Query psy7404
Match_columns 196
No_of_seqs 110 out of 133
Neff 6.3
Searched_HMMs 13730
Date Fri Aug 16 17:24:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7404.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/7404hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ixta_ g.3.6.1 (A:) Conotoxin 41.8 5.8 0.00042 20.1 1.4 19 37-58 6-24 (27)
2 d1v32a_ a.42.1.1 (A:) Hypothet 33.3 16 0.0012 24.5 3.2 25 26-53 40-66 (101)
3 d1ve3a1 c.66.1.43 (A:2-227) Hy 18.5 57 0.0042 22.6 4.1 36 20-67 21-56 (226)
4 d1mb6a_ g.3.6.2 (A:) Huwentoxi 16.2 32 0.0023 18.3 1.5 15 39-53 10-26 (35)
5 d1v31a_ a.42.1.1 (A:) Hypothet 15.0 58 0.0042 20.9 3.0 30 19-53 29-58 (93)
6 d1uhra_ a.42.1.1 (A:) SWI/SNF 13.6 59 0.0043 21.0 2.7 30 19-53 29-58 (93)
7 d1i27a_ a.4.5.30 (A:) C-termin 13.2 28 0.002 22.0 0.8 21 167-187 15-35 (73)
8 d1pjza_ c.66.1.36 (A:) Thiopur 12.5 59 0.0043 21.8 2.6 34 27-67 6-39 (201)
9 d2zjre1 d.141.1.1 (E:83-172) R 11.6 33 0.0024 22.4 0.8 9 187-195 23-31 (90)
10 d2qamg2 d.141.1.1 (G:82-176) R 10.3 37 0.0027 22.3 0.7 8 188-195 24-31 (95)
No 1
>d1ixta_ g.3.6.1 (A:) Conotoxin {Conus gloriamaris, Tx IXa [TaxId: 37336]}
Probab=41.81 E-value=5.8 Score=20.08 Aligned_cols=19 Identities=53% Similarity=1.183 Sum_probs=14.8
Q ss_pred hcCCCCCCCCCeEEEecCCCcc
Q psy7404 37 LQNPSDCRTAKKLVCTLNKGCG 58 (196)
Q Consensus 37 ~QNP~dC~~Ak~L~c~~~~~cG 58 (196)
-|.-+|| |.-.+|.+ ++||
T Consensus 6 cqshsdc--ashcictf-rgcg 24 (27)
T d1ixta_ 6 CQSHSDC--ASHCICTF-RGCG 24 (27)
T ss_dssp CSSSSCS--SSSEEEET-TEEE
T ss_pred ccchhhh--hhceeEee-eccc
Confidence 3666788 67799998 6888
No 2
>d1v32a_ a.42.1.1 (A:) Hypothetical protein AT5G08430 (rafl09-47-k03) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=33.33 E-value=16 Score=24.48 Aligned_cols=25 Identities=40% Similarity=0.678 Sum_probs=16.9
Q ss_pred HHHHHHHHH--HhhcCCCCCCCCCeEEEec
Q psy7404 26 LSDLVQRRL--EYLQNPSDCRTAKKLVCTL 53 (196)
Q Consensus 26 Lt~~vQ~~I--~~~QNP~dC~~Ak~L~c~~ 53 (196)
.++.|=+.| +.+|||.| .++++||-
T Consensus 40 Vtk~iw~YIK~nnLqdp~n---kr~I~~D~ 66 (101)
T d1v32a_ 40 VSDTIAKYISKEGLLDPSN---KKKVVCDK 66 (101)
T ss_dssp HHHHHHHHHHHHTCBCSSC---TTEEECCS
T ss_pred HHHHHHHHHHHhcCCCCcc---CCEEccCH
Confidence 333444444 35999998 78999994
No 3
>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=18.52 E-value=57 Score=22.59 Aligned_cols=36 Identities=19% Similarity=0.243 Sum_probs=21.7
Q ss_pred HHhhHHHHHHHHHHHHhhcCCCCCCCCCeEEEecCCCccchHHHHHHH
Q psy7404 20 LKESHDLSDLVQRRLEYLQNPSDCRTAKKLVCTLNKGCGYGCQLHHVV 67 (196)
Q Consensus 20 ~~~~~~Lt~~vQ~~I~~~QNP~dC~~Ak~L~c~~~~~cGfGc~~H~~~ 67 (196)
..++..+...+++.| |++ --+.|+ +||-|....+++
