BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy7405
         (87 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P55038|GLTS_SYNY3 Ferredoxin-dependent glutamate synthase 2 OS=Synechocystis sp.
           (strain PCC 6803 / Kazusa) GN=gltS PE=1 SV=2
          Length = 1556

 Score = 33.9 bits (76), Expect = 0.28,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 27/50 (54%)

Query: 20  FISEYPTYPSFKSIYDDPVNPHERINIPGYRYLPISRETYGISPRNIQPH 69
           F+ + P+       Y + V   E++ + G+R +P++ +  GI  +N QPH
Sbjct: 114 FLPQEPSAREVARAYVEEVVRLEKLTVLGWREVPVNSDVLGIQAKNNQPH 163


>sp|O14093|VPS54_SCHPO Vacuolar protein sorting-associated protein 54
          OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
          GN=vps54 PE=1 SV=1
          Length = 949

 Score = 31.2 bits (69), Expect = 1.9,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 5/72 (6%)

Query: 3  APEVHHYHPPPR--GFYRPFISEYPTYP-SFKSIYDDPVNPHERINIPGYRYL-PISRET 58
          AP +   +PP        P  S+  T   SFKS+ +DPVNP   +  P    + P++   
Sbjct: 7  APSISLGYPPTESSAHLAPSFSDSATSTLSFKSLLEDPVNPIRPVYTPTRTEITPVTLSP 66

Query: 59 YGISP-RNIQPH 69
            I+P R  QP+
Sbjct: 67 IPITPVREFQPY 78


>sp|Q04802|NAG1_CANAL Glucosamine-6-phosphate isomerase OS=Candida albicans (strain
           SC5314 / ATCC MYA-2876) GN=NAG1 PE=1 SV=2
          Length = 248

 Score = 30.4 bits (67), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 6/73 (8%)

Query: 18  RPFISEYPTYPSFKSIYDDPVNPHERINIPGYRYLPISRETY-GISPRNIQPHHYPHYDR 76
           R F+   PT  S + IY   +  +++  +     +  + + Y G++P ++Q +HY  YD+
Sbjct: 29  RTFVLGLPTGSSPEGIYAKLIEANKQGRVSFKNVVTFNMDEYLGLAPSDLQSYHYFMYDK 88

Query: 77  PF-----PRVGIH 84
            F     PR  IH
Sbjct: 89  FFNHIDIPRENIH 101


>sp|Q21KD6|SYFA_SACD2 Phenylalanine--tRNA ligase alpha subunit OS=Saccharophagus
           degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=pheS
           PE=3 SV=1
          Length = 337

 Score = 29.3 bits (64), Expect = 7.4,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 33/74 (44%), Gaps = 8/74 (10%)

Query: 2   RAPEVHHYHPPPRGFYRPFISEYPTYPSFK-----SIYDDPVNPHERINIPGYRYLPISR 56
           R PEV   HP  R   R  ISE  T   +       I DD  N  E +NIPG+       
Sbjct: 99  RQPEVGGLHPVTRTLRR--ISEIFTAVGYDVAEGPEIEDDFHN-FEALNIPGHHPARAMH 155

Query: 57  ETYGISPRNIQPHH 70
           +T+ ISP ++   H
Sbjct: 156 DTFYISPSHVLRTH 169


>sp|P46033|GLNA1_FRAAL Glutamine synthetase 1 OS=Frankia alni GN=glnA PE=3 SV=1
          Length = 474

 Score = 29.3 bits (64), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 16/53 (30%), Positives = 27/53 (50%)

Query: 14  RGFYRPFISEYPTYPSFKSIYDDPVNPHERINIPGYRYLPISRETYGISPRNI 66
           RGF     S+    P  ++ + DP   H+ + +  + + PI++E Y   PRNI
Sbjct: 58  RGFQAIHESDMLLLPDPQTAFVDPFREHKTLAMTFFIHDPITKEQYSRDPRNI 110


>sp|Q6MWV3|GALE_MYCTU UDP-glucose 4-epimerase OS=Mycobacterium tuberculosis GN=galE1 PE=3
           SV=1
          Length = 314

 Score = 28.9 bits (63), Expect = 8.9,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 22/44 (50%)

Query: 25  PTYPSFKSIYDDPVNPHERINIPGYRYLPISRETYGISPRNIQP 68
           P YP+ ++   DP +P+    + G  YL   R  YG+   +I P
Sbjct: 130 PEYPTPETAPTDPASPYAAGKVAGEIYLNTFRHLYGLDCSHIAP 173


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.323    0.147    0.505 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,982,447
Number of Sequences: 539616
Number of extensions: 1842862
Number of successful extensions: 3550
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 3508
Number of HSP's gapped (non-prelim): 72
length of query: 87
length of database: 191,569,459
effective HSP length: 57
effective length of query: 30
effective length of database: 160,811,347
effective search space: 4824340410
effective search space used: 4824340410
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)