG 38
>2wz1_A Guanylate cyclase soluble subunit beta-1; lyase, GUCY1,
metal-binding, CGMP biosynthesis, nucleotide-B cyclase,
GUCY1B3, GTP-binding; 1.63A {Homo sapiens} PDB: 3uvj_B
Length = 219
Score = 129 bits (327), Expect = 4e-36
Identities = 34/68 (50%), Positives = 43/68 (63%), Gaps = 4/68 (5%)
Query: 185 GPCVAGVVGLKMPRYCLFGDTVNTASRMESNGQALKIHVSPFTKEVL----DTFGTFDLE 240
G V GV+G +MPRYCLFG+TVN SR E+ G+ KI+VS +T L ++ F LE
Sbjct: 119 GEVVTGVIGQRMPRYCLFGNTVNLTSRTETTGEKGKINVSEYTYRCLMSPENSDPQFHLE 178
Query: 241 LRGEVEMK 248
RG V MK
Sbjct: 179 HRGPVSMK 186
Score = 105 bits (264), Expect = 6e-27
Identities = 47/197 (23%), Positives = 75/197 (38%), Gaps = 54/197 (27%)
Query: 200 CLFGDTVN---TASRMESNGQALKIHVS----PFTK--EVLDTFGTFDLELRGEVEMKVE 250
LF V S+ S A+KI V+ +T+ + D+ + KVE
Sbjct: 15 ILFSGIVGFNAFCSKHASGEGAMKI-VNLLNDLYTRFDTLTDSRKNPFVY-------KVE 66
Query: 251 TIGDAYMVVSGLPMRNGNLHAREIARMSLALLDTVVTFTIRHRPTDQLKLRIGMHTG-C- 308
T+GD YM VSGLP HAR I ++L +++ + +++ IG+HTG
Sbjct: 67 TVGDKYMTVSGLP-EPCIHHARSICHLALDMMEIAGQVQVDGES---VQITIGIHTGEVV 122
Query: 309 -----RDKFR-----DQSSFVSVASQLILGQS--------VVAETYDSVTIYFSDIVGFT 350
+ R + V++ S+ ++ V TY + + F
Sbjct: 123 TGVIGQRMPRYCLFGNT---VNLTSRT---ETTGEKGKINVSEYTYRCLMSPENSDPQFH 176
Query: 351 SLSAESTPELRGEVEMK 367
E RG V MK
Sbjct: 177 L-------EHRGPVSMK 186
Score = 103 bits (258), Expect = 4e-26
Identities = 28/64 (43%), Positives = 40/64 (62%), Gaps = 7/64 (10%)
Query: 9 GQSVVAETYDSVTIYFSDIVGFTSLSAESTP----LQVVELLNDLYTCFDSVIE---NFD 61
+ V A+ YD+VTI FS IVGF + ++ +++V LLNDLYT FD++ + N
Sbjct: 2 KRPVPAKRYDNVTILFSGIVGFNAFCSKHASGEGAMKIVNLLNDLYTRFDTLTDSRKNPF 61
Query: 62 VYKV 65
VYKV
Sbjct: 62 VYKV 65
Score = 65.1 bits (159), Expect = 2e-12
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 328 GQSVVAETYDSVTIYFSDIVGFTSLSAESTPELRGE--VEM 366
+ V A+ YD+VTI FS IVGF + ++ V +
Sbjct: 2 KRPVPAKRYDNVTILFSGIVGFNAFCSKHASGEGAMKIVNL 42
>1yk9_A Adenylate cyclase; beta-alpha-beta sandwich, structural genomics,
PSI, protein structure initiative; 2.70A {Mycobacterium
tuberculosis}
Length = 204
Score = 128 bits (323), Expect = 1e-35
Identities = 30/64 (46%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 185 GPCVAGVVGLKMPRYCLFGDTVNTASRMESNGQALKIHVSPFTKEVLDTFGTFDLELRGE 244
GP VAGVVG + RYC++GD VN ASRMES +I V E L F L RG
Sbjct: 111 GPVVAGVVGSRRFRYCVWGDAVNVASRMESTDSVGQIQVPDEVYERLK--DDFVLRERGH 168
Query: 245 VEMK 248
+ +K
Sbjct: 169 INVK 172
Score = 113 bits (285), Expect = 4e-30
Identities = 18/56 (32%), Positives = 37/56 (66%)
Query: 10 QSVVAETYDSVTIYFSDIVGFTSLSAESTPLQVVELLNDLYTCFDSVIENFDVYKV 65
++++A+ YD ++ F+DIVGFT ++ + P +V L+ LY+ FD +++ + K+
Sbjct: 1 RNIIADKYDEASVLFADIVGFTERASSTAPADLVRFLDRLYSAFDELVDQHGLEKI 56
Score = 98.8 bits (247), Expect = 1e-24
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Query: 232 DTFGTFD-LELRGEVEMKVETIGDAYMVVSGLPMRNGNLHAREIARMSLALLDTVVTFTI 290
+ FD L + +E K+E GD+YMVVSG+P + H + +A +L + +
Sbjct: 39 RLYSAFDELVDQHGLE-KIEVSGDSYMVVSGVPRPRPD-HTQALADFALDMTNVAAQLKD 96
Query: 291 RHRPTDQLKLRIGMHTG 307
+ + LR+G+ TG
Sbjct: 97 PRG--NPVPLRVGLATG 111
Score = 64.2 bits (157), Expect = 3e-12
Identities = 11/31 (35%), Positives = 22/31 (70%)
Query: 329 QSVVAETYDSVTIYFSDIVGFTSLSAESTPE 359
++++A+ YD ++ F+DIVGFT ++ + P
Sbjct: 1 RNIIADKYDEASVLFADIVGFTERASSTAPA 31
>3et6_A Soluble guanylyl cyclase beta; guanylate cyclase, dimethylarsenic,
lyase, membrane, transmembrane; 2.55A {Chlamydomonas
reinhardtii} PDB: 3et6_B
Length = 190
Score = 115 bits (290), Expect = 5e-31
Identities = 36/64 (56%), Positives = 46/64 (71%)
Query: 185 GPCVAGVVGLKMPRYCLFGDTVNTASRMESNGQALKIHVSPFTKEVLDTFGTFDLELRGE 244
GP VAGVVG KMPR+ LFGDTVNTASRMES+G+A +IH+S L + F++ RG
Sbjct: 111 GPVVAGVVGRKMPRFXLFGDTVNTASRMESHGEAGQIHISEACYCCLRSKERFEIRERGN 170
Query: 245 VEMK 248
+ +K
Sbjct: 171 ITVK 174
Score = 103 bits (260), Expect = 1e-26
Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 232 DTFGTFD--LELRGEVEMKVETIGDAYMVVSGLPMRNGNLHAREIARMSLALLDTVVTFT 289
+ + FD +E ++ KVETIGDAYMVV + + + HA + +L + +
Sbjct: 38 ELYQRFDAAIEEYPQLY-KVETIGDAYMVVCNVTVPCDD-HADVLLEFALRMHEEA--SR 93
Query: 290 IRHRPTDQLKLRIGMHTG 307
+ + +++R+GMH+G
Sbjct: 94 VASSLGEPVRIRVGMHSG 111
Score = 102 bits (256), Expect = 4e-26
