Query psy7408
Match_columns 66
No_of_seqs 12 out of 14
Neff 1.6
Searched_HMMs 13730
Date Fri Aug 16 17:29:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7408.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/7408hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1r4ga_ a.8.5.1 (A:) RNA polym 78.2 0.48 3.5E-05 26.9 1.6 24 7-32 7-30 (53)
2 d1914a2 d.49.1.1 (A:2001-2097) 70.9 0.72 5.3E-05 27.3 1.2 18 18-35 75-92 (97)
3 d1d1ja_ d.110.1.1 (A:) Profili 70.0 0.66 4.8E-05 28.0 0.9 12 23-34 3-14 (138)
4 d1ypra_ d.110.1.1 (A:) Profili 69.6 0.69 5E-05 27.1 0.9 11 23-33 2-12 (125)
5 d2pbdp1 d.110.1.1 (P:1-139) Pr 62.8 0.93 6.8E-05 27.2 0.5 12 23-34 3-14 (139)
6 d2ha2a1 c.69.1.1 (A:1-542) Ace 47.3 4.3 0.00032 26.4 1.8 19 15-33 524-542 (542)
7 d1acfa_ d.110.1.1 (A:) Profili 47.2 3.1 0.00023 24.1 1.0 13 23-35 2-15 (125)
8 d1m70a1 a.3.1.4 (A:1-92) Cytoc 38.1 5.3 0.00039 20.1 0.9 12 22-33 80-91 (92)
9 d1s2xa_ a.47.3.1 (A:) Cag-Z {H 30.1 10 0.00076 24.9 1.6 17 19-35 29-45 (180)
10 d1j34c_ g.32.1.1 (C:) Coagulat 28.1 11 0.00079 20.2 1.2 13 15-27 34-46 (46)
11 d3nula_ d.110.1.1 (A:) Profili 24.1 13 0.00098 21.6 1.2 7 23-29 2-8 (130)
12 d1gtma2 c.58.1.1 (A:3-180) Glu 23.8 29 0.0021 21.9 2.9 25 17-41 115-143 (178)
13 d1x3aa1 a.240.1.1 (A:8-94) Syn 22.9 15 0.0011 20.8 1.2 11 19-29 66-76 (87)
14 d1hm6a_ a.65.1.1 (A:) Annexin 21.8 32 0.0024 22.7 2.9 35 24-61 18-53 (343)
No 1
>d1r4ga_ a.8.5.1 (A:) RNA polymerase alpha subunit {Sendai virus [TaxId: 11191]}
Probab=78.24 E-value=0.48 Score=26.87 Aligned_cols=24 Identities=29% Similarity=0.624 Sum_probs=20.5
Q ss_pred hhhhccCCchhhHHHHHHHHHHhhcc
Q psy7408 7 LDMIGRNEPITRKAKFWQSYVRALKG 32 (66)
Q Consensus 7 LdMIGrNE~~skKAkFWqsYvraLKG 32 (66)
|-++=.|+|+|+++| |+||..|+-
T Consensus 7 L~lvI~nS~LS~~~K--~aYi~~L~~ 30 (53)
T d1r4ga_ 7 LRLVIESSPLSRAEK--AAYVKSLSK 30 (53)
T ss_dssp HHHHHTTSCCCSHHH--HHHHHHHHT
T ss_pred hhhheeCCCcchHHH--HHHHHHHHh
Confidence 556778999999999 899999974
No 2
>d1914a2 d.49.1.1 (A:2001-2097) Signal recognition particle 14KDa protein, SRP14 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=70.86 E-value=0.72 Score=27.29 Aligned_cols=18 Identities=22% Similarity=0.355 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHhhccccc
Q psy7408 18 RKAKFWQSYVRALKGSTA 35 (66)
Q Consensus 18 kKAkFWqsYvraLKGs~D 35 (66)
.=.+||++|...+|+.-|
T Consensus 75 ~~~~F~~~Y~~v~Ka~M~ 92 (97)
T d1914a2 75 EVNKFQMAYSNLLRANMD 92 (97)
T ss_dssp SHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhhCc
Confidence 346899999999998754
No 3
>d1d1ja_ d.110.1.1 (A:) Profilin (actin-binding protein) {Human (Homo sapiens), isoform II [TaxId: 9606]}
Probab=70.03 E-value=0.66 Score=28.02 Aligned_cols=12 Identities=50% Similarity=0.825 Sum_probs=11.0
Q ss_pred HHHHHHhhcccc
Q psy7408 23 WQSYVRALKGST 34 (66)
Q Consensus 23 WqsYvraLKGs~ 34 (66)
||+||..|-|+.
