Query psy7408
Match_columns 66
No_of_seqs 12 out of 14
Neff 1.6
Searched_HMMs 29240
Date Fri Aug 16 17:29:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7408.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7408hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1r4g_A RNA polymerase alpha su 82.2 0.63 2.2E-05 27.8 1.6 24 7-32 7-30 (53)
2 2w9j_A Signal recognition part 57.8 3.5 0.00012 25.4 1.0 18 18-35 66-83 (91)
3 1e8o_B SRP14, signal recogniti 57.6 3.9 0.00013 25.6 1.2 18 19-36 75-92 (106)
4 3d9y_A Profilin; yeast, actin- 56.6 4.8 0.00016 24.8 1.5 12 23-34 3-15 (127)
5 1ypr_A Profilin; actin-binding 54.0 4.5 0.00015 25.0 1.0 12 23-34 2-13 (125)
6 2pbd_P Profilin-1, profilin I; 49.5 4.4 0.00015 25.6 0.5 12 23-34 3-14 (139)
7 2v8f_A Profilin-2, profilin II 49.2 4.9 0.00017 25.6 0.6 12 23-34 4-15 (140)
8 1acf_A Profilin I; protein bin 47.1 7.8 0.00027 23.8 1.3 12 23-34 2-14 (125)
9 1x3a_A Synapse associated prot 46.5 5.4 0.00018 24.6 0.5 19 20-38 74-95 (100)
10 2l6p_A PHAC1, PHAC2 and PHAD g 43.6 18 0.00062 22.5 2.7 22 17-38 93-114 (124)
11 3nul_A Profilin I; cytoskeleto 39.7 12 0.0004 23.2 1.3 10 23-32 2-12 (130)
12 1s2x_A CAG-Z; CAG pathogenicit 29.7 22 0.00077 25.3 1.6 17 19-35 35-51 (206)
13 1914_A Signal recognition part 27.9 21 0.00073 25.4 1.2 18 19-36 95-112 (232)
14 2l6n_A Uncharacterized protein 26.3 40 0.0014 21.3 2.2 21 17-37 100-120 (132)
15 2doq_D SFI1P; centrin, CDC31P, 23.4 53 0.0018 20.9 2.3 19 10-28 3-21 (94)
16 3hj4_A Minor editosome-associa 22.0 53 0.0018 24.5 2.4 22 2-28 279-300 (384)
17 3nec_A Profilin, inflammatory 20.4 29 0.001 22.8 0.7 12 23-34 7-19 (166)
No 1
>1r4g_A RNA polymerase alpha subunit; three helix-bundle, viral protein, transferase; NMR {Sendai virus} SCOP: a.8.5.1
Probab=82.20 E-value=0.63 Score=27.79 Aligned_cols=24 Identities=29% Similarity=0.624 Sum_probs=20.5
Q ss_pred hhhhccCCchhhHHHHHHHHHHhhcc
Q psy7408 7 LDMIGRNEPITRKAKFWQSYVRALKG 32 (66)
Q Consensus 7 LdMIGrNE~~skKAkFWqsYvraLKG 32 (66)
|-++=.|+|+|+++| |+||.+|+-
T Consensus 7 L~~vI~nS~LS~~~K--~sYi~~L~~ 30 (53)
T 1r4g_A 7 LRLVIESSPLSRAEK--AAYVKSLSK 30 (53)
T ss_dssp HHHHHTTSCCCSHHH--HHHHHHHHT
T ss_pred HhhhhcCCcccHHHH--HHHHHHHHH
Confidence 556678999999999 999999974
No 2
>2w9j_A Signal recognition particle subunit SRP14; radiation-induced phasing, RNA-BI ribonucleoprotein, signaling P arsenic, ALU-domain; 2.60A {Schizosaccharomyces pombe}
Probab=57.81 E-value=3.5 Score=25.39 Aligned_cols=18 Identities=33% Similarity=0.538 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHhhccccc
Q psy7408 18 RKAKFWQSYVRALKGSTA 35 (66)
Q Consensus 18 kKAkFWqsYvraLKGs~D 35 (66)
.=.+||++|...+|+.=|
T Consensus 66 ~l~~F~~~Y~~v~K~~M~ 83 (91)
T 2w9j_A 66 YFTDFFQSYAEVXKGQIV 83 (91)
T ss_dssp GHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCCc
Confidence 347899999999998765
No 3
>1e8o_B SRP14, signal recognition particle 14 kDa protein; ALU ribonucleoprotein particle, protein recognition of AN RNA U-turn, translational control; HET: GDP; 3.20A {Homo sapiens} SCOP: d.49.1.1 PDB: 1e8s_B 1ry1_D*
Probab=57.56 E-value=3.9 Score=25.59 Aligned_cols=18 Identities=22% Similarity=0.265 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhhcccccc
Q psy7408 19 KAKFWQSYVRALKGSTAI 36 (66)
Q Consensus 19 KAkFWqsYvraLKGs~Di 36 (66)
=.+||++|...||+.=|-
T Consensus 75 l~~F~~~Y~~v~K~~M~g 92 (106)
T 1e8o_B 75 VNKFQMAYSNLLRANMDG 92 (106)
T ss_dssp HHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHhcccc
Confidence 368999999999988663
No 4
>3d9y_A Profilin; yeast, actin-binding, cytoskeleton, protein; 1.65A {Schizosaccharomyces pombe} SCOP: d.110.1.0 PDB: 3dav_A
Probab=56.63 E-value=4.8 Score=24.81 Aligned_cols=12 Identities=50% Similarity=1.079 Sum_probs=10.2
Q ss_pred HHHHHH-hhcccc
Q psy7408 23 WQSYVR-ALKGST 34 (66)
Q Consensus 23 WqsYvr-aLKGs~ 34 (66)
||+||. .|-|+.
