Query psy7411
Match_columns 474
No_of_seqs 394 out of 3322
Neff 5.9
Searched_HMMs 46136
Date Fri Aug 16 17:38:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7411.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7411hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01257 rim_protein retinal- 100.0 2.7E-56 5.8E-61 530.8 27.0 374 70-468 652-1049(2272)
2 TIGR01257 rim_protein retinal- 99.9 2.9E-25 6.3E-30 266.4 25.5 271 145-467 1769-2057(2272)
3 COG3842 PotA ABC-type spermidi 99.9 2.1E-25 4.6E-30 228.8 13.7 120 347-468 4-124 (352)
4 COG1125 OpuBA ABC-type proline 99.9 3.2E-25 7E-30 216.2 11.5 120 348-468 1-121 (309)
5 COG3839 MalK ABC-type sugar tr 99.9 1.2E-24 2.5E-29 222.3 13.9 120 348-469 3-122 (338)
6 COG4555 NatA ABC-type Na+ tran 99.9 2.3E-25 5E-30 210.9 7.9 121 348-468 1-121 (245)
7 COG1126 GlnQ ABC-type polar am 99.9 1.8E-24 3.9E-29 206.9 13.3 120 348-468 2-124 (240)
8 COG1131 CcmA ABC-type multidru 99.9 4.6E-24 9.9E-29 215.3 14.4 120 348-467 4-123 (293)
9 COG4152 ABC-type uncharacteriz 99.9 4.3E-24 9.4E-29 207.3 10.4 117 348-468 2-118 (300)
10 PRK13537 nodulation ABC transp 99.9 4.3E-23 9.4E-28 209.2 16.1 120 347-467 6-125 (306)
11 COG1135 AbcC ABC-type metal io 99.9 1.9E-23 4.2E-28 208.6 12.7 121 348-468 1-129 (339)
12 KOG0059|consensus 99.9 1.6E-23 3.4E-28 238.9 12.8 121 347-467 563-685 (885)
13 COG2884 FtsE Predicted ATPase 99.9 3.5E-23 7.6E-28 194.6 8.9 121 348-468 1-125 (223)
14 PRK13536 nodulation factor exp 99.9 3.3E-22 7.2E-27 205.7 16.6 121 346-467 39-159 (340)
15 COG1116 TauB ABC-type nitrate/ 99.9 1.4E-22 3.1E-27 197.8 12.0 116 348-468 3-118 (248)
16 TIGR03522 GldA_ABC_ATP gliding 99.9 8.5E-22 1.9E-26 199.0 16.2 118 349-467 3-120 (301)
17 COG1127 Ttg2A ABC-type transpo 99.9 2.1E-22 4.5E-27 195.3 10.7 117 346-463 6-127 (263)
18 COG1136 SalX ABC-type antimicr 99.9 1.3E-21 2.8E-26 190.0 14.1 119 349-467 2-128 (226)
19 COG1137 YhbG ABC-type (unclass 99.9 8.9E-23 1.9E-27 193.2 5.8 118 348-466 4-125 (243)
20 TIGR03265 PhnT2 putative 2-ami 99.9 2.2E-21 4.7E-26 200.6 16.0 119 348-468 4-122 (353)
21 cd03265 ABC_DrrA DrrA is the A 99.9 2.4E-21 5.3E-26 186.2 15.0 118 349-467 1-118 (220)
22 TIGR01288 nodI ATP-binding ABC 99.9 2.6E-21 5.7E-26 195.5 15.8 119 348-467 4-122 (303)
23 cd03266 ABC_NatA_sodium_export 99.9 2.8E-21 6E-26 185.1 15.0 118 349-467 2-123 (218)
24 PRK11432 fbpC ferric transport 99.9 2.4E-21 5.3E-26 200.1 15.4 120 347-468 5-124 (351)
25 PRK11650 ugpC glycerol-3-phosp 99.9 2.9E-21 6.3E-26 199.9 15.3 119 348-467 3-121 (356)
26 TIGR02314 ABC_MetN D-methionin 99.9 4.9E-21 1.1E-25 197.3 15.9 120 349-468 2-128 (343)
27 cd03263 ABC_subfamily_A The AB 99.9 5.5E-21 1.2E-25 183.4 14.6 119 349-467 1-120 (220)
28 TIGR00960 3a0501s02 Type II (G 99.9 6.5E-21 1.4E-25 182.5 14.9 119 349-467 2-125 (216)
29 COG0410 LivF ABC-type branched 99.9 2.6E-21 5.6E-26 186.8 11.9 102 348-450 3-106 (237)
30 cd03261 ABC_Org_Solvent_Resist 99.9 8.1E-21 1.7E-25 184.3 15.2 118 349-467 1-123 (235)
31 cd03292 ABC_FtsE_transporter F 99.9 1E-20 2.2E-25 180.6 14.9 119 349-467 1-123 (214)
32 PRK09452 potA putrescine/sperm 99.8 9.3E-21 2E-25 197.4 15.7 119 347-467 13-131 (375)
33 TIGR03258 PhnT 2-aminoethylpho 99.8 9.6E-21 2.1E-25 196.4 15.2 119 348-468 5-125 (362)
34 PRK11607 potG putrescine trans 99.8 1.1E-20 2.3E-25 197.1 15.6 120 347-468 18-137 (377)
35 TIGR01188 drrA daunorubicin re 99.8 7.1E-21 1.5E-25 192.3 13.6 112 356-468 1-112 (302)
36 COG3638 ABC-type phosphate/pho 99.8 7.3E-21 1.6E-25 184.2 12.8 101 348-448 3-107 (258)
37 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.8 1.2E-20 2.6E-25 180.7 14.3 119 349-467 1-127 (218)
38 cd03269 ABC_putative_ATPase Th 99.8 1.4E-20 3E-25 179.5 14.4 115 349-467 1-115 (210)
39 COG1118 CysA ABC-type sulfate/ 99.8 2.3E-21 4.9E-26 193.6 9.2 117 348-466 2-123 (345)
40 TIGR02673 FtsE cell division A 99.8 1.6E-20 3.5E-25 179.4 14.6 119 349-467 2-124 (214)
41 COG3845 ABC-type uncharacteriz 99.8 5.2E-21 1.1E-25 200.7 12.1 120 347-467 3-127 (501)
42 PRK10908 cell division protein 99.8 2.1E-20 4.6E-25 179.9 15.3 119 349-467 2-124 (222)
43 PRK11153 metN DL-methionine tr 99.8 2E-20 4.3E-25 192.7 15.8 120 349-468 2-128 (343)
44 cd03295 ABC_OpuCA_Osmoprotecti 99.8 2E-20 4.4E-25 182.5 14.9 119 349-467 1-120 (242)
45 cd03259 ABC_Carb_Solutes_like 99.8 1.6E-20 3.4E-25 179.5 13.7 117 349-467 1-117 (213)
46 cd03301 ABC_MalK_N The N-termi 99.8 1.9E-20 4.1E-25 178.8 14.0 117 349-467 1-117 (213)
47 PRK11000 maltose/maltodextrin 99.8 2.1E-20 4.5E-25 194.4 15.4 119 348-468 3-121 (369)
48 cd03268 ABC_BcrA_bacitracin_re 99.8 2E-20 4.4E-25 178.1 13.9 110 349-460 1-110 (208)
49 cd03218 ABC_YhbG The ABC trans 99.8 2.2E-20 4.8E-25 180.6 14.3 118 349-467 1-120 (232)
50 PRK10851 sulfate/thiosulfate t 99.8 2.2E-20 4.8E-25 193.1 15.2 119 348-468 2-124 (353)
51 cd03264 ABC_drug_resistance_li 99.8 2.3E-20 5E-25 178.1 13.8 117 349-467 1-117 (211)
52 cd03293 ABC_NrtD_SsuB_transpor 99.8 2.9E-20 6.3E-25 178.7 14.4 115 349-467 1-118 (220)
53 cd03258 ABC_MetN_methionine_tr 99.8 2.8E-20 6.1E-25 180.1 14.4 118 349-467 2-127 (233)
54 TIGR03864 PQQ_ABC_ATP ABC tran 99.8 4.2E-20 9.1E-25 179.6 15.5 117 349-466 2-118 (236)
55 PRK11629 lolD lipoprotein tran 99.8 4.9E-20 1.1E-24 178.8 15.9 122 347-468 4-133 (233)
56 COG1120 FepC ABC-type cobalami 99.8 1.1E-20 2.4E-25 186.7 11.4 99 348-447 2-101 (258)
57 COG0411 LivG ABC-type branched 99.8 8.8E-21 1.9E-25 184.4 10.4 100 348-448 4-105 (250)
58 cd03262 ABC_HisP_GlnQ_permease 99.8 3.9E-20 8.4E-25 176.4 14.3 118 349-467 1-122 (213)
59 PRK13538 cytochrome c biogenes 99.8 4.3E-20 9.3E-25 175.9 14.2 102 349-451 2-103 (204)
60 TIGR03608 L_ocin_972_ABC putat 99.8 3.3E-20 7E-25 176.1 13.3 116 351-467 1-121 (206)
61 cd03296 ABC_CysA_sulfate_impor 99.8 5.6E-20 1.2E-24 179.1 14.8 117 349-467 3-123 (239)
62 COG1117 PstB ABC-type phosphat 99.8 1.9E-20 4.2E-25 179.0 11.2 119 346-466 5-131 (253)
63 PRK09493 glnQ glutamine ABC tr 99.8 7.3E-20 1.6E-24 178.2 15.5 118 349-467 2-123 (240)
64 TIGR01189 ccmA heme ABC export 99.8 6E-20 1.3E-24 174.0 14.2 102 349-451 1-102 (198)
65 cd03260 ABC_PstB_phosphate_tra 99.8 4.7E-20 1E-24 177.9 13.2 117 349-467 1-126 (227)
66 cd03224 ABC_TM1139_LivF_branch 99.8 6.9E-20 1.5E-24 175.8 14.2 102 349-451 1-104 (222)
67 cd03219 ABC_Mj1267_LivG_branch 99.8 8.3E-20 1.8E-24 177.0 14.2 101 349-450 1-103 (236)
68 cd03225 ABC_cobalt_CbiO_domain 99.8 7.3E-20 1.6E-24 174.5 13.2 118 350-467 1-121 (211)
69 PRK11248 tauB taurine transpor 99.8 1.3E-19 2.9E-24 178.9 15.3 114 349-467 2-115 (255)
70 TIGR00972 3a0107s01c2 phosphat 99.8 1.5E-19 3.3E-24 176.8 15.2 116 349-466 2-126 (247)
71 PRK13540 cytochrome c biogenes 99.8 1.4E-19 3.1E-24 171.8 14.4 98 349-447 2-99 (200)
72 PRK10584 putative ABC transpor 99.8 1.8E-19 3.8E-24 174.0 15.2 121 347-467 5-133 (228)
73 PRK13644 cbiO cobalt transport 99.8 1.3E-19 2.7E-24 180.8 14.5 120 349-468 2-124 (274)
74 PRK13637 cbiO cobalt transport 99.8 1.4E-19 3.1E-24 181.7 14.9 119 349-467 3-129 (287)
75 TIGR01186 proV glycine betaine 99.8 8.9E-20 1.9E-24 189.2 13.7 112 356-468 1-117 (363)
76 PRK10619 histidine/lysine/argi 99.8 2.2E-19 4.9E-24 176.8 15.9 121 347-468 4-139 (257)
77 PRK10895 lipopolysaccharide AB 99.8 1.6E-19 3.5E-24 175.8 14.7 118 348-466 3-123 (241)
78 PRK13632 cbiO cobalt transport 99.8 1.4E-19 3E-24 180.0 14.2 121 347-467 6-129 (271)
79 PRK13647 cbiO cobalt transport 99.8 1.9E-19 4.1E-24 179.6 15.1 120 348-467 4-125 (274)
80 PRK13650 cbiO cobalt transport 99.8 1.5E-19 3.3E-24 180.7 14.3 120 348-467 4-127 (279)
81 cd03256 ABC_PhnC_transporter A 99.8 1.4E-19 3.1E-24 175.7 13.7 98 349-446 1-102 (241)
82 PRK11124 artP arginine transpo 99.8 2.2E-19 4.9E-24 175.0 15.1 118 349-467 3-128 (242)
83 cd03231 ABC_CcmA_heme_exporter 99.8 1.3E-19 2.8E-24 172.4 13.0 98 349-447 1-98 (201)
84 TIGR02211 LolD_lipo_ex lipopro 99.8 2.2E-19 4.7E-24 172.4 14.7 118 349-466 2-127 (221)
85 PRK13634 cbiO cobalt transport 99.8 1.6E-19 3.5E-24 181.6 14.3 119 349-468 3-132 (290)
86 PRK11264 putative amino-acid A 99.8 2.3E-19 5E-24 175.5 14.9 119 348-467 3-131 (250)
87 TIGR03410 urea_trans_UrtE urea 99.8 2.2E-19 4.7E-24 173.6 14.4 104 349-453 1-106 (230)
88 PRK13635 cbiO cobalt transport 99.8 2E-19 4.3E-24 180.0 14.5 121 347-467 4-127 (279)
89 PRK13539 cytochrome c biogenes 99.8 2.4E-19 5.2E-24 171.3 14.3 112 348-462 2-113 (207)
90 PRK14267 phosphate ABC transpo 99.8 2.8E-19 6E-24 175.4 15.1 118 348-466 4-131 (253)
91 PRK10070 glycine betaine trans 99.8 2E-19 4.3E-24 188.8 14.9 119 349-468 29-152 (400)
92 PRK11831 putative ABC transpor 99.8 2.9E-19 6.3E-24 177.5 15.3 119 347-466 6-129 (269)
93 PRK14247 phosphate ABC transpo 99.8 3E-19 6.6E-24 174.8 15.2 119 348-467 3-129 (250)
94 PRK13548 hmuV hemin importer A 99.8 3E-19 6.5E-24 176.4 15.2 118 348-466 2-120 (258)
95 cd03226 ABC_cobalt_CbiO_domain 99.8 1.2E-19 2.5E-24 172.7 11.8 109 351-461 2-111 (205)
96 PRK14268 phosphate ABC transpo 99.8 4.3E-19 9.3E-24 175.0 15.8 119 346-466 10-136 (258)
97 TIGR03411 urea_trans_UrtD urea 99.8 3.5E-19 7.5E-24 173.5 15.0 99 348-447 2-102 (242)
98 PRK13643 cbiO cobalt transport 99.8 3E-19 6.5E-24 179.4 14.9 118 349-467 2-130 (288)
99 PRK13646 cbiO cobalt transport 99.8 2.5E-19 5.5E-24 179.7 14.3 118 349-467 3-131 (286)
100 PRK14241 phosphate transporter 99.8 4.3E-19 9.3E-24 174.9 15.6 119 348-467 4-131 (258)
101 PRK13636 cbiO cobalt transport 99.8 3.7E-19 7.9E-24 178.3 15.2 121 347-467 4-128 (283)
102 PRK09536 btuD corrinoid ABC tr 99.8 2.5E-19 5.4E-24 188.2 14.5 99 348-447 3-102 (402)
103 PRK13652 cbiO cobalt transport 99.8 4.3E-19 9.3E-24 177.1 15.5 120 348-467 3-124 (277)
104 TIGR03005 ectoine_ehuA ectoine 99.8 4.5E-19 9.7E-24 174.0 15.2 118 349-467 1-133 (252)
105 TIGR02315 ABC_phnC phosphonate 99.8 2.5E-19 5.4E-24 174.4 13.0 98 349-446 2-103 (243)
106 COG1121 ZnuC ABC-type Mn/Zn tr 99.8 2.2E-19 4.9E-24 176.9 12.5 118 347-468 3-127 (254)
107 PRK13641 cbiO cobalt transport 99.8 4.2E-19 9.2E-24 178.2 14.7 119 348-467 2-131 (287)
108 PRK13649 cbiO cobalt transport 99.8 5E-19 1.1E-23 176.5 14.9 118 349-467 3-131 (280)
109 PRK14242 phosphate transporter 99.8 6.5E-19 1.4E-23 172.8 15.4 118 347-466 5-131 (253)
110 cd03267 ABC_NatA_like Similar 99.8 3.4E-19 7.5E-24 173.7 13.0 111 356-467 29-140 (236)
111 COG1122 CbiO ABC-type cobalt t 99.8 4.9E-19 1.1E-23 173.6 14.0 119 348-467 3-125 (235)
112 PRK13631 cbiO cobalt transport 99.8 6.5E-19 1.4E-23 179.9 15.4 121 346-467 19-162 (320)
113 PRK10744 pstB phosphate transp 99.8 7.3E-19 1.6E-23 173.6 15.2 119 347-467 12-139 (260)
114 cd03257 ABC_NikE_OppD_transpor 99.8 5.9E-19 1.3E-23 169.8 14.0 103 349-451 2-113 (228)
115 PRK15079 oligopeptide ABC tran 99.8 7E-19 1.5E-23 180.5 15.4 122 347-468 7-148 (331)
116 PRK10247 putative ABC transpor 99.8 5.9E-19 1.3E-23 170.7 14.1 103 347-451 6-109 (225)
117 TIGR02982 heterocyst_DevA ABC 99.8 7.4E-19 1.6E-23 169.2 14.6 119 349-467 2-128 (220)
118 PRK14256 phosphate ABC transpo 99.8 8.1E-19 1.8E-23 172.2 15.2 119 348-467 4-131 (252)
119 PRK13648 cbiO cobalt transport 99.8 6.7E-19 1.5E-23 174.8 14.7 121 347-467 6-129 (269)
120 PRK14235 phosphate transporter 99.8 8.8E-19 1.9E-23 173.9 15.5 119 347-467 18-146 (267)
121 PRK14273 phosphate ABC transpo 99.8 7.8E-19 1.7E-23 172.5 14.9 119 347-467 6-133 (254)
122 PRK14274 phosphate ABC transpo 99.8 9.6E-19 2.1E-23 172.5 15.2 119 347-467 11-138 (259)
123 PRK13651 cobalt transporter AT 99.8 7E-19 1.5E-23 178.5 14.6 118 349-467 3-151 (305)
124 PRK13640 cbiO cobalt transport 99.8 6.7E-19 1.4E-23 176.3 14.2 121 347-467 4-130 (282)
125 PRK14259 phosphate ABC transpo 99.8 8.6E-19 1.9E-23 174.3 14.9 104 347-452 12-123 (269)
126 PRK13638 cbiO cobalt transport 99.8 7.1E-19 1.5E-23 174.8 14.2 118 349-467 2-123 (271)
127 TIGR03873 F420-0_ABC_ATP propo 99.8 8.1E-19 1.8E-23 172.7 14.5 98 348-446 1-99 (256)
128 COG1129 MglA ABC-type sugar tr 99.8 3.3E-19 7.1E-24 189.7 12.4 121 347-468 7-133 (500)
129 PRK13639 cbiO cobalt transport 99.8 9.7E-19 2.1E-23 174.4 15.0 118 349-467 2-124 (275)
130 PRK14270 phosphate ABC transpo 99.8 1E-18 2.2E-23 171.4 15.0 119 347-467 3-130 (251)
131 PRK14269 phosphate ABC transpo 99.8 9.6E-19 2.1E-23 171.3 14.7 117 348-466 2-124 (246)
