RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7405
         (87 letters)



>d2o34a1 d.96.2.2 (A:1-248) Hypothetical protein DVU1097
          {Desulfovibrio vulgaris [TaxId: 881]}
          Length = 248

 Score = 22.9 bits (49), Expect = 6.4
 Identities = 11/53 (20%), Positives = 17/53 (32%), Gaps = 3/53 (5%)

Query: 8  HYHPPPRGFYRPFISEYPTYPSFKSIYD--DP-VNPHERINIPGYRYLPISRE 57
          H H  P   YR   +       F+ + +  D  V     +  P   Y+   R 
Sbjct: 5  HVHTSPVRDYRNRCARREGETVFQVVVEETDLRVTALAELATPMAAYVGELRA 57


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.147    0.505 

Gapped
Lambda     K      H
   0.267   0.0610    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 420,050
Number of extensions: 19068
Number of successful extensions: 50
Number of sequences better than 10.0: 1
Number of HSP's gapped: 50
Number of HSP's successfully gapped: 10
Length of query: 87
Length of database: 2,407,596
Length adjustment: 52
Effective length of query: 35
Effective length of database: 1,693,636
Effective search space: 59277260
Effective search space used: 59277260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.1 bits)