T Consensus 3 Wq~Yvd~~L~~~~ 15 (127)
T 3d9y_A 3 WQAYVDTSLLGTG 15 (127)
T ss_dssp HHHHHHTTTGGGS
T ss_pred HHHHHHHhhcccC
Confidence 999999 788764
No 5
>1ypr_A Profilin; actin-binding protein, cytoskeleton; 2.30A {Saccharomyces cerevisiae} SCOP: d.110.1.1 PDB: 1k0k_A
Probab=53.95 E-value=4.5 Score=25.02 Aligned_cols=12 Identities=42% Similarity=0.947 Sum_probs=10.4
Q ss_pred HHHHHHhhcccc
Q psy7408 23 WQSYVRALKGST 34 (66)
Q Consensus 23 WqsYvraLKGs~ 34 (66)
||+||..|-|+.
T Consensus 2 Wq~yvd~L~~~g 13 (125)
T 1ypr_A 2 WQAYTDNLIGTG 13 (125)
T ss_dssp HHHHHHHHHHTS
T ss_pred hHHHHHHHhcCC
Confidence 999999998754
No 6
>2pbd_P Profilin-1, profilin I; ternary complex, profilin, actin, poly-proline, loading poly-Pro site, GAB domain, structural protein; HET: HIC ATP; 1.50A {Homo sapiens} SCOP: d.110.1.1 PDB: 1fik_A 1cjf_A 1pfl_A 1fil_A* 2pav_P* 3chw_P* 1awi_A 1cf0_A* 1pne_A 1hlu_P 2btf_P* 3u4l_P* 3ub5_P*
Probab=49.46 E-value=4.4 Score=25.64 Aligned_cols=12 Identities=25% Similarity=0.800 Sum_probs=10.4
Q ss_pred HHHHHHhhcccc
Q psy7408 23 WQSYVRALKGST 34 (66)
Q Consensus 23 WqsYvraLKGs~ 34 (66)
||+||..|-|+.
T Consensus 3 Wq~Yvd~L~~~g 14 (139)
T 2pbd_P 3 WNAYIDNLMADG 14 (139)
T ss_dssp SHHHHHHHHTTS
T ss_pred hHHHHHHHhccC
Confidence 999999998764
No 7
>2v8f_A Profilin-2, profilin IIA; alternative splicing, protein-binding, cytoplasm, acetylation, cytoskeleton, actin-binding; 1.1A {Mus musculus} PDB: 2v8c_A 2vk3_A* 1d1j_A*
Probab=49.18 E-value=4.9 Score=25.61 Aligned_cols=12 Identities=50% Similarity=0.825 Sum_probs=10.5
Q ss_pred HHHHHHhhcccc
Q psy7408 23 WQSYVRALKGST 34 (66)
Q Consensus 23 WqsYvraLKGs~ 34 (66)
||+||..|-|+.