Identities = 26/56 (46%), Positives = 39/56 (69%), Gaps = 1/56 (1%)
Query: 11 SVVAETYDSVTIYFSDIVGFTSLSAESTPLQVVELLNDLYTCFDSVIENF-DVYKV 65
S A+ + T+ FSDIVGFT +++ S+PL+V LL++LY FD+ IE + +YKV
Sbjct: 1 SAPAQEHPEATVLFSDIVGFTEIASRSSPLEVXSLLDELYQRFDAAIEEYPQLYKV 56
Score = 62.3 bits (152), Expect = 1e-11
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 330 SVVAETYDSVTIYFSDIVGFTSLSAESTPE 359
S A+ + T+ FSDIVGFT +++ S+P
Sbjct: 1 SAPAQEHPEATVLFSDIVGFTEIASRSSPL 30
>1azs_A VC1; complex (lyase/hydrolase), hydrolase, signal transducing
protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A
{Canis lupus familiaris} SCOP: d.58.29.1 PDB: 1cs4_A*
1u0h_A* 2gvd_A* 2gvz_A* 3c14_A* 3c15_A* 3c16_A* 3e8a_A*
3g82_A* 3maa_A* 1cul_A* 1cjk_A* 1cju_A* 1cjv_A* 1cjt_A*
1tl7_A*
Length = 220
Score = 113 bits (284), Expect = 9e-30
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 185 GPCVAGVVGLKMPRYCLFGDTVNTASRMESNGQALKIHVSPFTKEVLDTFGTFDLELRGE 244
G GV+GL+ ++ ++ + V A+ ME+ G+A +IH++ T L+ G +++E
Sbjct: 135 GRVHCGVLGLRKWQFDVWSNDVTLANHMEAGGKAGRIHITKATLSYLN--GDYEVEPGCG 192
Query: 245 VEMKVETIG 253
E
Sbjct: 193 GERNAYLKE 201
Score = 105 bits (264), Expect = 5e-27
Identities = 18/61 (29%), Positives = 37/61 (60%)
Query: 5 QLILGQSVVAETYDSVTIYFSDIVGFTSLSAESTPLQVVELLNDLYTCFDSVIENFDVYK 64
+ ++ + + +D+V+I F+DI GFTSL+++ T ++V LN+L+ FD + +
Sbjct: 20 EDMMFHKIYIQKHDNVSILFADIEGFTSLASQCTAQELVMTLNELFARFDKLAAENHCLR 79
Query: 65 V 65
+
Sbjct: 80 I 80
Score = 95.8 bits (239), Expect = 2e-23
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Query: 232 DTFGTFD-LELRGEVEMKVETIGDAYMVVSGLPMRNGNLHAREIARMSLALLDTVVTFTI 290
+ F FD L +++ +GD Y VSGLP + HA M + +++ +
Sbjct: 63 ELFARFDKLAAENHCL-RIKILGDCYYCVSGLPEARAD-HAHCCVEMGMDMIEAISLV-- 118
Query: 291 RHRPTDQLKLRIGMHTG 307
R + +R+G+H+G
Sbjct: 119 REMTGVNVNMRVGIHSG 135
Score = 60.7 bits (148), Expect = 6e-11
Identities = 12/41 (29%), Positives = 27/41 (65%)
Query: 319 VSVASQLILGQSVVAETYDSVTIYFSDIVGFTSLSAESTPE 359
++ + ++ + + +D+V+I F+DI GFTSL+++ T +
Sbjct: 15 INAKQEDMMFHKIYIQKHDNVSILFADIEGFTSLASQCTAQ 55
>1fx2_A Receptor-type adenylate cyclase gresag 4.1; CAMP, trypanosomes,
adenylyl cyclases, monomer-dimer, catalysis, lyase;
1.46A {Trypanosoma brucei} SCOP: d.58.29.1 PDB: 1fx4_A
Length = 235
Score = 81.0 bits (200), Expect = 7e-18
Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 3/66 (4%)
Query: 185 GPCVAGVVGLKMPRYCLFGDTVNTASRMESNGQALKIHVSPFTKEVLDT--FGTFDLELR 242
G C + Y +G T N A+R ES ++ ++ L D+
Sbjct: 141 GLCDIRHDEV-TKGYDYYGRTPNMAARTESVANGGQVLMTHAAYMSLSAEDRKQIDVTAL 199
Query: 243 GEVEMK 248
G+V ++
Sbjct: 200 GDVALR 205
Score = 72.6 bits (178), Expect = 6e-15
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 10 QSVVAETYDSVTIYFSDIVGFTSLSAESTPLQVVELLNDLYTCFDSVIENFDVYKVIFV 68
E D VT+ F+DI T+L + P + + + + S+I + Y+V V
Sbjct: 3 NRAPKEPTDPVTLIFTDIESSTALW-AAHPDLMPDAVAAHHRMVRSLIGRYKCYEVKTV 60
Score = 59.9 bits (145), Expect = 1e-10
Identities = 23/138 (16%), Positives = 46/138 (33%), Gaps = 43/138 (31%)
Query: 201 LFGDTVNTASRMESNG----QALKIHVSPFTKEVLDTFGTFDLELRGEVEMKVETIGDAY 256
+F D ++ + ++ A+ H + +V+T+GD++
Sbjct: 16 IFTDIESSTALWAAHPDLMPDAVAAHHRMVRSLIGRYKCY-----------EVKTVGDSF 64
Query: 257 MVVSGLPMRNGNLHAREIARMSLA-------LLDTVVTFTIRHRPTD------------- 296
M+ S P A+E+ L L D+ F + +
Sbjct: 65 MIASKSPFAAVQ-LAQELQLCFLHHDWGTNALDDSYREFEEQRAEGECEYTPPTAHMDPE 123
Query: 297 -------QLKLRIGMHTG 307
L++R+G+HTG
Sbjct: 124 VYSRLWNGLRVRVGIHTG 141
Score = 45.6 bits (108), Expect = 7e-06
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 329 QSVVAETYDSVTIYFSDIVGFTSLSAESTPEL 360
E D VT+ F+DI T+L + P+L
Sbjct: 3 NRAPKEPTDPVTLIFTDIESSTALW-AAHPDL 33
>1y10_A Hypothetical protein RV1264/MT1302; adenylyl cyclase fold, lyase;
HET: 1PE; 2.30A {Mycobacterium tuberculosis} PDB:
1y11_A*
Length = 407
Score = 71.9 bits (176), Expect = 5e-14
Identities = 12/65 (18%), Positives = 22/65 (33%), Gaps = 1/65 (1%)
Query: 1 SVASQLILGQSVVAETYDSVTIYFSDIVGFTSLSAESTPLQVVELLNDLYTCFDSVIENF 60
+ VT+ F+D+VGFT L + ++ L L +
Sbjct: 197 EAVNAGERAAGKPLPGARQVTVAFADLVGFTQLGEVVSAEELGHLAGRLAGLARDLTAP- 255
Query: 61 DVYKV 65
V+ +
Sbjct: 256 PVWFI 260
Score = 69.6 bits (170), Expect = 3e-13
Identities = 14/67 (20%), Positives = 22/67 (32%), Gaps = 10/67 (14%)