132 cd03294 ABC_Pro_Gly_Bertaine T 99.8 4E-19 8.7E-24 176.6 12.1 117 350-467 26-147 (269)
133 PRK14240 phosphate transporter 99.8 1.1E-18 2.5E-23 170.8 15.1 118 348-467 3-129 (250)
134 TIGR03740 galliderm_ABC gallid 99.8 9.5E-19 2E-23 168.6 14.1 109 349-461 1-109 (223)
135 TIGR00968 3a0106s01 sulfate AB 99.8 1.1E-18 2.4E-23 170.0 14.6 115 349-465 1-115 (237)
136 PRK13543 cytochrome c biogenes 99.8 1.2E-18 2.5E-23 167.4 14.5 103 347-452 10-112 (214)
137 PRK11614 livF leucine/isoleuci 99.8 1.4E-18 3E-23 168.9 15.2 99 348-447 5-105 (237)
138 cd03299 ABC_ModC_like Archeal 99.8 1.3E-18 2.8E-23 169.4 14.7 116 349-467 1-116 (235)
139 cd03235 ABC_Metallic_Cations A 99.8 4.4E-19 9.6E-24 169.5 11.2 92 351-447 2-95 (213)
140 PRK13633 cobalt transporter AT 99.8 1.1E-18 2.5E-23 174.3 14.4 119 348-467 4-131 (280)
141 TIGR02868 CydC thiol reductant 99.8 4.5E-19 9.7E-24 191.4 12.3 113 348-463 334-446 (529)
142 PRK14250 phosphate ABC transpo 99.8 7.9E-19 1.7E-23 171.5 12.8 101 348-450 3-104 (241)
143 cd03298 ABC_ThiQ_thiamine_tran 99.8 9E-19 2E-23 167.2 12.9 95 349-447 1-95 (211)
144 TIGR02769 nickel_nikE nickel i 99.8 1.5E-18 3.2E-23 172.0 14.8 120 348-467 2-136 (265)
145 TIGR02324 CP_lyasePhnL phospho 99.8 1.2E-18 2.7E-23 167.7 13.8 119 349-467 2-135 (224)
146 TIGR01978 sufC FeS assembly AT 99.8 1.2E-18 2.6E-23 169.4 13.8 118 349-467 1-129 (243)
147 PRK15112 antimicrobial peptide 99.8 1.5E-18 3.2E-23 172.3 14.6 120 348-467 4-135 (267)
148 cd03300 ABC_PotA_N PotA is an 99.8 1.5E-18 3.2E-23 168.5 14.3 113 349-463 1-113 (232)
149 PRK10575 iron-hydroxamate tran 99.8 1.7E-18 3.8E-23 171.5 15.0 99 347-446 10-109 (265)
150 cd03233 ABC_PDR_domain1 The pl 99.8 9.5E-19 2.1E-23 166.9 12.6 101 348-448 3-109 (202)
151 TIGR03415 ABC_choXWV_ATP choli 99.8 1.6E-18 3.4E-23 181.0 15.2 114 353-467 29-151 (382)
152 PRK13642 cbiO cobalt transport 99.8 1.5E-18 3.2E-23 173.3 14.4 121 348-468 4-128 (277)
153 PRK14254 phosphate ABC transpo 99.8 2.8E-18 6.1E-23 172.2 16.4 118 346-466 37-162 (285)
154 PRK11231 fecE iron-dicitrate t 99.8 1.7E-18 3.7E-23 170.3 14.4 98 348-446 2-100 (255)
155 cd03229 ABC_Class3 This class 99.8 1.5E-18 3.3E-23 162.0 13.2 96 349-445 1-99 (178)
156 TIGR01166 cbiO cobalt transpor 99.8 1.2E-18 2.6E-23 163.9 12.5 107 360-467 3-114 (190)
157 cd03230 ABC_DR_subfamily_A Thi 99.8 2.3E-18 5E-23 160.1 14.3 95 349-444 1-95 (173)
158 PRK14237 phosphate transporter 99.8 2.5E-18 5.4E-23 170.7 15.4 119 347-467 19-146 (267)
159 PRK14261 phosphate ABC transpo 99.8 2.5E-18 5.5E-23 168.8 15.2 120 347-468 5-133 (253)
160 PRK13645 cbiO cobalt transport 99.8 1.9E-18 4E-23 173.4 14.5 118 348-466 6-135 (289)
161 PRK11300 livG leucine/isoleuci 99.8 2.6E-18 5.6E-23 168.6 15.1 99 348-447 5-105 (255)
162 PRK14262 phosphate ABC transpo 99.8 2.6E-18 5.7E-23 168.2 15.1 103 348-452 3-113 (250)
163 PRK14251 phosphate ABC transpo 99.8 3.3E-18 7.1E-23 167.7 15.3 118 348-467 4-130 (251)
164 PRK14239 phosphate transporter 99.8 3.4E-18 7.3E-23 167.5 15.3 117 348-466 5-130 (252)
165 PRK14272 phosphate ABC transpo 99.8 3.1E-18 6.8E-23 167.7 15.0 116 348-464 4-128 (252)
166 PRK10253 iron-enterobactin tra 99.8 2.3E-18 5E-23 170.6 14.2 100 346-446 5-105 (265)
167 cd03213 ABCG_EPDR ABCG transpo 99.8 2.8E-18 6E-23 162.7 14.1 107 348-456 3-116 (194)
168 PRK11247 ssuB aliphatic sulfon 99.8 1.9E-18 4.2E-23 171.2 13.5 95 347-446 11-105 (257)
169 PRK14249 phosphate ABC transpo 99.8 3.5E-18 7.6E-23 167.6 15.1 118 348-467 4-130 (251)
170 PRK11308 dppF dipeptide transp 99.8 3.6E-18 7.9E-23 174.9 15.5 122 347-468 4-141 (327)
171 PRK14253 phosphate ABC transpo 99.8 3.4E-18 7.4E-23 167.3 14.3 116 348-465 3-126 (249)
172 PRK14271 phosphate ABC transpo 99.8 6E-18 1.3E-22 169.0 16.3 118 347-466 20-145 (276)
173 PRK10762 D-ribose transporter 99.8 2.8E-18 6E-23 184.5 14.3 119 348-467 4-128 (501)
174 PRK14236 phosphate transporter 99.8 6.9E-18 1.5E-22 168.0 16.1 104 347-452 24-135 (272)
175 PRK14245 phosphate ABC transpo 99.8 5.9E-18 1.3E-22 165.9 15.3 118 348-467 3-129 (250)
176 PRK14248 phosphate ABC transpo 99.8 6.7E-18 1.5E-22 167.4 15.6 103 347-451 20-130 (268)
177 PRK14246 phosphate ABC transpo 99.8 4.4E-18 9.5E-23 168.3 14.2 120 347-467 9-136 (257)
178 PRK14260 phosphate ABC transpo 99.8 5.3E-18 1.1E-22 167.4 14.7 117 347-465 6-131 (259)
179 TIGR01277 thiQ thiamine ABC tr 99.8 3.9E-18 8.5E-23 163.3 13.4 93 350-446 2-94 (213)
180 PRK14238 phosphate transporter 99.8 5.9E-18 1.3E-22 168.5 15.0 117 347-465 23-148 (271)
181 PRK09984 phosphonate/organopho 99.8 5.3E-18 1.1E-22 167.5 14.4 98 348-446 4-110 (262)
182 TIGR00956 3a01205 Pleiotropic 99.8 1E-16 2.2E-21 190.5 27.9 117 348-467 759-884 (1394)
183 COG4525 TauB ABC-type taurine 99.8 2E-18 4.4E-23 163.3 10.7 115 349-468 4-120 (259)
184 cd03254 ABCC_Glucan_exporter_l 99.8 2.5E-18 5.4E-23 165.9 11.6 98 349-447 3-101 (229)
185 PRK14255 phosphate ABC transpo 99.8 7.8E-18 1.7E-22 165.1 15.3 104 347-452 4-115 (252)
186 PRK13549 xylose transporter AT 99.8 4E-18 8.6E-23 183.5 14.3 119 348-467 5-130 (506)
187 cd03234 ABCG_White The White s 99.8 4.9E-18 1.1E-22 164.1 13.2 100 349-450 4-109 (226)
188 cd03215 ABC_Carb_Monos_II This 99.8 7.8E-18 1.7E-22 157.8 13.9 96 348-448 4-104 (182)
189 PRK14275 phosphate ABC transpo 99.8 9.8E-18 2.1E-22 168.3 15.5 104 347-452 38-149 (286)
190 TIGR03797 NHPM_micro_ABC2 NHPM 99.8 3.2E-18 7E-23 190.5 13.1 112 348-463 451-564 (686)
191 PRK11288 araG L-arabinose tran 99.8 6.5E-18 1.4E-22 181.7 14.9 119 348-467 4-127 (501)
192 cd03251 ABCC_MsbA MsbA is an e 99.8 4.1E-18 9E-23 164.9 12.0 99 349-448 1-101 (234)
193 PRK13541 cytochrome c biogenes 99.8 7.8E-18 1.7E-22 159.3 13.6 98 349-451 2-99 (195)
194 PRK14258 phosphate ABC transpo 99.8 1E-17 2.2E-22 165.6 15.0 117 347-465 6-131 (261)
195 PRK10771 thiQ thiamine transpo 99.8 7.3E-18 1.6E-22 163.5 13.5 94 349-446 2-95 (232)
196 COG4604 CeuD ABC-type enteroch 99.8 5.7E-19 1.2E-23 167.2 5.4 120 348-468 1-123 (252)
197 cd03247 ABCC_cytochrome_bd The 99.8 6.1E-18 1.3E-22 157.8 12.3 94 349-443 1-95 (178)
198 PRK13547 hmuV hemin importer A 99.8 8.3E-18 1.8E-22 168.0 14.0 97 349-446 2-107 (272)
199 cd03252 ABCC_Hemolysin The ABC 99.8 4.8E-18 1E-22 164.9 11.9 98 349-447 1-100 (237)
200 cd03245 ABCC_bacteriocin_expor 99.8 5E-18 1.1E-22 162.9 11.9 97 349-446 3-101 (220)
201 cd03232 ABC_PDR_domain2 The pl 99.8 1.2E-17 2.6E-22 158.0 14.3 106 348-456 3-113 (192)
202 cd03244 ABCC_MRP_domain2 Domai 99.8 4.7E-18 1E-22 163.2 11.6 97 349-446 3-101 (221)
203 PRK14252 phosphate ABC transpo 99.8 1.5E-17 3.2E-22 164.8 15.5 106 346-453 14-129 (265)
204 COG1124 DppF ABC-type dipeptid 99.8 6.1E-18 1.3E-22 164.6 12.4 118 348-467 3-127 (252)
205 PRK14266 phosphate ABC transpo 99.8 1.2E-17 2.6E-22 163.5 14.7 118 348-467 3-129 (250)
206 PRK15439 autoinducer 2 ABC tra 99.7 6.9E-18 1.5E-22 182.0 13.8 100 347-447 10-111 (510)
207 PRK14244 phosphate ABC transpo 99.7 1.2E-17 2.6E-22 163.8 14.2 101 349-451 6-114 (251)
208 PRK09700 D-allose transporter 99.7 8.2E-18 1.8E-22 181.2 14.2 119 348-467 5-132 (510)
209 PRK14243 phosphate transporter 99.7 1.1E-17 2.4E-22 165.8 14.0 102 348-451 10-119 (264)
210 PRK10419 nikE nickel transport 99.7 1.5E-17 3.2E-22 165.3 14.9 120 348-467 3-137 (268)
211 cd03297 ABC_ModC_molybdenum_tr 99.7 1E-17 2.2E-22 160.4 13.2 93 352-448 4-101 (214)
212 cd03369 ABCC_NFT1 Domain 2 of 99.7 6.9E-18 1.5E-22 160.8 11.7 98 348-446 6-105 (207)
213 PRK10790 putative multidrug tr 99.7 6.6E-18 1.4E-22 184.8 13.0 111 348-462 340-451 (592)
214 COG4175 ProV ABC-type proline/ 99.7 3.1E-18 6.8E-23 171.7 9.4 121 348-468 4-152 (386)
215 TIGR02142 modC_ABC molybdenum 99.7 1.2E-17 2.5E-22 172.8 13.9 110 353-467 4-118 (354)
216 PRK11174 cysteine/glutathione 99.7 8E-18 1.7E-22 183.9 13.4 112 348-463 349-461 (588)
217 PRK14263 phosphate ABC transpo 99.7 2.2E-17 4.8E-22 163.6 15.3 117 347-466 7-131 (261)
218 PRK11022 dppD dipeptide transp 99.7 1.8E-17 3.9E-22 169.7 14.9 121 348-468 3-138 (326)
219 TIGR01193 bacteriocin_ABC ABC- 99.7 4.4E-18 9.6E-23 190.0 11.2 113 348-462 473-586 (708)
220 PRK11144 modC molybdate transp 99.7 1.3E-17 2.7E-22 172.5 13.7 94 349-446 2-100 (352)
221 cd03253 ABCC_ATM1_transporter 99.7 1E-17 2.2E-22 162.4 12.3 98 349-447 1-99 (236)
222 PRK14265 phosphate ABC transpo 99.7 2.4E-17 5.1E-22 164.5 15.0 103 347-451 19-129 (274)
223 cd03228 ABCC_MRP_Like The MRP 99.7 1.4E-17 3E-22 154.6 12.3 94 349-443 1-96 (171)
224 PRK09473 oppD oligopeptide tra 99.7 2.4E-17 5.2E-22 169.1 15.1 121 347-467 11-145 (330)
225 cd03246 ABCC_Protease_Secretio 99.7 1.7E-17 3.7E-22 154.2 12.7 94 349-443 1-96 (173)
226 PRK10261 glutathione transport 99.7 2.1E-17 4.6E-22 182.5 15.6 122 347-468 312-450 (623)
227 PRK11701 phnK phosphonate C-P 99.7 2.5E-17 5.3E-22 162.4 14.4 98 348-446 6-115 (258)
228 TIGR02857 CydD thiol reductant 99.7 1.1E-17 2.3E-22 180.7 12.6 113 348-463 320-434 (529)
229 TIGR02633 xylG D-xylose ABC tr 99.7 2.2E-17 4.8E-22 177.3 14.9 118 349-467 2-127 (500)
230 TIGR03796 NHPM_micro_ABC1 NHPM 99.7 8.1E-18 1.8E-22 187.9 11.8 114 347-463 476-591 (710)
231 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.7 8.1E-18 1.8E-22 163.5 10.0 98 349-447 1-101 (238)
232 cd03290 ABCC_SUR1_N The SUR do 99.7 1.7E-17 3.6E-22 159.4 12.0 97 350-447 2-103 (218)
233 cd03248 ABCC_TAP TAP, the Tran 99.7 1.6E-17 3.5E-22 160.2 11.9 100 346-446 9-111 (226)
234 TIGR03269 met_CoM_red_A2 methy 99.7 2.2E-17 4.7E-22 178.3 13.7 119 349-468 1-156 (520)
235 PRK11176 lipid transporter ATP 99.7 1.1E-17 2.3E-22 182.6 11.3 114 348-463 341-456 (582)
236 PRK10261 glutathione transport 99.7 3.7E-17 8.1E-22 180.5 15.7 122 347-468 11-153 (623)
237 PRK11160 cysteine/glutathione 99.7 1.4E-17 3.1E-22 182.0 11.9 114 347-463 337-452 (574)
238 COG1134 TagH ABC-type polysacc 99.7 2.3E-17 4.9E-22 160.8 11.9 95 362-467 40-134 (249)
239 PRK10982 galactose/methyl gala 99.7 2.3E-17 5E-22 176.9 13.2 116 351-467 1-121 (491)
240 COG1132 MdlB ABC-type multidru 99.7 1.3E-17 2.8E-22 181.7 11.3 115 347-464 327-442 (567)
241 PRK10418 nikD nickel transport 99.7 4E-17 8.6E-22 160.7 13.5 102 348-452 4-111 (254)
242 TIGR00958 3a01208 Conjugate Tr 99.7 1.3E-17 2.9E-22 186.6 11.3 113 348-463 478-593 (711)
243 COG4586 ABC-type uncharacteriz 99.7 4.6E-18 1E-22 167.7 6.5 106 362-467 37-143 (325)
244 PRK13657 cyclic beta-1,2-gluca 99.7 2.5E-17 5.5E-22 180.2 12.9 112 348-462 334-446 (588)
245 cd03289 ABCC_CFTR2 The CFTR su 99.7 2.9E-17 6.3E-22 164.5 12.1 110 349-463 3-114 (275)
246 CHL00131 ycf16 sulfate ABC tra 99.7 7.5E-17 1.6E-21 158.0 14.7 100 347-447 6-109 (252)
247 TIGR02323 CP_lyasePhnK phospho 99.7 6.5E-17 1.4E-21 158.7 14.2 98 348-446 3-112 (253)
248 cd03223 ABCD_peroxisomal_ALDP 99.7 5.2E-17 1.1E-21 150.5 12.4 95 349-455 1-95 (166)
249 TIGR03375 type_I_sec_LssB type 99.7 2.5E-17 5.4E-22 183.6 12.1 113 348-463 463-577 (694)
250 PRK14264 phosphate ABC transpo 99.7 9.5E-17 2.1E-21 162.7 15.3 99 347-447 44-150 (305)
251 COG4988 CydD ABC-type transpor 99.7 2.3E-17 5E-22 176.6 11.1 112 349-463 321-433 (559)
252 KOG0058|consensus 99.7 1.6E-17 3.4E-22 181.1 9.8 113 347-462 464-579 (716)
253 PRK14257 phosphate ABC transpo 99.7 1.1E-16 2.3E-21 164.3 15.4 109 347-456 79-196 (329)
254 cd03250 ABCC_MRP_domain1 Domai 99.7 3E-17 6.6E-22 156.0 10.6 86 349-447 1-90 (204)
255 PLN03211 ABC transporter G-25; 99.7 3.7E-17 8E-22 181.6 12.9 114 350-467 70-188 (659)
256 COG2274 SunT ABC-type bacterio 99.7 2.9E-17 6.4E-22 182.8 12.0 100 347-447 470-571 (709)
257 TIGR03269 met_CoM_red_A2 methy 99.7 7.7E-17 1.7E-21 174.0 14.8 120 347-467 278-409 (520)
258 PRK15056 manganese/iron transp 99.7 7.9E-17 1.7E-21 160.3 13.1 96 348-445 6-103 (272)
259 COG4133 CcmA ABC-type transpor 99.7 1.5E-17 3.2E-22 156.6 7.3 114 349-463 3-117 (209)
260 cd03217 ABC_FeS_Assembly ABC-t 99.7 1.2E-16 2.6E-21 152.0 13.4 95 349-444 1-99 (200)
261 TIGR02204 MsbA_rel ABC transpo 99.7 4.5E-17 9.8E-22 177.3 11.7 113 347-462 336-451 (576)
262 PRK15093 antimicrobial peptide 99.7 1.5E-16 3.3E-21 163.0 14.9 99 348-446 3-115 (330)
263 TIGR01842 type_I_sec_PrtD type 99.7 6.1E-17 1.3E-21 175.7 12.5 112 348-462 316-429 (544)
264 KOG0057|consensus 99.7 3E-17 6.6E-22 174.1 9.6 98 348-447 351-449 (591)
