Query         psy7404
Match_columns 196
No_of_seqs    110 out of 133
Neff          6.3 
Searched_HMMs 46136
Date          Fri Aug 16 17:23:57 2013
Command       hhsearch -i /work/01045/syshi/Psyhhblits/psy7404.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7404hhsearch_cdd -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 KOG3705|consensus              100.0 1.4E-74   3E-79  513.1   8.9  196    1-196   168-365 (580)
  2 PF10250 O-FucT:  GDP-fucose pr  91.9    0.15 3.2E-06   44.9   3.1   32   52-84      4-35  (351)
  3 PF05830 NodZ:  Nodulation prot  91.6    0.29 6.3E-06   43.6   4.6   54   47-102     3-60  (321)
  4 PF03254 XG_FTase:  Xyloglucan   78.2     7.2 0.00016   36.8   6.7   42   39-85    107-148 (476)
  5 PF11753 DUF3310:  Protein of u  75.0     2.8 6.1E-05   28.3   2.4   30  158-187    26-56  (60)
  6 COG3657 Uncharacterized protei  61.4     8.5 0.00018   28.7   2.6   39    9-47      6-47  (100)
  7 PF15174 PRNT:  Prion-related p  51.1      11 0.00025   24.3   1.6   23   29-51     25-51  (51)
  8 PLN03220 uncharacterized prote  42.8      23  0.0005   26.8   2.4   20  175-194    64-83  (105)
  9 PLN03219 uncharacterized prote  32.3      42  0.0009   25.6   2.4   20  175-194    66-85  (108)
 10 PRK10404 hypothetical protein;  31.8      61  0.0013   24.1   3.2   36    1-38     16-51  (101)
 11 KOG1946|consensus               28.9      54  0.0012   28.3   2.8   43    6-53    107-150 (240)
 12 KOG3849|consensus               26.8      45 0.00096   29.8   2.0   35   48-84     32-66  (386)
 13 PF08844 DUF1815:  Domain of un  22.3      88  0.0019   23.4   2.5   29    4-34     74-102 (105)
 14 PRK13916 plasmid segregation p  21.5   1E+02  0.0022   22.7   2.6   20  176-195    34-53  (97)
 15 PF02519 Auxin_inducible:  Auxi  21.4      66  0.0014   23.9   1.8   19  175-193    61-79  (100)
 16 PLN03090 auxin-responsive fami  21.3      92   0.002   23.5   2.5   19  175-193    65-83  (104)
 17 PF13614 AAA_31:  AAA domain; P  21.2 2.2E+02  0.0048   21.2   4.8   38   49-86      2-39  (157)
 18 KOG0269|consensus               20.9 1.9E+02  0.0041   29.3   5.1   35  157-191   428-464 (839)

No 1  
>KOG3705|consensus
Probab=100.00  E-value=1.4e-74  Score=513.06  Aligned_cols=196  Identities=62%  Similarity=1.179  Sum_probs=193.0