T Consensus 4 Wq~yvd~L~~~g 15 (140)
T 2v8f_A 4 WQSYVDNLMCDG 15 (140)
T ss_dssp THHHHHHHHTTS
T ss_pred HHHHHHHHhccC
Confidence 999999998764
No 8
>1acf_A Profilin I; protein binding, actin-binding protein, contractIle protein; 2.00A {Acanthamoeba castellanii} SCOP: d.110.1.1 PDB: 1prq_A 2prf_A 1f2k_A 2acg_A
Probab=47.15 E-value=7.8 Score=23.77 Aligned_cols=12 Identities=50% Similarity=1.088 Sum_probs=10.2
Q ss_pred HHHHHHh-hcccc
Q psy7408 23 WQSYVRA-LKGST 34 (66)
Q Consensus 23 WqsYvra-LKGs~ 34 (66)
||+||.. |-|+.
T Consensus 2 Wq~yvd~~L~~~g 14 (125)
T 1acf_A 2 WQTYVDTNLVGTG 14 (125)
T ss_dssp HHHHHHTTTGGGT
T ss_pred hHHHHHhhhhhCC
Confidence 9999998 88764
No 9
>1x3a_A Synapse associated protein 1; BSD domain, homolog of the drosophila SAP47, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.240.1.1
Probab=46.46 E-value=5.4 Score=24.64 Aligned_cols=19 Identities=32% Similarity=0.679 Sum_probs=13.3
Q ss_pred HHHHHHH---HHhhcccccccc
Q psy7408 20 AKFWQSY---VRALKGSTAILL 38 (66)
Q Consensus 20 AkFWqsY---vraLKGs~DirA 38 (66)
..||+.| |.-|+-+.++|+
T Consensus 74 ~~FW~rYFyrv~~i~q~ee~r~ 95 (100)
T 1x3a_A 74 EVFWRNYFYRVSLIKQSAQLTS 95 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 5799999 455666666655
No 10
>2l6p_A PHAC1, PHAC2 and PHAD genes; DUF971, structural genomics, PSI-biology, protein structure initiative, joint center for structural genomics; NMR {Pseudomonas aeruginosa}
Probab=43.60 E-value=18 Score=22.53 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=17.6
Q ss_pred hhHHHHHHHHHHhhcccccccc
Q psy7408 17 TRKAKFWQSYVRALKGSTAILL 38 (66)
Q Consensus 17 skKAkFWqsYvraLKGs~DirA 38 (66)
..+...|+.|++.|+..---|.
T Consensus 93 ~~~~~~~~~y~~~l~~~g~~r~ 114 (124)
T 2l6p_A 93 TRKDQLWADYLAELASAGKSRD 114 (124)
T ss_dssp TTHHHHHHHHHHHHHHTTCCSS
T ss_pred hhHHHHHHHHHHHHHHcCCCCC
Confidence 4578899999999987765553
No 11
>3nul_A Profilin I; cytoskeleton, actin binding protein; HET: MSE; 1.60A {Arabidopsis thaliana} SCOP: d.110.1.1 PDB: 1a0k_A 1cqa_A 1g5u_A
Probab=39.65 E-value=12 Score=23.25 Aligned_cols=10 Identities=60% Similarity=0.993 Sum_probs=8.9
Q ss_pred HHHHHH-hhcc
Q psy7408 23 WQSYVR-ALKG 32 (66)
Q Consensus 23 WqsYvr-aLKG 32 (66)
||+||. .|-|
T Consensus 2 Wq~YVd~~L~~ 12 (130)
T 3nul_A 2 WQSYVDDHLMC 12 (130)
T ss_dssp HHHHHHHTTSC
T ss_pred HHHHHHhhhcc
Confidence 999998 7877
No 12
>1s2x_A CAG-Z; CAG pathogenicity island, type IV secretion system, unknown function; 1.90A {Helicobacter pylori} SCOP: a.47.3.1
Probab=29.68 E-value=22 Score=25.30 Aligned_cols=17 Identities=41% Similarity=0.645 Sum_probs=15.3
Q ss_pred HHHHHHHHHHhhccccc
Q psy7408 19 KAKFWQSYVRALKGSTA 35 (66)
Q Consensus 19 KAkFWqsYvraLKGs~D 35 (66)
..||-|+|..+||.|.|
T Consensus 35 rdkfiqnyatslkdsnd 51 (206)
T 1s2x_A 35 RDKFIQNYATSLKDSND 51 (206)
T ss_dssp HHHHHHHHTGGGGGCCS
T ss_pred HHHHHHHHHhhcccCCC
Confidence 46899999999999977
No 13