265 TIGR02203 MsbA_lipidA lipid A 99.7 5E-17 1.1E-21 176.7 11.2 114 348-463 330-445 (571)
266 TIGR01192 chvA glucan exporter 99.7 8.5E-17 1.9E-21 176.3 12.7 112 348-462 334-446 (585)
267 cd03288 ABCC_SUR2 The SUR doma 99.7 7.5E-17 1.6E-21 159.1 10.9 98 347-445 18-117 (257)
268 COG4181 Predicted ABC-type tra 99.7 3.5E-17 7.6E-22 152.2 7.8 106 348-453 6-119 (228)
269 PRK15134 microcin C ABC transp 99.7 1.8E-16 3.9E-21 171.6 14.7 121 348-468 5-141 (529)
270 TIGR02633 xylG D-xylose ABC tr 99.7 8.4E-17 1.8E-21 172.9 11.9 122 347-468 256-390 (500)
271 COG4674 Uncharacterized ABC-ty 99.7 6.5E-17 1.4E-21 153.1 9.5 101 347-448 4-107 (249)
272 TIGR01846 type_I_sec_HlyB type 99.7 8.2E-17 1.8E-21 179.6 11.7 113 347-462 454-568 (694)
273 PRK15134 microcin C ABC transp 99.7 1.4E-16 3E-21 172.5 13.0 120 347-467 274-411 (529)
274 PRK09544 znuC high-affinity zi 99.7 2E-16 4.3E-21 156.2 13.0 87 348-445 4-92 (251)
275 TIGR02770 nickel_nikD nickel i 99.7 1.4E-16 2.9E-21 154.6 11.4 104 364-468 1-110 (230)
276 COG4559 ABC-type hemin transpo 99.7 8.7E-17 1.9E-21 153.9 9.7 102 349-451 2-104 (259)
277 PRK03695 vitamin B12-transport 99.7 1.3E-16 2.8E-21 156.8 11.2 110 350-466 2-112 (248)
278 PRK09580 sufC cysteine desulfu 99.7 3E-16 6.5E-21 153.2 13.2 96 349-445 2-101 (248)
279 PRK10535 macrolide transporter 99.7 3.9E-16 8.5E-21 173.2 15.8 120 348-467 4-131 (648)
280 PRK09700 D-allose transporter 99.7 1.4E-16 3E-21 171.7 11.7 97 347-446 264-365 (510)
281 PRK10789 putative multidrug tr 99.7 1.3E-16 2.9E-21 174.1 11.7 112 348-462 313-426 (569)
282 PF00005 ABC_tran: ABC transpo 99.7 1.1E-16 2.4E-21 141.9 9.0 78 365-442 1-79 (137)
283 PLN03130 ABC transporter C fam 99.7 1.3E-16 2.9E-21 191.7 12.5 112 348-463 1237-1350(1622)
284 PLN03232 ABC transporter C fam 99.7 1E-16 2.2E-21 191.8 11.3 112 348-463 1234-1347(1495)
285 PRK13549 xylose transporter AT 99.7 2.1E-16 4.5E-21 170.3 12.5 122 347-468 258-392 (506)
286 COG4161 ArtP ABC-type arginine 99.7 1.1E-16 2.5E-21 147.7 8.1 121 348-469 2-130 (242)
287 TIGR01184 ntrCD nitrate transp 99.7 3.5E-16 7.6E-21 152.0 12.1 99 365-467 1-101 (230)
288 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.7 2.4E-16 5.2E-21 152.7 10.8 107 349-467 23-129 (224)
289 PTZ00243 ABC transporter; Prov 99.7 2.1E-16 4.5E-21 189.6 12.7 112 348-463 1308-1421(1560)
290 COG4619 ABC-type uncharacteriz 99.7 4E-17 8.6E-22 151.5 4.8 92 360-452 14-106 (223)
291 PRK10522 multidrug transporter 99.7 1.9E-16 4.2E-21 172.0 10.9 94 348-442 322-416 (547)
292 COG4598 HisP ABC-type histidin 99.7 4.7E-17 1E-21 152.4 4.8 121 347-468 5-140 (256)
293 cd03216 ABC_Carb_Monos_I This 99.7 3.9E-16 8.3E-21 144.2 10.7 80 349-429 1-82 (163)
294 COG1123 ATPase components of v 99.7 5.7E-16 1.2E-20 166.2 13.4 123 346-468 278-416 (539)
295 TIGR00957 MRP_assoc_pro multi 99.7 2.7E-16 5.9E-21 188.5 12.0 112 348-463 1284-1397(1522)
296 PRK13546 teichoic acids export 99.7 1.5E-15 3.3E-20 151.2 14.7 107 348-466 4-129 (264)
297 PRK11819 putative ABC transpor 99.7 3.9E-16 8.3E-21 170.2 11.1 90 347-446 5-94 (556)
298 PLN03140 ABC transporter G fam 99.6 4.2E-14 9.1E-19 168.6 28.8 119 348-468 867-1002(1470)
299 COG3840 ThiQ ABC-type thiamine 99.6 3E-16 6.6E-21 147.2 8.3 94 349-446 2-95 (231)
300 PTZ00265 multidrug resistance 99.6 4.8E-16 1E-20 185.4 10.9 113 348-463 1165-1334(1466)
301 PRK15064 ABC transporter ATP-b 99.6 7E-16 1.5E-20 167.1 11.2 87 349-446 2-88 (530)
302 TIGR00955 3a01204 The Eye Pigm 99.6 9.5E-16 2.1E-20 169.2 12.4 105 361-467 37-147 (617)
303 TIGR03719 ABC_ABC_ChvD ATP-bin 99.6 6.2E-16 1.3E-20 168.4 10.7 89 348-446 4-92 (552)
304 PRK10938 putative molybdenum t 99.6 6.9E-16 1.5E-20 165.4 10.9 97 348-445 3-108 (490)
305 PRK15064 ABC transporter ATP-b 99.6 1.7E-15 3.8E-20 164.0 13.0 89 347-446 318-408 (530)
306 KOG0056|consensus 99.6 4.5E-16 9.6E-21 163.1 7.8 99 347-446 536-635 (790)
307 PRK11819 putative ABC transpor 99.6 1.8E-15 3.9E-20 165.0 12.8 94 347-451 323-417 (556)
308 KOG0055|consensus 99.6 6.5E-16 1.4E-20 176.8 9.6 112 347-461 349-463 (1228)
309 PRK10938 putative molybdenum t 99.6 1.9E-15 4.2E-20 162.0 12.0 97 347-444 259-360 (490)
310 TIGR01194 cyc_pep_trnsptr cycl 99.6 1.2E-15 2.6E-20 166.3 10.5 96 347-443 336-436 (555)
311 TIGR03719 ABC_ABC_ChvD ATP-bin 99.6 2.4E-15 5.2E-20 163.8 12.5 94 347-451 321-415 (552)
312 PRK10762 D-ribose transporter 99.6 2.2E-15 4.8E-20 162.1 11.9 116 347-468 256-382 (501)
313 cd03214 ABC_Iron-Siderophores_ 99.6 8.6E-16 1.9E-20 143.8 7.4 79 350-429 1-80 (180)
314 KOG0055|consensus 99.6 1.2E-15 2.7E-20 174.5 9.7 113 348-463 987-1102(1228)
315 COG1101 PhnK ABC-type uncharac 99.6 1.2E-15 2.6E-20 146.4 7.4 99 349-447 2-107 (263)
316 TIGR01271 CFTR_protein cystic 99.6 3.4E-15 7.3E-20 178.8 13.0 111 348-463 1217-1329(1490)
317 TIGR00954 3a01203 Peroxysomal 99.6 3.7E-15 7.9E-20 165.8 11.9 90 347-447 450-539 (659)
318 PRK11147 ABC transporter ATPas 99.6 4.6E-15 1E-19 164.3 12.5 91 346-447 317-408 (635)
319 COG0444 DppD ABC-type dipeptid 99.6 6.2E-15 1.4E-19 148.9 12.3 120 349-468 2-138 (316)
320 COG0396 sufC Cysteine desulfur 99.6 6E-15 1.3E-19 142.8 11.6 122 348-469 3-131 (251)
321 PRK10982 galactose/methyl gala 99.6 4.6E-15 9.9E-20 159.2 12.0 93 347-442 249-346 (491)
322 PRK11288 araG L-arabinose tran 99.6 3.7E-15 7.9E-20 160.5 11.2 94 348-446 257-355 (501)
323 PRK13545 tagH teichoic acids e 99.6 1.1E-14 2.4E-19 156.8 14.5 109 347-467 20-130 (549)
324 KOG0061|consensus 99.6 1E-14 2.2E-19 160.9 14.2 119 348-468 25-153 (613)
325 PRK15177 Vi polysaccharide exp 99.6 5.5E-15 1.2E-19 142.3 10.1 87 363-461 1-88 (213)
326 PTZ00265 multidrug resistance 99.6 2.6E-15 5.5E-20 179.2 9.3 98 348-446 382-483 (1466)
327 cd03291 ABCC_CFTR1 The CFTR su 99.6 7.5E-15 1.6E-19 147.7 10.6 85 346-446 37-121 (282)
328 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.6 1.1E-14 2.3E-19 132.2 9.9 70 349-429 1-70 (144)
329 COG4167 SapF ABC-type antimicr 99.6 5.6E-15 1.2E-19 138.9 8.0 121 348-468 4-136 (267)
330 COG4136 ABC-type uncharacteriz 99.6 6E-15 1.3E-19 134.9 7.8 113 349-463 3-121 (213)
331 COG4987 CydC ABC-type transpor 99.6 2.8E-15 6E-20 159.1 6.1 112 348-462 336-449 (573)
332 PRK15439 autoinducer 2 ABC tra 99.6 2E-14 4.3E-19 155.3 12.1 93 347-445 267-364 (510)
333 COG1123 ATPase components of v 99.5 3.2E-14 6.9E-19 152.8 13.3 121 348-468 5-140 (539)
334 KOG0054|consensus 99.5 1.2E-14 2.6E-19 169.5 9.7 113 347-463 1137-1251(1381)
335 TIGR00956 3a01205 Pleiotropic 99.5 2.4E-14 5.1E-19 170.5 12.4 90 361-450 73-166 (1394)
336 cd03237 ABC_RNaseL_inhibitor_d 99.5 2.4E-14 5.1E-19 141.2 9.9 76 362-448 7-87 (246)
337 COG4618 ArpD ABC-type protease 99.5 1.6E-14 3.4E-19 152.5 9.1 99 348-447 334-434 (580)
338 cd03236 ABC_RNaseL_inhibitor_d 99.5 1.6E-14 3.4E-19 143.2 8.5 93 352-446 4-110 (255)
339 cd00267 ABC_ATPase ABC (ATP-bi 99.5 3.8E-14 8.3E-19 129.4 10.0 78 351-429 2-80 (157)
340 PRK10636 putative ABC transpor 99.5 7E-14 1.5E-18 155.0 12.6 88 346-444 310-399 (638)
341 TIGR03771 anch_rpt_ABC anchore 99.5 4.8E-14 1E-18 136.4 9.7 73 370-446 1-75 (223)
342 PRK13409 putative ATPase RIL; 99.5 8.2E-14 1.8E-18 153.2 12.6 86 347-446 339-424 (590)
343 TIGR01187 potA spermidine/putr 99.5 6.5E-14 1.4E-18 143.4 9.8 87 380-467 1-87 (325)
344 PLN03140 ABC transporter G fam 99.5 4E-14 8.6E-19 168.8 9.2 89 361-451 177-268 (1470)
345 PLN03073 ABC transporter F fam 99.5 1.6E-13 3.4E-18 154.0 13.2 86 347-444 507-592 (718)
346 PRK10636 putative ABC transpor 99.5 1.4E-13 3.1E-18 152.6 12.3 72 349-431 2-73 (638)
347 COG4608 AppF ABC-type oligopep 99.5 1.2E-13 2.5E-18 137.0 9.8 67 348-414 4-78 (268)
348 cd03222 ABC_RNaseL_inhibitor T 99.5 8.8E-14 1.9E-18 131.0 8.1 68 352-432 4-71 (177)
349 COG1119 ModF ABC-type molybden 99.5 9.8E-14 2.1E-18 135.6 7.6 98 346-444 29-130 (257)
350 COG0488 Uup ATPase components 99.4 2.5E-13 5.5E-18 147.2 10.0 87 348-445 3-89 (530)
351 COG4148 ModC ABC-type molybdat 99.4 1.2E-13 2.6E-18 137.1 6.4 81 367-447 16-101 (352)
352 TIGR00957 MRP_assoc_pro multi 99.4 5.9E-13 1.3E-17 160.0 11.9 87 348-447 636-723 (1522)
353 PRK11147 ABC transporter ATPas 99.4 6.2E-13 1.4E-17 147.4 11.1 62 348-410 3-64 (635)
354 KOG0065|consensus 99.4 1E-11 2.3E-16 143.0 21.0 117 349-467 788-912 (1391)
355 COG4778 PhnL ABC-type phosphon 99.4 3.6E-13 7.8E-18 125.5 7.0 121 348-468 4-139 (235)
356 PRK13409 putative ATPase RIL; 99.4 3E-13 6.4E-18 148.8 7.3 92 353-445 78-186 (590)
357 PLN03232 ABC transporter C fam 99.4 6.6E-13 1.4E-17 159.4 10.7 100 348-462 614-715 (1495)
358 PLN03130 ABC transporter C fam 99.4 9.4E-13 2E-17 158.8 10.4 99 348-462 614-715 (1622)
359 COG4172 ABC-type uncharacteriz 99.4 3.9E-12 8.4E-17 131.6 12.9 119 346-465 274-410 (534)
360 COG5265 ATM1 ABC-type transpor 99.4 6.8E-13 1.5E-17 137.7 6.8 98 348-446 262-360 (497)
361 TIGR01271 CFTR_protein cystic 99.4 2.5E-12 5.5E-17 154.4 11.5 73 362-447 439-511 (1490)
362 COG4615 PvdE ABC-type sideroph 99.3 7.4E-13 1.6E-17 136.5 4.3 92 346-437 320-412 (546)
363 COG0488 Uup ATPase components 99.3 6E-12 1.3E-16 136.5 10.5 93 345-447 318-411 (530)
364 cd00820 PEPCK_HprK Phosphoenol 99.3 3.7E-12 8E-17 110.7 6.3 75 362-445 2-77 (107)
365 COG3845 ABC-type uncharacteriz 99.3 2.1E-11 4.6E-16 128.9 12.0 119 349-467 258-389 (501)
366 COG4172 ABC-type uncharacteriz 99.3 2.3E-11 4.9E-16 126.0 11.1 122 347-468 5-142 (534)
367 PLN03073 ABC transporter F fam 99.3 4.2E-12 9.1E-17 142.6 6.1 67 345-412 174-243 (718)
368 PTZ00243 ABC transporter; Prov 99.2 3.2E-11 7E-16 145.3 10.4 74 360-446 671-744 (1560)
369 COG4107 PhnK ABC-type phosphon 99.1 2.9E-11 6.3E-16 113.3 4.2 114 347-461 5-135 (258)
370 KOG0054|consensus 99.1 4.9E-10 1.1E-14 131.5 11.7 91 345-448 515-607 (1381)
371 cd03238 ABC_UvrA The excision 99.0 2.5E-10 5.5E-15 107.5 5.7 61 361-429 7-67 (176)
372 KOG0060|consensus 98.9 6.3E-09 1.4E-13 111.9 10.8 109 346-462 431-545 (659)
373 cd03272 ABC_SMC3_euk Eukaryoti 98.9 9.2E-10 2E-14 107.2 2.9 93 349-448 4-125 (243)
374 COG4178 ABC-type uncharacteriz 98.9 1.1E-08 2.3E-13 112.0 10.6 106 346-462 390-495 (604)
375 COG4138 BtuD ABC-type cobalami 98.8 2.2E-09 4.7E-14 101.0 4.4 92 349-446 4-96 (248)
376 cd03278 ABC_SMC_barmotin Barmo 98.8 1.2E-09 2.7E-14 104.3 2.6 66 366-434 14-88 (197)
377 TIGR03238 dnd_assoc_3 dnd syst 98.8 1.2E-09 2.6E-14 116.4 2.4 64 362-431 19-87 (504)
378 cd03274 ABC_SMC4_euk Eukaryoti 98.8 3.6E-10 7.7E-15 109.2 -2.3 80 349-449 6-86 (212)
379 COG1129 MglA ABC-type sugar tr 98.8 2.7E-08 5.7E-13 106.9 10.6 118 346-468 261-388 (500)
380 PRK07196 fliI flagellum-specif 98.7 1.5E-08 3.2E-13 107.7 6.0 90 360-450 141-240 (434)
381 PRK06002 fliI flagellum-specif 98.6 7.5E-08 1.6E-12 102.6 9.0 86 346-432 137-230 (450)
382 KOG2355|consensus 98.6 6.2E-08 1.3E-12 93.3 7.1 70 346-415 11-80 (291)
383 cd01130 VirB11-like_ATPase Typ 98.6 6.6E-08 1.4E-12 91.2 7.2 83 365-449 15-99 (186)
384 KOG0064|consensus 98.6 7.8E-08 1.7E-12 102.8 8.4 106 346-462 479-589 (728)
385 cd03283 ABC_MutS-like MutS-lik 98.6 9E-09 1.9E-13 98.6 -0.1 88 362-468 14-101 (199)
386 cd03273 ABC_SMC2_euk Eukaryoti 98.6 6.6E-09 1.4E-13 102.3 -1.1 91 349-446 6-110 (251)
387 KOG0065|consensus 98.6 8.4E-08 1.8E-12 111.4 7.5 89 362-452 128-219 (1391)
388 KOG0927|consensus 98.5 4.9E-08 1.1E-12 104.6 3.6 67 345-411 386-452 (614)
389 COG4555 NatA ABC-type Na+ tran 98.5 1.7E-08 3.6E-13 96.8 0.1 55 44-98 48-102 (245)
390 TIGR02858 spore_III_AA stage I 98.5 8.6E-08 1.9E-12 96.3 4.6 66 376-442 112-179 (270)
391 cd03240 ABC_Rad50 The catalyti 98.5 4.2E-08 9.2E-13 94.1 1.1 73 370-445 18-99 (204)
392 KOG0062|consensus 98.4 3.4E-07 7.4E-12 97.7 6.7 136 318-463 331-468 (582)
393 COG1131 CcmA ABC-type multidru 98.4 4.5E-08 9.8E-13 99.2 -0.3 57 43-99 50-106 (293)
394 cd03270 ABC_UvrA_I The excisio 98.4 2.1E-07 4.5E-12 90.6 3.2 33 360-392 6-38 (226)
395 cd03279 ABC_sbcCD SbcCD and ot 98.4 2.4E-07 5.2E-12 89.2 3.2 79 348-432 5-86 (213)
396 KOG0066|consensus 98.3 7.9E-07 1.7E-11 93.5 6.5 104 345-461 583-688 (807)
397 COG1245 Predicted ATPase, RNas 98.3 1.2E-06 2.6E-11 92.6 7.7 83 349-446 343-425 (591)
398 PRK09825 idnK D-gluconate kina 98.3 4.3E-07 9.4E-12 85.4 3.8 69 374-447 2-71 (176)
399 COG2401 ABC-type ATPase fused 98.3 7.8E-07 1.7E-11 93.1 5.2 49 362-410 396-452 (593)
