Query psy7405
Match_columns 87
No_of_seqs 17 out of 19
Neff 2.0
Searched_HMMs 29240
Date Fri Aug 16 17:25:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7405.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7405hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1i11_A Transcription factor SO 12.6 51 0.0017 19.0 0.3 14 45-58 68-81 (81)
2 1yg6_A ATP-dependent CLP prote 6.2 1.2E+02 0.0041 20.4 0.1 8 41-48 60-67 (193)
3 4f9c_B Protein DBF4 homolog A; 6.0 2.6E+02 0.0088 18.8 1.7 16 15-30 21-36 (144)
4 3u2b_C Transcription factor SO 5.7 1.7E+02 0.0057 16.4 0.5 9 46-54 67-75 (79)
5 3f27_D Transcription factor SO 5.4 1.9E+02 0.0065 16.4 0.7 11 46-56 71-81 (83)
6 1hry_A Human SRY; DNA, DNA-bin 5.1 1.8E+02 0.0061 16.2 0.4 6 47-52 70-75 (76)
7 2cby_A ATP-dependent CLP prote 5.0 1.6E+02 0.0054 20.1 0.1 8 41-48 61-68 (208)
8 1nzi_A Complement C1S componen 4.9 2.1E+02 0.0072 17.6 0.6 9 41-49 5-13 (159)
9 1m1l_A Suppressor of fused; ge 4.9 2.8E+02 0.0096 20.0 1.4 40 21-66 35-74 (236)
10 2nsc_A Trigger factor, TF; cha 4.8 1.9E+02 0.0065 17.9 0.4 10 41-50 36-45 (109)
No 1
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=12.61 E-value=51 Score=19.03 Aligned_cols=14 Identities=36% Similarity=0.838 Sum_probs=3.7
Q ss_pred ccCCcccccccccc
Q psy7405 45 NIPGYRYLPISRET 58 (87)
Q Consensus 45 ~sPGY~Y~PVsRet 58 (87)
.-|+|.|.|..+-|
T Consensus 68 ~~p~Yky~pr~~~~ 81 (81)
T 1i11_A 68 KYPDYKYKPRPKRT 81 (81)
T ss_dssp TCSCC---------
T ss_pred HCCCCeeccCCCCC
Confidence 45889988876543
No 2
>1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* 3q7h_A
Probab=6.20 E-value=1.2e+02 Score=20.35 Aligned_cols=8 Identities=50% Similarity=0.559 Sum_probs=6.1
Q ss_pred CcccccCC
Q psy7405 41 HERINIPG 48 (87)
Q Consensus 41 ~~RI~sPG 48 (87)
.=+|||||
T Consensus 60 ~l~InSPG 67 (193)
T 1yg6_A 60 YLYINSPG 67 (193)
T ss_dssp EEEEEECC
T ss_pred EEEEECcC
Confidence 45788888
No 3
>4f9c_B Protein DBF4 homolog A; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_B* 4f9b_B* 4f9a_B*
Probab=6.03 E-value=2.6e+02 Score=18.83 Aligned_cols=16 Identities=31% Similarity=0.692 Sum_probs=11.3
Q ss_pred CccCCcccCCCCCCCc
Q psy7405 15 GFYRPFISEYPTYPSF 30 (87)
Q Consensus 15 ~~frp~~~d~Ptwp~~ 30 (87)
+-|||+-.+++.||-.
T Consensus 21 r~yRP~y~e~~~~P~i 36 (144)
T 4f9c_B 21 QLYRPFYLQLTNMPFI 36 (144)
T ss_dssp C--CCEEEECSSCCCC
T ss_pred CCcCCCeeccCcCCcc
Confidence 3589998899999854
No 4
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=5.65 E-value=1.7e+02 Score=16.44 Aligned_cols=9 Identities=44% Similarity=1.047 Sum_probs=5.5
Q ss_pred cCCcccccc
Q psy7405 46 IPGYRYLPI 54 (87)
Q Consensus 46 sPGY~Y~PV 54 (87)
-|+|.|.|-
T Consensus 67 ~p~Yky~Pr 75 (79)
T 3u2b_C 67 YPDYKYRPR 75 (79)
T ss_dssp SSSCCCCCC
T ss_pred CCCCeeCCC
Confidence 466666663
No 5
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=5.38 E-value=1.9e+02 Score=16.40 Aligned_cols=11 Identities=45% Similarity=0.957 Sum_probs=6.4
Q ss_pred cCCcccccccc
Q psy7405 46 IPGYRYLPISR 56 (87)
Q Consensus 46 sPGY~Y~PVsR 56 (87)
-|+|.|.|-.+
T Consensus 71 ~~~Yky~P~~k 81 (83)
T 3f27_D 71 HPNYKYRPRRR 81 (83)
T ss_dssp CTTCCCCCCC-
T ss_pred CCCCeeCCccC
Confidence 46777766543
No 6
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=5.13 E-value=1.8e+02 Score=16.24 Aligned_cols=6 Identities=50% Similarity=1.337 Sum_probs=2.4
Q ss_pred CCcccc
Q psy7405 47 PGYRYL 52 (87)
Q Consensus 47 PGY~Y~ 52 (87)
|+|.|.
