BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7411
(474 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 59/103 (57%), Gaps = 1/103 (0%)
Query: 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYI 408
I+ G+ KIY G ++V ++ + + ++ LLG +G+GK+T + ++ GL PT G +I
Sbjct: 15 IEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWI 74
Query: 409 DGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAKGKE 451
G + ++ + ++GL Q LF+ +TV D++ F + K
Sbjct: 75 GGKRV-TDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKR 116
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 32/50 (64%)
Query: 292 LTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSK 341
+ KIY G ++V ++ + + ++ LLG +G+GK+T + ++ G +R +K
Sbjct: 20 VEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTK 69
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 44 IAGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQF 94
IAGL PT G +I G + ++ + ++GL Q LF+ +TV D++ F
Sbjct: 61 IAGLERPTKGDVWIGGKRV-TDLPPQKRNVGLVFQNYALFQHMTVYDNVSF 110
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 364 AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKV--R 421
A+ + L + + QI L+G NGAGK+TT+S + GL+ G +G DI + V R
Sbjct: 21 AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINR 80
Query: 422 ESLGLCPQYDLLFEELTVEDHL 443
+ L P+ +F ELTV ++L
Sbjct: 81 XGIALVPEGRRIFPELTVYENL 102
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 302 AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKR--KSKDIVNASGI 349
A+ + L + + QI L+G NGAGK+TT+S + G R K K I N I
Sbjct: 21 AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDI 70
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 60/110 (54%), Gaps = 11/110 (10%)
Query: 342 DIVNASGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIP 401
++VN S I RG KKA++N++L + + + ++ G+ G+GKST + ++ GLI P
Sbjct: 4 EVVNVSHIFHRGTP----LEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEP 59
Query: 402 TSGTAYIDG-HDIWYEMGKVRESLGLCPQY--DLLFEELTVEDHLQFFAK 448
TSG DG YE +R ++G+ QY D F E V D + F K
Sbjct: 60 TSGDVLYDGERKKGYE---IRRNIGIAFQYPEDQFFAE-RVFDEVAFAVK 105
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 26/36 (72%)
Query: 300 KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
KKA++N++L + + + ++ G+ G+GKST + ++ G
Sbjct: 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAG 55
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 60/110 (54%), Gaps = 11/110 (10%)
Query: 342 DIVNASGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIP 401
++VN S I RG KKA++N++L + + + ++ G+ G+GKST + ++ GLI P
Sbjct: 6 EVVNVSHIFHRGTP----LEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEP 61
Query: 402 TSGTAYIDG-HDIWYEMGKVRESLGLCPQY--DLLFEELTVEDHLQFFAK 448
TSG DG YE +R ++G+ QY D F E V D + F K
Sbjct: 62 TSGDVLYDGERKKGYE---IRRNIGIAFQYPEDQFFAE-RVFDEVAFAVK 107
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 26/36 (72%)
Query: 300 KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
KKA++N++L + + + ++ G+ G+GKST + ++ G
Sbjct: 22 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAG 57
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 59/111 (53%), Gaps = 2/111 (1%)
Query: 342 DIVNASGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIP 401
+++ ++L LTK + AV+ L L + + VLLG +G GK+TT+ M+ GL P
Sbjct: 5 EVIKMVEVKLENLTKRFGNFT-AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEP 63
Query: 402 TSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAKGKEF 452
T G Y D+ Y K R ++ + Q ++ +TV +++ F K K+F
Sbjct: 64 TEGRIYFGDRDVTYLPPKDR-NISMVFQSYAVWPHMTVYENIAFPLKIKKF 113
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 302 AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSK 341
AV+ L L + + VLLG +G GK+TT+ M+ G + ++
Sbjct: 26 AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTE 65
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 59/111 (53%), Gaps = 2/111 (1%)
Query: 342 DIVNASGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIP 401
+++ ++L LTK + AV+ L L + + VLLG +G GK+TT+ M+ GL P
Sbjct: 6 EVIKMVEVKLENLTKRFGNFT-AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEP 64
Query: 402 TSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAKGKEF 452
T G Y D+ Y K R ++ + Q ++ +TV +++ F K K+F
Sbjct: 65 TEGRIYFGDRDVTYLPPKDR-NISMVFQSYAVWPHMTVYENIAFPLKIKKF 114
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 302 AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSK 341
AV+ L L + + VLLG +G GK+TT+ M+ G + ++
Sbjct: 27 AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTE 66
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Query: 359 KTGKKAV-DNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEM 417
+ GKK + ++ ++ + +I L+G NGAGK+TT+ +++ LI P+SG + G ++ E
Sbjct: 24 RIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEP 83
Query: 418 GKVRESLGLCPQYDLLFEELTVEDHLQFFA 447
+VR+ + P+ + + ++L+F A
Sbjct: 84 HEVRKLISYLPEEAGAYRNMQGIEYLRFVA 113
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 297 KTGKKAV-DNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSKDIVNASG 348
+ GKK + ++ ++ + +I L+G NGAGK+TT+ +++ + S IV G
Sbjct: 24 RIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFG 76
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 54/98 (55%), Gaps = 7/98 (7%)
Query: 349 IQLRGLTKIYKTGKK---AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGT 405
I+L +TK++ G + A++N++L + QI ++G +GAGKST + + L PT G+
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 406 AYIDGHDI----WYEMGKVRESLGLCPQYDLLFEELTV 439
+DG ++ E+ K R +G+ Q+ L TV
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTV 99
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 40/68 (58%), Gaps = 3/68 (4%)
Query: 292 LTKIYKTGKK---AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSKDIVNASG 348
+TK++ G + A++N++L + QI ++G +GAGKST + + +R ++ V G
Sbjct: 7 ITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDG 66
Query: 349 IQLRGLTK 356
+L L++
Sbjct: 67 QELTTLSE 74
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 54/98 (55%), Gaps = 7/98 (7%)
Query: 349 IQLRGLTKIYKTGKK---AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGT 405
I+L +TK++ G + A++N++L + QI ++G +GAGKST + + L PT G+
Sbjct: 25 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 84
Query: 406 AYIDGHDI----WYEMGKVRESLGLCPQYDLLFEELTV 439