400 PRK06995 flhF flagellar biosyn 98.2 4.6E-07 1E-11 97.6 2.8 73 363-454 244-316 (484)
401 TIGR00554 panK_bact pantothena 98.2 7.6E-07 1.6E-11 90.3 4.0 76 375-451 62-139 (290)
402 KOG0927|consensus 98.2 1.6E-06 3.5E-11 93.2 6.1 60 347-407 74-133 (614)
403 PRK09270 nucleoside triphospha 98.2 1.1E-06 2.4E-11 85.6 4.5 73 374-450 32-108 (229)
404 cd03271 ABC_UvrA_II The excisi 98.2 1.7E-06 3.6E-11 86.6 5.9 90 362-451 8-145 (261)
405 PRK07721 fliI flagellum-specif 98.2 1.9E-06 4.2E-11 92.0 6.6 70 361-431 145-223 (438)
406 PRK10078 ribose 1,5-bisphospho 98.2 2.8E-06 6E-11 80.0 5.9 83 375-461 2-86 (186)
407 KOG0062|consensus 98.2 1.7E-06 3.6E-11 92.6 4.7 51 346-397 78-128 (582)
408 KOG0059|consensus 98.1 4.8E-07 1.1E-11 104.3 0.1 69 25-98 597-667 (885)
409 PRK08149 ATP synthase SpaL; Va 98.1 5.4E-06 1.2E-10 88.3 7.5 71 360-431 137-215 (428)
410 COG4170 SapD ABC-type antimicr 98.1 3.6E-06 7.8E-11 81.5 4.9 95 349-443 4-112 (330)
411 PRK07594 type III secretion sy 98.1 4.6E-06 9.9E-11 88.9 6.2 65 348-413 129-193 (433)
412 cd01136 ATPase_flagellum-secre 98.1 7.1E-06 1.5E-10 84.6 6.8 59 354-413 49-107 (326)
413 TIGR00235 udk uridine kinase. 98.0 1.8E-06 3.9E-11 82.7 2.0 74 373-446 4-78 (207)
414 PRK13537 nodulation ABC transp 98.0 1.1E-06 2.3E-11 89.6 -0.1 56 43-98 52-107 (306)
415 PRK10416 signal recognition pa 98.0 3.8E-06 8.3E-11 86.3 3.9 74 373-446 112-192 (318)
416 PRK06315 type III secretion sy 98.0 1.3E-05 2.7E-10 85.8 7.4 91 361-453 151-256 (442)
417 cd01854 YjeQ_engC YjeQ/EngC. 98.0 4.9E-06 1.1E-10 84.1 3.9 75 375-449 161-243 (287)
418 COG1127 Ttg2A ABC-type transpo 98.0 3.3E-06 7.3E-11 83.1 2.1 55 43-97 53-111 (263)
419 TIGR02546 III_secr_ATP type II 98.0 1.5E-05 3.2E-10 85.0 7.1 83 354-437 125-214 (422)
420 PRK06793 fliI flagellum-specif 97.9 1.5E-05 3.1E-10 85.1 6.8 66 348-414 130-195 (432)
421 cd03280 ABC_MutS2 MutS2 homolo 97.9 8E-06 1.7E-10 77.9 4.2 42 364-405 16-66 (200)
422 cd03282 ABC_MSH4_euk MutS4 hom 97.9 7.9E-06 1.7E-10 78.8 3.6 38 361-398 15-52 (204)
423 COG1126 GlnQ ABC-type polar am 97.9 4.4E-06 9.5E-11 81.2 1.7 49 44-92 48-98 (240)
424 PRK09862 putative ATP-dependen 97.9 9.9E-06 2.2E-10 88.0 4.6 63 351-414 187-249 (506)
425 PRK07960 fliI flagellum-specif 97.9 2.1E-05 4.6E-10 84.1 6.4 70 361-431 162-238 (455)
426 PRK01889 GTPase RsgA; Reviewed 97.8 1.7E-05 3.7E-10 82.6 5.1 69 365-435 185-253 (356)
427 TIGR03497 FliI_clade2 flagella 97.8 2E-05 4.3E-10 83.8 5.4 76 355-431 118-202 (413)
428 TIGR03498 FliI_clade3 flagella 97.8 2.3E-05 5E-10 83.4 5.7 62 352-414 118-179 (418)
429 TIGR03496 FliI_clade1 flagella 97.8 2.9E-05 6.3E-10 82.5 6.3 63 350-413 113-175 (411)
430 PRK09099 type III secretion sy 97.8 2.6E-05 5.7E-10 83.4 5.7 53 360-413 149-201 (441)
431 cd02025 PanK Pantothenate kina 97.8 1.5E-05 3.3E-10 77.6 3.1 70 377-450 1-75 (220)
432 TIGR02788 VirB11 P-type DNA tr 97.7 6.5E-05 1.4E-09 76.7 7.4 79 368-448 137-216 (308)
433 TIGR01026 fliI_yscN ATPase Fli 97.7 2.8E-05 6.1E-10 83.3 4.9 56 357-413 146-201 (440)
434 cd03284 ABC_MutS1 MutS1 homolo 97.7 2E-05 4.4E-10 76.5 3.5 71 361-444 17-87 (216)
435 TIGR03522 GldA_ABC_ATP gliding 97.7 7.2E-06 1.6E-10 83.2 0.1 56 43-98 47-102 (301)
436 COG1137 YhbG ABC-type (unclass 97.7 1E-05 2.2E-10 77.9 1.1 75 17-96 28-104 (243)
437 TIGR01188 drrA daunorubicin re 97.7 8.4E-06 1.8E-10 82.7 0.4 54 44-97 39-92 (302)
438 PRK13536 nodulation factor exp 97.7 6.4E-06 1.4E-10 85.3 -0.5 54 44-97 87-140 (340)
439 PRK08472 fliI flagellum-specif 97.7 3.2E-05 6.9E-10 82.6 4.5 61 354-415 137-197 (434)
440 cd02026 PRK Phosphoribulokinas 97.7 3.2E-05 6.8E-10 77.9 4.2 54 377-431 1-54 (273)
441 PRK00300 gmk guanylate kinase; 97.7 2.5E-05 5.5E-10 74.0 3.1 39 373-413 3-53 (205)
442 cd03275 ABC_SMC1_euk Eukaryoti 97.7 3.5E-05 7.7E-10 75.9 4.0 53 349-409 4-56 (247)
443 PRK05688 fliI flagellum-specif 97.7 4E-05 8.7E-10 82.1 4.5 56 358-414 152-210 (451)
444 cd03243 ABC_MutS_homologs The 97.7 3.7E-05 8E-10 73.3 3.8 32 366-397 20-51 (202)
445 PRK00349 uvrA excinuclease ABC 97.6 8.7E-05 1.9E-09 86.1 7.4 42 348-395 614-655 (943)
446 PRK00098 GTPase RsgA; Reviewed 97.6 6.6E-05 1.4E-09 76.3 5.2 74 374-447 163-244 (298)
447 PLN02318 phosphoribulokinase/u 97.6 6.2E-05 1.3E-09 82.8 5.1 66 376-448 66-131 (656)
448 TIGR02322 phosphon_PhnN phosph 97.6 0.00012 2.6E-09 68.0 6.3 65 375-440 1-82 (179)
449 COG1125 OpuBA ABC-type proline 97.6 2.1E-05 4.6E-10 78.2 1.1 51 44-94 47-98 (309)
450 PRK05922 type III secretion sy 97.6 0.0001 2.2E-09 78.8 6.3 57 356-413 139-195 (434)
451 PRK00635 excinuclease ABC subu 97.6 0.00027 5.8E-09 86.3 10.5 40 348-393 600-639 (1809)
452 cd03287 ABC_MSH3_euk MutS3 hom 97.6 5.4E-05 1.2E-09 74.0 3.8 48 362-409 18-66 (222)
453 TIGR00767 rho transcription te 97.6 0.0001 2.3E-09 77.8 6.0 55 347-401 129-194 (415)
454 cd03266 ABC_NatA_sodium_export 97.5 2.5E-05 5.4E-10 74.8 0.5 54 43-96 50-103 (218)
455 COG3839 MalK ABC-type sugar tr 97.5 2.1E-05 4.5E-10 81.4 -0.5 54 44-98 49-102 (338)
456 cd00879 Sar1 Sar1 subfamily. 97.5 7.9E-05 1.7E-09 69.3 3.2 49 364-413 9-65 (190)
457 PRK14723 flhF flagellar biosyn 97.4 0.00013 2.8E-09 82.6 5.2 49 364-412 174-224 (767)
458 PLN02796 D-glycerate 3-kinase 97.4 4.2E-05 9.1E-10 79.3 1.1 52 363-414 80-142 (347)
459 TIGR01186 proV glycine betaine 97.4 3E-05 6.6E-10 81.1 -0.1 53 44-96 39-96 (363)
460 TIGR01288 nodI ATP-binding ABC 97.4 3.2E-05 7E-10 78.5 -0.2 53 44-96 50-102 (303)
461 TIGR02524 dot_icm_DotB Dot/Icm 97.4 0.00037 8.1E-09 72.8 7.7 60 373-432 132-194 (358)
462 TIGR00960 3a0501s02 Type II (G 97.4 5.5E-05 1.2E-09 72.5 1.3 52 44-95 49-104 (216)
463 PF13555 AAA_29: P-loop contai 97.4 0.00012 2.7E-09 57.7 3.0 38 365-402 12-50 (62)
464 TIGR00101 ureG urease accessor 97.4 0.00012 2.6E-09 70.2 3.6 56 377-433 3-59 (199)
465 TIGR00606 rad50 rad50. This fa 97.4 0.0002 4.3E-09 86.2 5.8 54 375-429 28-86 (1311)
466 cd03268 ABC_BcrA_bacitracin_re 97.4 5.3E-05 1.1E-09 72.2 0.7 53 43-96 45-97 (208)
467 PRK11545 gntK gluconate kinase 97.4 4.2E-05 9.1E-10 70.9 0.0 62 381-447 1-63 (163)
468 PRK06820 type III secretion sy 97.4 0.00025 5.3E-09 76.0 5.7 58 354-412 143-200 (440)
469 PRK03846 adenylylsulfate kinas 97.4 0.00013 2.8E-09 69.4 3.2 56 373-431 22-78 (198)
470 PRK08972 fliI flagellum-specif 97.3 0.00028 6.2E-09 75.4 6.0 41 361-402 149-189 (444)
471 PRK08533 flagellar accessory p 97.3 0.00011 2.4E-09 72.0 2.2 54 349-412 8-62 (230)
472 TIGR02314 ABC_MetN D-methionin 97.3 6.4E-05 1.4E-09 78.1 0.4 53 44-96 51-107 (343)
473 cd03285 ABC_MSH2_euk MutS2 hom 97.3 0.00028 6E-09 68.9 4.8 36 360-395 15-50 (222)
474 cd03265 ABC_DrrA DrrA is the A 97.3 6.9E-05 1.5E-09 72.1 0.5 53 44-96 46-98 (220)
475 PRK13540 cytochrome c biogenes 97.3 8.2E-05 1.8E-09 70.7 1.0 52 44-95 47-98 (200)
476 PRK14722 flhF flagellar biosyn 97.3 0.00018 4E-09 75.5 3.6 38 362-399 124-161 (374)
477 PRK04863 mukB cell division pr 97.3 0.00026 5.7E-09 85.4 5.2 47 365-412 18-64 (1486)
478 cd03261 ABC_Org_Solvent_Resist 97.3 7.8E-05 1.7E-09 72.4 0.5 52 44-95 46-101 (235)
479 cd04155 Arl3 Arl3 subfamily. 97.3 0.00034 7.3E-09 63.7 4.6 38 376-413 15-60 (173)
480 PRK06936 type III secretion sy 97.3 0.00044 9.5E-09 74.0 6.1 51 361-412 149-199 (439)
481 COG4619 ABC-type uncharacteriz 97.3 9.8E-05 2.1E-09 69.6 1.1 56 39-95 44-100 (223)
482 cd03258 ABC_MetN_methionine_tr 97.3 8.9E-05 1.9E-09 71.8 0.8 52 44-95 51-106 (233)
483 PRK00635 excinuclease ABC subu 97.2 0.00024 5.3E-09 86.6 4.7 54 351-409 938-991 (1809)
484 TIGR03265 PhnT2 putative 2-ami 97.2 5.7E-05 1.2E-09 78.7 -0.6 53 44-97 50-102 (353)
485 cd03263 ABC_subfamily_A The AB 97.2 8.9E-05 1.9E-09 71.1 0.7 53 44-96 48-100 (220)
486 PRK09493 glnQ glutamine ABC tr 97.2 8.7E-05 1.9E-09 72.3 0.6 52 44-95 47-101 (240)
487 cd03264 ABC_drug_resistance_li 97.2 0.0001 2.2E-09 70.3 1.0 52 44-95 45-96 (211)
488 PRK11607 potG putrescine trans 97.2 6.1E-05 1.3E-09 79.2 -0.7 53 44-97 65-117 (377)
489 TIGR00368 Mg chelatase-related 97.2 0.00016 3.4E-09 78.8 2.4 55 360-414 196-250 (499)
490 cd03295 ABC_OpuCA_Osmoprotecti 97.2 8.3E-05 1.8E-09 72.6 0.3 53 44-96 47-100 (242)
491 cd03269 ABC_putative_ATPase Th 97.2 8.7E-05 1.9E-09 70.8 0.4 50 44-96 46-95 (210)
492 TIGR00630 uvra excinuclease AB 97.2 0.00029 6.2E-09 81.8 4.6 40 348-393 612-651 (924)
493 PRK11153 metN DL-methionine tr 97.2 9E-05 2E-09 76.8 0.4 53 44-96 51-107 (343)
494 COG3842 PotA ABC-type spermidi 97.2 8.2E-05 1.8E-09 77.4 0.1 53 44-97 51-103 (352)
495 cd03292 ABC_FtsE_transporter F 97.2 0.0001 2.2E-09 70.4 0.5 53 44-96 47-103 (214)
496 PRK13538 cytochrome c biogenes 97.2 9.7E-05 2.1E-09 70.4 0.3 53 44-96 47-99 (204)
497 TIGR02315 ABC_phnC phosphonate 97.2 0.00015 3.3E-09 70.6 1.6 52 43-94 47-102 (243)
498 cd03256 ABC_PhnC_transporter A 97.2 0.00012 2.7E-09 71.1 0.8 51 44-94 47-101 (241)
499 PRK11432 fbpC ferric transport 97.2 7.6E-05 1.6E-09 77.7 -0.7 53 44-97 52-104 (351)
500 PRK11650 ugpC glycerol-3-phosp 97.2 7.6E-05 1.7E-09 77.8 -0.7 53 44-97 50-102 (356)
No 1
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=2.7e-56 Score=530.80 Aligned_cols=374 Identities=31% Similarity=0.538 Sum_probs=286.5
Q ss_pred HHhhCccCCcccccchhccccccceeeeeehhhhc---ccchhhhccccccccce-----------------eEeeecce
Q psy7411 70 RESLGLCPQYDLLFEELTVEDHLQFFAKWRITYSS---LLRNWTIAWSPYHPELF-----------------NVMSRASF 129 (474)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~---~~~~~~~~~~~~~~~~f-----------------~~~~~~~~ 129 (474)
+.-+.++--=.++|+...+..+++.+++.+++++| ++++|.+ |+.|+...| .++.++++
T Consensus 652 ~~~~pl~~~la~~~~~~~lv~~iV~EKE~rlKE~MkiMGL~~~~~-w~sWfi~~~~~~~i~~~l~~~il~~~~~~~~s~~ 730 (2272)
T TIGR01257 652 NRCFPIFMVLAWIYSVSMTVKSIVLEKELRLKETLKNQGVSNAVI-WCTWFLDSFSIMSMSIFLLTIFIMHGRILHYSDP 730 (2272)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHH-HHHHHHHHHHHHHHHHHHHHHHHhhCceeecCCh
Confidence 33333333344555555555555555555555555 4445544 444443322 34445555
Q ss_pred EEEEEEeecccchhhHHHHHHHHHHhhh--cccc-hhHHHHHHHHHHHHHHhHHhhcccccccchhhhhhhhccchhHHH
Q psy7411 130 VIGYQLFDDDIAGREHLSRQVKSSCFLV--VFSG-STAATVGGLVWFGTYSPYIILQPKYSLMTFQQKLYTCLFSNSAMG 206 (474)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~I~f~fli--fFsk-~~A~~~~~li~~~~~~p~~~~~~~~~~~~~~~k~l~sL~p~~af~ 206 (474)
.+.|.++ ..|++++|+||||+ ||+| ++|+++++++||++++|+.++...++.++...++++||+||+||+
T Consensus 731 ~~lfl~~-------~~y~~s~I~~~fliS~fFska~~A~~~~~li~f~~~lp~~~~~~~~~~~~~~~~~~~sL~sp~af~ 803 (2272)
T TIGR01257 731 FILFLFL-------LAFSTATIMQCFLLSTFFSKASLAAACSGVIYFTLYLPHILCFAWQDRMTADLKTAVSLLSPVAFG 803 (2272)
T ss_pred HHHHHHH-------HHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhcccccCHHHHHHHHhcCHHHHH
Confidence 4444333 24999999999999 9999 999999999999999999887777777888899999999999999
Q ss_pred HHHHHHHHhcccCCcccccCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCcccccccccccCC
Q psy7411 207 YAFQNLLMYEGIGEGVQWNNVWKSVTPDDELCLGHILSMMAIMGVIHLVAALYIEAVWPGSTGLPLPWYYPIQATYWLEG 286 (474)
Q Consensus 207 ~g~~~l~~~E~~g~G~~w~nl~~~~~~~d~~s~~~~l~~L~~d~ily~lL~~Yld~V~Pg~yGi~~pw~F~~~~syW~~~ 286 (474)
+|+.+++.+|.++.|+||+|+++++..+|+++++.+++||++|+++|++|+||+|+|+||+||+|||||||++|+||+++
T Consensus 804 ~g~~~i~~~e~~~~G~~w~n~~~~~~~~d~~s~~~~~~ml~~d~~lY~lL~~Yld~V~PgeyG~~kpw~F~~~~syW~~~ 883 (2272)
T TIGR01257 804 FGTEYLVRFEEQGLGLQWSNIGNSPLEGDEFSFLLSMKMMLLDAALYGLLAWYLDQVFPGDYGTPLPWYFLLQESYWLGG 883 (2272)
T ss_pred HHHHHHHHHhhhCCCcccccccccccCCCCccHHHHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCcccccchhhhcCC
Confidence 99999999999999999999999888889999999999999999999999999999999999999999999999999875
Q ss_pred CcccccccccccCcccccchhhhhhhhhhhhhcCCCCCCCcccccccccccccCcCccccccEEEEeeEEEEc-CCceee
Q psy7411 287 EVGFCLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSKDIVNASGIQLRGLTKIYK-TGKKAV 365 (474)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~isl~~~~~~i~~~~g~~~~~kst~~~~i~g~~~~~~~~~~~~~I~i~~Lsk~y~-~~~~aL 365 (474)
. .|..+... .....+... .+..... .+....+.. +|+++.+ ...+++++||+|.|+ +++.++
T Consensus 884 ~--~~~~~~~~-~~~~~~~~~-----~~~~~~~-~~~~~~~~~------~E~~~~~--~~~~L~I~nLsK~y~~~~k~aL 946 (2272)
T TIGR01257 884 E--GCSTREER-ALEKTEPLT-----EEMEDPE-HPEGINDSF------FERELPG--LVPGVCVKNLVKIFEPSGRPAV 946 (2272)
T ss_pred c--cccccccc-ccccccccc-----ccccccc-ccccccccc------cccccCC--CCceEEEEeEEEEecCCCceEE
Confidence 1 12111110 000000000 0000000 000000111 4444444 456799999999994 357899