>1914_A Signal recognition particle 9/14 fusion protein; ALU domain, RNA binding, signal recognition particle (SRP), translation regulation; 2.53A {Mus musculus} SCOP: d.49.1.1 d.49.1.1 PDB: 1e8o_A* 1e8s_A 1ry1_C*
Probab=27.87 E-value=21 Score=25.42 Aligned_cols=18 Identities=22% Similarity=0.265 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhhcccccc
Q psy7408 19 KAKFWQSYVRALKGSTAI 36 (66)
Q Consensus 19 KAkFWqsYvraLKGs~Di 36 (66)
=.+||++|...||+.=|-
T Consensus 95 l~~F~~~Ya~VlKa~M~g 112 (232)
T 1914_A 95 VNKFQMAYSNLLRANMDG 112 (232)
T ss_dssp HHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHhcccc
Confidence 368999999999987664
No 14
>2l6n_A Uncharacterized protein YP_001092504.1; PJ06155C, DUF971, structural genomics, PSI-biology, protein initiative; NMR {Shewanella loihica}
Probab=26.28 E-value=40 Score=21.29 Aligned_cols=21 Identities=19% Similarity=0.602 Sum_probs=16.3
Q ss_pred hhHHHHHHHHHHhhccccccc
Q psy7408 17 TRKAKFWQSYVRALKGSTAIL 37 (66)
Q Consensus 17 skKAkFWqsYvraLKGs~Dir 37 (66)
..+...|+.|++.|+..---|
T Consensus 100 ~~~~~~w~~yl~~l~~~g~~r 120 (132)
T 2l6n_A 100 SNQVDLWENYLARLRAAKASR 120 (132)
T ss_dssp TTTTHHHHHHHHHHHHHTCCC
T ss_pred hhHHHHHHHHHHHHHHcCCCC
Confidence 457789999999998665444
No 15
>2doq_D SFI1P; centrin, CDC31P, spindle POLE BODY, centrosome, cell cycle; 3.00A {Saccharomyces cerevisiae}
Probab=23.43 E-value=53 Score=20.92 Aligned_cols=19 Identities=32% Similarity=0.295 Sum_probs=17.5
Q ss_pred hccCCchhhHHHHHHHHHH
Q psy7408 10 IGRNEPITRKAKFWQSYVR 28 (66)
Q Consensus 10 IGrNE~~skKAkFWqsYvr 28 (66)
.|.|+++++=+.-|.+||+
T Consensus 3 ~~l~~nL~~le~iW~~yv~ 21 (94)
T 2doq_D 3 LGSNEEANRFANQAKLRVQ 21 (94)
T ss_dssp CCCSSTTHHHHHHHHHHHH
T ss_pred cchhhhHHHHHHHHHHHHH
Confidence 5889999999999999997
No 16
>3hj4_A Minor editosome-associated tutase; nucleotidyltransferase, RNA UTP-binding, transferase; 1.56A {Trypanosoma brucei} PDB: 3hiy_A 3hj1_A*
Probab=22.00 E-value=53 Score=24.47 Aligned_cols=22 Identities=27% Similarity=0.782 Sum_probs=19.2
Q ss_pred hhhhhhhhhccCCchhhHHHHHHHHHH
Q psy7408 2 MLKQHLDMIGRNEPITRKAKFWQSYVR 28 (66)
Q Consensus 2 mfK~HLdMIGrNE~~skKAkFWqsYvr 28 (66)
+-|+|++.+| +||+|=|.-+|-
T Consensus 279 ~~~~~~~~~~-----~~~~~~w~~~~~ 300 (384)
T 3hj4_A 279 VVRRHLELLG-----SRKRLEWEKHIA 300 (384)
T ss_dssp HHHHHHHHHH-----HHHHHHHHHHHH
T ss_pred hhhhhhhhcc-----chhhhhhhhhhh
Confidence 4689999998 799999998885
No 17
>3nec_A Profilin, inflammatory profilin; actin-binding, actin-binding protein; HET: MSE; 1.70A {Toxoplasma gondii}
Probab=20.43 E-value=29 Score=22.82 Aligned_cols=12 Identities=25% Similarity=0.548 Sum_probs=9.6
Q ss_pred HHHHHH-hhcccc
Q psy7408 23 WQSYVR-ALKGST 34 (66)
Q Consensus 23 WqsYvr-aLKGs~ 34 (66)
||+||. .|-|+.
T Consensus 7 Wq~YVd~~L~~~g 19 (166)
T 3nec_A 7 WDPVVKEWLVDTG 19 (166)
T ss_dssp CHHHHHHHHTTTS
T ss_pred HHHHHHHHhhccC
Confidence 999998 587654
Done!