Q ss_pred             ChHhhHHHHHhccChHHHHHHhhHHHHHHHHHHHHhhcCCCCCCCCCeEEEecCCCccchHHHHHHHHHHHHHHhcCcEE
Q psy7404           1 SLVQDLNTLQASDSFEAWRLKESHDLSDLVQRRLEYLQNPSDCRTAKKLVCTLNKGCGYGCQLHHVVYCFIVAYATQRTL   80 (196)
Q Consensus         1 sl~~d~~~l~~~d~~~~wr~~~~~~Lt~~vQ~~I~~~QNP~dC~~Ak~L~c~~~~~cGfGc~~H~~~~cl~~A~~~~Rtl   80 (196)
                      |||.|++.|.++||+++||.|++..||++|||||+++|||+||++||+|||+++++||||||+||++|||++||+|.|||
T Consensus       168 Slm~d~~~l~q~dG~e~wR~Kea~dlt~lvqrri~~LQNPkdCs~AkkLVCnlnKgCGyGCQLHHVvYCfi~AyaTqRtl  247 (580)
T KOG3705|consen  168 SLMGDSAQLEQLDGSEEWRFKEATDLTQLVQRRIEKLQNPKDCSEAKKLVCNLNKGCGYGCQLHHVVYCFITAYATQRTL  247 (580)
T ss_pred             HHHhHHHHHHhccCcHHHHHhHHhHHHHHHHHHHHHhcChHhhHHHhhheeeccCCcccccceeeeeEeeeeeeecceEE
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCcccCCCcccccccCCCCCCCCCCCCCCCCCCC--CCCceEeeeeecCCCCCCCCCCCCCCcchHHHhhhccCC
Q psy7404          81 ILKSKGWRYARGGWEEVFEPVSKTCTSPEGASTSSWPGH--DETQVIKLPVIDSISPRPAYLPLSIPKDLEPRLSRLHGD  158 (196)
Q Consensus        81 i~~~~~~~y~~~gw~~~F~P~S~~C~~~~~~~~~~w~~~--~~~~vv~~pi~~~~~~~~~~~p~~vP~~l~~~l~~~h~~  158 (196)
                      |+++.+|+|+.+||+.+|+|+|+||.+++..+..+|++.  ++.+||.+||+|++.++|+|+|++||+||++||.++|||
T Consensus       248 iLks~gWrY~~gGWe~VF~pvS~~c~D~~~~nT~~wpg~~~~n~qVv~LpIvDSL~prPpyLPlAVPEdLa~rL~rlHgd  327 (580)
T KOG3705|consen  248 ILKSDGWRYSSGGWESVFKPVSKCCFDEAVGNTEAWPGAEPSNAQVVSLPIVDSLIPRPPYLPLAVPEDLAERLTRLHGD  327 (580)
T ss_pred             EEecCCceecCCChhhhhhhhhhcccccccccccCCCCCCCCCceEEEeecccccCCCCCCccccCcHHHHHHHHHhcCC
Confidence            999999999999999999999999999999999999874  489999999999999999999999999999999999999


Q ss_pred             ChhHHHHHHHHHhhCCChHHHHHHHHHhhhCCCCCCCC
Q psy7404         159 PIVWWIGQILKYLFKPQPKTRDFLSKYGEKINFQKPIV  196 (196)
Q Consensus       159 P~~Ww~gQ~~~YlmRP~~~~~~~l~~~~~~l~f~~PIV  196 (196)
                      |.+||+||+++|||||||+++++|+++.++|+|.+|||
T Consensus       328 P~vwwVgqFikYL~Rpqp~t~~~l~~a~k~lg~~~Piv  365 (580)
T KOG3705|consen  328 PPVWWVGQFIKYLMRPQPATQEKLDKALKSLGLDKPIV  365 (580)
T ss_pred             CceeeHHHHHHHHhCCChhhHHHHHHHHHhCCCCCcee
Confidence            99999999999999999999999999999999999998


No 2  
>PF10250 O-FucT:  GDP-fucose protein O-fucosyltransferase;  InterPro: IPR019378  This is a family of conserved proteins representing the enzyme responsible for adding O-fucose to EGF (epidermal growth factor-like) repeats. Six highly conserved cysteines are present as well as a DXD-like motif (ERD), conserved in mammals, Drosophila, and Caenorhabditis elegans. Both features are characteristic of several glycosyltransferase families. The enzyme is a membrane-bound protein released by proteolysis and, as for most glycosyltransferases, is strongly activated by manganese []. ; PDB: 3ZY6_A 3ZY3_A 3ZY5_A 3ZY2_A 3ZY4_A.
Probab=91.90  E-value=0.15  Score=44.89  Aligned_cols=32  Identities=28%  Similarity=0.314  Sum_probs=24.7

Q ss_pred             ecCCCccchHHHHHHHHHHHHHHhcCcEEEEec
Q psy7404          52 TLNKGCGYGCQLHHVVYCFIVAYATQRTLILKS   84 (196)
Q Consensus        52 ~~~~~cGfGc~~H~~~~cl~~A~~~~Rtli~~~   84 (196)
                      +...| |||=|.-++...+.+|..+|||||+-.
T Consensus         4 ~p~~G-GfnNQr~~~~~a~~~A~~LnRTLVLPp   35 (351)
T PF10250_consen    4 DPCMG-GFNNQRMGFENAVVFAKALNRTLVLPP   35 (351)
T ss_dssp             ---SS-SHHHHHHHHHHHHHHHHHHT-EEE--E
T ss_pred             CCCCC-CHHHHHHHHHHHHHHHHHhCCEEEcCC
Confidence            33457 999999999999999999999999976