Q ss_pred eeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEEEcCCCCCCCCCCHHHHHHH
Q psy7411 366 DNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQF 445 (474)
Q Consensus 366 ~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~~Q~~~L~~~LTV~E~L~~ 445 (474)
+++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.....++|+.+|+|||++.+++.+||+||+.+
T Consensus 947 ~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f 1026 (2272)
T TIGR01257 947 DRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHILF 1026 (2272)
T ss_pred EeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999976666778899999999999999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHhHh
Q psy7411 446 FAKGKEFNGITYGRALLLMMSYV 468 (474)
Q Consensus 446 ~~~lkg~~~~~~~~~l~~~~~~~ 468 (474)
+++++|.+.++.++++++++..+
T Consensus 1027 ~~~lkg~~~~~~~~~v~~lL~~v 1049 (2272)
T TIGR01257 1027 YAQLKGRSWEEAQLEMEAMLEDT 1049 (2272)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHc
Confidence 99999988777777788877654
No 2
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.94 E-value=2.9e-25 Score=266.40 Aligned_cols=271 Identities=22% Similarity=0.279 Sum_probs=180.0
Q ss_pred HHHHHHHHHHhhh--cccc-hhHHHHHHHHHHH-HHHhHH---hhcccc-----cccchhhhhhhhccchhHHHHHHHHH
Q psy7411 145 HLSRQVKSSCFLV--VFSG-STAATVGGLVWFG-TYSPYI---ILQPKY-----SLMTFQQKLYTCLFSNSAMGYAFQNL 212 (474)
Q Consensus 145 ~~~~~~I~f~fli--fFsk-~~A~~~~~li~~~-~~~p~~---~~~~~~-----~~~~~~~k~l~sL~p~~af~~g~~~l 212 (474)
.|+.++|.+++++ +|++ ..|-+...++.++ .++... ++.... .......++++.++|+.+++.|+..+
T Consensus 1769 lyG~a~ip~tYl~SflF~~~~~A~~~~~~in~~~G~~~~i~~~il~~~~~~~~~~~~~~~l~~if~i~P~f~lg~gl~~l 1848 (2272)
T TIGR01257 1769 LYGWAVIPMMYPASFLFDVPSTAYVALSCANLFIGINSSAITFVLELFENNRTLLRFNAMLRKLLIVFPHFCLGRGLIDL 1848 (2272)
T ss_pred HHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHeeCchhhhHHHHHHH
Confidence 4889999999999 7887 6664444333322 222111 111111 11234567888899999999999888
Q ss_pred HHhcccC-----CcccccCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCcccccccccccCCC
Q psy7411 213 LMYEGIG-----EGVQWNNVWKSVTPDDELCLGHILSMMAIMGVIHLVAALYIEAVWPGSTGLPLPWYYPIQATYWLEGE 287 (474)
Q Consensus 213 ~~~E~~g-----~G~~w~nl~~~~~~~d~~s~~~~l~~L~~d~ily~lL~~Yld~V~Pg~yGi~~pw~F~~~~syW~~~~ 287 (474)
+....-. .|... ...+.++ ...+..+++|++.+++|+++.+++|.-.- +++ |.+.
T Consensus 1849 ~~~~~~~~~~~~~~~~~--~~~~~~~---~~~g~~ll~m~~~~iv~flLl~~ie~~~~-----~~~---------~~~~- 1908 (2272)
T TIGR01257 1849 ALSQAVTDVYAQFGEEH--SANPFQW---DLIGKNLVAMAVEGVVYFLLTLLIQHHFF-----LSR---------WIAE- 1908 (2272)
T ss_pred HHhHHHHHHHHhhcccc--cCCccch---hhccHHHHHHHHHHHHHHHHHHHHHhhhh-----hhh---------hccc-
Confidence 7643210 11000 0011111 12456788999999999999999995210 001 1111
Q ss_pred cccccccccccCcccccchhhhhhhhhhhhhcCCCCCCCcccccccccccccCcCccccccEEEEeeEEEEcC-Cceeee
Q psy7411 288 VGFCLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSKDIVNASGIQLRGLTKIYKT-GKKAVD 366 (474)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~isl~~~~~~i~~~~g~~~~~kst~~~~i~g~~~~~~~~~~~~~I~i~~Lsk~y~~-~~~aL~ 366 (474)
... ....+.+-|+..... +. ....+ ....++++||+|.|++ ++.||+
T Consensus 1909 -----~~~-----~~~~~eD~DV~~Er~------------rV------~~~~~----~~~~L~v~nLsK~Y~~~~~~aL~ 1956 (2272)
T TIGR01257 1909 -----PAK-----EPIFDEDDDVAEERQ------------RI------ISGGN----KTDILRLNELTKVYSGTSSPAVD 1956 (2272)
T ss_pred -----cCc-----CcCCCchhHHHHHHH------------HH------hccCC----CCceEEEEEEEEEECCCCceEEE
Confidence 000 000000111111100 00 00000 2245899999999954 367999
Q ss_pred eeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q psy7411 367 NLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFF 446 (474)
Q Consensus 367 ~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~~Q~~~L~~~LTV~E~L~~~ 446 (474)
++||++++||++||+||||||||||+|+|+|+.+|++|+|.++|+++.+...+.|+++|||||++.+++.+|++||+.++
T Consensus 1957 ~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~ 2036 (2272)
T TIGR01257 1957 RLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLY 2036 (2272)
T ss_pred eeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEEEEeccccCCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998765566788899999999999999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHhH
Q psy7411 447 AKGKEFNGITYGRALLLMMSY 467 (474)
Q Consensus 447 ~~lkg~~~~~~~~~l~~~~~~ 467 (474)
++++|.+++++++++++++..
T Consensus 2037 a~l~g~~~~~~~~~v~~lLe~ 2057 (2272)
T TIGR01257 2037 ARLRGVPAEEIEKVANWSIQS 2057 (2272)
T ss_pred HHhcCCCHHHHHHHHHHHHHH
Confidence 999998877766666665543
No 3
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.93 E-value=2.1e-25 Score=228.82 Aligned_cols=120 Identities=28% Similarity=0.475 Sum_probs=109.1
Q ss_pred ccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEE
Q psy7411 347 SGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGL 426 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~ 426 (474)
..++++|++|.| ++..+|+|+||++++||+++|+|||||||||+||||+|+..|++|+|.++|+++.. ...-+|.+|+
T Consensus 4 ~~l~i~~v~k~y-g~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~-lpp~kR~ig~ 81 (352)
T COG3842 4 PALEIRNVSKSF-GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITD-VPPEKRPIGM 81 (352)
T ss_pred ceEEEEeeeeec-CCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCC-CChhhcccce
Confidence 468999999999 57899999999999999999999999999999999999999999999999999965 3344778999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHhcCC-CCHHHHHHHHHHHHhHh
Q psy7411 427 CPQYDLLFEELTVEDHLQFFAKGKE-FNGITYGRALLLMMSYV 468 (474)
Q Consensus 427 ~~Q~~~L~~~LTV~E~L~~~~~lkg-~~~~~~~~~l~~~~~~~ 468 (474)
|||+..|||+|||+||++|..+.++ .+++++.+++++|+..|
T Consensus 82 VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV 124 (352)
T COG3842 82 VFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELV 124 (352)
T ss_pred eecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHc
Confidence 9999999999999999999988655 55677999999999865
No 4
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.92 E-value=3.2e-25 Score=216.21 Aligned_cols=120 Identities=33% Similarity=0.463 Sum_probs=113.5
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chHHhhcceEE
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMGKVRESLGL 426 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~~ir~~IG~ 426 (474)
+++++|++|.| +++.|++++||++++||+++++||+||||||+|||+.+|.+||+|+|.++|+++.. +..++|++|||
T Consensus 1 MI~~~nvsk~y-~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGY 79 (309)
T COG1125 1 MIEFENVSKRY-GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGY 79 (309)
T ss_pred Cceeeeeehhc-CCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhh
Confidence 36899999999 57899999999999999999999999999999999999999999999999999985 56788999999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhHh
Q psy7411 427 CPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSYV 468 (474)
Q Consensus 427 ~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~~ 468 (474)
+.|...|||++||.||+.+...++|.++++++++.+|.+..|
T Consensus 80 viQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lv 121 (309)
T COG1125 80 VIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLV 121 (309)
T ss_pred hhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999988754
No 5
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.92 E-value=1.2e-24 Score=222.29 Aligned_cols=120 Identities=25% Similarity=0.384 Sum_probs=108.8
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEEE
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLC 427 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~ 427 (474)
.++++|++|.|+ +..+++++||++++||+++|+||||||||||||+|+||.+||+|+|.++|+++... ...+|++|||
T Consensus 3 ~i~l~~v~K~yg-~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l-~P~~R~iamV 80 (338)
T COG3839 3 ELELKNVRKSFG-SFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDL-PPEKRGIAMV 80 (338)
T ss_pred EEEEeeeEEEcC-CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCC-ChhHCCEEEE
Confidence 479999999994 33399999999999999999999999999999999999999999999999999653 3345789999
Q ss_pred cCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhHhh
Q psy7411 428 PQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSYVW 469 (474)
Q Consensus 428 ~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~~~ 469 (474)
||+..|||+|||+||+.|..+.+|.+++++++++.+...-++
T Consensus 81 FQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~ 122 (338)
T COG3839 81 FQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLG 122 (338)
T ss_pred eCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999988766554
No 6
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.92 E-value=2.3e-25 Score=210.91 Aligned_cols=121 Identities=30% Similarity=0.453 Sum_probs=114.4
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEEE
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLC 427 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~ 427 (474)
++++.+++|+|+....|++|+||++++||++|++|+|||||||++|||++|+.|++|.++++|.|..++...+|++||++
T Consensus 1 Ml~v~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl 80 (245)
T COG4555 1 MLEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVL 80 (245)
T ss_pred CeeeeehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhccee
Confidence 36889999999654459999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhHh
Q psy7411 428 PQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSYV 468 (474)
Q Consensus 428 ~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~~ 468 (474)
+-...++..||++|||.|+++++|+++.++++++++|+.++
T Consensus 81 ~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l 121 (245)
T COG4555 81 FGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRL 121 (245)
T ss_pred cCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHh
Confidence 98889999999999999999999999999999999998765
No 7
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.91 E-value=1.8e-24 Score=206.93 Aligned_cols=120 Identities=28% Similarity=0.456 Sum_probs=110.3
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc--chHHhhcceE
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY--EMGKVRESLG 425 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~--~~~~ir~~IG 425 (474)
.++++|++|.| +..++|+++|+++.+||+++++||+||||||++|||.||.+|++|+|.++|+++.. +..++|+++|
T Consensus 2 mi~i~~l~K~f-g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vG 80 (240)
T COG1126 2 MIEIKNLSKSF-GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVG 80 (240)
T ss_pred eEEEEeeeEEe-CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcC
Confidence 47899999999 67899999999999999999999999999999999999999999999999988753 5778899999
Q ss_pred EEcCCCCCCCCCCHHHHHHHH-HhcCCCCHHHHHHHHHHHHhHh
Q psy7411 426 LCPQYDLLFEELTVEDHLQFF-AKGKEFNGITYGRALLLMMSYV 468 (474)
Q Consensus 426 ~~~Q~~~L~~~LTV~E~L~~~-~~lkg~~~~~~~~~l~~~~~~~ 468 (474)
+|+|+.+|||++||.||+.+. -..+|.++++++++-.+.+.+|
T Consensus 81 mVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~V 124 (240)
T COG1126 81 MVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKV 124 (240)
T ss_pred eecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHc
Confidence 999999999999999999986 4678999999988888777765
No 8
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.91 E-value=4.6e-24 Score=215.28 Aligned_cols=120 Identities=37% Similarity=0.549 Sum_probs=107.3
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEEE
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLC 427 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~ 427 (474)
.++++|++|.|++++.+|+++||++++||++||+||||||||||+|+|+|+.+|++|+|.++|+++..+..++|+++||+
T Consensus 4 ~i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~ 83 (293)
T COG1131 4 VIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYV 83 (293)
T ss_pred eeeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEE
Confidence 46789999999425899999999999999999999999999999999999999999999999999987777889999999
Q ss_pred cCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhH
Q psy7411 428 PQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSY 467 (474)
Q Consensus 428 ~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~ 467 (474)
||++.+++.+|++||+.+++.++|.+.+...+++++.+..
