Query psy7404
Match_columns 196
No_of_seqs 110 out of 133
Neff 6.3
Searched_HMMs 29240
Date Fri Aug 16 17:24:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7404.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7404hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2de0_X Alpha-(1,6)-fucosyltran 100.0 7.6E-54 2.6E-58 398.0 19.7 196 1-196 100-298 (526)
2 2hhc_A NODZ, nodulation fucosy 99.1 7E-11 2.4E-15 102.5 5.7 146 43-196 1-172 (330)
3 4ap5_A GDP-fucose protein O-fu 82.2 1.3 4.5E-05 38.9 4.5 42 44-85 20-65 (408)
4 1ete_A FLT3 ligand; four-helix 58.0 16 0.00056 27.2 4.8 41 6-54 57-102 (134)
5 3zy2_A Putative GDP-fucose pro 51.8 9.3 0.00032 33.6 3.1 35 48-84 11-45 (362)
6 3dct_B Nuclear receptor coacti 24.2 29 0.00098 17.8 0.9 10 165-174 6-15 (21)
7 2o6n_A RH4B designed peptide; 20.2 31 0.001 19.6 0.6 24 167-190 10-34 (35)
8 1v32_A AT5G08430, hypothetical 19.7 47 0.0016 23.7 1.7 28 21-53 39-66 (101)
9 3k9g_A PF-32 protein; ssgcid, 17.9 1.6E+02 0.0054 23.0 4.8 38 48-86 28-65 (267)
10 1m45_B IQ2, IQ2 motif from MYO 17.5 57 0.0019 17.3 1.3 8 164-171 2-9 (26)
No 1
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Probab=100.00 E-value=7.6e-54 Score=397.95 Aligned_cols=196 Identities=58% Similarity=1.162 Sum_probs=188.2
Q ss_pred ChHhhHHHHHhccChHHHHHHhhHHHHHHHHHHHHhhcCCCCCCCCCeEEEecCCCccchHHHHHHHHHHHHHHhcCcEE
Q psy7404 1 SLVQDLNTLQASDSFEAWRLKESHDLSDLVQRRLEYLQNPSDCRTAKKLVCTLNKGCGYGCQLHHVVYCFIVAYATQRTL 80 (196)
Q Consensus 1 sl~~d~~~l~~~d~~~~wr~~~~~~Lt~~vQ~~I~~~QNP~dC~~Ak~L~c~~~~~cGfGc~~H~~~~cl~~A~~~~Rtl 80 (196)
||++|++.|+++||+++||.+++++||++||++|+.+|||+||++||+|+|+++.+|||||+||++++||.+|+++||||
T Consensus 100 ~l~~~~~~l~~~~g~~~~r~~~~~~lt~~vq~~i~~~QnP~~Cs~aK~Lv~~~~~~~GfGs~lh~l~~~L~~A~~~~Rtl 179 (526)
T 2de0_X 100 SIMTDLYYLSQTDGAGDWREKEAKDLTELVQRRITYLQNPKDCSKAKKLVCNINKGCGYGCQLHHVVYCFMIAYGTQRTL 179 (526)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHCCSCGGGSCEEEEECCCSSCHHHHHHHHHHHHHHHHHHTCEE
T ss_pred HHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCEEEEEecCCCchHHHHHHHHHHHHHHHhhCCEE
Confidence 59999999999999999999999999999999999999999999999999999889999999999999999999999999
Q ss_pred EEecCCCcccCCCcccccccCCCCCCCCCCCCCCCCCCC---CCCceEeeeeecCCCCCCCCCCCCCCcchHHHhhhccC
Q psy7404 81 ILKSKGWRYARGGWEEVFEPVSKTCTSPEGASTSSWPGH---DETQVIKLPVIDSISPRPAYLPLSIPKDLEPRLSRLHG 157 (196)
Q Consensus 81 i~~~~~~~y~~~gw~~~F~P~S~~C~~~~~~~~~~w~~~---~~~~vv~~pi~~~~~~~~~~~p~~vP~~l~~~l~~~h~ 157 (196)
|+|..+|.|+.++|+|+|+|+|++|..+.......|++. .+.++|+.|+++.+++.++|+|+++|+++.++|..+|+
T Consensus 180 iidd~~w~Y~~g~w~~yF~P~s~~C~~~~~~~~~~w~~~~~~~~~~vV~~~~i~~~~~~~~~~~~~~P~~~~~~L~~l~~ 259 (526)
T 2de0_X 180 ILESQNWRYATGGWETVFRPVSETCTDRSGISTGHWSGEVKDKNVQVVELPIVDSLHPRPPYLPLAVPEDLADRLVRVHG 259 (526)