+DG ++ E+ K R +G+ Q+ L TV
Sbjct: 85 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTV 122
Score = 32.3 bits (72), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 40/68 (58%), Gaps = 3/68 (4%)
Query: 292 LTKIYKTGKK---AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSKDIVNASG 348
+TK++ G + A++N++L + QI ++G +GAGKST + + +R ++ V G
Sbjct: 30 ITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDG 89
Query: 349 IQLRGLTK 356
+L L++
Sbjct: 90 QELTTLSE 97
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 3/70 (4%)
Query: 367 NLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKV--RESL 424
+ +L + +T L+G +G+GKST +S+L L P SGT +DGHDI ++ V R +
Sbjct: 393 DFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDI-RQLNPVWLRSKI 451
Query: 425 GLCPQYDLLF 434
G Q +LF
Sbjct: 452 GTVSQEPILF 461
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 30/58 (51%)
Query: 305 NLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSKDIVNASGIQLRGLTKIYKTGK 362
+ +L + +T L+G +G+GKST +S+L + ++ G +R L ++ K
Sbjct: 393 DFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSK 450
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 56/108 (51%), Gaps = 8/108 (7%)
Query: 363 KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDG---HDI---WYE 416
KAVD ++ ++ + LLG +G GK+TT+ ML G+ PTSG Y D +DI + E
Sbjct: 17 KAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYRE 76
Query: 417 MGKVRESLGLCPQYDLLFEELTVEDHLQFFAKGK-EFNGITYGRALLL 463
+G V ++ L P +FE + + +K + E + R LL+
Sbjct: 77 VGMVFQNYALYPHM-TVFENIAFPLRARRISKDEVEKRVVEIARKLLI 123
Score = 35.8 bits (81), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 301 KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG-YKRKSKDI 343
KAVD ++ ++ + LLG +G GK+TT+ ML G YK S +I
Sbjct: 17 KAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEI 60
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 3/70 (4%)
Query: 367 NLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKV--RESL 424
+ +L + +T L+G +G+GKST +S+L L P SGT +DGHDI ++ V R +
Sbjct: 362 DFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIR-QLNPVWLRSKI 420
Query: 425 GLCPQYDLLF 434
G Q +LF
Sbjct: 421 GTVSQEPILF 430
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 30/58 (51%)
Query: 305 NLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSKDIVNASGIQLRGLTKIYKTGK 362
+ +L + +T L+G +G+GKST +S+L + ++ G +R L ++ K
Sbjct: 362 DFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSK 419
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 358 YKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYE- 416
Y G A+ + +++ + ++T +LG NG GKST G++ P+SG D I Y
Sbjct: 17 YSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSR 76
Query: 417 --MGKVRESLGLCPQ 429
+ K+RES+G+ Q
Sbjct: 77 KGIMKLRESIGIVFQ 91
Score = 32.0 bits (71), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 296 YKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKS 340
Y G A+ + +++ + ++T +LG NG GKST G + S
Sbjct: 17 YSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS 61
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 53/98 (54%), Gaps = 7/98 (7%)
Query: 349 IQLRGLTKIYKTGKK---AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGT 405
I+L +TK++ G + A++N++L + QI ++G +GAGKST + + L PT G+
Sbjct: 25 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 84
Query: 406 AYIDGHDI----WYEMGKVRESLGLCPQYDLLFEELTV 439
+DG ++ E+ K R +G Q+ L TV
Sbjct: 85 VLVDGQELTTLSESELTKARRQIGXIFQHFNLLSSRTV 122
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 40/68 (58%), Gaps = 3/68 (4%)
Query: 292 LTKIYKTGKK---AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSKDIVNASG 348
+TK++ G + A++N++L + QI ++G +GAGKST + + +R ++ V G
Sbjct: 30 ITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDG 89
Query: 349 IQLRGLTK 356
+L L++
Sbjct: 90 QELTTLSE 97
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Query: 358 YKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDI-WYE 416
Y G++ + +++ + Q L+G +GAGKST + +L +SG IDG DI
Sbjct: 63 YADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVT 122
Query: 417 MGKVRESLGLCPQYDLLFEELTVEDHLQF 445
+R +G+ PQ +LF + T+ D++++
Sbjct: 123 QASLRSHIGVVPQDTVLFND-TIADNIRY 150
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 296 YKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSML 333
Y G++ + +++ + Q L+G +GAGKST + +L
Sbjct: 63 YADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLL 100
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 3/115 (2%)
Query: 349 IQLRGLTKIYKTGKKAV-DNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAY 407
I R + YK + DN+ L + Q ++ ++G +G+GKST ++ IP +G
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 408 IDGHDIWYEMGK-VRESLGLCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRAL 461
IDGHD+ +R +G+ Q ++L ++ D++ G + Y L
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNVLLNR-SIIDNISLANPGMSVEKVIYAAKL 115
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 22/34 (64%)
Query: 303 VDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGY 336
+DN+ L + Q ++ ++G +G+GKST ++ +
Sbjct: 19 LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRF 52
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 3/115 (2%)
Query: 349 IQLRGLTKIYKTGKKAV-DNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAY 407
I R + YK + DN+ L + Q ++ ++G +G+GKST ++ IP +G
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 408 IDGHDIWYEMGK-VRESLGLCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRAL 461
IDGHD+ +R +G+ Q ++L ++ D++ G + Y L
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQDNVLLNR-SIIDNISLANPGMSVEKVIYAAKL 121
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 22/34 (64%)
Query: 303 VDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGY 336
+DN+ L + Q ++ ++G +G+GKST ++ +
Sbjct: 25 LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRF 58
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 59/104 (56%), Gaps = 3/104 (2%)
Query: 349 IQLRGLTKIYKTGKK-AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAY 407
+ ++ +T Y+ +K A+ +++ + Q + L+G +G+GKST ++ T SG+
Sbjct: 342 VDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSIC 401
Query: 408 IDGHDIW-YEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAKGK 450
+DGHD+ Y++ +R L Q LF + T+ +++ + A+G+