Query: 185 GPCVAGVVGLKMPRYCLFGDTVNTASRMESNGQALKIHVSPFTKEVLD---TFGTFDLEL 241
G V+ FG VN ASR+ + + V+ +E L F
Sbjct: 304 GMAVSRA-------GDWFGSPVNVASRVTGVARPGAVLVADSVREALGDAPEADGFQWSF 356
Query: 242 RGEVEMK 248
G ++
Sbjct: 357 AGPRRLR 363
Score = 58.8 bits (142), Expect = 7e-10
Identities = 38/222 (17%), Positives = 62/222 (27%), Gaps = 62/222 (27%)
Query: 93 LSRM-EQYANNLEALVEERTADYLEEKRKCEELLYQLLPKDYESNNILDNLLSRMEQY-- 149
LS E + A L+ + + L+ Q++P LL M Q
Sbjct: 138 LSHAAEAMRYTALEAIMRPGATELDIAKGSQALVSQIVP-----------LLGPMIQDML 186
Query: 150 ANNLEALVEERTADYLEEKRKCEELLYQLLPNCYQGPCVAGVVGLKMPRYCLFGDTVNTA 209
L ++E + E + + V F D V
Sbjct: 187 FMQLRHMMETEAVNAGERAAGKPLPGARQV-----------TV--------AFADLVGFT 227
Query: 210 SRMESNGQALKIHVSPFT-KEVLDTFGTFDLEL---RGEVEMKVETIGDAYMVVSGLPMR 265
E VS + +L ++TIGDA M+V P
Sbjct: 228 QLGE--------VVSAEELGHLAGRLAGLARDLTAPPVW---FIKTIGDAVMLVCPDP-- 274
Query: 266 NGNLHAREIARMSLALLDTVVTFTIRHRPTDQLKLRIGMHTG 307
+ L L++ V + +LR G+ +G
Sbjct: 275 ------APLLDTVLKLVEVV------DTDNNFPRLRAGVASG 304
Score = 49.6 bits (118), Expect = 9e-07
Identities = 10/40 (25%), Positives = 15/40 (37%)
Query: 320 SVASQLILGQSVVAETYDSVTIYFSDIVGFTSLSAESTPE 359
+ VT+ F+D+VGFT L + E
Sbjct: 197 EAVNAGERAAGKPLPGARQVTVAFADLVGFTQLGEVVSAE 236
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 59.3 bits (143), Expect = 1e-09
Identities = 76/493 (15%), Positives = 142/493 (28%), Gaps = 165/493 (33%)
Query: 1 SVASQL------ILGQSVVAETYD----SVTIYFSDIVGFTSLSAESTPL-QVVELLNDL 49
+ASQL IL + D + +G+ S E + + Q ++LN
Sbjct: 28 FIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLC 87
Query: 50 YTCFDSVI-ENFDVYKVIFVVLSEIYSISLAALD-----YESNNILDNLLSRMEQYANNL 103
T F++ E D++ + +L E + + + + + + A L
Sbjct: 88 LTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSA--L 145
Query: 104 EALVEERTA-------------DYLEEKRKCEELLYQLLPKDYESNNILDNLLSRMEQYA 150
V E A DY EE R LY + Y ++ +L+ +
Sbjct: 146 FRAVGEGNAQLVAIFGGQGNTDDYFEELRD----LY----QTYHV--LVGDLIKFSAETL 195
Query: 151 NNLEALVEERTADY---------LEEKRK---CEEL-----------LYQLLPNCYQGPC 187
+ L + + LE + L + QL Y
Sbjct: 196 SELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLA--HYVVTA 253
Query: 188 VAGVVGLKMP---RYCLFGDTV--------------NTASRMESNG-QALKI--HVSPFT 227
++G P R L G T ++ + +A+ + +
Sbjct: 254 K--LLGFT-PGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIG--- 307
Query: 228 KEVLDTFGTFDLELRGEVEMKVETIGD---AYM-VVSGLP-------MRNGNLHAREIAR 276
+ + L + + + M +S L + N H +
Sbjct: 308 VRCYEAYPNTSLPP--SILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQ 365
Query: 277 MSLALLDT----VVT----------FTIR----------HR-PTDQLKLRIGM------- 304
+ ++L++ VV+ T+R R P + KL+
Sbjct: 366 VEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVAS 425
Query: 305 --HTGCRDKFRDQSSFVSVASQLIL----GQSVVAETYD-SVTIYF----SDIVGFTSLS 353
H S + AS LI +V D + +Y SD+ LS
Sbjct: 426 PFH----------SHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDL---RVLS 472
Query: 354 AESTPELRGEVEM 366
+ + V+
Sbjct: 473 GSISERI---VDC 482
Score = 36.2 bits (83), Expect = 0.019
Identities = 56/350 (16%), Positives = 99/350 (28%), Gaps = 155/350 (44%)
Query: 11 SVVAETYDSVTIYFSDIVGFTSLSA--ESTPLQVVEL--------LNDLYT--CFDSVIE 58
+ ++ +F D GF S+ + P+ + + + Y+ F+++++
Sbjct: 1640 KAAQDVWNRADNHFKDTYGF-SILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVD 1698
Query: 59 NFDVYKVIFVVLSEIYSISLAALDYESNNILDNLLSRME--QYANNLEALVEERTADY-- 114
+ IF ++E + + S LLS + Q A L L+E A +
Sbjct: 1699 GKLKTEKIFKEINE----HSTSYTFRSE---KGLLSATQFTQPA--L-TLME--KAAFED 1746
Query: 115 LEEKRKCEELLYQLLPKDY--------ESNNILDNLLSRMEQYANNLEALVEERTADYLE 166
L+ K L+P D E YA AL
Sbjct: 1747 LKSK--------GLIPADATFAGHSLGE--------------YA----ALA--------- 1771
Query: 167 EKRKCEELLYQLLPNCYQGPCVAGVVGLKMPRYCLFGDTVNT-ASRMESNGQALKIHVSP 225
+A V M V R G ++ P
Sbjct: 1772 --------------------SLADV----MS----IESLVEVVFYR----GMTMQ-VAVP 1798
Query: 226 FTKEVLDTFG-----------TFDLELRGEVEMKVETIGDA----------------YMV 258
+ +G +F E ++ VE +G Y V
Sbjct: 1799 RDELGRSNYGMIAINPGRVAASFSQE---ALQYVVERVGKRTGWLVEIVNYNVENQQY-V 1854
Query: 259 VSGLPMRNGNLHAREIARMSLALLDTVVTF--TIRHRPTDQLKLRIGMHT 306
+ G+L A LDTV I+ + D ++L+ +
Sbjct: 1855 AA------GDLRA----------LDTVTNVLNFIKLQKIDIIELQKSLSL 1888