T ss_dssp EEECTTCSSCTTCGGGTBCCSCSSCCCCCCSCCCBCCCTTGGGGCSEEEECCGGGCSSCCSCCTTCEEGGGHHHHHHHCS
T ss_pred EEECCCCCcCCCCHHHhhhCcCccccCCCccccCCCCCcccCCCcceEEeeccccccccccccccccchhHHHHHHhccC
Confidence 999999999889999999999999999876678899875 37889999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHhhCCChHHHHHHHHHhhhCCCCCCCC
Q psy7404 158 DPIVWWIGQILKYLFKPQPKTRDFLSKYGEKINFQKPIV 196 (196)
Q Consensus 158 ~P~~Ww~gQ~~~YlmRP~~~~~~~l~~~~~~l~f~~PIV 196 (196)
+|++||+||+++|||||+++++++|++.+++++|..|||
T Consensus 260 dp~~w~~~q~~~yl~rP~~~i~~~I~~~~~~l~~~~piV 298 (526)
T 2de0_X 260 DPAVWWVSQFVKYLIRPQPWLEKEIEEATKKLGFKHPVI 298 (526)
T ss_dssp CHHHHHHHHHHHHHTCBCHHHHHHHHHHHHHHTCCSSEE
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCEE
Confidence 999999999999999999999999999999999999986
No 2
>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A*
Probab=99.09 E-value=7e-11 Score=102.49 Aligned_cols=146 Identities=18% Similarity=0.244 Sum_probs=82.9
Q ss_pred CCCCCeEEEecCCCccchHHHHHHHHHHHHHHhcCcEEEEecCCCcccCCCcc----cccccCCCCCCCCCCCCCCCCCC
Q psy7404 43 CRTAKKLVCTLNKGCGYGCQLHHVVYCFIVAYATQRTLILKSKGWRYARGGWE----EVFEPVSKTCTSPEGASTSSWPG 118 (196)
Q Consensus 43 C~~Ak~L~c~~~~~cGfGc~~H~~~~cl~~A~~~~Rtli~~~~~~~y~~~gw~----~~F~P~S~~C~~~~~~~~~~w~~ 118 (196)
|+++|++++.. .+|+|++|++++.|+.+|+.+||+|+++..++.|....+. -+|.|+++.|.+....+...
T Consensus 1 ~~~~r~iv~~~--~gGLGNqm~~~a~a~~~A~~t~r~l~vd~~~~~y~~~~~~~~fp~~F~~v~~~~~~~~~~~~~~--- 75 (330)
T 2hhc_A 1 MTKERFVISRR--RTGFGDCLWSLASAWSYAQRTGRTLVIDWRGSCYVEQPFSNAFPAFFEPVEDIAGVPVICDDRV--- 75 (330)
T ss_dssp -CCCCEEEEEC--CSCHHHHHHHHHHHHHHHHHHTCEEEEECBTCTTCSSTTSBSHHHHBCCCSEETTEEEECSGGG---
T ss_pred CCCCCEEEEeC--CCcHHHHHHHHHHHHHHHHHhCCEEEEECCCcccCCCCccccCcccccchhhhcccceeccccc---
Confidence 78899999984 7899999999999999999999999999887777543333 34555554333221100000
Q ss_pred CCCCceEeeeeecCCCCCCCCCCCCCCcc-hH------HHhhh--ccCC-Ch-------hH-----HHHHHHHHhhCCCh
Q psy7404 119 HDETQVIKLPVIDSISPRPAYLPLSIPKD-LE------PRLSR--LHGD-PI-------VW-----WIGQILKYLFKPQP 176 (196)
Q Consensus 119 ~~~~~vv~~pi~~~~~~~~~~~p~~vP~~-l~------~~l~~--~h~~-P~-------~W-----w~gQ~~~YlmRP~~ 176 (196)
+...+..|+...+..+..+....-|++ +. ..+.. .+.+ +. .| -..++.+|| ||++
T Consensus 76 --~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~w~~~~~~~~~i~~yl-~p~~ 152 (330)
T 2hhc_A 76 --NQLSFPGPFFPRWWNRPSIDCINRPDEQIFRERDELTELFQAREDSEANTIVCDACLMWRCSEEAERLIFRNI-KLRS 152 (330)
T ss_dssp --GTCCCCSSEESGGGGSCGGGGSCCCHHHHHHHHHHHHHHHHSSSCCSCSEEEECSCCTTSSCHHHHHHHHHHS-CBCH
T ss_pred --ccccCCCCcCchhhhccccccccChHHhhhhhhhhhhhhhhhhhccCCCeEEcccccccchhhhhHHHHHhcC-CccH
Confidence 001111222221111111100011111 11 11111 1221 22 23 277899999 9999
Q ss_pred HHHHHHHHHhhhCCCCCCCC