Sbjct: 402 LDGHDVRDYKLTNLRRHFALVSQNVHLFND-TIANNIAYAAEGE 444
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 3/115 (2%)
Query: 349 IQLRGLTKIYKTGKKAV-DNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAY 407
I R + YK + DN+ L + Q ++ ++G +G+GKST ++ IP +G
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 408 IDGHDIWYEMGK-VRESLGLCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRAL 461
IDGHD+ +R +G+ Q ++L ++ D++ G + Y L
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQDNVLLNR-SIIDNISLANPGMSVEKVIYAAKL 121
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 3/115 (2%)
Query: 349 IQLRGLTKIYKTGKKAV-DNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAY 407
I R + YK + DN+ L + Q ++ ++G +G+GKST ++ IP +G
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 408 IDGHDIWYEMGK-VRESLGLCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRAL 461
IDGHD+ +R +G+ Q ++L ++ D++ G + Y L
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNVLLNR-SIIDNISLANPGMSVEKVIYAAKL 115
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 3/115 (2%)
Query: 349 IQLRGLTKIYKTGKKAV-DNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAY 407
I R + YK + DN+ L + Q ++ ++G +G+GKST ++ IP +G
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 408 IDGHDIWYEMGK-VRESLGLCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRAL 461
IDGHD+ +R +G+ Q ++L ++ D++ G + Y L
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQDNVLLNR-SIIDNISLANPGMSVEKVIYAAKL 121
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 3/115 (2%)
Query: 349 IQLRGLTKIYKTGKKAV-DNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAY 407
I R + YK + DN+ L + Q ++ ++G +G+GKST ++ IP +G
Sbjct: 4 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 63
Query: 408 IDGHDIWYEMGK-VRESLGLCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRAL 461
IDGHD+ +R +G+ Q ++L ++ D++ G + Y L
Sbjct: 64 IDGHDLALADPNWLRRQVGVVLQDNVLLNR-SIIDNISLANPGMSVEKVIYAAKL 117
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 42/64 (65%), Gaps = 3/64 (4%)
Query: 349 IQLRGLTKIYKTGKK---AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGT 405
I+L+ +TK YK G++ A+ N+ L++ + + ++G +G+GKST ++++ L PT G
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 406 AYID 409
YID
Sbjct: 62 VYID 65
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 31/45 (68%), Gaps = 3/45 (6%)
Query: 292 LTKIYKTGKK---AVDNLTLDMYQNQITVLLGHNGAGKSTTMSML 333
+TK YK G++ A+ N+ L++ + + ++G +G+GKST ++++
Sbjct: 7 VTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNII 51
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 42/62 (67%), Gaps = 1/62 (1%)
Query: 349 IQLRGLTKIYKTGKK-AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAY 407
I ++ ++K++K GK A+DN+ +++ + +LG +GAGK+T M ++ GL +P++G Y
Sbjct: 4 IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELY 63
Query: 408 ID 409
D
Sbjct: 64 FD 65
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 292 LTKIYKTGKK-AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
++K++K GK A+DN+ +++ + +LG +GAGK+T M ++ G
Sbjct: 9 VSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAG 53
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 42/62 (67%), Gaps = 1/62 (1%)
Query: 349 IQLRGLTKIYKTGKK-AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAY 407
I ++ ++K++K GK A+DN+ +++ + +LG +GAGK+T M ++ GL +P++G Y
Sbjct: 4 IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELY 63
Query: 408 ID 409
D
Sbjct: 64 FD 65
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 292 LTKIYKTGKK-AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
++K++K GK A+DN+ +++ + +LG +GAGK+T M ++ G
Sbjct: 9 VSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAG 53
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 41/64 (64%), Gaps = 3/64 (4%)
Query: 349 IQLRGLTKIYKTGKK---AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGT 405
I+L+ +TK YK G++ A+ N+ L++ + + + G +G+GKST ++++ L PT G
Sbjct: 2 IKLKNVTKTYKXGEEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGE 61
Query: 406 AYID 409
YID
Sbjct: 62 VYID 65
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 30/45 (66%), Gaps = 3/45 (6%)
Query: 292 LTKIYKTGKK---AVDNLTLDMYQNQITVLLGHNGAGKSTTMSML 333
+TK YK G++ A+ N+ L++ + + + G +G+GKST ++++
Sbjct: 7 VTKTYKXGEEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNII 51
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 42/65 (64%), Gaps = 3/65 (4%)
Query: 349 IQLRGLTKIYKTGKK---AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGT 405
++L+ +TK YK G++ A+ N+ L++ + + ++G +G+GKST ++++ L PT G
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 406 AYIDG 410
YID
Sbjct: 62 VYIDN 66
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 31/45 (68%), Gaps = 3/45 (6%)
Query: 292 LTKIYKTGKK---AVDNLTLDMYQNQITVLLGHNGAGKSTTMSML 333
+TK YK G++ A+ N+ L++ + + ++G +G+GKST ++++
Sbjct: 7 VTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNII 51
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 3/115 (2%)
Query: 349 IQLRGLTKIYKTGKKAV-DNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAY 407
I R + YK + DN+ L + Q ++ ++G G+GKST ++ IP +G
Sbjct: 4 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQVL 63
Query: 408 IDGHDIWYEMGK-VRESLGLCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRAL 461
IDGHD+ +R +G+ Q ++L ++ D++ G + Y L
Sbjct: 64 IDGHDLALADPNWLRRQVGVVLQDNVLLNR-SIIDNISLANPGMSVEKVIYAAKL 117
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 56/105 (53%), Gaps = 3/105 (2%)
Query: 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYI 408
I++ L++ +K ++DNL+L + + V+LG GAGK+ + ++ G +P SG +
Sbjct: 2 IEIESLSRKWKNF--SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILL 59
Query: 409 DGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAKGKEFN 453
DG D+ ++ + + Q LF + V+ +L+F + K+
Sbjct: 60 DGKDVT-DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIK 103
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 23/35 (65%)
Query: 302 AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGY 336
++DNL+L + + V+LG GAGK+ + ++ G+
Sbjct: 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGF 49
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 364 AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRES 423
A++N+ L + + LLG +G+GKST + + G+ PTSG Y D D+ E+ +