>3hls_A Guanylate cyclase soluble subunit beta-1; coiled-coil domain,
signaling helix, S-helix, CGMP biosynthesis, cytoplasm,
GTP-binding, heme, iron; 2.15A {Rattus norvegicus}
Length = 66
Score = 48.5 bits (116), Expect = 4e-08
Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 4/48 (8%)
Query: 84 ESNNILDNLLSRMEQYANNLEALVEERTADYLEEKRKCEELLYQLLPK 131
E L +E + L+ + +EK+K + LLY +LP
Sbjct: 14 EQFREEYKLTQELEMLTDRLQLTLRALE----DEKKKTDTLLYSVLPP 57
Score = 47.4 bits (113), Expect = 1e-07
Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
Query: 134 ESNNILDNLLSRMEQYANNLEALVEERTADYLEEKRKCEELLYQLLP 180
E L +E + L+ + +EK+K + LLY +LP
Sbjct: 14 EQFREEYKLTQELEMLTDRLQLTLRALE----DEKKKTDTLLYSVLP 56
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 52.5 bits (125), Expect = 1e-07
Identities = 46/322 (14%), Positives = 98/322 (30%), Gaps = 85/322 (26%)
Query: 9 GQSV-VAETYDS--VTIYFSDIVGFTSLSAESTPLQVVELLNDLYTCFD-SVIENFDVYK 64
G++ + S V + + +L ++P V+E+L L D + D
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221
Query: 65 VIFVVLSEI------------YSISLAALD-YESNNILD--NLLSRM---EQYANNLEAL 106
I + + I Y L L ++ + NL ++ ++ + L
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFL 281
Query: 107 VEERTADY-LEE------KRKCEELL-------YQLLPKDYESNN---------ILDNLL 143
T L+ + + LL Q LP++ + N + + L
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL 341
Query: 144 SRMEQYAN-NLEALVE--ERTADYLE--EKRKCEELLYQLLPNCYQGPCVAGVVGLKMPR 198
+ + + + N + L E + + LE E RK + L
Sbjct: 342 ATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM----FDRL------------------- 378
Query: 199 YCLFGDTVNTASRMESNGQALKI----HVSPFTKEVLDTFGTFDLELRGEVEMKVETIGD 254
+F + + + L + + V++ + L + E + +I
Sbjct: 379 -SVFPPSAHIPT------ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI-SIPS 430
Query: 255 AYMVVSGLPMRNGNLHAREIAR 276
Y+ + LH +
Sbjct: 431 IYLELKVKLENEYALHRSIVDH 452
Score = 44.1 bits (103), Expect = 7e-05
Identities = 48/357 (13%), Positives = 103/357 (28%), Gaps = 99/357 (27%)
Query: 47 NDLYTCF-DSVIENFDVYKVIFVVLSEIYSISLAALDYE----SNNILDNLLSRMEQYAN 101
D+ + F D+ ++NFD V D S +D+++ +
Sbjct: 19 KDILSVFEDAFVDNFDCKDV---------------QDMPKSILSKEEIDHII----MSKD 59
Query: 102 NLEALVEERTADYLEEKRK--CEELLYQLLPKDYESNNILDNLLSRMEQYANNLEALVEE 159
+ R L K++ ++ + ++L +Y+ ++ + + Q + +E+
Sbjct: 60 AVSGT--LRLFWTLLSKQEEMVQKFVEEVLRINYKF--LMSPIKTEQRQPSMMTRMYIEQ 115
Query: 160 RTADY-------------LEEKRKCEELLYQLLPNCYQGPCVAGVVGLKMPRYCLFGDTV 206
R Y L+ K + L +L P + + GV+G G T
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPA--KNVLIDGVLG--------SGKTW 165
Query: 207 NTASRMESNGQALKIHVSPF------------TKEVLDTFGTFDLELRGEVEMKVETIGD 254
S K+ F + VL+ ++ + + +
Sbjct: 166 VALDVCLSYKVQCKM---DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222
Query: 255 AYMVVSGLPMRNGNLHAREIARMSLALLD------TVVTFTIRHRPTDQLKLRIGMHTGC 308
+ + + L + L +L F + C
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL----------------SC 266
Query: 309 RDKF--RDQS--SFVSVA--SQLILGQSVVAETYDSVTIYFSDIVGFTSLSAESTPE 359
+ R + F+S A + + L + T D V + + P
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD---CRPQDLPR 320
Score = 43.3 bits (101), Expect = 1e-04
Identities = 46/297 (15%), Positives = 78/297 (26%), Gaps = 123/297 (41%)
Query: 24 FSDIVG--FTSLSAEST---PLQV---VELLNDLYTCFDSVIENFDVYKVIFVVLSEIYS 75
+ L E P ++ E + D + +N+ V L+ I
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRD----GLATWDNWK--HVNCDKLTTIIE 360
Query: 76 ISLAALD-------Y-------ESNNILDNLLSRM---------EQYANNLE--ALVEER 110
SL L+ + S +I LLS + N L +LVE++
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ 420
Query: 111 TAD--------YLEEKRKCEELL---------YQLLPKDYESNNI--------------- 138
+ YLE K K E Y + PK ++S+++
Sbjct: 421 PKESTISIPSIYLELKVKLENEYALHRSIVDHYNI-PKTFDSDDLIPPYLDQYFYSHIGH 479
Query: 139 ------------------LD----------------------NLLSRMEQYANNL---EA 155
LD N L +++ Y + +
Sbjct: 480 HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDP 539
Query: 156 LVEERTADYLEEKRKCEELLYQLLPNCYQGPCVAGV-VGLKMPRYCLFGDTVNTASR 211
E L+ K EE N + + L +F + R
Sbjct: 540 KYERLVNAILDFLPKIEE-------NLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
Score = 37.9 bits (87), Expect = 0.006
Identities = 55/373 (14%), Positives = 107/373 (28%), Gaps = 101/373 (27%)