No 3  
>PF05830 NodZ:  Nodulation protein Z (NodZ);  InterPro: IPR008716 The nodulation genes of Rhizobia are regulated by the nodD gene product in response to host-produced flavonoids and appear to encode enzymes involved in the production of a lipo-chitose signal molecule required for infection and nodule formation. NodZ is required for the addition of a 2-O-methylfucose residue to the terminal reducing N-acetylglucosamine of the nodulation signal. This substitution is essential for the biological activity of this molecule. Mutations in nodZ result in defective nodulation. nodZ represents a unique nodulation gene that is not under the control of NodD and yet is essential for the synthesis of an active nodulation signal [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3SIX_A 2HLH_A 2HHC_A 3SIW_A 2OCX_A.
Probab=91.59  E-value=0.29  Score=43.63  Aligned_cols=54  Identities=28%  Similarity=0.410  Sum_probs=38.1

Q ss_pred             CeEEEecCCCccchHHHHHHHHHHHHHHhcCcEEEEecCCCccc----CCCcccccccCC
Q psy7404          47 KKLVCTLNKGCGYGCQLHHVVYCFIVAYATQRTLILKSKGWRYA----RGGWEEVFEPVS  102 (196)
Q Consensus        47 k~L~c~~~~~cGfGc~~H~~~~cl~~A~~~~Rtli~~~~~~~y~----~~gw~~~F~P~S  102 (196)
                      ++++|.  ..-|||=-+-.++-|-.+|=.|||+||+|..+.-|.    .+-+.-+|+|.-
T Consensus         3 r~~~~r--~r~g~gd~l~~la~aw~~a~~~~r~l~idw~~s~~~~~~f~n~f~~ffepv~   60 (321)
T PF05830_consen    3 RFVVSR--RRTGLGDCLWSLAAAWRYAKRTGRTLVIDWRGSCYLDQPFTNAFPVFFEPVE   60 (321)
T ss_dssp             -EEEEE----S-HHHHHHHHHHHHHHHHHHT-EEEEE-BT-TT-SSTTSBSHHHHB---S
T ss_pred             ceEEEe--ccCCchhHHHHHHHHHHHHHHhCCeEEEEcCCceecCCcccccCCcccchhh
Confidence            688887  578999999999999999999999999999998886    356777899984


No 4  
>PF03254 XG_FTase:  Xyloglucan fucosyltransferase;  InterPro: IPR004938  Plant cell walls are crucial for development, signal transduction, and disease resistance in plants. Cell walls are made of cellulose, hemicelluloses, and pectins. Xyloglucan (XG), the principal load-bearing hemicellulose of dicotyledonous plants, has a terminal fucosyl residue. This fucosyltransferase adds this residue []. ; GO: 0008107 galactoside 2-alpha-L-fucosyltransferase activity, 0042546 cell wall biogenesis, 0016020 membrane
Probab=78.23  E-value=7.2  Score=36.85  Aligned_cols=42  Identities=26%  Similarity=0.456  Sum_probs=36.5

Q ss_pred             CCCCCCCCCeEEEecCCCccchHHHHHHHHHHHHHHhcCcEEEEecC
Q psy7404          39 NPSDCRTAKKLVCTLNKGCGYGCQLHHVVYCFIVAYATQRTLILKSK   85 (196)
Q Consensus        39 NP~dC~~Ak~L~c~~~~~cGfGc~~H~~~~cl~~A~~~~Rtli~~~~   85 (196)
                      .+.+|   |+||..  ..-|+|=.|=-++-.|..|+-|||||+++..
T Consensus       107 ~~~~C---kYvVw~--~~~GLGNRmLslaSaFLYAlLT~RVLLV~~~  148 (476)
T PF03254_consen  107 GTSEC---KYVVWI--PYSGLGNRMLSLASAFLYALLTNRVLLVDPG  148 (476)
T ss_pred             CCCCC---cEEEEe--cCCchHHHHHHHHHHHHHHHHhCcEEEEecC
Confidence            46677   788885  4689999999999999999999999999873


No 5  
>PF11753 DUF3310:  Protein of unknwon function (DUF3310);  InterPro: IPR021739 This entry is represented by Bacteriophage T7, Gp1.7. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=75.00  E-value=2.8  Score=28.29  Aligned_cols=30  Identities=20%  Similarity=0.303  Sum_probs=21.5