Sbjct: 18 ALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVT-ELPPKDRN 76
Query: 424 LGLCPQYDLLFEELTVEDHLQF 445
+GL Q L+ +TV ++ F
Sbjct: 77 VGLVFQNWALYPHMTVYKNIAF 98
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 302 AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG-YKRKSKDI 343
A++N+ L + + LLG +G+GKST + + G YK S I
Sbjct: 18 ALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKI 60
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 44 IAGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAKWR 99
IAG+ PTSG Y D D+ E+ ++GL Q L+ +TV ++ F + R
Sbjct: 49 IAGIYKPTSGKIYFDEKDVT-ELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELR 103
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 368 LTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIW-YEMGKVRESLGL 426
L L + Q L+G++G GKSTT+ ++ L P G IDG DI + +RE +G+
Sbjct: 409 LNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGV 468
Query: 427 CPQYDLLFEELTVED 441
Q +LF E+
Sbjct: 469 VSQEPVLFATTIAEN 483
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 368 LTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDI-WYEMGKVRESLGL 426
L+L++ + Q L+G +G GKST + +L P +G+ ++DG +I + +R LG+
Sbjct: 1052 LSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGI 1111
Query: 427 CPQYDLLFE 435
Q +LF+
Sbjct: 1112 VSQEPILFD 1120
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 368 LTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIW-YEMGKVRESLGL 426
L L + Q L+G++G GKSTT+ ++ L P G IDG DI + +RE +G+
Sbjct: 409 LNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGV 468
Query: 427 CPQYDLLFEELTVED 441
Q +LF E+
Sbjct: 469 VSQEPVLFATTIAEN 483
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 368 LTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDI-WYEMGKVRESLGL 426
L+L++ + Q L+G +G GKST + +L P +G+ ++DG +I + +R LG+
Sbjct: 1052 LSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGI 1111
Query: 427 CPQYDLLFE 435
Q +LF+
Sbjct: 1112 VSQEPILFD 1120
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 68/122 (55%), Gaps = 8/122 (6%)
Query: 337 KRKSKDIVN-ASG-IQLRGLTKIYKTGKK--AVDNLTLDMYQNQITVLLGHNGAGKSTTM 392
K + K +++ A+G ++ R +T Y G++ A+ N+ L + + L+G +G+GKST
Sbjct: 328 KDEGKRVIDRATGDLEFRNVTFTYP-GREVPALRNINLKIPAGKTVALVGRSGSGKSTIA 386
Query: 393 SMLTGLIIPTSGTAYIDGHDIW-YEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAKGKE 451
S++T G +DGHD+ Y + +R + L Q LF + TV +++ +A+ +E
Sbjct: 387 SLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFND-TVANNIA-YARTEE 444
Query: 452 FN 453
++
Sbjct: 445 YS 446
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 302 AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGY 336
A+ N+ L + + L+G +G+GKST S++T +
Sbjct: 358 ALRNINLKIPAGKTVALVGRSGSGKSTIASLITRF 392
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 363 KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHD-IWYEMGKVR 421
+ + LT +Y ++T L+G NG+GKST ++L L PT G +DG + Y+ +
Sbjct: 33 QVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLH 92
Query: 422 ESLGLCPQYDLLF 434
+ Q LLF
Sbjct: 93 TQVAAVGQEPLLF 105
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 301 KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSML 333
+ + LT +Y ++T L+G NG+GKST ++L
Sbjct: 33 QVLQGLTFTLYPGKVTALVGPNGSGKSTVAALL 65
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 363 KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHD-IWYEMGKVR 421
+ + LT +Y ++T L+G NG+GKST ++L L PT G +DG + Y+ +
Sbjct: 33 QVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLH 92
Query: 422 ESLGLCPQYDLLF 434
+ Q LLF
Sbjct: 93 TQVAAVGQEPLLF 105
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 301 KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSML 333
+ + LT +Y ++T L+G NG+GKST ++L
Sbjct: 33 QVLQGLTFTLYPGKVTALVGPNGSGKSTVAALL 65
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 363 KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHD-IWYEMGKVR 421
+ + LT +Y ++T L+G NG+GKST ++L L PT G +DG + Y+ +
Sbjct: 33 QVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLH 92
Query: 422 ESLGLCPQYDLLF 434
+ Q LLF
Sbjct: 93 TQVAAVGQEPLLF 105
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 301 KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSML 333
+ + LT +Y ++T L+G NG+GKST ++L
Sbjct: 33 QVLQGLTFTLYPGKVTALVGPNGSGKSTVAALL 65
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 367 NLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIW-YEMGKVRESLG 425
++ L + + + +G +G GKST ++++ TSG IDGH+I + G +R +G
Sbjct: 359 DINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIG 418
Query: 426 LCPQYDLLFEELTVEDHL 443
L Q ++LF + E+ L
Sbjct: 419 LVQQDNILFSDTVKENIL 436
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 51 TSGTAYIDGHDIW-YEMGKVRESLGLCPQYDLLFEELTVEDHL 92
TSG IDGH+I + G +R +GL Q ++LF + E+ L
Sbjct: 394 TSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENIL 436
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 9/88 (10%)
Query: 351 LRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPT----SGTA 406
LR + + + KA D ++LD+ +N +T ++G + +GKST + +T + P SG
Sbjct: 10 LRAVYLVREGTIKAADGISLDILENSVTAIVGESASGKSTIIEAMTKTLPPNGRILSGRV 69
Query: 407 YIDGHDIW----YEMGKVR-ESLGLCPQ 429
G D+ E+ K+R + + L PQ
Sbjct: 70 LYKGKDLLTMREEELRKIRWKEIALVPQ 97
Score = 35.8 bits (81), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 24/34 (70%)
Query: 301 KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLT 334
KA D ++LD+ +N +T ++G + +GKST + +T
Sbjct: 22 KAADGISLDILENSVTAIVGESASGKSTIIEAMT 55
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 55/103 (53%), Gaps = 4/103 (3%)
Query: 347 SGIQLRGLTKIYKTGKKAVD-NLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGT 405
+ +QL+ +TK + G+ V ++ LD+++ + V +G +G GKST + M+ GL TSG
Sbjct: 2 ASVQLQNVTKAW--GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGD 59
Query: 406 AYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAK 448
+I G + +G+ Q L+ L+V +++ F K
Sbjct: 60 LFI-GEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLK 101
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 22/33 (66%)
Query: 305 NLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYK 337
++ LD+++ + V +G +G GKST + M+ G +
Sbjct: 21 DINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE 53
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 55/103 (53%), Gaps = 4/103 (3%)