Query: 24 FSDIVGFTSLSAESTPLQVVELLNDLYTCFDSVIENFDVYKVIFV--VLSEIYSISLAAL 81
I+ + L + S E + + FV VL Y ++ +
Sbjct: 51 IDHIIM------SKDAVSGTLRL---FWTLLSKQEE--MVQK-FVEEVLRINYKFLMSPI 98
Query: 82 DYESN-------------NILDNL--------LSRMEQYANNLEALVEERTADYL----- 115
E + L N +SR++ Y +AL+E R A +
Sbjct: 99 KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV 158
Query: 116 --------------EEKRKC-----------------EELLYQLLPKDYESNNILDNLLS 144
K +C E +L L Y+ + +
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218
Query: 145 RMEQYANNLEALVEERTADYLEEKRKCEELLYQLLPNCYQGPCVAGV-VGLKM---PRYC 200
+ ++ + L+ K LL +L N + K+ R+
Sbjct: 219 HSSNIKLRIHSI-QAELRRLLKSKPYENCLL--VLLNVQNAKAWNAFNLSCKILLTTRFK 275
Query: 201 LFGDTVNTASRMESNGQALKIHVSPFTK-EVLDTFGTFDLELRGEVEMKVETIGDAYMVV 259
D ++ A+ +L H T EV + L+ R + ++ E + +
Sbjct: 276 QVTDFLSAATTTHI---SLDHHSMTLTPDEVKSLLLKY-LDCRPQ-DLPREVLTTNPRRL 330
Query: 260 S--GLPMRNGNLHAREIARMSLALLDTVVTFTIRH-RPTDQLKLRIGMHTGCRDKFRDQS 316
S +R+G ++ L T++ ++ P + R F S
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY-----------RKMFDRLS 379
Query: 317 SF---VSVASQLI 326
F + + L+
Sbjct: 380 VFPPSAHIPTILL 392
>1wc3_A Adenylate cyclase; soluble adenylyl cyclase, CAMP signaling,
lyase; HET: APC; 1.9A {Spirulina platensis} SCOP:
d.58.29.1 PDB: 1wc0_A* 1wc4_A* 1wc5_A* 2bw7_A* 1wc1_A*
1wc6_A*
Length = 219
Score = 49.5 bits (119), Expect = 4e-07
Identities = 16/32 (50%), Positives = 19/32 (59%)
Query: 20 VTIYFSDIVGFTSLSAESTPLQVVELLNDLYT 51
+TI FSDIVGFT +S V ELLN+
Sbjct: 28 ITILFSDIVGFTRMSNALQSQGVAELLNEYLG 59
Score = 43.7 bits (104), Expect = 3e-05
Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 6/66 (9%)
Query: 185 GPCVAGVVG--LKMPRYCLFGDTVNTASRMESNGQALKIHVSPFTKEVLDTFGTFDLELR 242
G V G+ G + + G +VN A+R++ I VS + + ++ R
Sbjct: 140 GMAVVGLFGSQERS-DFTAIGPSVNIAARLQEATAPNSIMVSAMVAQYV---PDEEIIKR 195
Query: 243 GEVEMK 248
+E+K
Sbjct: 196 EFLELK 201
Score = 38.7 bits (91), Expect = 0.001
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 339 VTIYFSDIVGFTSLSAESTPE 359
+TI FSDIVGFT +S +
Sbjct: 28 ITILFSDIVGFTRMSNALQSQ 48
Score = 33.3 bits (77), Expect = 0.069
Identities = 12/65 (18%), Positives = 21/65 (32%), Gaps = 9/65 (13%)
Query: 252 IGDAYMVVSGLPMRNGNL-HAREIARMSLALLDTVVTF--------TIRHRPTDQLKLRI 302
+GDA M + G P R + +L + + ++ R
Sbjct: 76 VGDAIMALYGAPEEMSPSEQVRRAIATARQMLVALEKLNQGWQERGLVGRNEVPPVRFRC 135
Query: 303 GMHTG 307
G+H G
Sbjct: 136 GIHQG 140
>2w01_A Adenylate cyclase; guanylyl cyclase, class III nucleotidyl
cyclase, lyase; 2.31A {Synechocystis SP}
Length = 208
Score = 49.1 bits (118), Expect = 4e-07
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 20 VTIYFSDIVGFTSLSAESTPLQVVELLNDLYT 51
+TI SD+ GFTS S P +VV++LN +
Sbjct: 15 ITILTSDLRGFTSTSEGLNPEEVVKVLNIYFG 46
Score = 46.8 bits (112), Expect = 2e-06
Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 5/66 (7%)
Query: 185 GPCVAGVVG--LKMPRYCLFGDTVNTASRMESNGQALKIHVSPFTKEVLDTFGTFDLELR 242
G V G +G + +Y + G VN R+ES +I +S T E +
Sbjct: 119 GEVVVGNIGSEKRT-KYGVVGAQVNLTYRIESYTTGGQIFISSTTLEAAG--DRVHVNGN 175
Query: 243 GEVEMK 248
V+ K
Sbjct: 176 RTVQPK 181
Score = 38.7 bits (91), Expect = 0.001
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 339 VTIYFSDIVGFTSLSAESTPE 359
+TI SD+ GFTS S PE
Sbjct: 15 ITILTSDLRGFTSTSEGLNPE 35
Score = 38.7 bits (91), Expect = 0.001
Identities = 11/58 (18%), Positives = 23/58 (39%), Gaps = 3/58 (5%)
Query: 252 IGDAYMVVSGLPMRNGNLHAREIARMSLALLDTVVTF--TIRHRPTDQLKLRIGMHTG 307
+GD +V+ G P + A + + + + L++ IG++TG
Sbjct: 63 MGDGILVLFGAPTSQQD-DALRAVACGVEMQLALREVNQQVTGLGLQPLEMGIGINTG 119
Score = 27.5 bits (62), Expect = 5.0
Identities = 6/34 (17%), Positives = 12/34 (35%)
Query: 91 NLLSRMEQYANNLEALVEERTADYLEEKRKCEEL 124
NL R+E Y + + T + ++
Sbjct: 142 NLTYRIESYTTGGQIFISSTTLEAAGDRVHVNGN 175
Score = 27.5 bits (62), Expect = 5.0
Identities = 6/34 (17%), Positives = 12/34 (35%)
Query: 141 NLLSRMEQYANNLEALVEERTADYLEEKRKCEEL 174
NL R+E Y + + T + ++
Sbjct: 142 NLTYRIESYTTGGQIFISSTTLEAAGDRVHVNGN 175
>3r5g_A CYAB; adenylyl cyclase, lyase; 1.50A {Pseudomonas aeruginosa}
Length = 198
Score = 48.7 bits (117), Expect = 4e-07
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 20 VTIYFSDIVGFTSLSAESTPLQVVELLNDLYTCFDSVIENFD 61
+T++FSDI GFT LS E + +LLN+ + +
