RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy7404
         (196 letters)



>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase,
           N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
          Length = 526

 Score =  229 bits (585), Expect = 2e-73
 Identities = 113/199 (56%), Positives = 146/199 (73%), Gaps = 3/199 (1%)

Query: 1   SLVQDLNTLQASDSFEAWRLKESHDLSDLVQRRLEYLQNPSDCRTAKKLVCTLNKGCGYG 60
           S++ DL  L  +D    WR KE+ DL++LVQRR+ YLQNP DC  AKKLVC +NKGCGYG
Sbjct: 100 SIMTDLYYLSQTDGAGDWREKEAKDLTELVQRRITYLQNPKDCSKAKKLVCNINKGCGYG 159

Query: 61  CQLHHVVYCFIVAYATQRTLILKSKGWRYARGGWEEVFEPVSKTCTSPEGASTSSWPGHD 120
           CQLHHVVYCF++AY TQRTLIL+S+ WRYA GGWE VF PVS+TCT   G ST  W G  
Sbjct: 160 CQLHHVVYCFMIAYGTQRTLILESQNWRYATGGWETVFRPVSETCTDRSGISTGHWSGEV 219

Query: 121 E---TQVIKLPVIDSISPRPAYLPLSIPKDLEPRLSRLHGDPIVWWIGQILKYLFKPQPK 177
           +    QV++LP++DS+ PRP YLPL++P+DL  RL R+HGDP VWW+ Q +KYL +PQP 
Sbjct: 220 KDKNVQVVELPIVDSLHPRPPYLPLAVPEDLADRLVRVHGDPAVWWVSQFVKYLIRPQPW 279

Query: 178 TRDFLSKYGEKINFQKPIV 196
               + +  +K+ F+ P++
Sbjct: 280 LEKEIEEATKKLGFKHPVI 298


>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase;
           1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A*
           3six_A*
          Length = 330

 Score =  118 bits (297), Expect = 9e-33
 Identities = 30/173 (17%), Positives = 58/173 (33%), Gaps = 22/173 (12%)

Query: 44  RTAKKLVCTLNKGCGYGCQLHHVVYCFIVAYATQRTLILKSKGWRYARGG----WEEVFE 99
              + ++    +  G+G  L  +   +  A  T RTL++  +G  Y        +   FE
Sbjct: 2   TKERFVIS--RRRTGFGDCLWSLASAWSYAQRTGRTLVIDWRGSCYVEQPFSNAFPAFFE 59

Query: 100 PVSKTCTSP----EGASTSSWPGHDETQVIKLPVIDSI--------SPRPAYLPLSIPKD 147
           PV      P    +  +  S+PG    +    P ID I          R     L   ++
Sbjct: 60  PVEDIAGVPVICDDRVNQLSFPGPFFPRWWNRPSIDCINRPDEQIFRERDELTELFQARE 119

Query: 148 LEPRLSRLHGDPIVWWIGQILKYLF----KPQPKTRDFLSKYGEKINFQKPIV 196
                + +    ++W   +  + L     K + + R  +    E+      I+
Sbjct: 120 DSEANTIVCDACLMWRCSEEAERLIFRNIKLRSEIRARIDALYEEHFSGHSII 172


>1hcu_A Alpha-1,2-mannosidase; glycosylation, glycosyl hydrolase; HET: NAG;
           2.37A {Trichoderma reesei} SCOP: a.102.2.1
          Length = 503

 Score = 28.7 bits (64), Expect = 1.4
 Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 1/43 (2%)

Query: 151 RLSRLHGDPIVWWIGQ-ILKYLFKPQPKTRDFLSKYGEKINFQ 192
           RLS L G+P    + Q    YL  P+     +    G  ++  
Sbjct: 187 RLSDLTGNPQYAQLAQKGESYLLNPKGSPEAWPGLIGTFVSTS 229


>2ri9_A Mannosyl-oligosaccharide alpha-1,2-mannosidase; alternative
           conformations, modulation of activity, glycoprot
           glycosidase, hydrolase; HET: NAG NDG MAN MMA; 1.95A
           {Penicillium citrinum} SCOP: a.102.2.1 PDB: 2ri8_A*
           1kkt_A* 1kre_A* 1krf_A*
          Length = 475

 Score = 27.2 bits (60), Expect = 3.9
 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)

Query: 151 RLSRLHGDPIVWWIGQ-ILKYLFKPQPKTRD 180
           RLS L GD     + Q    YL KPQP + +
Sbjct: 173 RLSDLTGDEEYAKLSQKAESYLLKPQPSSSE 203


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 25.7 bits (55), Expect = 9.2
 Identities = 8/26 (30%), Positives = 10/26 (38%), Gaps = 6/26 (23%)

Query: 121 ETQVIK-LPVIDSISPRPAYLPLSIP 145
           E Q +K L    S+     Y   S P
Sbjct: 18  EKQALKKLQ--ASLKL---YADDSAP 38


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.320    0.137    0.439 

Gapped
Lambda     K      H
   0.267   0.0630    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,008,651
Number of extensions: 164308
Number of successful extensions: 281
Number of sequences better than 10.0: 1
Number of HSP's gapped: 279
Number of HSP's successfully gapped: 10
Length of query: 196
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 107
Effective length of database: 4,216,824
Effective search space: 451200168
Effective search space used: 451200168
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.2 bits)