Query: 347 SGIQLRGLTKIYKTGKKAVD-NLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGT 405
+ +QL+ +TK + G+ V ++ LD+++ + V +G +G GKST + M+ GL TSG
Sbjct: 2 ASVQLQNVTKAW--GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGD 59
Query: 406 AYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAK 448
+I G + +G+ Q L+ L+V +++ F K
Sbjct: 60 LFI-GEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLK 101
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 22/33 (66%)
Query: 305 NLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYK 337
++ LD+++ + V +G +G GKST + M+ G +
Sbjct: 21 DINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE 53
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 55/103 (53%), Gaps = 4/103 (3%)
Query: 347 SGIQLRGLTKIYKTGKKAVD-NLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGT 405
+ +QL+ +TK + G+ V ++ LD+++ + V +G +G GKST + M+ GL TSG
Sbjct: 2 ASVQLQNVTKAW--GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGD 59
Query: 406 AYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAK 448
+I G + +G+ Q L+ L+V +++ F K
Sbjct: 60 LFI-GEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLK 101
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 22/33 (66%)
Query: 305 NLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYK 337
++ LD+++ + V +G +G GKST + M+ G +
Sbjct: 21 DINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE 53
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Query: 333 LTGYKRKSKDIVNASGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTM 392
L G K K K IV + ++ + T K + ++ + ++G NGAGKST +
Sbjct: 661 LEGVKTKQKAIVKVTNMEF----QYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLI 716
Query: 393 SMLTGLIIPTSGTAY 407
++LTG ++PTSG Y
Sbjct: 717 NVLTGELLPTSGEVY 731
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 298 TGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
T K + ++ + ++G NGAGKST +++LTG
Sbjct: 684 TSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTG 721
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 379 VLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELT 438
VLLG GAGKS + ++ G++ P G ++G DI + R +G PQ LF L+
Sbjct: 28 VLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADIT-PLPPERRGIGFVPQDYALFPHLS 86
Query: 439 V 439
V
Sbjct: 87 V 87
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 31/48 (64%)
Query: 364 AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGH 411
AV +L+L++ + VLLG +G GK+TT+ + GL PT G YI+ +
Sbjct: 21 AVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDN 68
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 26/40 (65%)
Query: 302 AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSK 341
AV +L+L++ + VLLG +G GK+TT+ + G + ++
Sbjct: 21 AVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTR 60
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 34/51 (66%)
Query: 363 KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDI 413
KA+D +++ + + +T+++G NG+GKST ++++TG + G Y + DI
Sbjct: 21 KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDI 71
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 80/172 (46%), Gaps = 33/172 (19%)
Query: 301 KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKR--------KSKDIVNASGIQL- 351
KA+D +++ + + +T+++G NG+GKST ++++TG+ + ++KDI N +L
Sbjct: 21 KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELY 80
Query: 352 -RGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDG 410
G+ + ++T + + L+ +L+G G+S S+ IP
Sbjct: 81 HYGIVRTFQTPQPLKEMTVLE------NLLIGEICPGESPLNSLFYKKWIPKE------- 127
Query: 411 HDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALL 462
++ + K+ E L L YD EL+ G + + GRAL+
Sbjct: 128 EEMVEKAFKILEFLKLSHLYDRKAGELS----------GGQMKLVEIGRALM 169
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 56/107 (52%), Gaps = 6/107 (5%)
Query: 343 IVNASG-IQLRGLTKIYKTGKK--AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLI 399
I A+G ++ R +T Y G+ A+ N+ L + + L+G +G+GKST S++T
Sbjct: 335 IERATGDVEFRNVTFTYP-GRDVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFY 393
Query: 400 IPTSGTAYIDGHDIW-YEMGKVRESLGLCPQYDLLFEELTVEDHLQF 445
G +DGHD+ Y + +R + L Q LF + TV +++ +
Sbjct: 394 DIDEGEILMDGHDLREYTLASLRNQVALVSQNVHLFND-TVANNIAY 439
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 302 AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGY 336
A+ N+ L + + L+G +G+GKST S++T +
Sbjct: 358 ALRNINLKIPAGKTVALVGRSGSGKSTIASLITRF 392
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 333 LTGYKRKSKDIVNASGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTM 392
L G K K K IV + + + T K + ++ + ++G NGAGKST +
Sbjct: 655 LEGVKTKQKAIVKVTNXEF----QYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLI 710
Query: 393 SMLTGLIIPTSGTAY 407
++LTG ++PTSG Y
Sbjct: 711 NVLTGELLPTSGEVY 725
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 298 TGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
T K + ++ + ++G NGAGKST +++LTG
Sbjct: 678 TSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTG 715
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 34/51 (66%)
Query: 363 KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDI 413
KA+D +++ + + +T+++G NG+GKST ++++TG + G Y + DI
Sbjct: 21 KALDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDI 71
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 80/172 (46%), Gaps = 33/172 (19%)
Query: 301 KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKR--------KSKDIVNASGIQL- 351
KA+D +++ + + +T+++G NG+GKST ++++TG+ + ++KDI N +L
Sbjct: 21 KALDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELY 80
Query: 352 -RGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDG 410
G+ + ++T + + L+ +L+G G+S S+ IP
Sbjct: 81 HYGIVRTFQTPQPLKEMTVLE------NLLIGEINPGESPLNSLFYKKWIPKE------- 127
Query: 411 HDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALL 462
++ + K+ E L L YD EL+ G + + GRAL+
Sbjct: 128 EEMVEKAFKILEFLKLSHLYDRKAGELS----------GGQMKLVEIGRALM 169
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 34/51 (66%)
Query: 363 KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDI 413
KA+D +++ + + +T+++G NG+GKST ++++TG + G Y + DI
Sbjct: 21 KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDI 71