T Consensus 84 ~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~ 123 (293)
T COG1131 84 PQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLEL 123 (293)
T ss_pred ccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHH
Confidence 9999999999999999999999998754445555555543
No 9
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.90 E-value=4.3e-24 Score=207.27 Aligned_cols=117 Identities=32% Similarity=0.550 Sum_probs=110.0
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEEE
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLC 427 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~ 427 (474)
++++++++|+| +.+.||+|+||++++|+++|++|||||||||++|||.|+++||+|+|.++|.++.. ..+.+|||.
T Consensus 2 ~L~ie~vtK~F-g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~---~~~~rIGyL 77 (300)
T COG4152 2 ALEIEGVTKSF-GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ---EIKNRIGYL 77 (300)
T ss_pred ceEEecchhcc-CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh---hhhhhcccC
Confidence 47899999999 67899999999999999999999999999999999999999999999999999864 456679999
Q ss_pred cCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhHh
Q psy7411 428 PQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSYV 468 (474)
Q Consensus 428 ~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~~ 468 (474)
|.+-.|++.+||.|.+.|++++||+++++++++++.-+.++
T Consensus 78 PEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~ 118 (300)
T COG4152 78 PEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERL 118 (300)
T ss_pred hhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999888765
No 10
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.90 E-value=4.3e-23 Score=209.15 Aligned_cols=120 Identities=29% Similarity=0.471 Sum_probs=107.9
Q ss_pred ccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEE
Q psy7411 347 SGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGL 426 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~ 426 (474)
..++++||+|.| +++.+++++||++++||++||+||||||||||+++|+|+.+|++|++.++|+++.....+.|+++||
T Consensus 6 ~~i~i~~l~k~~-~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~ 84 (306)
T PRK13537 6 APIDFRNVEKRY-GDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGV 84 (306)
T ss_pred ceEEEEeEEEEE-CCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEE
Confidence 468999999999 5678999999999999999999999999999999999999999999999999987655567888999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhH
Q psy7411 427 CPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSY 467 (474)
Q Consensus 427 ~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~ 467 (474)
|||++.+++.+|++||+.++++.+|.+..+..++++++++.
T Consensus 85 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~ 125 (306)
T PRK13537 85 VPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEF 125 (306)
T ss_pred EeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999988888777666666666654
No 11
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.90 E-value=1.9e-23 Score=208.62 Aligned_cols=121 Identities=26% Similarity=0.398 Sum_probs=112.0
Q ss_pred cEEEEeeEEEEcC----CceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc----chHH
Q psy7411 348 GIQLRGLTKIYKT----GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY----EMGK 419 (474)
Q Consensus 348 ~I~i~~Lsk~y~~----~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~----~~~~ 419 (474)
+|++++++|.|.. ...|++|+||+|++||++|++|++|||||||+|++.+|.+|++|+|.++|+++.. ..++
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~ 80 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQ 80 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHH
Confidence 3789999999953 2579999999999999999999999999999999999999999999999998863 5677
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhHh
Q psy7411 420 VRESLGLCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSYV 468 (474)
Q Consensus 420 ir~~IG~~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~~ 468 (474)
.|++|||+||+++|+...||.||++|..++.|.+++++++++.+++..|
T Consensus 81 ~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelV 129 (339)
T COG1135 81 LRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELV 129 (339)
T ss_pred HHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHc
Confidence 8999999999999999999999999999999999999999999998764
No 12
>KOG0059|consensus
Probab=99.90 E-value=1.6e-23 Score=238.87 Aligned_cols=121 Identities=42% Similarity=0.666 Sum_probs=110.4
Q ss_pred ccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc--chHHhhcce
Q psy7411 347 SGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY--EMGKVRESL 424 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~--~~~~ir~~I 424 (474)
..+.+++|+|.|++.+.|++++|+.+++|||+|++|||||||||+++|++|..+||+|++.++|+++.. ...++++++
T Consensus 563 ~~~~~~~L~k~y~~~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~i 642 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQL 642 (885)
T ss_pred ceEEEcceeeeecchhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhc
Confidence 467899999999533339999999999999999999999999999999999999999999999999986 444589999
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhH
Q psy7411 425 GLCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSY 467 (474)
Q Consensus 425 G~~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~ 467 (474)
|||||++.+++.+|.+||+.++++++|+++.++.+.++..+..
T Consensus 643 GyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~ 685 (885)
T KOG0059|consen 643 GYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRL 685 (885)
T ss_pred ccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999888877653
No 13
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.88 E-value=3.5e-23 Score=194.57 Aligned_cols=121 Identities=24% Similarity=0.365 Sum_probs=113.2
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc----chHHhhcc
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY----EMGKVRES 423 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~----~~~~ir~~ 423 (474)
+|+++|++|.|+++++||+|+||++++||++-++||+||||||++|+|.+..+||+|+|.++|+|+.+ +..-+|++
T Consensus 1 mI~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~ 80 (223)
T COG2884 1 MIRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ 80 (223)
T ss_pred CeeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence 37899999999877779999999999999999999999999999999999999999999999999863 45568999
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhHh
Q psy7411 424 LGLCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSYV 468 (474)
Q Consensus 424 IG~~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~~ 468 (474)
||+|+|++-|.+++||+||++|..++.|.+++++++++.+.+..|
T Consensus 81 IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~V 125 (223)
T COG2884 81 IGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLV 125 (223)
T ss_pred eeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999988755
No 14
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.88 E-value=3.3e-22 Score=205.69 Aligned_cols=121 Identities=28% Similarity=0.427 Sum_probs=106.2
Q ss_pred cccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceE
Q psy7411 346 ASGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLG 425 (474)
Q Consensus 346 ~~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG 425 (474)
...++++||+|.| +++.+|+++||++++||++||+||||||||||+++|+|+++|++|++.++|+++.....+.++.+|
T Consensus 39 ~~~i~i~nl~k~y-~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig 117 (340)
T PRK13536 39 TVAIDLAGVSKSY-GDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIG 117 (340)
T ss_pred ceeEEEEEEEEEE-CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEE
Confidence 3469999999999 567899999999999999999999999999999999999999999999999998755556788899
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhH
Q psy7411 426 LCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSY 467 (474)
Q Consensus 426 ~~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~ 467 (474)
|+||++.+++.+|+.||+.+++..++.+..+..+++++++.+
T Consensus 118 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~ 159 (340)
T PRK13536 118 VVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEF 159 (340)
T ss_pred EEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 999999999999999999998888877665555555555543
No 15
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.88 E-value=1.4e-22 Score=197.80 Aligned_cols=116 Identities=24% Similarity=0.387 Sum_probs=105.6
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEEE
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLC 427 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~ 427 (474)
.+++++++|.| +...+++|+||++.+||+++++||+|||||||+|+++||.+|++|+|.++|+.+. .....+|||
T Consensus 3 ~l~i~~v~~~f-~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~----~p~~~~~~v 77 (248)
T COG1116 3 LLEIEGVSKSF-GGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVT----GPGPDIGYV 77 (248)
T ss_pred eEEEEeeEEEe-CceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccC----CCCCCEEEE
Confidence 47899999999 5589999999999999999999999999999999999999999999999999883 235668999
Q ss_pred cCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhHh
Q psy7411 428 PQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSYV 468 (474)
Q Consensus 428 ~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~~ 468 (474)
+|++.|+|.+||+||+.+.....|.++++..++.++++..|
T Consensus 78 FQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~V 118 (248)
T COG1116 78 FQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELV 118 (248)
T ss_pred eccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHc
Confidence 99999999999999999999999988888877888877654
No 16
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.88 E-value=8.5e-22 Score=199.01 Aligned_cols=118 Identities=31% Similarity=0.531 Sum_probs=104.1
Q ss_pred EEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEEEc
Q psy7411 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCP 428 (474)
Q Consensus 349 I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~~ 428 (474)
++++|++|+| +++.+++++||++++||++||+||||||||||+++|+|+.+|++|+|.++|+++.....++++.+||+|
T Consensus 3 l~~~~l~~~~-~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~ 81 (301)
T TIGR03522 3 IRVSSLTKLY-GTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLP 81 (301)
T ss_pred EEEEEEEEEE-CCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEec
Confidence 6899999999 567899999999999999999999999999999999999999999999999998765556778899999
Q ss_pred CCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhH
Q psy7411 429 QYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSY 467 (474)
Q Consensus 429 Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~ 467 (474)
|++.+++.+|+.||+.+.++++|.+.++..+++++.+..
T Consensus 82 q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~ 120 (301)
T TIGR03522 82 EHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIEL 120 (301)
T ss_pred CCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 999999999999999999888887765555555555443
No 17
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.87 E-value=2.1e-22 Score=195.31 Aligned_cols=117 Identities=31% Similarity=0.514 Sum_probs=103.3
Q ss_pred cccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc----chHHhh
Q psy7411 346 ASGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY----EMGKVR 421 (474)
Q Consensus 346 ~~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~----~~~~ir 421 (474)
...++++++++.| +++.+++++||++++||+++++||+|+|||||+|.+.|+.+|++|+|.++|+++.. +..++|
T Consensus 6 ~~~I~vr~v~~~f-G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir 84 (263)
T COG1127 6 EPLIEVRGVTKSF-GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIR 84 (263)
T ss_pred cceEEEeeeeeec-CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHH
Confidence 3568999999999 67899999999999999999999999999999999999999999999999999874 344688
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHHhcC-CCCHHHHHHHHHH
Q psy7411 422 ESLGLCPQYDLLFEELTVEDHLQFFAKGK-EFNGITYGRALLL 463 (474)
Q Consensus 422 ~~IG~~~Q~~~L~~~LTV~E~L~~~~~lk-g~~~~~~~~~l~~ 463 (474)
+++|+++|+..||..+||+||+.|..+-+ +++++.+++.+.+
T Consensus 85 ~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~ 127 (263)
T COG1127 85 KRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLM 127 (263)
T ss_pred hheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHH
Confidence 99999999999999999999999976654 4666666655444
No 18
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.87 E-value=1.3e-21 Score=189.97 Aligned_cols=119 Identities=29% Similarity=0.450 Sum_probs=101.8
Q ss_pred EEEEeeEEEEcCC---ceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc----chHHhh
Q psy7411 349 IQLRGLTKIYKTG---KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY----EMGKVR 421 (474)
Q Consensus 349 I~i~~Lsk~y~~~---~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~----~~~~ir 421 (474)
++++|++|.|+.+ .++|+++||++++||+++++||+||||||||++|.|+++||+|.+.++|+++.. ...+.|
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 5689999999532 479999999999999999999999999999999999999999999999999873 233444
Q ss_pred -cceEEEcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhH
Q psy7411 422 -ESLGLCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSY 467 (474)
Q Consensus 422 -~~IG~~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~ 467 (474)
+++|+++|++.|.+++||.||+.+...+.+.+..+..++.+++...
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~ 128 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEV 128 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHh
Confidence 5699999999999999999999998888887765556666665554
No 19
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.87 E-value=8.9e-23 Score=193.23 Aligned_cols=118 Identities=32% Similarity=0.472 Sum_probs=102.5
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcc--hHHhhcceE
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYE--MGKVRESLG 425 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~--~~~ir~~IG 425 (474)
.+.++||.|+| +++++++++||++++||++||+|||||||||.+.|++|+.+|++|+|.++|.|+... ..+.|..+|
T Consensus 4 ~L~a~~l~K~y-~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGig 82 (243)
T COG1137 4 TLVAENLAKSY-KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIG 82 (243)
T ss_pred EEEehhhhHhh-CCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcc
Confidence 46889999999 678999999999999999999999999999999999999999999999999999853 344566799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHhcCCCCHH--HHHHHHHHHHh
Q psy7411 426 LCPQYDLLFEELTVEDHLQFFAKGKEFNGI--TYGRALLLMMS 466 (474)
Q Consensus 426 ~~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~--~~~~~l~~~~~ 466 (474)
|+||++..|..|||+||+.....++....+ +-+.++++++.
T Consensus 83 YLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ 125 (243)
T COG1137 83 YLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLE 125 (243)
T ss_pred cccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHH
Confidence 999999999999999999998888765444 34445666664
No 20
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.87 E-value=2.2e-21 Score=200.61 Aligned_cols=119 Identities=24% Similarity=0.399 Sum_probs=105.7
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEEE
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLC 427 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~ 427 (474)
.++++|++|.| +++.+++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.... ..++.+|||
T Consensus 4 ~l~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~-~~~r~ig~v 81 (353)
T TIGR03265 4 YLSIDNIRKRF-GAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLP-PQKRDYGIV 81 (353)
T ss_pred EEEEEEEEEEe-CCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCC-HHHCCEEEE
Confidence 58999999999 5678999999999999999999999999999999999999999999999999986432 236779999
Q ss_pred cCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhHh
Q psy7411 428 PQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSYV 468 (474)
Q Consensus 428 ~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~~ 468 (474)
+|+..+|+++||+||+.+..+.++.++++..+++++++..+
T Consensus 82 ~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l 122 (353)
T TIGR03265 82 FQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLV 122 (353)
T ss_pred eCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc
Confidence 99999999999999999988777777777777777777654
No 21
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.86 E-value=2.4e-21 Score=186.17 Aligned_cols=118 Identities=34% Similarity=0.444 Sum_probs=101.5
Q ss_pred EEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEEEc
Q psy7411 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCP 428 (474)
Q Consensus 349 I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~~ 428 (474)
++++|+++.| +++++++++||++++||+++|+||||||||||+++|+|+.+|++|++.++|+++.....+.++.++|+|
T Consensus 1 i~~~~~~~~~-~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (220)
T cd03265 1 IEVENLVKKY-GDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVF 79 (220)
T ss_pred CEEEEEEEEE-CCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEec
Confidence 4689999999 457899999999999999999999999999999999999999999999999987543345567899999
Q ss_pred CCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhH
Q psy7411 429 QYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSY 467 (474)
Q Consensus 429 Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~ 467 (474)
|++.+++.+|++||+.+....++.+.++..+++++++..
T Consensus 80 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 118 (220)
T cd03265 80 QDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDF 118 (220)
T ss_pred CCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 999999999999999987766666655555666666654
No 22
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.86 E-value=2.6e-21 Score=195.52 Aligned_cols=119 Identities=30% Similarity=0.463 Sum_probs=102.9
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEEE
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLC 427 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~ 427 (474)
.++++|++|.| +++.+++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.......|+.+||+
T Consensus 4 ~i~~~~l~~~~-~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v 82 (303)
T TIGR01288 4 AIDLVGVSKSY-GDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVV 82 (303)
T ss_pred EEEEEeEEEEe-CCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEE
Confidence 58999999999 45789999999999999999999999999999999999999999999999998865445567789999
Q ss_pred cCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhH
Q psy7411 428 PQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSY 467 (474)
Q Consensus 428 ~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~ 467 (474)
||++.+++.+|++||+.++...++.+.++..+++++++..
T Consensus 83 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~ 122 (303)
T TIGR01288 83 PQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEF 122 (303)
T ss_pred eccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 9999999999999999987776676655555555555543
No 23
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.86 E-value=2.8e-21 Score=185.15 Aligned_cols=118 Identities=34% Similarity=0.528 Sum_probs=102.3
Q ss_pred EEEEeeEEEEcCCc----eeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcce
Q psy7411 349 IQLRGLTKIYKTGK----KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESL 424 (474)
Q Consensus 349 I~i~~Lsk~y~~~~----~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~I 424 (474)
++++|+++.|+ ++ ++++++||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|+++.....+.++.+
T Consensus 2 l~~~~v~~~~~-~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFR-DVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRL 80 (218)
T ss_pred eEEEEEEEecC-CCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhE
Confidence 67899999995 34 79999999999999999999999999999999999999999999999999865445567789
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhH
Q psy7411 425 GLCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSY 467 (474)
Q Consensus 425 G~~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~ 467 (474)
||++|++.+++.+|++||+.+....++.+.++..+++.+++..
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~ 123 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADR 123 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999987776676666666666666654
No 24
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=2.4e-21 Score=200.09 Aligned_cols=120 Identities=24% Similarity=0.381 Sum_probs=106.4
Q ss_pred ccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEE
Q psy7411 347 SGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGL 426 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~ 426 (474)
..++++|++|.| +++.+++++||++.+||+++|+||||||||||+++|+|+.+|++|+|.++|+++.... ..++++||
T Consensus 5 ~~l~~~~l~~~~-~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~-~~~r~ig~ 82 (351)
T PRK11432 5 NFVVLKNITKRF-GSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRS-IQQRDICM 82 (351)
T ss_pred cEEEEEeEEEEE-CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCC-HHHCCEEE
Confidence 358999999999 5678999999999999999999999999999999999999999999999999986432 33577999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhHh
Q psy7411 427 CPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSYV 468 (474)
Q Consensus 427 ~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~~ 468 (474)
|+|++.+|+++||+||+.+..+.++.++++..+++++++..+
T Consensus 83 vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~ 124 (351)
T PRK11432 83 VFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELV 124 (351)
T ss_pred EeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHc
Confidence 999999999999999999988877888887777777776653
No 25
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.86 E-value=2.9e-21 Score=199.88 Aligned_cols=119 Identities=22% Similarity=0.349 Sum_probs=104.2
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEEE
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLC 427 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~ 427 (474)
.++++|++|.|++++.+++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.... ..++.+||+
T Consensus 3 ~l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~-~~~r~ig~v 81 (356)
T PRK11650 3 GLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELE-PADRDIAMV 81 (356)
T ss_pred EEEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCC-HHHCCEEEE
Confidence 4789999999943468999999999999999999999999999999999999999999999999986422 235679999
Q ss_pred cCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhH
Q psy7411 428 PQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSY 467 (474)
Q Consensus 428 ~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~ 467 (474)
||++.+|+++||+||+.+..+.++.++++..+++++++..