T Consensus 3 Wq~Yvd~L~~~g 14 (138)
T d1d1ja_ 3 WQSYVDNLMCDG 14 (138)
T ss_dssp THHHHHHHSTTS
T ss_pred hHHHHHhhcccc
Confidence 999999999885
No 4
>d1ypra_ d.110.1.1 (A:) Profilin (actin-binding protein) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=69.62 E-value=0.69 Score=27.10 Aligned_cols=11 Identities=45% Similarity=1.066 Sum_probs=10.0
Q ss_pred HHHHHHhhccc
Q psy7408 23 WQSYVRALKGS 33 (66)
Q Consensus 23 WqsYvraLKGs 33 (66)
||+||..|.|+
T Consensus 2 Wq~Yvd~L~~~ 12 (125)
T d1ypra_ 2 WQAYTDNLIGT 12 (125)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHhHhcC
Confidence 99999999876
No 5
>d2pbdp1 d.110.1.1 (P:1-139) Profilin (actin-binding protein) {Human (Homo sapiens), isoform I [TaxId: 9606]}
Probab=62.81 E-value=0.93 Score=27.19 Aligned_cols=12 Identities=25% Similarity=0.800 Sum_probs=10.7
Q ss_pred HHHHHHhhcccc
Q psy7408 23 WQSYVRALKGST 34 (66)
Q Consensus 23 WqsYvraLKGs~ 34 (66)
||+||..|-|+.
T Consensus 3 Wq~Yvd~L~~~g 14 (139)
T d2pbdp1 3 WNAYIDNLMADG 14 (139)
T ss_dssp SHHHHHHHHTTS
T ss_pred hHHHHHHhhccC
Confidence 999999998774
No 6
>d2ha2a1 c.69.1.1 (A:1-542) Acetylcholinesterase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=47.32 E-value=4.3 Score=26.37 Aligned_cols=19 Identities=16% Similarity=0.497 Sum_probs=15.3
Q ss_pred chhhHHHHHHHHHHhhccc
Q psy7408 15 PITRKAKFWQSYVRALKGS 33 (66)
Q Consensus 15 ~~skKAkFWqsYvraLKGs 33 (66)
+-..+-+||.+|+..|.+|
T Consensus 524 ~~~~~~~fW~~~~p~l~~~ 542 (542)
T d2ha2a1 524 LRAQTCAFWNRFLPKLLSA 542 (542)
T ss_dssp SSHHHHHHHHHHHHHHHCC
T ss_pred cCHHHHHHHHHHHHHHhcC
Confidence 3456678999999999875
No 7
>d1acfa_ d.110.1.1 (A:) Profilin (actin-binding protein) {Acanthamoeba castellanii [TaxId: 5755]}
Probab=47.22 E-value=3.1 Score=24.09 Aligned_cols=13 Identities=54% Similarity=1.043 Sum_probs=9.9
Q ss_pred HHHHHH-hhccccc
Q psy7408 23 WQSYVR-ALKGSTA 35 (66)
Q Consensus 23 WqsYvr-aLKGs~D 35 (66)
||+||. .|-|+.-
T Consensus 2 Wq~yvd~~L~~tg~ 15 (125)
T d1acfa_ 2 WQTYVDTNLVGTGA 15 (125)
T ss_dssp HHHHHHTTTGGGTS
T ss_pred hHHHHHHHhccccC
Confidence 999995 6777653
No 8
>d1m70a1 a.3.1.4 (A:1-92) Cytochrome c4 {Pseudomonas stutzeri [TaxId: 316]}
Probab=38.14 E-value=5.3 Score=20.12 Aligned_cols=12 Identities=33% Similarity=0.385 Sum_probs=9.3
Q ss_pred HHHHHHHhhccc
Q psy7408 22 FWQSYVRALKGS 33 (66)
Q Consensus 22 FWqsYvraLKGs 33 (66)
-=-.||++||++
T Consensus 80 dl~aYi~sl~~~ 91 (92)
T d1m70a1 80 DIAAYFSSQKGS 91 (92)
T ss_dssp HHHHHHHHSCCC
T ss_pred HHHHHHHHCCCC
Confidence 345799999986
No 9
>d1s2xa_ a.47.3.1 (A:) Cag-Z {Helicobacter pylori [TaxId: 210]}
Probab=30.10 E-value=10 Score=24.92 Aligned_cols=17 Identities=41% Similarity=0.645 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhhccccc
Q psy7408 19 KAKFWQSYVRALKGSTA 35 (66)