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 80/172 (46%), Gaps = 33/172 (19%)
Query: 301 KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKR--------KSKDIVNASGIQL- 351
KA+D +++ + + +T+++G NG+GKST ++++TG+ + ++KDI N +L
Sbjct: 21 KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELY 80
Query: 352 -RGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDG 410
G+ + ++T + + L+ +L+G G+S S+ IP
Sbjct: 81 HYGIVRTFQTPQPLKEMTVLE------NLLIGEINPGESPLNSLFYKKWIPKE------- 127
Query: 411 HDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALL 462
++ + K+ E L L YD EL+ G + + GRAL+
Sbjct: 128 EEMVEKAFKILEFLKLSHLYDRKAGELS----------GGQMKLVEIGRALM 169
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 333 LTGYKRKSKDIVNASGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTM 392
L G K K K IV + + + T K + ++ + ++G NGAGKST +
Sbjct: 661 LEGVKTKQKAIVKVTNXEF----QYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLI 716
Query: 393 SMLTGLIIPTSGTAY 407
++LTG ++PTSG Y
Sbjct: 717 NVLTGELLPTSGEVY 731
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 298 TGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
T K + ++ + ++G NGAGKST +++LTG
Sbjct: 684 TSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTG 721
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 22/103 (21%)
Query: 365 VDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESL 424
+ LT + ++T L+G NG+GKST ++L L PT G +DG +
Sbjct: 33 LQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPL----------- 81
Query: 425 GLCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSY 467
PQY+ + H Q A G+E +GR+L ++Y
Sbjct: 82 ---PQYEHRYL------HRQVAAVGQEPQ--VFGRSLQENIAY 113
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 303 VDNLTLDMYQNQITVLLGHNGAGKSTTMSML 333
+ LT + ++T L+G NG+GKST ++L
Sbjct: 33 LQGLTFTLRPGEVTALVGPNGSGKSTVAALL 63
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 29/45 (64%)
Query: 364 AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYI 408
AV ++L++ + +LLG +G GK+TT+ M+ GL P+ G YI
Sbjct: 18 AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYI 62
Score = 35.4 bits (80), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 26/40 (65%)
Query: 302 AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSK 341
AV ++L++ + +LLG +G GK+TT+ M+ G + S+
Sbjct: 18 AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSR 57
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 358 YKTGKKA-VDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDI 413
Y ++A +++++L + ++ ++G NGAGKST + +LTG + P+ G ++ G ++
Sbjct: 19 YHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNL 75
Score = 35.0 bits (79), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 296 YKTGKKA-VDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGY 336
Y ++A +++++L + ++ ++G NGAGKST + +LTGY
Sbjct: 19 YHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGY 60
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 50/92 (54%), Gaps = 11/92 (11%)
Query: 364 AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRES 423
+++N+ L++ ++ ++LG NG+GK+T + ++GL +P SG +I+G ++ +R S
Sbjct: 20 SLENINLEVNGEKV-IILGPNGSGKTTLLRAISGL-LPYSGNIFINGMEVRKIRNYIRYS 77
Query: 424 LGLCPQYDL---------LFEELTVEDHLQFF 446
L Y++ L+EEL D F
Sbjct: 78 TNLPEAYEIGVTVNDIVYLYEELKGLDRDLFL 109
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 377 ITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIW-YEMGKVRESLGLCPQYDLLFE 435
+ +LG G+GKST M+++ LI P G +D D+ ++ +R + PQ +LF
Sbjct: 371 LVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFS 430
Query: 436 ELTVEDHLQ 444
T++++L+
Sbjct: 431 G-TIKENLK 438
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Query: 358 YKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIW-YE 416
Y K + ++T + Q L+G G+GK+T +++L G +DG DI +
Sbjct: 364 YDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIK 423
Query: 417 MGKVRESLGLCPQYDLLFEELTVEDHLQF 445
+R S+G+ Q +LF TV+++L++
Sbjct: 424 RSSLRSSIGIVLQDTILFST-TVKENLKY 451
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/61 (22%), Positives = 30/61 (49%)
Query: 296 YKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSKDIVNASGIQLRGLT 355
Y K + ++T + Q L+G G+GK+T +++L + + + GI +R +
Sbjct: 364 YDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIK 423
Query: 356 K 356
+
Sbjct: 424 R 424
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 361 GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY----E 416
G + + ++L + + + ++G +G+GKST + +L L PT G +++G ++ Y E
Sbjct: 16 GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKE 75
Query: 417 MGKVR-ESLGLCPQYDLLFEELT 438
+ +R LG Q+ L ELT
Sbjct: 76 LSLLRNRKLGFVFQFHYLIPELT 98
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 6/108 (5%)
Query: 331 SMLTGYKRKSKDIVNASG-IQLRGLTKIYKTGKKAV-DNLTLDMYQNQITVLLGHNGAGK 388
S++ K DI + G + ++ LT Y G A+ +N++ + Q LLG G+GK
Sbjct: 1 SLIENSHVKKDDIWPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGK 60
Query: 389 STTMSMLTGLIIPTSGTAYIDGHDIW--YEMGKVRESLGLCPQYDLLF 434
ST +S L + T G IDG W + + R++ G+ PQ +F
Sbjct: 61 STLLSAFLRL-LNTEGEIQIDGVS-WDSITLEQWRKAFGVIPQKVFIF 106
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 9/66 (13%)
Query: 292 LTKIYKTGKKAV-DNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSKDIVNASG-I 349
LT Y G A+ +N++ + Q LLG G+GKST +L+ + R ++N G I
Sbjct: 25 LTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKST---LLSAFLR----LLNTEGEI 77
Query: 350 QLRGLT 355
Q+ G++
Sbjct: 78 QIDGVS 83
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 365 VDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGK--VRE 422
+++++L + +I ++G +G GK+T + L G P SG + G I+ + VRE
Sbjct: 20 LNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRE 79
Query: 423 -SLGLCPQYDLLFEELTV 439
LG Q +LF LTV
Sbjct: 80 RRLGYLVQEGVLFPHLTV 97
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 12/63 (19%)
Query: 368 LTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLC 427
L D+ + I +LG NG GKST + +L G+ P G +V +S+G
Sbjct: 24 LNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI------------EVYQSIGFV 71
Query: 428 PQY 430
PQ+
Sbjct: 72 PQF 74
Score = 31.6 bits (70), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 306 LTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKR 338
L D+ + I +LG NG GKST + +L G R
Sbjct: 24 LNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR 56