Q ss_pred             CChhHHHHHHHHHhhC-CChHHHHHHHHHhh
Q psy7404         158 DPIVWWIGQILKYLFK-PQPKTRDFLSKYGE  187 (196)
Q Consensus       158 ~P~~Ww~gQ~~~YlmR-P~~~~~~~l~~~~~  187 (196)
                      .-..+..|++++|++| +...-.+.|++++.
T Consensus        26 ~~~~f~~gnaiKY~~R~~~K~~~eDl~KA~~   56 (60)
T PF11753_consen   26 QFLGFCLGNAIKYLWRAGKKNGIEDLKKAKW   56 (60)
T ss_pred             hhhhHHHHHHHHHHHHHcccCcHHHHHHHHH
Confidence            3578999999999999 44445555555543


No 6  
>COG3657 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.37  E-value=8.5  Score=28.73  Aligned_cols=39  Identities=26%  Similarity=0.434  Sum_probs=28.4

Q ss_pred             HHhccChHHHHHHhh-HHHHHHHHHHHHhhc--CCCCCCCCC
Q psy7404           9 LQASDSFEAWRLKES-HDLSDLVQRRLEYLQ--NPSDCRTAK   47 (196)
Q Consensus         9 l~~~d~~~~wr~~~~-~~Lt~~vQ~~I~~~Q--NP~dC~~Ak   47 (196)
                      +...|-+++|+.+.- ......+++||..+|  ||-||+.-.
T Consensus         6 ~~~~d~F~~W~~kLkD~~Aka~I~~Rl~rl~~GN~GD~kpvg   47 (100)
T COG3657           6 LKGTDTFSEWLKKLKDRRAKAKIAARLDRLALGNFGDVKPVG   47 (100)
T ss_pred             ecchHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCCcCccccc
Confidence            455677889987733 234457899999999  899986644


No 7  
>PF15174 PRNT:  Prion-related protein testis-specific
Probab=51.15  E-value=11  Score=24.35  Aligned_cols=23  Identities=43%  Similarity=0.719  Sum_probs=17.2

Q ss_pred             HHHHHHHhhcCCCCCCC----CCeEEE
Q psy7404          29 LVQRRLEYLQNPSDCRT----AKKLVC   51 (196)
Q Consensus        29 ~vQ~~I~~~QNP~dC~~----Ak~L~c   51 (196)
                      -|-..+|++|-|-||..    .|+++|
T Consensus        25 avthSLW~LqiPvDcQACnRkskkiyc   51 (51)
T PF15174_consen   25 AVTHSLWHLQIPVDCQACNRKSKKIYC   51 (51)
T ss_pred             HHHHHHHhhcCCcchhhhccccceecC
Confidence            35678999999999964    355554


No 8  
>PLN03220 uncharacterized protein; Provisional
Probab=42.76  E-value=23  Score=26.81  Aligned_cols=20  Identities=35%  Similarity=0.785  Sum_probs=17.8

Q ss_pred             ChHHHHHHHHHhhhCCCCCC
Q psy7404         175 QPKTRDFLSKYGEKINFQKP  194 (196)
Q Consensus       175 ~~~~~~~l~~~~~~l~f~~P  194 (196)
                      +|.++++|++++++.||.+|
T Consensus        64 hP~F~~LL~~AeEEfGf~~~   83 (105)
T PLN03220         64 HPSFKEFLSRAEEEFGFNHP   83 (105)
T ss_pred             ChHHHHHHHHHHHHhCCCCC
Confidence            46789999999999999985


No 9  
>PLN03219 uncharacterized protein; Provisional
Probab=32.32  E-value=42  Score=25.56  Aligned_cols=20  Identities=30%  Similarity=0.614  Sum_probs=17.4

Q ss_pred             ChHHHHHHHHHhhhCCCCCC
Q psy7404         175 QPKTRDFLSKYGEKINFQKP  194 (196)
Q Consensus       175 ~~~~~~~l~~~~~~l~f~~P  194 (196)
                      .|.++++|+++.++.||.++
T Consensus        66 hP~F~~LL~~AeEEfGf~~~   85 (108)
T PLN03219         66 HPLFREFLNRAEEECGFHHS   85 (108)
T ss_pred             ChHHHHHHHHHHHHhCCCCC
Confidence            46789999999999999874


No 10 
>PRK10404 hypothetical protein; Provisional
Probab=31.85  E-value=61  Score=24.15  Aligned_cols=36  Identities=17%  Similarity=0.166  Sum_probs=25.5

