RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy7405
         (87 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 27.3 bits (60), Expect = 0.65
 Identities = 8/45 (17%), Positives = 17/45 (37%), Gaps = 18/45 (40%)

Query: 24   YPTYPSFKSIYD--DPVNPHERINIPGYRYLPISRETYGISPRNI 66
            Y T  + + +++  D              +    ++TYG S  +I
Sbjct: 1636 YKTSKAAQDVWNRAD-------------NHF---KDTYGFSILDI 1664



 Score = 26.6 bits (58), Expect = 1.1
 Identities = 8/43 (18%), Positives = 12/43 (27%), Gaps = 12/43 (27%)

Query: 40  PH-ERINIPGYRYLPISRETYGISPRNIQPHHYPHYDRPFPRV 81
           P  ER      R+LP++            P H          +
Sbjct: 408 PFSERKLKFSNRFLPVA-----------SPFHSHLLVPASDLI 439


>3muu_A Structural polyprotein; beta barrels, IG-like folds, viral protein;
           HET: NAG BMA MAN; 3.29A {Sindbis virus} PDB: 3muw_A
           3muw_U 1z8y_A 1z8y_B
          Length = 750

 Score = 25.8 bits (56), Expect = 2.3
 Identities = 12/70 (17%), Positives = 23/70 (32%), Gaps = 3/70 (4%)

Query: 2   RAPEVHHYHPPPRGFYRPFISEYPTYPSFKSIYDDPVNPHERINIPGYRYLPISRETYGI 61
            AP V H     +       +++ T  + + +  +P    E I     R   + R+    
Sbjct: 272 HAPNVIHGF---KHISLQLDTDHLTLLTTRRLGANPEPTTEWIVGKTVRNFTVDRDGLEY 328

Query: 62  SPRNIQPHHY 71
              N +P   
Sbjct: 329 IWGNHEPVRV 338


>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
           cerevisiae}
          Length = 231

 Score = 23.9 bits (51), Expect = 8.1
 Identities = 10/49 (20%), Positives = 16/49 (32%), Gaps = 12/49 (24%)

Query: 23  EYPTYPSFKSIY---DDPVNPHERI---------NIPGYRYLPISRETY 59
            Y +     S+       V P  RI            G ++L I+ E +
Sbjct: 123 NYSSEVKENSVDSDDKAKVPPLIRIVSGLELSDTKQKGKKFLVIAYEPF 171


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.323    0.147    0.505 

Gapped
Lambda     K      H
   0.267   0.0515    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,658,272
Number of extensions: 86987
Number of successful extensions: 211
Number of sequences better than 10.0: 1
Number of HSP's gapped: 210
Number of HSP's successfully gapped: 22
Length of query: 87
Length of database: 6,701,793
Length adjustment: 55
Effective length of query: 32
Effective length of database: 5,166,138
Effective search space: 165316416
Effective search space used: 165316416
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.9 bits)