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%)
Query: 358 YKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDI 413
Y ++ + +++ + N I G +G GKST S+L PT+G IDG I
Sbjct: 11 YDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPI 66
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/82 (20%), Positives = 38/82 (46%), Gaps = 14/82 (17%)
Query: 296 YKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSKDIVNASGIQLRGLT 355
Y ++ + +++ + N I G +G GKST S+L + + + + G
Sbjct: 11 YDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDG------- 63
Query: 356 KIYKTGKKAVDNLTLDMYQNQI 377
+ +DN++L+ +++QI
Sbjct: 64 -------QPIDNISLENWRSQI 78
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 368 LTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYE---MGKVRESL 424
+ + + + ++ V++G +G+GKST + L L G IDG ++ + + KVRE +
Sbjct: 22 INVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEV 81
Query: 425 GLCPQYDLLFEELTV 439
G+ Q LF +TV
Sbjct: 82 GMVFQRFNLFPHMTV 96
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 368 LTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYE---MGKVRESL 424
+ + + + ++ V++G +G+GKST + L L G IDG ++ + + KVRE +
Sbjct: 43 INVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEV 102
Query: 425 GLCPQYDLLFEELTV 439
G+ Q LF +TV
Sbjct: 103 GMVFQRFNLFPHMTV 117
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 379 VLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDI-WYEMGKVRESLGLCPQYDLLFEE 436
L+GH G+GKST +L G I G ++ Y +R +G+ PQ +LF E
Sbjct: 50 ALVGHTGSGKSTIAKLLYRF-YDAEGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNE 107
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 51/101 (50%), Gaps = 6/101 (5%)
Query: 347 SGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTA 406
S +++R L+ Y K ++ +T+ + + + G NG GK+T + ++ + P G
Sbjct: 9 SKLEIRDLSVGY--DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 66
Query: 407 YIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFA 447
+G I KV+ + P+ ++ +++VED+L+ A
Sbjct: 67 IYNGVPIT----KVKGKIFFLPEEIIVPRKISVEDYLKAVA 103
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 7/90 (7%)
Query: 368 LTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIW-YEMGKVRESLGL 426
+ L + Q L+G +G GKST +S+L G IDG D+ + +R+++ +
Sbjct: 437 MNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAV 496
Query: 427 CPQYDLLFEELTVEDHLQFFAKGKEFNGIT 456
Q LF T+E+++ GKE GIT
Sbjct: 497 VSQEPALF-NCTIEENISL---GKE--GIT 520
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Query: 368 LTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDI-WYEMGKVRESLGL 426
L+ + Q L+G +G GKST +++L G +IDG +I R + +
Sbjct: 1098 LSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAI 1157
Query: 427 CPQYDLLFE 435
Q LF+
Sbjct: 1158 VSQEPTLFD 1166
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 306 LTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSKDIVNASGIQLRGL 354
+ L + Q L+G +G GKST +S+L Y K + G+ +R +
Sbjct: 437 MNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDI 485
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 374 QNQITVLLGHNGAGKSTTMSMLTGLIIPTSG 404
N I +LG NG GK+T + +L G IIP G
Sbjct: 24 NNTILGVLGKNGVGKTTVLKILAGEIIPNFG 54
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYI 408
I+L ++ Y G + ++ + +I V++G NG+GK+T + +L GL + +G ++
Sbjct: 12 IELNSVSFRY-NGDYVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGL-LAAAGEIFL 69
Query: 409 DG 410
DG
Sbjct: 70 DG 71
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 32.3 bits (72), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Query: 358 YKTGKKAVDNLTLDMYQ-----NQITVLLGHNGAGKSTTMSMLTGLIIPTSG 404
Y + KK + L++ + ++I V++G NG GK+T + +L G + P G
Sbjct: 356 YPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEG 407
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 376 QITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGK 419
Q+ L+G NG GKST + +L G P G D W E+ K
Sbjct: 104 QVLGLVGTNGIGKSTALKILAGKQKPNLGR--FDDPPEWQEIIK 145
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 5/45 (11%)
Query: 296 YKTGKKAVDNLTLDMYQ-----NQITVLLGHNGAGKSTTMSMLTG 335
Y + KK + L++ + ++I V++G NG GK+T + +L G
Sbjct: 356 YPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAG 400
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 32.0 bits (71), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 359 KTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGH---DIWY 415
K GK + ++ + + +L G NGAGK+T +++L TSGT + G + Y
Sbjct: 31 KQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKXPGKVGY 90
Query: 416 EMGKVRESLGLC 427
VR+ +G
Sbjct: 91 SAETVRQHIGFV 102
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 28/52 (53%)
Query: 297 KTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSKDIVNASG 348
K GK + ++ + + +L G NGAGK+T +++L Y+ + VN G
Sbjct: 31 KQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFG 82
>pdb|2YHS|A Chain A, Structure Of The E. Coli Srp Receptor Ftsy
Length = 503
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 10/79 (12%)
Query: 315 ITVLLGHNGAGKSTTMSMLT-GYKRKSKDIVNASGIQLRGLTKIYKTGKKAVDNLTLDMY 373
+ +++G NG GK+TT+ L ++++ K ++ A+G R AV+ L +
Sbjct: 295 VILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAA---------AVEQLQVWGQ 345
Query: 374 QNQITVLLGHNGAGKSTTM 392
+N I V+ H GA ++ +
Sbjct: 346 RNNIPVIAQHTGADSASVI 364
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 32.0 bits (71), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 362 KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGL--IIPTSGTAYIDGHDI 413
K + L+LD++ ++ ++G NG+GKST + L G T GT G D+
Sbjct: 33 KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDL 86
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 24/38 (63%)
Query: 300 KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYK 337
K + L+LD++ ++ ++G NG+GKST + L G +
Sbjct: 33 KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGRE 70
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 31.6 bits (70), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 362 KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGL--IIPTSGTAYIDGHDI 413
K + L+LD++ ++ ++G NG+GKST + L G T GT G D+
Sbjct: 14 KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDL 67
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 24/38 (63%)