Q psy7404 177 KTRDFLSKYGEKINFQKPIV 196 (196)
Q Consensus 177 ~~~~~l~~~~~~l~f~~PIV 196 (196)
++.+.+++..+++....|+|
T Consensus 153 ~i~~~i~~~~~~~~~~~~~V 172 (330)
T 2hhc_A 153 EIRARIDALYEEHFSGHSII 172 (330)
T ss_dssp HHHHHHHHHHHHHTTTSEEE
T ss_pred HHHHHHHHHHHHhccCCceE
Confidence 99999999887754445654
No 3
>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A*
Probab=82.18 E-value=1.3 Score=38.86 Aligned_cols=42 Identities=14% Similarity=0.140 Sum_probs=36.7
Q ss_pred CCCCeEEEecCCCccchHHHHHHHHHHHHHHhcCcE----EEEecC
Q psy7404 44 RTAKKLVCTLNKGCGYGCQLHHVVYCFIVAYATQRT----LILKSK 85 (196)
Q Consensus 44 ~~Ak~L~c~~~~~cGfGc~~H~~~~cl~~A~~~~Rt----li~~~~ 85 (196)
++.|+|+-+++.|=||+.|--++...+.+|...||| |||-+-
T Consensus 20 ~~~rYl~y~~~~g~Gfn~qrd~f~~~a~~a~~Lnrt~~~~LVLPPw 65 (408)
T 4ap5_A 20 SRRRYLLYDVNPPEGFNLRRDVYIRIASLLKTLLKTEEWVLVLPPW 65 (408)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHTTSCEEEEECCB
T ss_pred cccceEEecCCCCCcccHHHHHHHHHHHHHHHHhCcCCcEEEeCCC
Confidence 345899999987889999999999999999999999 999763
No 4
>1ete_A FLT3 ligand; four-helix bundle, cytokine; 2.20A {Homo sapiens} SCOP: a.26.1.2 PDB: 3qs7_A* 3qs9_A
Probab=58.00 E-value=16 Score=27.19 Aligned_cols=41 Identities=15% Similarity=0.415 Sum_probs=33.0
Q ss_pred HHHHHhccChHHHHHHhhHHHHHHHHHHHHh-----hcCCCCCCCCCeEEEecC
Q psy7404 6 LNTLQASDSFEAWRLKESHDLSDLVQRRLEY-----LQNPSDCRTAKKLVCTLN 54 (196)
Q Consensus 6 ~~~l~~~d~~~~wr~~~~~~Lt~~vQ~~I~~-----~QNP~dC~~Ak~L~c~~~ 54 (196)
|+.|..+.| +++.+|-+.|+..|+. .|+|+.| ++|+-.++.
T Consensus 57 m~rLk~vaG------s~m~~Lle~VntEI~FVt~C~fq~~p~C--lrF~q~NiS 102 (134)
T 1ete_A 57 MERLKTVAG------SKMQGLLERVNTEIHFVTKCAFQPPPSC--LRFVQTNIS 102 (134)
T ss_dssp HHHHHTTBC------HHHHHHHHHHHHHHGGGGGSCCCCCCTT--CCEEEEEHH
T ss_pred HHHHHHhhh------HHHHHHHHHhccceehhhhhhcCCCHHH--HHHHHHhHH
Confidence 455555554 3688999999999996 7999999 999999974
No 5
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=51.84 E-value=9.3 Score=33.64 Aligned_cols=35 Identities=26% Similarity=0.377 Sum_probs=28.8
Q ss_pred eEEEecCCCccchHHHHHHHHHHHHHHhcCcEEEEec
Q psy7404 48 KLVCTLNKGCGYGCQLHHVVYCFIVAYATQRTLILKS 84 (196)
Q Consensus 48 ~L~c~~~~~cGfGc~~H~~~~cl~~A~~~~Rtli~~~ 84 (196)
.|+|-= .=-||=|+-|....|..|=+.|||||+-+
T Consensus 11 i~yCPC--MGRFGNQadhfLG~LafAk~lnRTLvlPp 45 (362)
T 3zy2_A 11 IVFCPC--MGRFGNQVDQFLGVLAFAKALDRTLVLPN 45 (362)
T ss_dssp EEECCC--SSSHHHHHHHHHHHHHHHHHHTCEEECCC
T ss_pred EEeCCC--cCccccHHHHHHHHHHHHHhhCceEecCc
Confidence 455542 23699999999999999999999999954
No 6
>3dct_B Nuclear receptor coactivator 1; FXR, GW4064, alpha-helical sandwich, alternative splicing, DNA-binding, metal-binding nucleus, repressor; HET: 064; 2.50A {Homo sapiens} PDB: 3dcu_B* 3hc5_B* 3hc6_B* 3rvf_B*