Sbjct: 10 LTVFFSDIRGFTELSEELEAEALTDLLNNYLNEMSKIALKYG 51
Score = 46.0 bits (110), Expect = 5e-06
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 185 GPCVAGVVG--LKMPRYCLFGDTVNTASRMESNGQALKIHVSPFTKEVLDTFGTFDLELR 242
G C G G +M Y + G VN ASR+ES +A +I +S T ++ +
Sbjct: 117 GYCTVGNFGADTRM-DYTIIGREVNLASRLESASEAGEILISHETYSLIK--DVIMCRDK 173
Query: 243 GEVEMK 248
G++ +K
Sbjct: 174 GQIAVK 179
Score = 38.7 bits (91), Expect = 0.001
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 339 VTIYFSDIVGFTSLSAESTPE 359
+T++FSDI GFT LS E E
Sbjct: 10 LTVFFSDIRGFTELSEELEAE 30
Score = 36.0 bits (84), Expect = 0.010
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Query: 252 IGDAYMVVSGLPMRNGNL-HAREIARMSLALLDTVVTFTIRHR---PTDQLKLRIGMHTG 307
+GD MV G P G A M +A+ + + R T L++R+G++TG
Sbjct: 58 VGDCVMVFFGDPSTQGAKKDAVAAVSMGIAMRKHMKVLRQQWRAQGITKPLEIRMGINTG 117
Score = 27.9 bits (63), Expect = 4.2
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 91 NLLSRMEQYANNLEALVEERTADYLEEKRKCEEL 124
NL SR+E + E L+ T +++ C +
Sbjct: 140 NLASRLESASEAGEILISHETYSLIKDVIMCRDK 173
Score = 27.9 bits (63), Expect = 4.2
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 141 NLLSRMEQYANNLEALVEERTADYLEEKRKCEEL 174
NL SR+E + E L+ T +++ C +
Sbjct: 140 NLASRLESASEAGEILISHETYSLIKDVIMCRDK 173
>1ybt_A Hydrolase, alpha/beta hydrolase fold family; cyclase homology
domain, CHD, RV1900C; 2.31A {Mycobacterium tuberculosis}
PDB: 1ybu_A*
Length = 184
Score = 46.9 bits (112), Expect = 2e-06
Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 4/64 (6%)
Query: 185 GPCVAGVVGLKMPRYCLFGDTVNTASRMESNGQALKIHVSPFTKEVLDTFGTFDLELRGE 244
G + G V+ +R+ + ++ VS ++++ RGE
Sbjct: 105 GEVEVRDAS---HGTDVAGVAVHIGARVCALAGPSEVLVSSTVRDIVAGSR-HRFAERGE 160
Query: 245 VEMK 248
E+K
Sbjct: 161 QELK 164
Score = 46.9 bits (112), Expect = 2e-06
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 20 VTIYFSDIVGFTSLSAESTPLQVVELLNDLYTCFDSVIENFD 61
TI F+DIVG T +A + +LL++ T I+ F
Sbjct: 18 ATIMFTDIVGSTQHAAALGDDRWRDLLDNHDTIVCHEIQRFG 59
Score = 34.9 bits (81), Expect = 0.018
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 339 VTIYFSDIVGFTSLSAESTPE 359
TI F+DIVG T +A +
Sbjct: 18 ATIMFTDIVGSTQHAAALGDD 38
Score = 33.4 bits (77), Expect = 0.057
Identities = 22/111 (19%), Positives = 35/111 (31%), Gaps = 30/111 (27%)
Query: 201 LFGDTVNTASRMESNG----QALKIHVSPFTKEVLDTFGTFDLELRGEVEMKVETIGDAY 256
+F D V + + G + L + + FG G V T GD +
Sbjct: 21 MFTDIVGSTQHAAALGDDRWRDLLDNHDTIVCHEIQRFG-------GRE---VNTAGDGF 70
Query: 257 MVVSGLPMRNGNLHAREIARMSLALLDTVVTFTIRHRPTDQLKLRIGMHTG 307
+ P A + ++D V I +RIG+H G
Sbjct: 71 VATFTSPSA-----A---IACADDIVDAVAALGIE--------VRIGIHAG 105
>3mr7_A Adenylate/guanylate cyclase/hydrolase, alpha/beta family;
alpha-beta fold, structural genomics, PSI-2, protein
structu initiative; 2.60A {Ruegeria pomeroyi}
Length = 189
Score = 44.2 bits (105), Expect = 2e-05
Identities = 6/42 (14%), Positives = 12/42 (28%)
Query: 20 VTIYFSDIVGFTSLSAESTPLQVVELLNDLYTCFDSVIENFD 61
I +D+ G++ L + + D I
Sbjct: 8 CAILAADMAGYSRLMERNETDVLNRQKLYRRELIDPAIAQAG 49
Score = 43.4 bits (103), Expect = 3e-05
Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 7/64 (10%)
Query: 185 GPCVAGVVGLKMPRYCLFGDTVNTASRMESNGQALKIHVSPFTKEVLDTFGTFDLELRGE 244
G V +FGD VN A+R+E+ + I VS ++ + G
Sbjct: 103 GDIVLE-------DGDIFGDAVNVAARLEAISEPGAICVSDIVHQITQDRVSEPFTDLGL 155
Query: 245 VEMK 248
++K
Sbjct: 156 QKVK 159
Score = 38.4 bits (90), Expect = 0.001
Identities = 19/111 (17%), Positives = 37/111 (33%), Gaps = 22/111 (19%)
Query: 201 LFGDTVNTASRMESNG----QALKIHVSPFTKEVLDTFGTFDLELRGEVEMKVETIGDAY 256
L D + ME N K++ + G G++ V+T GD
Sbjct: 11 LAADMAGYSRLMERNETDVLNRQKLYRRELIDPAIAQAG-------GQI---VKTTGDGM 60
Query: 257 MVVSGLPMRNGNLHAREIARMSLALLDTVVTFTIRHRPTDQLKLRIGMHTG 307
+ A+ R +L + + ++++ RIG++ G
Sbjct: 61 LARFD--------TAQAALRCALEIQQAMQQREEDTPRKERIQYRIGINIG 103
Score = 34.6 bits (80), Expect = 0.026
Identities = 4/21 (19%), Positives = 10/21 (47%)
Query: 339 VTIYFSDIVGFTSLSAESTPE 359
I +D+ G++ L + +
Sbjct: 8 CAILAADMAGYSRLMERNETD 28
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 35.9 bits (82), Expect = 0.009
Identities = 14/78 (17%), Positives = 27/78 (34%), Gaps = 21/78 (26%)