T Consensus 21 ~~~~~~~~~~~~~~l-----~~~-----~~ILDi--GcG~G~~~~~la 56 (226)
T d1ve3a1 21 RSRIETLEPLLMKYM-----KKR-----GKVLDL--ACGVGGFSFLLE 56 (226)
T ss_dssp HHHHHHHHHHHHHSC-----CSC-----CEEEEE--TCTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHhc-----CCC-----CEEEEE--CCCcchhhhhHh
Confidence 445555666555544 322 234587 999999776554
No 4
>d1mb6a_ g.3.6.2 (A:) Huwentoxin-IV {Chinese bird spider (Selenocosmia huwena) [TaxId: 29017]}
Probab=16.18 E-value=32 Score=18.35 Aligned_cols=15 Identities=53% Similarity=1.061 Sum_probs=10.8
Q ss_pred CCCC--CCCCCeEEEec
Q psy7404 39 NPSD--CRTAKKLVCTL 53 (196)
Q Consensus 39 NP~d--C~~Ak~L~c~~ 53 (196)
||+| |-+..+|||.-
T Consensus 10 npsndqcck~s~lvcsr 26 (35)
T d1mb6a_ 10 NPSNDQCCKSSKLVCSR 26 (35)
T ss_dssp CSSSCCBCTTTTEEEET
T ss_pred CCCccccccccceeEec
Confidence 6665 55667899985
No 5
>d1v31a_ a.42.1.1 (A:) Hypothetical protein AT5G14170 (rafl11-05-p19) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=14.97 E-value=58 Score=20.93 Aligned_cols=30 Identities=27% Similarity=0.367 Sum_probs=21.2
Q ss_pred HHHhhHHHHHHHHHHHHhhcCCCCCCCCCeEEEec
Q psy7404 19 RLKESHDLSDLVQRRLEYLQNPSDCRTAKKLVCTL 53 (196)
Q Consensus 19 r~~~~~~Lt~~vQ~~I~~~QNP~dC~~Ak~L~c~~ 53 (196)
|......|.+.|.. +.+|||.| .+++.||-
T Consensus 29 R~~v~k~iw~YIk~--n~Lqd~~n---kr~I~~D~ 58 (93)
T d1v31a_ 29 RPRIIAAIWHYVKA--RKLQNPND---PSFFNCDA 58 (93)
T ss_dssp SHHHHHHHHHHHHH--TTCBCSSC---SSEEECCS
T ss_pred HHHHHHHHHHHHHH--hCCCCCCC---CCEEecCH
Confidence 45556666666643 58899987 78899984
No 6
>d1uhra_ a.42.1.1 (A:) SWI/SNF related regulator of chromatin (BRG1-associated factor 60a) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=13.56 E-value=59 Score=20.99 Aligned_cols=30 Identities=20% Similarity=0.342 Sum_probs=21.3
Q ss_pred HHHhhHHHHHHHHHHHHhhcCCCCCCCCCeEEEec
Q psy7404 19 RLKESHDLSDLVQRRLEYLQNPSDCRTAKKLVCTL 53 (196)
Q Consensus 19 r~~~~~~Lt~~vQ~~I~~~QNP~dC~~Ak~L~c~~ 53 (196)
|......|-+.|.. +.+|||.| .+++.||-
T Consensus 29 R~~v~k~iw~YIk~--n~Lqdp~n---kr~I~cD~ 58 (93)
T d1uhra_ 29 RPVIIQALWQYIKT--HKLQDPHE---REFVLCDK 58 (93)
T ss_dssp HHHHHHHHHHHHHH--TTCBCSSC---SSEECCCT
T ss_pred HHHHHHHHHHHHHH--hcCCCCCC---CCEEecCH
Confidence 45556666666643 58899987 78899984
No 7
>d1i27a_ a.4.5.30 (A:) C-terminal domain of the rap74 subunit of TFIIF {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.15 E-value=28 Score=22.00 Aligned_cols=21 Identities=29% Similarity=0.572 Sum_probs=15.5
Q ss_pred HHHHhhCCChHHHHHHHHHhh
Q psy7404 167 ILKYLFKPQPKTRDFLSKYGE 187 (196)
Q Consensus 167 ~~~YlmRP~~~~~~~l~~~~~ 187 (196)
+-|||||=..-+.++|.+.+.