T Consensus 82 ~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~ 121 (356)
T PRK11650 82 FQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARI 121 (356)
T ss_pred eCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHH
Confidence 9999999999999999998877777777777777777654
No 26
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.86 E-value=4.9e-21 Score=197.28 Aligned_cols=120 Identities=28% Similarity=0.354 Sum_probs=105.1
Q ss_pred EEEEeeEEEEcC---CceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcc----hHHhh
Q psy7411 349 IQLRGLTKIYKT---GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYE----MGKVR 421 (474)
Q Consensus 349 I~i~~Lsk~y~~---~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~----~~~ir 421 (474)
++++|++|.|++ .+.+++++||++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++... ....|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 789999999952 24799999999999999999999999999999999999999999999999998642 23457
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhHh
Q psy7411 422 ESLGLCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSYV 468 (474)
Q Consensus 422 ~~IG~~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~~ 468 (474)
+++||+||+..+++.+||+||+.+.....+.++++..+++.+++..+
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~v 128 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALV 128 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 78999999999999999999999987777777777777777777654
No 27
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.86 E-value=5.5e-21 Score=183.35 Aligned_cols=119 Identities=51% Similarity=0.839 Sum_probs=100.3
Q ss_pred EEEEeeEEEEcCC-ceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEEE
Q psy7411 349 IQLRGLTKIYKTG-KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLC 427 (474)
Q Consensus 349 I~i~~Lsk~y~~~-~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~ 427 (474)
++++|+++.|++. +++++++||++++||+++|+||||||||||+++|+|+.+|++|++.++|+++.....+.++.+||+
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v 80 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYC 80 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEe
Confidence 4689999999432 679999999999999999999999999999999999999999999999998865445567789999
Q ss_pred cCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhH
Q psy7411 428 PQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSY 467 (474)
Q Consensus 428 ~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~ 467 (474)
+|++.+++.+|++||+.+....++.+..+..+++.+++..
T Consensus 81 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 120 (220)
T cd03263 81 PQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRV 120 (220)
T ss_pred cCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 9999999999999999988776666555544455555543
No 28
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.85 E-value=6.5e-21 Score=182.55 Aligned_cols=119 Identities=26% Similarity=0.412 Sum_probs=99.1
Q ss_pred EEEEeeEEEEcCC-ceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcc----hHHhhcc
Q psy7411 349 IQLRGLTKIYKTG-KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYE----MGKVRES 423 (474)
Q Consensus 349 I~i~~Lsk~y~~~-~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~----~~~ir~~ 423 (474)
++++|+++.|++. +.+++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++... ....|+.
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRH 81 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHh
Confidence 6899999999533 4699999999999999999999999999999999999999999999999987531 2235678
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhH
Q psy7411 424 LGLCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSY 467 (474)
Q Consensus 424 IG~~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~ 467 (474)
++|++|++.+++.+|+.||+.+....++...++..+++.+.+..
T Consensus 82 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~ 125 (216)
T TIGR00960 82 IGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEK 125 (216)
T ss_pred ceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999987666665555445555555543
No 29
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.85 E-value=2.6e-21 Score=186.85 Aligned_cols=102 Identities=31% Similarity=0.501 Sum_probs=93.2
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc--chHHhhcceE
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY--EMGKVRESLG 425 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~--~~~~ir~~IG 425 (474)
.++++||+..| +..++|+++||++++||+++++|+||||||||+++|+|+.+|.+|+|.++|+|+.. ..+.+|..++
T Consensus 3 mL~v~~l~~~Y-G~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~ 81 (237)
T COG0410 3 MLEVENLSAGY-GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIA 81 (237)
T ss_pred ceeEEeEeecc-cceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeE
Confidence 57899999999 56899999999999999999999999999999999999999999999999999985 3445677899
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHhcC
Q psy7411 426 LCPQYDLLFEELTVEDHLQFFAKGK 450 (474)
Q Consensus 426 ~~~Q~~~L~~~LTV~E~L~~~~~lk 450 (474)
||||...+|+.|||+|||...+...
T Consensus 82 ~VPegR~iF~~LTVeENL~~g~~~~ 106 (237)
T COG0410 82 YVPEGRRIFPRLTVEENLLLGAYAR 106 (237)
T ss_pred eCcccccchhhCcHHHHHhhhhhcc
Confidence 9999999999999999999865443
No 30
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=8.1e-21 Score=184.34 Aligned_cols=118 Identities=31% Similarity=0.535 Sum_probs=99.2
Q ss_pred EEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcc----hHHhhcce
Q psy7411 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYE----MGKVRESL 424 (474)
Q Consensus 349 I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~----~~~ir~~I 424 (474)
++++|+++.| +++++++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++... ....|+.+
T Consensus 1 l~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i 79 (235)
T cd03261 1 IELRGLTKSF-GGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRM 79 (235)
T ss_pred CeEEEEEEEE-CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcce
Confidence 4689999999 457899999999999999999999999999999999999999999999999987532 23567789
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHhcC-CCCHHHHHHHHHHHHhH
Q psy7411 425 GLCPQYDLLFEELTVEDHLQFFAKGK-EFNGITYGRALLLMMSY 467 (474)
Q Consensus 425 G~~~Q~~~L~~~LTV~E~L~~~~~lk-g~~~~~~~~~l~~~~~~ 467 (474)
||+||++.+++.+|++||+.+..... +.+.++..+++.+++..
T Consensus 80 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 123 (235)
T cd03261 80 GMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEA 123 (235)
T ss_pred EEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHH
Confidence 99999999999999999998865433 44555555666666554
No 31
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.85 E-value=1e-20 Score=180.56 Aligned_cols=119 Identities=24% Similarity=0.365 Sum_probs=100.7
Q ss_pred EEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcc----hHHhhcce
Q psy7411 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYE----MGKVRESL 424 (474)
Q Consensus 349 I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~----~~~ir~~I 424 (474)
++++|+++.|++.+++++++||++++||+++|+||||||||||+++|+|+.+|++|++.++|+++... ....++.+
T Consensus 1 l~~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i 80 (214)
T cd03292 1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKI 80 (214)
T ss_pred CEEEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHhe
Confidence 36899999995346799999999999999999999999999999999999999999999999988532 23456789
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhH
Q psy7411 425 GLCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSY 467 (474)
Q Consensus 425 G~~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~ 467 (474)
+|++|++.+++.+|++||+.+....++.+.++..+++++++.+
T Consensus 81 ~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 123 (214)
T cd03292 81 GVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALEL 123 (214)
T ss_pred EEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999987666665555556666666655
No 32
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.85 E-value=9.3e-21 Score=197.36 Aligned_cols=119 Identities=25% Similarity=0.416 Sum_probs=104.6
Q ss_pred ccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEE
Q psy7411 347 SGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGL 426 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~ 426 (474)
+.++++|++|.| +++.+++++||++.+||+++|+||||||||||+++|+|+.+|++|+|.++|+++.... ..++.+||
T Consensus 13 ~~L~l~~l~~~~-~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~-~~~r~ig~ 90 (375)
T PRK09452 13 PLVELRGISKSF-DGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVP-AENRHVNT 90 (375)
T ss_pred ceEEEEEEEEEE-CCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCC-HHHCCEEE
Confidence 458999999999 5678999999999999999999999999999999999999999999999999986422 23567999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhH
Q psy7411 427 CPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSY 467 (474)
Q Consensus 427 ~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~ 467 (474)
++|++.+|+++||.||+.+..+.++.+.++..+++++++..
T Consensus 91 vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~ 131 (375)
T PRK09452 91 VFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRM 131 (375)
T ss_pred EecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHH
Confidence 99999999999999999998777777777777777777654
No 33
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.85 E-value=9.6e-21 Score=196.43 Aligned_cols=119 Identities=24% Similarity=0.403 Sum_probs=105.2
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCe--eEEEECCeecCcchHHhhcceE
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTS--GTAYIDGHDIWYEMGKVRESLG 425 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~Pts--G~i~i~G~dI~~~~~~ir~~IG 425 (474)
.++++|++|.| +++.+++++||++.+||+++|+||||||||||+++|+|+.+|++ |+|.++|+++... ...++.+|
T Consensus 5 ~l~~~~l~~~~-~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~-~~~~r~ig 82 (362)
T TIGR03258 5 GIRIDHLRVAY-GANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHA-PPHKRGLA 82 (362)
T ss_pred EEEEEEEEEEE-CCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCC-CHHHCCEE
Confidence 47899999999 45789999999999999999999999999999999999999999 9999999998532 22356799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhHh
Q psy7411 426 LCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSYV 468 (474)
Q Consensus 426 ~~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~~ 468 (474)
|++|+..+|+++||+||+.+..+.++.++++..+++++++..+
T Consensus 83 ~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~ 125 (362)
T TIGR03258 83 LLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLV 125 (362)
T ss_pred EEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999988777778777777777777653
No 34
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.85 E-value=1.1e-20 Score=197.10 Aligned_cols=120 Identities=32% Similarity=0.500 Sum_probs=105.8
Q ss_pred ccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEE
Q psy7411 347 SGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGL 426 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~ 426 (474)
..++++|++|.| +++.+++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++... ...++.+||
T Consensus 18 ~~l~l~~v~~~~-~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~-~~~~r~ig~ 95 (377)
T PRK11607 18 PLLEIRNLTKSF-DGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHV-PPYQRPINM 95 (377)
T ss_pred ceEEEEeEEEEE-CCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCC-CHHHCCEEE
Confidence 358999999999 457899999999999999999999999999999999999999999999999998542 234678999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhHh
Q psy7411 427 CPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSYV 468 (474)
Q Consensus 427 ~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~~ 468 (474)
++|++.+|+++||.||+.+..+.++.++++..++++++++.+
T Consensus 96 vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l 137 (377)
T PRK11607 96 MFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLV 137 (377)
T ss_pred EeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 999999999999999999987777777777777777776643
No 35
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.85 E-value=7.1e-21 Score=192.29 Aligned_cols=112 Identities=36% Similarity=0.505 Sum_probs=97.9
Q ss_pred EEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEEEcCCCCCCC
Q psy7411 356 KIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFE 435 (474)
Q Consensus 356 k~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~~Q~~~L~~ 435 (474)
|.| +++.+++++||++++||++||+||||||||||+++|+|+++|++|+|.++|+++.....+.|+.+||+||++.+++
T Consensus 1 k~y-~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~ 79 (302)
T TIGR01188 1 KVY-GDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDE 79 (302)
T ss_pred Cee-CCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCC
Confidence 467 4578999999999999999999999999999999999999999999999999986554566778999999999999
Q ss_pred CCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhHh
Q psy7411 436 ELTVEDHLQFFAKGKEFNGITYGRALLLMMSYV 468 (474)
Q Consensus 436 ~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~~ 468 (474)
.+|++||+.+.+..+|.+.++..+++++++..+
T Consensus 80 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~ 112 (302)
T TIGR01188 80 DLTGRENLEMMGRLYGLPKDEAEERAEELLELF 112 (302)
T ss_pred CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 999999999988888877666666666666553
No 36
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.85 E-value=7.3e-21 Score=184.17 Aligned_cols=101 Identities=32% Similarity=0.510 Sum_probs=94.0
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc----chHHhhcc
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY----EMGKVRES 423 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~----~~~~ir~~ 423 (474)
.++++||+|+|++++++|+++||++++||+++++|++|||||||+|+|.|+.+|++|++.++|.++.. ..++.|++
T Consensus 3 ~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~ 82 (258)
T COG3638 3 MIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRD 82 (258)
T ss_pred eEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHh
Confidence 58999999999878899999999999999999999999999999999999999999999999998863 46778899
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHHHh
Q psy7411 424 LGLCPQYDLLFEELTVEDHLQFFAK 448 (474)
Q Consensus 424 IG~~~Q~~~L~~~LTV~E~L~~~~~ 448 (474)
+||++|+++|-+.++|.+|+.....
T Consensus 83 iGmIfQ~~nLv~r~sv~~NVl~grl 107 (258)
T COG3638 83 IGMIFQQFNLVPRLSVLENVLLGRL 107 (258)
T ss_pred ceeEeccCCcccccHHHHHHHhhhc
Confidence 9999999999999999999987543
No 37
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.85 E-value=1.2e-20 Score=180.73 Aligned_cols=119 Identities=26% Similarity=0.362 Sum_probs=98.1
Q ss_pred EEEEeeEEEEcCC---ceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcch----HH-h
Q psy7411 349 IQLRGLTKIYKTG---KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEM----GK-V 420 (474)
Q Consensus 349 I~i~~Lsk~y~~~---~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~----~~-i 420 (474)
++++|+++.|++. +++++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.... .. .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 4689999999532 67999999999999999999999999999999999999999999999999875321 12 3
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhH
Q psy7411 421 RESLGLCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSY 467 (474)
Q Consensus 421 r~~IG~~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~ 467 (474)
++.++|++|++.+++.+|++||+.+....++....+..+++.+++..
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~ 127 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLER 127 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHH
Confidence 46799999999999999999999987666665544444555555544
No 38
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.85 E-value=1.4e-20 Score=179.55 Aligned_cols=115 Identities=29% Similarity=0.484 Sum_probs=97.8
Q ss_pred EEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEEEc
Q psy7411 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCP 428 (474)
Q Consensus 349 I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~~ 428 (474)
++++|+++.| +++.+++++||++.+||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ..++.++|++
T Consensus 1 l~~~~l~~~~-~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~---~~~~~i~~~~ 76 (210)
T cd03269 1 LEVENVTKRF-GRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI---AARNRIGYLP 76 (210)
T ss_pred CEEEEEEEEE-CCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH---HHHccEEEec
Confidence 4689999999 45789999999999999999999999999999999999999999999999988743 4567799999
Q ss_pred CCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhH
Q psy7411 429 QYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSY 467 (474)
Q Consensus 429 Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~ 467 (474)
|++.+++.+|++||+.+....++.+.++..+++.+.++.
T Consensus 77 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~ 115 (210)
T cd03269 77 EERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLER 115 (210)
T ss_pred cCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 999999999999999987766666555555555554443
No 39
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.84 E-value=2.3e-21 Score=193.62 Aligned_cols=117 Identities=26% Similarity=0.433 Sum_probs=99.7
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCe---ecCcchHHhhcce
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGH---DIWYEMGKVRESL 424 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~---dI~~~~~~ir~~I 424 (474)
.+++++++|.| +...+++|++++|+.||.++|+||||||||||+|+|+||+.|++|+|.++|+ |... .....++|
T Consensus 2 ~i~i~~~~~~~-~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~-~~~~~R~V 79 (345)
T COG1118 2 SIRINNVKKRF-GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSN-LAVRDRKV 79 (345)
T ss_pred ceeehhhhhhc-ccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhc-cchhhcce
Confidence 46889999999 6789999999999999999999999999999999999999999999999999 5543 22334669
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHhcCC--CCHHHHHHHHHHHHh
Q psy7411 425 GLCPQYDLLFEELTVEDHLQFFAKGKE--FNGITYGRALLLMMS 466 (474)
Q Consensus 425 G~~~Q~~~L~~~LTV~E~L~~~~~lkg--~~~~~~~~~l~~~~~ 466 (474)
|+++|+..||++|||.|||+|..+.+. .++.+++.++++.+.
T Consensus 80 GfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~ 123 (345)
T COG1118 80 GFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLR 123 (345)
T ss_pred eEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHH
Confidence 999999999999999999999987663 345566666665544
No 40
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.84 E-value=1.6e-20 Score=179.38 Aligned_cols=119 Identities=23% Similarity=0.350 Sum_probs=99.4
Q ss_pred EEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcc----hHHhhcce
Q psy7411 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYE----MGKVRESL 424 (474)
Q Consensus 349 I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~----~~~ir~~I 424 (474)
++++|+++.|++++.+++++||++++||+++|+||||||||||+++|+|+.+|++|++.++|+++... ....++.+
T Consensus 2 l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 81 (214)
T TIGR02673 2 IEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRI 81 (214)
T ss_pred EEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhhe
Confidence 68999999994346899999999999999999999999999999999999999999999999988532 22456789
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhH
Q psy7411 425 GLCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSY 467 (474)
Q Consensus 425 G~~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~ 467 (474)
+|++|++.+++.+|+.||+.+....++...++..++++++++.