Q ss_pred             ChHhhHHHHHhccChHHHHHHhhHHHHHHHHHHHHhhc
Q psy7404           1 SLVQDLNTLQASDSFEAWRLKESHDLSDLVQRRLEYLQ   38 (196)
Q Consensus         1 sl~~d~~~l~~~d~~~~wr~~~~~~Lt~~vQ~~I~~~Q   38 (196)
                      +|+.|+|.|.+..+...  ..++..|.+.++..|...+
T Consensus        16 ~L~~dle~Ll~~~~~~a--~e~~~~lR~r~~~~L~~ar   51 (101)
T PRK10404         16 LLSETLEEVLRSSGDPA--DQKYVELKARAEKALDDVK   51 (101)
T ss_pred             HHHHHHHHHHHHhhhhh--HHHHHHHHHHHHHHHHHHH
Confidence            47788888887776554  5567777777777776666


No 11 
>KOG1946|consensus
Probab=28.86  E-value=54  Score=28.32  Aligned_cols=43  Identities=14%  Similarity=0.270  Sum_probs=24.8

Q ss_pred             HHHHHhccChHHH-HHHhhHHHHHHHHHHHHhhcCCCCCCCCCeEEEec
Q psy7404           6 LNTLQASDSFEAW-RLKESHDLSDLVQRRLEYLQNPSDCRTAKKLVCTL   53 (196)
Q Consensus         6 ~~~l~~~d~~~~w-r~~~~~~Lt~~vQ~~I~~~QNP~dC~~Ak~L~c~~   53 (196)
                      ...|++++|.+.- |......+-+.|.+  +.+|||+|   .++++||=
T Consensus       107 s~~L~~~~G~~~lsR~~vvk~iw~YIke--~nLqDP~n---kr~IlCDe  150 (240)
T KOG1946|consen  107 SPSLARFVGTSELSRTDVVKKIWAYIKE--HNLQDPKN---KREILCDE  150 (240)
T ss_pred             CHHHHhhcccccccHHHHHHHHHHHHHH--hccCCccc---cCeeeeHH
Confidence            3456677764441 22222333333222  56899998   78999995


No 12 
>KOG3849|consensus
Probab=26.83  E-value=45  Score=29.84  Aligned_cols=35  Identities=31%  Similarity=0.398  Sum_probs=28.8

Q ss_pred             eEEEecCCCccchHHHHHHHHHHHHHHhcCcEEEEec
Q psy7404          48 KLVCTLNKGCGYGCQLHHVVYCFIVAYATQRTLILKS   84 (196)
Q Consensus        48 ~L~c~~~~~cGfGc~~H~~~~cl~~A~~~~Rtli~~~   84 (196)
                      .++|.-  .--||-|.-|....|+.|=..|||||+..
T Consensus        32 l~yCPC--MGRFGNQaDhFLGsLAFAKaLnRTL~lPp   66 (386)
T KOG3849|consen   32 LLYCPC--MGRFGNQADHFLGSLAFAKALNRTLVLPP   66 (386)
T ss_pred             EEEccc--cccccchHHHHHHHHHHHHHhcccccCCc
Confidence            345543  33699999999999999999999999864


No 13 
>PF08844 DUF1815:  Domain of unknown function (DUF1815);  InterPro: IPR014943 This entry is about 100 amino acids in length and is functionally uncharacterised. 
Probab=22.29  E-value=88  Score=23.41  Aligned_cols=29  Identities=21%  Similarity=0.401  Sum_probs=23.3

Q ss_pred             hhHHHHHhccChHHHHHHhhHHHHHHHHHHH
Q psy7404           4 QDLNTLQASDSFEAWRLKESHDLSDLVQRRL   34 (196)
Q Consensus         4 ~d~~~l~~~d~~~~wr~~~~~~Lt~~vQ~~I   34 (196)
                      .|=..|-++.|+|.  ..++.+|++.+|..+
T Consensus        74 rd~rEL~KLEGAEA--I~qLq~la~~ik~~~  102 (105)
T PF08844_consen   74 RDDRELMKLEGAEA--IQQLQELANLIKQQQ  102 (105)
T ss_pred             cCchHHHhhccHHH--HHHHHHHHHHHHhhh
Confidence            34567889999999  778899999988754


No 14 
>PRK13916 plasmid segregation protein ParR; Provisional
Probab=21.50  E-value=1e+02  Score=22.65  Aligned_cols=20  Identities=35%  Similarity=0.537  Sum_probs=17.3