T Consensus 15 VrRYL~RKPmTt~eLL~Kfk~ 35 (73)
T d1i27a_ 15 VRRYLTRKPMTTKDLLKKFQT 35 (73)
T ss_dssp HHHHHHHSCBCHHHHHHTSCH
T ss_pred HHHHHhhCCCcHHHHHHHHhh
Confidence 568999977777777766554
No 8
>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}
Probab=12.53 E-value=59 Score=21.78 Aligned_cols=34 Identities=15% Similarity=0.166 Sum_probs=22.6
Q ss_pred HHHHHHHHHhhcCCCCCCCCCeEEEecCCCccchHHHHHHH
Q psy7404 27 SDLVQRRLEYLQNPSDCRTAKKLVCTLNKGCGYGCQLHHVV 67 (196)
Q Consensus 27 t~~vQ~~I~~~QNP~dC~~Ak~L~c~~~~~cGfGc~~H~~~ 67 (196)
+..+++.+..++-|++. +.| |+ +||.|-.++.++
T Consensus 6 ~~~~~~~~~~l~~~~~~---rvL--d~--GCG~G~~a~~la 39 (201)
T d1pjza_ 6 NKDLQQYWSSLNVVPGA---RVL--VP--LCGKSQDMSWLS 39 (201)
T ss_dssp THHHHHHHHHHCCCTTC---EEE--ET--TTCCSHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCC---EEE--Ee--cCcCCHHHHHHH
Confidence 44567778888877663 222 43 999997666554
No 9
>d2zjre1 d.141.1.1 (E:83-172) Ribosomal protein L6 {Deinococcus radiodurans [TaxId: 1299]}
Probab=11.65 E-value=33 Score=22.39 Aligned_cols=9 Identities=22% Similarity=0.733 Sum_probs=6.9
Q ss_pred hhCCCCCCC
Q psy7404 187 EKINFQKPI 195 (196)
Q Consensus 187 ~~l~f~~PI 195 (196)
=++||+|||
T Consensus 23 l~LG~SH~i 31 (90)
T d2zjre1 23 MNIGYSHPV 31 (90)
T ss_dssp CCSSCSSCC
T ss_pred EEEeeeeee
Confidence 367888887
No 10
>d2qamg2 d.141.1.1 (G:82-176) Ribosomal protein L6 {Escherichia coli [TaxId: 562]}
Probab=10.33 E-value=37 Score=22.33 Aligned_cols=8 Identities=25% Similarity=0.908 Sum_probs=6.3
Q ss_pred hCCCCCCC
Q psy7404 188 KINFQKPI 195 (196)
Q Consensus 188 ~l~f~~PI 195 (196)
++||+|||
T Consensus 24 ~LGySH~i 31 (95)
T d2qamg2 24 SLGFSHPV 31 (95)
T ss_dssp CSSSSSCC
T ss_pred EEecceec
Confidence 57888887
Done!