Probab=24.17 E-value=29 Score=17.80 Aligned_cols=10 Identities=40% Similarity=0.816 Sum_probs=7.4
Q ss_pred HHHHHHhhCC
Q psy7404 165 GQILKYLFKP 174 (196)
Q Consensus 165 gQ~~~YlmRP 174 (196)
-|++|||+--
T Consensus 6 hqllrylldk 15 (21)
T 3dct_B 6 HQLLRYLLDK 15 (26)
T ss_pred HHHHHHHHcc
Confidence 3889998753
No 7
>2o6n_A RH4B designed peptide; right-handed, tetramer, de novo protein; HET: CGU; 1.10A {Synthetic} SCOP: k.17.1.1 PDB: 1tgg_A*
Probab=20.25 E-value=31 Score=19.57 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=17.9
Q ss_pred HHHHhhC-CChHHHHHHHHHhhhCC
Q psy7404 167 ILKYLFK-PQPKTRDFLSKYGEKIN 190 (196)
Q Consensus 167 ~~~YlmR-P~~~~~~~l~~~~~~l~ 190 (196)
-+.||++ -..++.++|.+++.++.
T Consensus 10 eiaylikkakeeileeikkakqeia 34 (35)
T 2o6n_A 10 EIAYLIKKAKEEILEEIKKAKQEIA 34 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3678887 56668888888887763
No 8
>1v32_A AT5G08430, hypothetical protein RAFL09-47-K03; SWI/SNF complex subunit, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=19.66 E-value=47 Score=23.72 Aligned_cols=28 Identities=32% Similarity=0.520 Sum_probs=18.2
Q ss_pred HhhHHHHHHHHHHHHhhcCCCCCCCCCeEEEec
Q psy7404 21 KESHDLSDLVQRRLEYLQNPSDCRTAKKLVCTL 53 (196)
Q Consensus 21 ~~~~~Lt~~vQ~~I~~~QNP~dC~~Ak~L~c~~ 53 (196)
.....|-+.|. -+.+|||.| .+++.||-
T Consensus 39 eVvk~lW~YIK--~nnLQdp~~---Kr~I~cD~ 66 (101)
T 1v32_A 39 DVSDTIAKYIS--KEGLLDPSN---KKKVVCDK 66 (101)
T ss_dssp HHHHHHHHHHH--HHTCBCSSC---TTEEECCS
T ss_pred HHHHHHHHHHH--hhcCcCccc---CCeeeccH
Confidence 33444444432 358999988 67899995
No 9
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=17.95 E-value=1.6e+02 Score=23.02 Aligned_cols=38 Identities=11% Similarity=0.278 Sum_probs=26.3
Q ss_pred eEEEecCCCccchHHHHHHHHHHHHHHhcCcEEEEecCC
Q psy7404 48 KLVCTLNKGCGYGCQLHHVVYCFIVAYATQRTLILKSKG 86 (196)
Q Consensus 48 ~L~c~~~~~cGfGc~~H~~~~cl~~A~~~~Rtli~~~~~ 86 (196)
+.++-.+..-|.|-+.--+.....+| .-.||+++|.+.
T Consensus 28 ~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD~D~ 65 (267)
T 3k9g_A 28 KIITIASIKGGVGKSTSAIILATLLS-KNNKVLLIDMDT 65 (267)
T ss_dssp EEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEEECT
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEECCC
Confidence 44544445678887776666666666 668999998754
No 10
>1m45_B IQ2, IQ2 motif from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle protein; 1.65A {Saccharomyces cerevisiae}
Probab=17.49 E-value=57 Score=17.29 Aligned_cols=8 Identities=63% Similarity=1.003 Sum_probs=6.6
Q ss_pred HHHHHHHh
Q psy7404 164 IGQILKYL 171 (196)
Q Consensus 164 ~gQ~~~Yl 171 (196)
++|+++||
T Consensus 2 isqaikyl 9 (26)
T 1m45_B 2 ISQAIKYL 9 (26)
T ss_dssp HHHHHHHH
T ss_pred HhHHHHHH
Confidence 57889987
Done!