Query: 95 RMEQYANNLEALVEERTADYLEEKRKCEELLYQLLPKDYESNNILDNLLSRMEQY----A 150
R EQ ++E A K +E ++ ++ + + EQ
Sbjct: 91 REEQ-----RKRLQELDA---ASKVMEQEW------REKAKKDLEEWNQRQSEQVEKNKI 136
Query: 151 NNL---EALVEERTADYL 165
NN +A ++ AD +
Sbjct: 137 NNRIADKAFYQQPDADII 154
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma,
lipid binding protein; 1.7A {Homo sapiens} SCOP:
a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Length = 165
Score = 32.4 bits (73), Expect = 0.12
Identities = 20/135 (14%), Positives = 49/135 (36%), Gaps = 8/135 (5%)
Query: 32 SLSAESTPLQVVELLNDLYTCFDSVIENFDVYKVIFVVLSE--IYSISLAALDYESNNIL 89
++ E P + ++ + F Y LSE + + + E ++
Sbjct: 5 AVETEPEPELRQQTEWQSGQRWELALGRFWDYLRWVQTLSEQVQEELLSSQVTQELRALM 64
Query: 90 DNLLSRMEQYANNLEALVEERTADYLEEKRKCEELLYQLLPKDYESNNILDNLLSRMEQY 149
D + ++ Y + LE + + K + L D ++++ R+ QY
Sbjct: 65 DETMKELKAYKSELEEQLTPVAEETRARLSKELQAAQARLGAD------MEDVRGRLVQY 118
Query: 150 ANNLEALVEERTADY 164
++A++ + T +
Sbjct: 119 RGEVQAMLGQSTEEL 133
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 30.6 bits (69), Expect = 1.00
Identities = 17/96 (17%), Positives = 36/96 (37%), Gaps = 7/96 (7%)
Query: 92 LLSRMEQYANNLEALVEERTADYLEEKRKCEELLYQLLPKDYESNNILDNLLSRMEQYAN 151
L + + +E EER+ EK+K ++ + L + E L
Sbjct: 925 LEEILHEMEARIEEE-EERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADG 983
Query: 152 NLEAL------VEERTADYLEEKRKCEELLYQLLPN 181
++ + +E++ +E++ EE + L N
Sbjct: 984 KIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTN 1019
Score = 28.6 bits (64), Expect = 3.8
Identities = 14/86 (16%), Positives = 38/86 (44%), Gaps = 11/86 (12%)
Query: 92 LLSRMEQYANNLEALVEERTADYLEEKRKCEELLYQLLPK---DYESNNILDNLLSRMEQ 148
++++ +++ + E++ +E++ EE + L + E L L ++ E
Sbjct: 981 ADGKIKKMEDDILIM-EDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHES 1039
Query: 149 YANNLEALVEERTADYLEEKRKCEEL 174
+ LE +++ E++ +EL
Sbjct: 1040 MISELEVRLKK-------EEKSRQEL 1058
>1nt2_B Conserved hypothetical protein; adeMet, binding motif, RNA binding
protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP:
a.183.1.1
Length = 258
Score = 29.4 bits (65), Expect = 1.5
Identities = 27/164 (16%), Positives = 52/164 (31%), Gaps = 27/164 (16%)
Query: 104 EALVEERTADYLEEKRKCEELLYQLLPKDYESNNILDNLLSRMEQYANNLEALVEERTAD 163
E L + R E K E+ + +L ++ ++ + ME+ A N+ LV + A
Sbjct: 96 EKLEDIRAVKESEITEKFEKKIREL--RELR-RDVEREIEEVMEKIAPNMTELVGAKVAA 152
Query: 164 YLEEKRKCEELLYQLLPNCYQ--GPCVAGVVGLKMPRYCLFGDTVNT------------- 208
L E+ E L +L + Q G + +
Sbjct: 153 KLLERAGSMERLVRLPASKIQVIGAEKSLYKAFARMKKGKKAKIPKHGIIFLHPFIRTLP 212
Query: 209 ------ASRMESNGQALKIHVSPFTKEVLDTFGTFDLELRGEVE 246
+R + A+ + F E+ ++ +R E
Sbjct: 213 KAKRGKMARFLAAKLAIAAKIDYFRGEIDESLY---ESIRRRYE 253
Score = 27.8 bits (61), Expect = 4.8
Identities = 19/89 (21%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
Query: 41 QVVELLNDLYTCFDSVIENF-DVYKVIFVVLSEIYSISLAALDYESNNILDNLLSRMEQY 99
+V+ L ++ + + E D+ V ++E + + L ++ + ME+
Sbjct: 79 ALVKALEEIDESINMLNEKLEDIRAVKESEITEKFEKKIRELRELRRDVEREIEEVMEKI 138
Query: 100 ANNLEALVEERTADYLEEKRKCEELLYQL 128
A N+ LV + A L E+ E L +L
Sbjct: 139 APNMTELVGAKVAAKLLERAGSMERLVRL 167
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 1.8
Identities = 6/31 (19%), Positives = 15/31 (48%), Gaps = 7/31 (22%)
Query: 84 ESNNILDNLLSRMEQYANN------LEALVE 108
E + L + ++ YA++ ++A +E
Sbjct: 18 EKQAL-KKLQASLKLYADDSAPALAIKATME 47
Score = 28.8 bits (63), Expect = 1.8
Identities = 6/31 (19%), Positives = 15/31 (48%), Gaps = 7/31 (22%)
Query: 134 ESNNILDNLLSRMEQYANN------LEALVE 158
E + L + ++ YA++ ++A +E
Sbjct: 18 EKQAL-KKLQASLKLYADDSAPALAIKATME 47
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix,
anti-parrallel beta sheet, double straded anti-parallel
beta helix, metal binding protein; 2.00A {Mus musculus}
Length = 404
Score = 28.8 bits (64), Expect = 2.6
Identities = 12/66 (18%), Positives = 25/66 (37%), Gaps = 5/66 (7%)
Query: 68 VVLSEIYSISLAALDYE-----SNNILDNLLSRMEQYANNLEALVEERTADYLEEKRKCE 122
VV ++ + + LD+E L + + + + LE R A + +
Sbjct: 81 VVKTDSATTRIPELDFEIPAFSQKGALTTVEGLISRAISGLEQDQPTRRAVEGAIAERID 140
Query: 123 ELLYQL 128
E + +L
Sbjct: 141 EFIGKL 146
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD,
enzyme, nucleotide binding,
sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo
sapiens}
Length = 170
Score = 27.5 bits (62), Expect = 4.3
Identities = 10/41 (24%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
Query: 191 VVGLKMPRYCLFGDTVNTASRMESNGQALKIHVSPFTKEVL 231
+VG +P LF D + + M++ G A+++ + + L
Sbjct: 109 MVG--IP---LFADQPDNIAHMKARGAAVRVDFNTMSSTDL 144
>1jqo_A Phosphoenolpyruvate carboxylase; beta barrel, carbon dioxide
fixation, lyase; 3.00A {Zea mays} SCOP: c.1.12.3
Length = 970
Score = 28.3 bits (63), Expect = 5.4
Identities = 19/127 (14%), Positives = 48/127 (37%), Gaps = 17/127 (13%)
Query: 44 ELLNDLYTCFDSVIENFD-------VYKVIFVVLSEIYSISLAALDYESN-----NILDN 91
E L L C+ S+ + D + ++ V + +SL LD +++D
Sbjct: 411 EFLEPLELCYKSLCDCGDKAIADGSLLDLLRQV--FTFGLSLVKLDIRQESERHTDVIDA 468
Query: 92 LLSRMEQYANNLEALVEERTADYLEEKRKCEELLY-QLLPKDYESNNILDNLLSRMEQYA 150
+ + + + E++ ++L + + + L LP+ E +++ E
Sbjct: 469 ITTHL--GIGSYREWPEDKRQEWLLSELRGKRPLLPPDLPQTDEIADVIGAFHVLAELPP 526
Query: 151 NNLEALV 157
++ +
Sbjct: 527 DSFGPYI 533
>1epw_A Bontoxilysin B, botulinum neurotoxin type B; zinc, metalloprotease,
transmembrane, hydrolase; 1.90A {Clostridium botulinum}
SCOP: b.29.1.6 b.42.4.2 d.92.1.7 h.4.2.1 PDB: 1f31_A*
1g9a_A* 1g9b_A* 1g9c_A* 1g9d_A* 1i1e_A* 1s0b_A 1s0c_A
1s0d_A 1s0e_A 1s0f_A 1s0g_A 2np0_A 3zuq_A 2etf_A 2xhl_A
1z0h_A 2nm1_A 3g94_A 1f82_A ...
Length = 1290
Score = 28.3 bits (62), Expect = 5.5
Identities = 11/83 (13%), Positives = 29/83 (34%), Gaps = 8/83 (9%)
Query: 79 AALDYESNNILDNLLSRMEQYANNLEALVEERTADYL--------EEKRKCEELLYQLLP 130
++ Y ++ + ++ + N L+ + + EK K + L ++P
Sbjct: 777 CSVSYLMKKMIPLAVEKLLDFDNTLKKNLLNYIDENKLYLIGSAEYEKSKVNKYLKTIMP 836
Query: 131 KDYESNNILDNLLSRMEQYANNL 153
D L+ +Y + +
Sbjct: 837 FDLSIYTNDTILIEMFNKYNSEI 859
>3piv_A Interferon; zebrafish, cytokine; 2.09A {Danio rerio}
Length = 164
Score = 27.2 bits (60), Expect = 5.7
Identities = 6/44 (13%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Query: 66 IFVVLSEIYSISLAALDYESNNILDNLLSRMEQYANNLEALVEE 109
I ++ ++ D N +++ L+ + + +++L+ V
Sbjct: 62 IIHLMDAREHMNSVNWD---QNTVEDFLNILHRKSSDLKECVAR 102
>2gvi_A Conserved hypothetical protein; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1
g.39.1.18
Length = 204
Score = 27.4 bits (60), Expect = 7.2
Identities = 9/73 (12%), Positives = 18/73 (24%), Gaps = 4/73 (5%)
Query: 216 GQALKIHVSPFTKEVLDTFGTFDLELRGEVEMKVETIG----DAYMVVSGLPMRNGNLHA 271
+ + ++ D EM E + D +G G
Sbjct: 23 YMPMGYRAGSYALKIAGLEKEKDHRTYLLSEMSPEDMNGCFNDGAQAATGCTYGKGLFSL 82
Query: 272 REIARMSLALLDT 284
+++L L
Sbjct: 83 LGYGKLALILYRP 95
>3r3j_A Glutamate dehydrogenase; rossman fold, oxidoreductase, apicoplast;
3.10A {Plasmodium falciparum}
Length = 456
Score = 27.6 bits (62), Expect = 8.5
Identities = 15/75 (20%), Positives = 24/75 (32%), Gaps = 12/75 (16%)
Query: 87 NILDNLLSRMEQYANNLEALVEERTADYLEEKRKCEELLYQLLPKDYESNNILDNLLSRM 146
N ++ L V + + E + EE+L L P + +
Sbjct: 3 NYGYTSTKSVDNQIEELREKVVSKNKNEPEFLQAFEEVLSCLKP-----------VFKKD 51
Query: 147 EQYANNLEALVE-ER 160
Y LE + E ER
Sbjct: 52 NVYIGVLENIAEPER 66
>2xs1_A Programmed cell death 6-interacting protein; protein
transport-viral protein complex, cell cycle; 2.30A {Homo
sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A
2ojq_A
Length = 704
Score = 27.6 bits (60), Expect = 9.1
Identities = 9/96 (9%), Positives = 32/96 (33%), Gaps = 11/96 (11%)
Query: 84 ESNNILDNLLSRMEQYANNLEALVEERTADYLEEKRKCEELLYQLLPKDYESNNILDNLL 143
++ + + + + + L + EL + + ++
Sbjct: 507 KAVQADGQVKECYQSHRDTIVLL-----------CKPEPELNAAIPSANPAKTMQGSEVV 555
Query: 144 SRMEQYANNLEALVEERTADYLEEKRKCEELLYQLL 179
+ ++ +NL+ + +ER + K ++ + L
Sbjct: 556 NVLKSLLSNLDEVKKEREGLENDLKSVNFDMTSKFL 591
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.371
Gapped
Lambda K H
0.267 0.0472 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,527,680
Number of extensions: 337142
Number of successful extensions: 817
Number of sequences better than 10.0: 1
Number of HSP's gapped: 772
Number of HSP's successfully gapped: 104
Length of query: 368
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 273
Effective length of database: 4,049,298
Effective search space: 1105458354
Effective search space used: 1105458354
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.7 bits)