RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy7404
         (196 letters)



>gnl|CDD|211386 cd11300, Fut8_like, Alpha 1-6-fucosyltransferase.  Alpha
           1,6-fucosyltransferase (Fut8) transfers a fucose moiety
           from GDP-fucose to the reducing terminal
           N-acetylglucosamine of the core structure of Asn-linked
           oligosaccharides, in a process termed core fucosylation.
           Core fucosylation is essential for the function of
           growth factor receptors. O-fucosyltransferase-like
           proteins are GDP-fucose dependent enzymes with
           similarities to the family 1 glycosyltransferases (GT1).
           They are soluble ER proteins that may be proteolytically
           cleaved from a membrane-associated preprotein, and are
           involved in the O-fucosylation of protein substrates,
           the core fucosylation of growth factor receptors, and
           other processes.
          Length = 328

 Score =  294 bits (754), Expect = e-101
 Identities = 111/187 (59%), Positives = 136/187 (72%), Gaps = 3/187 (1%)

Query: 13  DSFEAWRLKESHDLSDLVQRRLEYLQNPSDCRTAKKLVCTLNKGCGYGCQLHHVVYCFIV 72
           D    WR KE   LS LVQ+R+  LQNP DC  AKKLVC LNKGCG+GCQLHHVVYC IV
Sbjct: 1   DGDSEWRRKELKKLSKLVQKRIHKLQNPKDCSKAKKLVCNLNKGCGFGCQLHHVVYCLIV 60

Query: 73  AYATQRTLILKSKGWRYARGGWEEVFEPVSKTCTSPEGASTSSWPGHDE---TQVIKLPV 129
           AY T RTLIL SKGWRY+ GGWE+VF P+S+TCT   G +T+ W         QV+KLP+
Sbjct: 61  AYGTNRTLILDSKGWRYSPGGWEKVFLPLSETCTDRSGDNTAVWWWEPTNSDVQVVKLPI 120

Query: 130 IDSISPRPAYLPLSIPKDLEPRLSRLHGDPIVWWIGQILKYLFKPQPKTRDFLSKYGEKI 189
           IDS+  RP +LPL++P+DL  RL RLHGDP VWWIGQ+LKYL +PQP  +D + +  +++
Sbjct: 121 IDSLHSRPPFLPLAVPEDLAERLERLHGDPRVWWIGQLLKYLMRPQPWLQDEIDEAKKEL 180

Query: 190 NFQKPIV 196
            F+ PIV
Sbjct: 181 GFKHPIV 187


>gnl|CDD|211383 cd11296, O-FucT_like, GDP-fucose protein O-fucosyltransferase and
          related proteins.  O-fucosyltransferase-like proteins
          are GDP-fucose dependent enzymes with similarities to
          the family 1 glycosyltransferases (GT1). They are
          soluble ER proteins that may be proteolytically cleaved
          from a membrane-associated preprotein, and are involved
          in the O-fucosylation of protein substrates, the core
          fucosylation of growth factor receptors, and other
          processes.
          Length = 206

 Score = 35.9 bits (83), Expect = 0.006
 Identities = 8/27 (29%), Positives = 14/27 (51%)

Query: 56 GCGYGCQLHHVVYCFIVAYATQRTLIL 82
          G G+  Q +  +   ++A    RTL+L
Sbjct: 8  GGGFNNQRNEFLNALLLAILLGRTLVL 34


>gnl|CDD|216556 pfam01532, Glyco_hydro_47, Glycosyl hydrolase family 47.  Members
           of this family are alpha-mannosidases that catalyze the
           hydrolysis of the terminal 1,2-linked alpha-D-mannose
           residues in the oligo-mannose oligosaccharide
           Man(9)(GlcNAc)(2).
          Length = 445

 Score = 29.1 bits (66), Expect = 1.4
 Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 3/43 (6%)

Query: 151 RLSRLHGDPIVWWIGQ-ILKYLFKPQPKTRDFLSKYGEKINFQ 192
           RLS+L GDP      + ++  L+K Q ++   L      I+  
Sbjct: 153 RLSQLTGDPKYEDAAERVMDALWKSQSRSLPGL--VPIFIDPS 193


>gnl|CDD|235591 PRK05755, PRK05755, DNA polymerase I; Provisional.
          Length = 880

 Score = 29.3 bits (67), Expect = 1.7
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 10/59 (16%)

Query: 138 AYLPLS-IPKDLEPRLSRLHGDPIVWWIGQILKYLFKPQPKTRDFLSKYGEKINFQKPI 195
           AY+PL  + +++   L  L  DP +  +GQ LKY           L++YG  I  +   
Sbjct: 347 AYIPLDQLDREVLAALKPLLEDPAIKKVGQNLKYDLH-------VLARYG--IELRGIA 396


>gnl|CDD|148455 pfam06851, DUF1247, Protein of unknown function (DUF1247).  This
          family contains a number of hypothetical viral proteins
          of unknown function approximately 200 residues long.
          Length = 148

 Score = 26.9 bits (60), Expect = 5.7
 Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 2/31 (6%)

Query: 16 EAWRLKESHDLSDLVQRRLEYLQNP--SDCR 44
          E + + E+ +LSD  +  L  LQ      CR
Sbjct: 21 EDFDINETIELSDETRDYLNALQTEKLFHCR 51


>gnl|CDD|224979 COG2068, COG2068, Uncharacterized MobA-related protein [General
           function prediction only].
          Length = 199

 Score = 26.9 bits (60), Expect = 6.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 141 PLSIPKDLEPRLSRLHGDPIVWWI 164
           P+ + KDL P L+RL GD     +
Sbjct: 140 PVLLSKDLFPALARLSGDVGARQL 163


>gnl|CDD|225390 COG2834, LolA, Outer membrane lipoprotein-sorting protein [Cell
           envelope biogenesis, outer membrane].
          Length = 211

 Score = 26.6 bits (59), Expect = 7.7
 Identities = 17/76 (22%), Positives = 28/76 (36%), Gaps = 2/76 (2%)

Query: 119 HDETQVIKLPVIDSISPRPAYLPLSIPKDL--EPRLSRLHGDPIVWWIGQILKYLFKPQP 176
            D  QV K  + ++    P  L LS  KDL  E  +S L    + + +    K       
Sbjct: 95  PDLEQVTKTWLSEATGNTPLMLLLSNIKDLLNEYNVSLLGTSDVAYVLELTPKANLGNSK 154

Query: 177 KTRDFLSKYGEKINFQ 192
           +      + G  + F+
Sbjct: 155 QRIIVDKEDGTPLRFE 170


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.320    0.137    0.439 

Gapped
Lambda     K      H
   0.267   0.0658    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,938,579
Number of extensions: 883425
Number of successful extensions: 676
Number of sequences better than 10.0: 1
Number of HSP's gapped: 675
Number of HSP's successfully gapped: 14
Length of query: 196
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 104
Effective length of database: 6,857,034
Effective search space: 713131536
Effective search space used: 713131536
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.5 bits)