Query: 300 KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYK 337
K + L+LD++ ++ ++G NG+GKST + L G +
Sbjct: 14 KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGRE 51
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
Query: 361 GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPT--SGTAYIDGHDIWYEMG 418
G+ + + L + + ++ L+G NGAGKST +L G T G +DG +I E+
Sbjct: 15 GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENI-LELS 73
Query: 419 ---KVRESLGLCPQYDLLFEELTVEDHLQFFAKGK 450
+ R+ L L QY + +T+ + L+ + K
Sbjct: 74 PDERARKGLFLAFQYPVEVPGVTIANFLRLALQAK 108
>pdb|1QHL|A Chain A, Crystal Structure Of The N-Terminal Domain Of Mukb At 2.2a
Resolution
Length = 227
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 377 ITVLLGHNGAGKSTTMSMLTGLIIP 401
+T L G NGAGKSTTM+ +IP
Sbjct: 29 VTTLSGGNGAGKSTTMAAFVTALIP 53
>pdb|2YV5|A Chain A, Crystal Structure Of Yjeq From Aquifex Aeolicus
Length = 302
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 287 EVGFCLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSKDI 343
+ G+ + K+ + +D L +D + I +L G +G GKS+ +S LTG + +++++
Sbjct: 140 DAGYDVLKVSAKTGEGIDEL-VDYLEGFICILAGPSGVGKSSILSRLTGEELRTQEV 195
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 359 KTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 397
KTG+ +D L +D + I +L G +G GKS+ +S LTG
Sbjct: 151 KTGE-GIDEL-VDYLEGFICILAGPSGVGKSSILSRLTG 187
>pdb|3EUJ|A Chain A, Crystal Structure Of Muke-Mukf(Residues 292-443)-Mukb(Head
Domain)- Atpgammas Complex, Symmetric Dimer
pdb|3EUK|A Chain A, Crystal Structure Of Muke-Mukf(Residues 292-443)-Mukb(Head
Domain)- Atpgammas Complex, Asymmetric Dimer
pdb|3EUK|C Chain C, Crystal Structure Of Muke-Mukf(Residues 292-443)-Mukb(Head
Domain)- Atpgammas Complex, Asymmetric Dimer
pdb|3EUK|F Chain F, Crystal Structure Of Muke-Mukf(Residues 292-443)-Mukb(Head
Domain)- Atpgammas Complex, Asymmetric Dimer
pdb|3EUK|H Chain H, Crystal Structure Of Muke-Mukf(Residues 292-443)-Mukb(Head
Domain)- Atpgammas Complex, Asymmetric Dimer
Length = 483
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 377 ITVLLGHNGAGKSTTMSMLTGLIIP 401
+T L G NGAGKSTTM+ +IP
Sbjct: 31 VTTLSGGNGAGKSTTMAGFVTALIP 55
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 371 DMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSG 404
++ + ++ ++G NG GK+T + ML G+ PT G
Sbjct: 378 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEG 411
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 371 DMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSG 404
++ + ++ ++G NG GK+T + ML G+ PT G
Sbjct: 364 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEG 397
>pdb|1YIQ|A Chain A, Molecular Cloning And Structural Analysis Of
Quinohemoprotein Alcohol Dehydrogenase Adhiig From
Pseudomonas Putida Hk5. Compariison To The Other
Quinohemoprotein Alcohol Dehydrogenase Adhiib Found In
The Same Microorganism
Length = 689
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 213 LMYEGIGEGVQWNNVWKSVTPDDELCLGHILSMMAIMG 250
L+Y G+G G W+ W+S D L L I+++ A G
Sbjct: 248 LLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTG 285
>pdb|2XXA|B Chain B, The Crystal Structure Of The Signal Recognition Particle
(Srp) In Complex With Its Receptor(Sr)
pdb|2XXA|D Chain D, The Crystal Structure Of The Signal Recognition Particle
(Srp) In Complex With Its Receptor(Sr)
Length = 302
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 10/79 (12%)
Query: 315 ITVLLGHNGAGKSTTMSMLTG-YKRKSKDIVNASGIQLRGLTKIYKTGKKAVDNLTLDMY 373
+ +++G NG GK+TT+ L ++++ K ++ A+G R AV+ L +
Sbjct: 100 VILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRA---------AAVEQLQVWGQ 150
Query: 374 QNQITVLLGHNGAGKSTTM 392
+N I V+ H GA ++ +
Sbjct: 151 RNNIPVIAQHTGADSASVI 169
>pdb|2QY9|A Chain A, Structure Of The Ng+1 Construct Of The E. Coli Srp
Receptor Ftsy
Length = 309
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 10/79 (12%)
Query: 315 ITVLLGHNGAGKSTTMSMLTG-YKRKSKDIVNASGIQLRGLTKIYKTGKKAVDNLTLDMY 373
+ +++G NG GK+TT+ L ++++ K ++ A+G R AV+ L +
Sbjct: 101 VILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRA---------AAVEQLQVWGQ 151
Query: 374 QNQITVLLGHNGAGKSTTM 392
+N I V+ H GA ++ +
Sbjct: 152 RNNIPVIAQHTGADSASVI 170
>pdb|1FTS|A Chain A, Signal Recognition Particle Receptor From E. Coli
Length = 295
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 10/79 (12%)
Query: 315 ITVLLGHNGAGKSTTMSMLTG-YKRKSKDIVNASGIQLRGLTKIYKTGKKAVDNLTLDMY 373
+ +++G NG GK+TT+ L ++++ K ++ A+G R AV+ L +
Sbjct: 95 VILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRA---------AAVEQLQVWGQ 145
Query: 374 QNQITVLLGHNGAGKSTTM 392
+N I V+ H GA ++ +
Sbjct: 146 RNNIPVIAQHTGADSASVI 164
>pdb|1E69|A Chain A, Smc Head Domain From Thermotoga Maritima
pdb|1E69|B Chain B, Smc Head Domain From Thermotoga Maritima
pdb|1E69|C Chain C, Smc Head Domain From Thermotoga Maritima
pdb|1E69|D Chain D, Smc Head Domain From Thermotoga Maritima
pdb|1E69|E Chain E, Smc Head Domain From Thermotoga Maritima
pdb|1E69|F Chain F, Smc Head Domain From Thermotoga Maritima
Length = 322
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 25/42 (59%)
Query: 292 LTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSML 333
L K+Y G K+ +L + +++T ++G NG+GKS + +
Sbjct: 3 LKKLYLKGFKSFGRPSLIGFSDRVTAIVGPNGSGKSNIIDAI 44
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 25/42 (59%)
Query: 354 LTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSML 395
L K+Y G K+ +L + +++T ++G NG+GKS + +
Sbjct: 3 LKKLYLKGFKSFGRPSLIGFSDRVTAIVGPNGSGKSNIIDAI 44
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 380 LLGHNGAGKSTTMSMLTGLIIPT 402
++G NG GKST + +L G +IP
Sbjct: 52 IVGPNGTGKSTAVKILAGQLIPN 74
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,596,919
Number of Sequences: 62578
Number of extensions: 626355
Number of successful extensions: 1856
Number of sequences better than 100.0: 93
Number of HSP's better than 100.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1627
Number of HSP's gapped (non-prelim): 235
length of query: 474
length of database: 14,973,337
effective HSP length: 102
effective length of query: 372
effective length of database: 8,590,381
effective search space: 3195621732
effective search space used: 3195621732
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)