T Consensus 70 ~~Yky~ 75 (76)
T 1hry_A 70 PNYKYR 75 (76)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 344443
No 7
>2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A
Probab=4.95 E-value=1.6e+02 Score=20.09 Aligned_cols=8 Identities=50% Similarity=0.642 Sum_probs=6.1
Q ss_pred CcccccCC
Q psy7405 41 HERINIPG 48 (87)
Q Consensus 41 ~~RI~sPG 48 (87)
.=+|+|||
T Consensus 61 ~l~InSPG 68 (208)
T 2cby_A 61 SLYINSPG 68 (208)
T ss_dssp EEEEEECC
T ss_pred EEEEECCC
Confidence 45888888
No 8
>1nzi_A Complement C1S component; calcium, innate immunity, modular structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1
Probab=4.87 E-value=2.1e+02 Score=17.59 Aligned_cols=9 Identities=33% Similarity=0.460 Sum_probs=6.0
Q ss_pred CcccccCCc
Q psy7405 41 HERINIPGY 49 (87)
Q Consensus 41 ~~RI~sPGY 49 (87)
...|.||||
T Consensus 5 ~G~i~SP~y 13 (159)
T 1nzi_A 5 YGEILSPNY 13 (159)
T ss_dssp EEEEECTTT
T ss_pred CEEEECCCC
Confidence 456777776
No 9
>1m1l_A Suppressor of fused; gene regulation, hedgehog signaling, signal transduction, signaling protein; 2.65A {Homo sapiens} SCOP: d.260.1.1
Probab=4.85 E-value=2.8e+02 Score=19.96 Aligned_cols=40 Identities=20% Similarity=0.345 Sum_probs=29.4
Q ss_pred ccCCCCCCCccccccCCCCCCcccccCCcccccccccccccCcccC
Q psy7405 21 ISEYPTYPSFKSIYDDPVNPHERINIPGYRYLPISRETYGISPRNI 66 (87)
Q Consensus 21 ~~d~Ptwp~~ksIyddp~~a~~RI~sPGY~Y~PVsRetYGySPR~I 66 (87)
..-.|.|...-|||+.+..+.+.|. |.+||- |||+|-...
T Consensus 35 ~lGG~dpLD~isiy~~~~~p~~~v~-~~~hyV-----T~GlSel~~ 74 (236)
T 1m1l_A 35 WLGGPDPLDYVSMYRNVGSPSANIP-EHWHYI-----SFGLSDLYG 74 (236)
T ss_dssp GGTCSCSCSEEEEEEECCBTTTTBC-CEEEEE-----EESSSCSSC
T ss_pred ecCCCCCCCcEEEecCCCCcccCCC-CCEEEE-----ecCCCcccc
Confidence 3556778888899998887776664 567774 889987654
No 10
>2nsc_A Trigger factor, TF; chaperone; 2.20A {Thermotoga maritima} PDB: 2nsb_A
Probab=4.76 E-value=1.9e+02 Score=17.89 Aligned_cols=10 Identities=50% Similarity=1.318 Sum_probs=7.3
Q ss_pred CcccccCCcc
Q psy7405 41 HERINIPGYR 50 (87)
Q Consensus 41 ~~RI~sPGY~ 50 (87)
+.+++.||+|
T Consensus 36 ~k~~~ipGFR 45 (109)
T 2nsc_A 36 NQRVEIPGFR 45 (109)
T ss_dssp HTTCCCTTSC
T ss_pred hccCCCCCcC
Confidence 4567888886
Done!