Q ss_pred             hHHHHHHHHHhhhCCCCCCC
Q psy7404         176 PKTRDFLSKYGEKINFQKPI  195 (196)
Q Consensus       176 ~~~~~~l~~~~~~l~f~~PI  195 (196)
                      ..+.+.|++...++||+.||
T Consensus        34 ~~iR~~L~rYI~~~G~~~Pi   53 (97)
T PRK13916         34 AHIREALRRYIEEIGENPPI   53 (97)
T ss_pred             HHHHHHHHHHHHhcCCCCCC
Confidence            44788889999999999998


No 15 
>PF02519 Auxin_inducible:  Auxin responsive protein;  InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []. Proteins from this ARG7 auxin responsive genes family have no identified functional role [].
Probab=21.40  E-value=66  Score=23.85  Aligned_cols=19  Identities=21%  Similarity=0.510  Sum_probs=16.6

Q ss_pred             ChHHHHHHHHHhhhCCCCC
Q psy7404         175 QPKTRDFLSKYGEKINFQK  193 (196)
Q Consensus       175 ~~~~~~~l~~~~~~l~f~~  193 (196)
                      .|-++++|++++++.||.+
T Consensus        61 hp~f~~LL~~aeeEfG~~~   79 (100)
T PF02519_consen   61 HPLFQELLEQAEEEFGFDQ   79 (100)
T ss_pred             chhHHHHHHHHhhhcCcCC
Confidence            3568999999999999997


No 16 
>PLN03090 auxin-responsive family protein; Provisional
Probab=21.33  E-value=92  Score=23.52  Aligned_cols=19  Identities=21%  Similarity=0.513  Sum_probs=17.1

Q ss_pred             ChHHHHHHHHHhhhCCCCC
Q psy7404         175 QPKTRDFLSKYGEKINFQK  193 (196)
Q Consensus       175 ~~~~~~~l~~~~~~l~f~~  193 (196)
                      .|.++++|+++.++.||.+
T Consensus        65 hP~F~~LL~~aeeEfGf~~   83 (104)
T PLN03090         65 HPEFQSLLQQAEEEFGFDH   83 (104)
T ss_pred             CHHHHHHHHHHHHHhCCCC
Confidence            4679999999999999987


No 17 
>PF13614 AAA_31:  AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=21.16  E-value=2.2e+02  Score=21.24  Aligned_cols=38  Identities=11%  Similarity=0.107  Sum_probs=26.3

Q ss_pred             EEEecCCCccchHHHHHHHHHHHHHHhcCcEEEEecCC
Q psy7404          49 LVCTLNKGCGYGCQLHHVVYCFIVAYATQRTLILKSKG   86 (196)
Q Consensus        49 L~c~~~~~cGfGc~~H~~~~cl~~A~~~~Rtli~~~~~   86 (196)
                      +++-+....|.|...--+..+..+|-...||+++|.+.
T Consensus         2 ~i~v~s~~~g~G~t~~a~~lA~~la~~~~~Vllid~~~   39 (157)
T PF13614_consen    2 VIAVWSPKGGVGKTTLALNLAAALARKGKKVLLIDFDF   39 (157)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHHHTTT-EEEEE--S
T ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHhcCCCeEEEECCC
Confidence            44444446788888887888888888888899999864


No 18 
>KOG0269|consensus
Probab=20.93  E-value=1.9e+02  Score=29.28  Aligned_cols=35  Identities=14%  Similarity=0.070  Sum_probs=30.0

Q ss_pred             CCChhHHHHHHHHHhh--CCChHHHHHHHHHhhhCCC
Q psy7404         157 GDPIVWWIGQILKYLF--KPQPKTRDFLSKYGEKINF  191 (196)
Q Consensus       157 ~~P~~Ww~gQ~~~Ylm--RP~~~~~~~l~~~~~~l~f  191 (196)
                      ..+..||.+-+-+|.+  ||..++|+...+..+++|-
T Consensus       428 ~~~~~sF~~~A~~y~i~G~~iselCe~NA~var~~G~  464 (839)
T KOG0269|consen  428 ASGASSFNSSAESYTISGVPISELCEENAKVARKIGT  464 (839)
T ss_pred             ccChHHHHHHHHHHhhcCccHHHHhhhhhhhhhhhhh
Confidence            4689999999999986  5999999999888777763


Done!