Q Consensus 19 KAkFWqsYvraLKGs~D 35 (66)
..||-|+|..+||.|.|
T Consensus 29 rdkfiqnyatslkdsnd 45 (180)
T d1s2xa_ 29 RDKFIQNYATSLKDSND 45 (180)
T ss_dssp HHHHHHHHTGGGGGCCS
T ss_pred HHHHHHHHHhhcccCCC
Confidence 45899999999999977
No 10
>d1j34c_ g.32.1.1 (C:) Coagulation factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.10 E-value=11 Score=20.21 Aligned_cols=13 Identities=31% Similarity=0.951 Sum_probs=9.5
Q ss_pred chhhHHHHHHHHH
Q psy7408 15 PITRKAKFWQSYV 27 (66)
Q Consensus 15 ~~skKAkFWqsYv 27 (66)
+..+-..||..||
T Consensus 34 ~~~~T~~FW~~Yv 46 (46)
T d1j34c_ 34 NTEKTTEFWKQYV 46 (46)
T ss_dssp CHHHHHHHHHHHC
T ss_pred ChHHHHHHHHHhC
Confidence 4455668999996
No 11
>d3nula_ d.110.1.1 (A:) Profilin (actin-binding protein) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=24.14 E-value=13 Score=21.57 Aligned_cols=7 Identities=71% Similarity=1.412 Sum_probs=6.1
Q ss_pred HHHHHHh
Q psy7408 23 WQSYVRA 29 (66)
Q Consensus 23 WqsYvra 29 (66)
||+||..
T Consensus 2 Wq~Yvd~ 8 (130)
T d3nula_ 2 WQSYVDD 8 (130)
T ss_dssp HHHHHHH
T ss_pred hHHHHhh
Confidence 9999974
No 12
>d1gtma2 c.58.1.1 (A:3-180) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=23.76 E-value=29 Score=21.92 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=19.2
Q ss_pred hhHHHHHHHHHHhhc---c-ccccccCCC
Q psy7408 17 TRKAKFWQSYVRALK---G-STAILLDKN 41 (66)
Q Consensus 17 skKAkFWqsYvraLK---G-s~DirA~e~ 41 (66)
...-++.++|+++|. | ..||-|+|-
T Consensus 115 ~eler~~r~f~~~l~~~iG~~~dipApDv 143 (178)
T d1gtma2 115 REKERLARGYIRAIYDVISPYEDIPAPDV 143 (178)
T ss_dssp HHHHHHHHHHHHHHGGGCBTTTEECCBCT
T ss_pred HHHHHHHHHHHHHHHhccCCCceeccccC
Confidence 445689999999996 3 358988873
No 13
>d1x3aa1 a.240.1.1 (A:8-94) Synapse associated protein 1, SYAP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.92 E-value=15 Score=20.78 Aligned_cols=11 Identities=27% Similarity=0.866 Sum_probs=8.0
Q ss_pred HHHHHHHHHHh
Q psy7408 19 KAKFWQSYVRA 29 (66)
Q Consensus 19 KAkFWqsYvra 29 (66)
-..||+.|.-.
T Consensus 66 e~~FW~rYF~~ 76 (87)
T d1x3aa1 66 EEVFWRNYFYR 76 (87)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 36799999543
No 14
>d1hm6a_ a.65.1.1 (A:) Annexin I {Pig (Sus scrofa) [TaxId: 9823]}
Probab=21.80 E-value=32 Score=22.68 Aligned_cols=35 Identities=31% Similarity=0.537 Sum_probs=23.0
Q ss_pred HHHHHhhccccccccCCCCCCCCCc-cCCchhHHHHHHH
Q psy7408 24 QSYVRALKGSTAILLDKNQPIKPVA-EHPSKHMQDWHKA 61 (66)
Q Consensus 24 qsYvraLKGs~DirA~e~~~i~~~~-~hps~~~~~~~~~ 61 (66)
|+|+.+++|+ .....+.|+|.. .+|+.--+.-+||
T Consensus 18 ~~~~~~~~~~---~~~~~~tv~p~~~fd~~~Da~~L~kA 53 (343)
T d1hm6a_ 18 QEYIKTVKGS---KGGPGSAVSPYPTFNPSSDVEALHKA 53 (343)
T ss_dssp HHHHHHHHHS---TTCSSCSCCCCSSCCHHHHHHHHHHH
T ss_pred ccccccCCCc---CCCCCCCCCCCCCCChHHHHHHHHHH
Confidence 8999999998 344445666643 3566655555555
Done!