T Consensus 82 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 124 (214)
T TIGR02673 82 GVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQ 124 (214)
T ss_pred EEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999987666665555445555555543
No 41
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.84 E-value=5.2e-21 Score=200.66 Aligned_cols=120 Identities=29% Similarity=0.443 Sum_probs=106.3
Q ss_pred ccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecC--cchHHhhcce
Q psy7411 347 SGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIW--YEMGKVRESL 424 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~--~~~~~ir~~I 424 (474)
..+++++++|+|+ +..|.+++||++++|||.+|+|.|||||||||++|.|+++|++|+|.++|+.+. ...+.+|..|
T Consensus 3 ~~l~~~~itK~f~-~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GI 81 (501)
T COG3845 3 PALEMRGITKRFP-GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGI 81 (501)
T ss_pred ceEEEeccEEEcC-CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCC
Confidence 3588999999994 789999999999999999999999999999999999999999999999999986 3445567789
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHhc---CCCCHHHHHHHHHHHHhH
Q psy7411 425 GLCPQYDLLFEELTVEDHLQFFAKG---KEFNGITYGRALLLMMSY 467 (474)
Q Consensus 425 G~~~Q~~~L~~~LTV~E~L~~~~~l---kg~~~~~~~~~l~~~~~~ 467 (474)
|||.||+.|.+.+||.||+.+...- ...+.+++.+++++++.+
T Consensus 82 GMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~ 127 (501)
T COG3845 82 GMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSER 127 (501)
T ss_pred cEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHH
Confidence 9999999999999999999998643 245778888888887754
No 42
>PRK10908 cell division protein FtsE; Provisional
Probab=99.84 E-value=2.1e-20 Score=179.89 Aligned_cols=119 Identities=27% Similarity=0.418 Sum_probs=100.2
Q ss_pred EEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcc----hHHhhcce
Q psy7411 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYE----MGKVRESL 424 (474)
Q Consensus 349 I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~----~~~ir~~I 424 (474)
++++|+++.|++++.+++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++... ....|+.+
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i 81 (222)
T PRK10908 2 IRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQI 81 (222)
T ss_pred EEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhhe
Confidence 67899999994346799999999999999999999999999999999999999999999999988531 22356789
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhH
Q psy7411 425 GLCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSY 467 (474)
Q Consensus 425 G~~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~ 467 (474)
+|++|++.+++.+|++||+.+....++.+.++..+++++++++
T Consensus 82 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 124 (222)
T PRK10908 82 GMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDK 124 (222)
T ss_pred EEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHH
Confidence 9999999888889999999987666666665555556666554
No 43
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=2e-20 Score=192.65 Aligned_cols=120 Identities=26% Similarity=0.345 Sum_probs=103.5
Q ss_pred EEEEeeEEEEc--C-CceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcc----hHHhh
Q psy7411 349 IQLRGLTKIYK--T-GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYE----MGKVR 421 (474)
Q Consensus 349 I~i~~Lsk~y~--~-~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~----~~~ir 421 (474)
++++|+++.|+ + .+++++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++... ....|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 68999999995 1 36799999999999999999999999999999999999999999999999998631 22356
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhHh
Q psy7411 422 ESLGLCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSYV 468 (474)
Q Consensus 422 ~~IG~~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~~ 468 (474)
+++||+||++.+++.+|+.||+.+.....+.+.++..+++++++..+
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~ 128 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELV 128 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 78999999999999999999999987777777666666777776654
No 44
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=2e-20 Score=182.48 Aligned_cols=119 Identities=35% Similarity=0.532 Sum_probs=100.4
Q ss_pred EEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chHHhhcceEEE
Q psy7411 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMGKVRESLGLC 427 (474)
Q Consensus 349 I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~~ir~~IG~~ 427 (474)
++++++++.|++.+.+++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ...+.++.++|+
T Consensus 1 l~~~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (242)
T cd03295 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYV 80 (242)
T ss_pred CEEEEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEE
Confidence 3689999999432679999999999999999999999999999999999999999999999998753 334556789999
Q ss_pred cCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhH
Q psy7411 428 PQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSY 467 (474)
Q Consensus 428 ~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~ 467 (474)
||++.+++.+|++||+.+.....+.+.++..++++++++.
T Consensus 81 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~ 120 (242)
T cd03295 81 IQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLAL 120 (242)
T ss_pred ccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 9999999999999999987666665555555566666654
No 45
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=1.6e-20 Score=179.54 Aligned_cols=117 Identities=30% Similarity=0.471 Sum_probs=97.2
Q ss_pred EEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEEEc
Q psy7411 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCP 428 (474)
Q Consensus 349 I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~~ 428 (474)
++++|+++.| +++++++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++... ...++.++|+|
T Consensus 1 l~~~~l~~~~-~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~-~~~~~~i~~v~ 78 (213)
T cd03259 1 LELKGLSKTY-GSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGV-PPERRNIGMVF 78 (213)
T ss_pred CeeeeeEEEe-CCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcC-chhhccEEEEc
Confidence 3689999999 457899999999999999999999999999999999999999999999999988532 23456799999
Q ss_pred CCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhH
Q psy7411 429 QYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSY 467 (474)
Q Consensus 429 Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~ 467 (474)
|++.+++.+|++||+.+.....+...++..+++++.+..
T Consensus 79 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 117 (213)
T cd03259 79 QDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLEL 117 (213)
T ss_pred CchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHH
Confidence 999999999999999886655555544444455555443
No 46
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.84 E-value=1.9e-20 Score=178.78 Aligned_cols=117 Identities=30% Similarity=0.437 Sum_probs=99.4
Q ss_pred EEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEEEc
Q psy7411 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCP 428 (474)
Q Consensus 349 I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~~ 428 (474)
++++|+++.| +++++++++||++++||+++|+||||||||||+++|+|+.+|++|++.++|+++... ...++.++|++
T Consensus 1 i~~~~l~~~~-~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~-~~~~~~i~~~~ 78 (213)
T cd03301 1 VELENVTKRF-GNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDL-PPKDRDIAMVF 78 (213)
T ss_pred CEEEeeEEEE-CCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcC-CcccceEEEEe
Confidence 4689999999 457899999999999999999999999999999999999999999999999988532 12245799999
Q ss_pred CCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhH
Q psy7411 429 QYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSY 467 (474)
Q Consensus 429 Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~ 467 (474)
|++.+++.+|++||+.+....++...++..++++++++.
T Consensus 79 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 117 (213)
T cd03301 79 QNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAEL 117 (213)
T ss_pred cChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 999999999999999987666666666666666666654
No 47
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.84 E-value=2.1e-20 Score=194.36 Aligned_cols=119 Identities=24% Similarity=0.335 Sum_probs=103.4
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEEE
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLC 427 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~ 427 (474)
.++++|++|.| +++.+++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... ..++.+||+
T Consensus 3 ~l~i~~l~~~~-~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~-~~~~~i~~v 80 (369)
T PRK11000 3 SVTLRNVTKAY-GDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVP-PAERGVGMV 80 (369)
T ss_pred EEEEEEEEEEe-CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCC-HhHCCEEEE
Confidence 47899999999 4578999999999999999999999999999999999999999999999999985322 235679999
Q ss_pred cCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhHh
Q psy7411 428 PQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSYV 468 (474)
Q Consensus 428 ~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~~ 468 (474)
+|+..+++++||+||+.+..+.++.+.++..+++++++..+
T Consensus 81 ~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~l 121 (369)
T PRK11000 81 FQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVL 121 (369)
T ss_pred eCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHc
Confidence 99999999999999999987777777666667777776654
No 48
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.84 E-value=2e-20 Score=178.12 Aligned_cols=110 Identities=28% Similarity=0.438 Sum_probs=94.2
Q ss_pred EEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEEEc
Q psy7411 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCP 428 (474)
Q Consensus 349 I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~~ 428 (474)
++++|+++.| +++++++++||++++||+++|+||||||||||+++|+|+.+|++|++.++|+++... .+.++.++|+|
T Consensus 1 l~~~~l~~~~-~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~i~~~~ 78 (208)
T cd03268 1 LKTNDLTKTY-GKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN-IEALRRIGALI 78 (208)
T ss_pred CEEEEEEEEE-CCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch-HHHHhhEEEec
Confidence 4689999999 457899999999999999999999999999999999999999999999999987543 45567899999
Q ss_pred CCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHH
Q psy7411 429 QYDLLFEELTVEDHLQFFAKGKEFNGITYGRA 460 (474)
Q Consensus 429 Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~ 460 (474)
|++.+++.+|++||+.+.....+...+++.+.
T Consensus 79 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~ 110 (208)
T cd03268 79 EAPGFYPNLTARENLRLLARLLGIRKKRIDEV 110 (208)
T ss_pred CCCccCccCcHHHHHHHHHHhcCCcHHHHHHH
Confidence 99999999999999998766555443334433
No 49
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.84 E-value=2.2e-20 Score=180.58 Aligned_cols=118 Identities=34% Similarity=0.504 Sum_probs=98.0
Q ss_pred EEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcc-hHH-hhcceEE
Q psy7411 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYE-MGK-VRESLGL 426 (474)
Q Consensus 349 I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~-~~~-ir~~IG~ 426 (474)
++++|+++.| +++.+++++||++++||+++|+||||||||||+++|+|+.+|++|++.++|+++... ..+ .++.++|
T Consensus 1 l~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (232)
T cd03218 1 LRAENLSKRY-GKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGY 79 (232)
T ss_pred CeEEEEEEEe-CCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEE
Confidence 4689999999 457899999999999999999999999999999999999999999999999987532 222 3457999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhH
Q psy7411 427 CPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSY 467 (474)
Q Consensus 427 ~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~ 467 (474)
++|++.+++.+|++||+.+....++....+..+++++++..
T Consensus 80 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 120 (232)
T cd03218 80 LPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEE 120 (232)
T ss_pred ecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 99999999999999999987655555555555555555543
No 50
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.84 E-value=2.2e-20 Score=193.10 Aligned_cols=119 Identities=24% Similarity=0.382 Sum_probs=102.2
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEEE
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLC 427 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~ 427 (474)
.++++|++|.| +++.+++++||++.+||+++|+||||||||||+++|+|+.+|++|+|.++|+++... ...++.+|||
T Consensus 2 ~L~i~~l~~~~-~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~-~~~~r~i~~v 79 (353)
T PRK10851 2 SIEIANIKKSF-GRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRL-HARDRKVGFV 79 (353)
T ss_pred EEEEEEEEEEe-CCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-CHHHCCEEEE
Confidence 37899999999 457899999999999999999999999999999999999999999999999998642 2345679999
Q ss_pred cCCCCCCCCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHhHh
Q psy7411 428 PQYDLLFEELTVEDHLQFFAKG----KEFNGITYGRALLLMMSYV 468 (474)
Q Consensus 428 ~Q~~~L~~~LTV~E~L~~~~~l----kg~~~~~~~~~l~~~~~~~ 468 (474)
+|++.+++.+||+||+.+..+. ++.+.++..+++++++..+
T Consensus 80 ~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 124 (353)
T PRK10851 80 FQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMV 124 (353)
T ss_pred ecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHc
Confidence 9999999999999999987654 2445666677777777654
No 51
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=2.3e-20 Score=178.12 Aligned_cols=117 Identities=34% Similarity=0.475 Sum_probs=98.7
Q ss_pred EEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEEEc
Q psy7411 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCP 428 (474)
Q Consensus 349 I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~~ 428 (474)
++++|+++.| +++++++++||++++| +++|+||||||||||+++|+|+++|++|++.++|+++.....+.++.++|++
T Consensus 1 i~~~~~~~~~-~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 78 (211)
T cd03264 1 LQLENLTKRY-GKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLP 78 (211)
T ss_pred CEEEEEEEEE-CCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEec
Confidence 4689999999 4568999999999999 9999999999999999999999999999999999987543345677899999
Q ss_pred CCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhH
Q psy7411 429 QYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSY 467 (474)
Q Consensus 429 Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~ 467 (474)
|++.+++.+|+.||+.+....++.+.++..+++++++..
T Consensus 79 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 117 (211)
T cd03264 79 QEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLEL 117 (211)
T ss_pred CCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 999999999999999987666665555555555555543
No 52
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=2.9e-20 Score=178.74 Aligned_cols=115 Identities=25% Similarity=0.374 Sum_probs=97.2
Q ss_pred EEEEeeEEEEcCC---ceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceE
Q psy7411 349 IQLRGLTKIYKTG---KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLG 425 (474)
Q Consensus 349 I~i~~Lsk~y~~~---~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG 425 (474)
++++|+++.|++. +++++++||++++||+++|+||||||||||+++|+|+.+|++|++.++|+++.. .++.++
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~----~~~~i~ 76 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG----PGPDRG 76 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc----ccCcEE
Confidence 4689999999431 679999999999999999999999999999999999999999999999998752 356799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhH
Q psy7411 426 LCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSY 467 (474)
Q Consensus 426 ~~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~ 467 (474)
|++|++.+++.+|++||+.+....++.+.++..+++++++..
T Consensus 77 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~ 118 (220)
T cd03293 77 YVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLEL 118 (220)
T ss_pred EEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 999999999989999999987666666555555555555544
No 53
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=2.8e-20 Score=180.13 Aligned_cols=118 Identities=25% Similarity=0.404 Sum_probs=98.3
Q ss_pred EEEEeeEEEEcCCc----eeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcc----hHHh
Q psy7411 349 IQLRGLTKIYKTGK----KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYE----MGKV 420 (474)
Q Consensus 349 I~i~~Lsk~y~~~~----~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~----~~~i 420 (474)
++++|+++.|+ ++ ++++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++... ..+.
T Consensus 2 i~~~~l~~~~~-~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (233)
T cd03258 2 IELKNVSKVFG-DTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKA 80 (233)
T ss_pred eEEecceEEcc-CCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHH
Confidence 68899999995 34 799999999999999999999999999999999999999999999999988532 1234
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhH
Q psy7411 421 RESLGLCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSY 467 (474)
Q Consensus 421 r~~IG~~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~ 467 (474)
++.++|+||++.+++.+|++||+.+....++....+..+++.+++.+
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~ 127 (233)
T cd03258 81 RRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLEL 127 (233)
T ss_pred HhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 67799999999999999999999886655555544444555555544
No 54
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.84 E-value=4.2e-20 Score=179.61 Aligned_cols=117 Identities=26% Similarity=0.435 Sum_probs=98.2
Q ss_pred EEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEEEc
Q psy7411 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCP 428 (474)
Q Consensus 349 I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~~ 428 (474)
++++|+++.| +++.+++++||++.+||+++|+||||||||||+++|+|+.+|++|+|.++|.++.......++.++|++
T Consensus 2 l~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~ 80 (236)
T TIGR03864 2 LEVAGLSFAY-GARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVF 80 (236)
T ss_pred EEEEeeEEEE-CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeC
Confidence 6789999999 457899999999999999999999999999999999999999999999999988643333445799999
Q ss_pred CCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q psy7411 429 QYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMS 466 (474)
Q Consensus 429 Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~ 466 (474)
|++.+++.+|++||+.+....++.+.++..+++.+++.
T Consensus 81 q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 118 (236)
T TIGR03864 81 QQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLA 118 (236)
T ss_pred CCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 99988889999999998776666555544444555444
No 55
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.84 E-value=4.9e-20 Score=178.80 Aligned_cols=122 Identities=24% Similarity=0.376 Sum_probs=99.8
Q ss_pred ccEEEEeeEEEEcCC---ceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcc-h---HH
Q psy7411 347 SGIQLRGLTKIYKTG---KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYE-M---GK 419 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~~---~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~-~---~~ 419 (474)
+.++++|+++.|+++ +++++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++... . .+
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~ 83 (233)
T PRK11629 4 ILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83 (233)
T ss_pred ceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHH
Confidence 358999999999532 4799999999999999999999999999999999999999999999999998632 1 12
Q ss_pred hh-cceEEEcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhHh
Q psy7411 420 VR-ESLGLCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSYV 468 (474)
Q Consensus 420 ir-~~IG~~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~~ 468 (474)
.+ +.+||++|+..+++.+|++||+.+.....+...++..+++.+++..+
T Consensus 84 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~ 133 (233)
T PRK11629 84 LRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAV 133 (233)
T ss_pred HHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc
Confidence 33 57999999999999999999999865555555555555666665543
No 56
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.84 E-value=1.1e-20 Score=186.74 Aligned_cols=99 Identities=32% Similarity=0.451 Sum_probs=91.7
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chHHhhcceEE
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMGKVRESLGL 426 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~~ir~~IG~ 426 (474)
.++++||+..| +++.+++++||++++||+++|+||||||||||+|+|+|+++|.+|+|.++|+++.+ ...++.+.+||
T Consensus 2 ~L~~~~ls~~y-~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~ 80 (258)
T COG1120 2 MLEVENLSFGY-GGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAY 80 (258)
T ss_pred eeEEEEEEEEE-CCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEE
Confidence 47899999999 57899999999999999999999999999999999999999999999999999975 45667788999
Q ss_pred EcCCCCCCCCCCHHHHHHHHH
Q psy7411 427 CPQYDLLFEELTVEDHLQFFA 447 (474)
Q Consensus 427 ~~Q~~~L~~~LTV~E~L~~~~ 447 (474)
+||.+...+.+||+|-+.+..
T Consensus 81 vpQ~~~~~~~~tV~d~V~~GR 101 (258)
T COG1120 81 VPQSPSAPFGLTVYELVLLGR 101 (258)
T ss_pred eccCCCCCCCcEEeehHhhcC
Confidence 999998888999999998864
No 57
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.84 E-value=8.8e-21 Score=184.42 Aligned_cols=100 Identities=34% Similarity=0.483 Sum_probs=89.6
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcch--HHhhcceE
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEM--GKVRESLG 425 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~--~~ir~~IG 425 (474)
.+++++|+|+| ++..|++|+||++++||+++|+|||||||||++|+++|+++|++|+|.++|++|.... ...|..++
T Consensus 4 lL~v~~l~k~F-GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~ 82 (250)
T COG0411 4 LLEVRGLSKRF-GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIA 82 (250)
T ss_pred eeeeccceeec-CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccce
Confidence 46799999999 6789999999999999999999999999999999999999999999999999997532 33455577
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHh
Q psy7411 426 LCPQYDLLFEELTVEDHLQFFAK 448 (474)
Q Consensus 426 ~~~Q~~~L~~~LTV~E~L~~~~~ 448 (474)
--+|...+|++|||.||+.....
T Consensus 83 RTFQ~~rlF~~lTVlENv~va~~ 105 (250)
T COG0411 83 RTFQITRLFPGLTVLENVAVGAH 105 (250)
T ss_pred eecccccccCCCcHHHHHHHHhh
Confidence 78999999999999999988644
No 58
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.83 E-value=3.9e-20 Score=176.44 Aligned_cols=118 Identities=25% Similarity=0.380 Sum_probs=98.3
Q ss_pred EEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc---chHHhhcceE
Q psy7411 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY---EMGKVRESLG 425 (474)
Q Consensus 349 I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~---~~~~ir~~IG 425 (474)
++++|+++.| +++.+++++||++.+||+++|+||||||||||+++|+|+.+|++|++.++|+++.. .....++.++
T Consensus 1 l~~~~l~~~~-~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 79 (213)
T cd03262 1 IEIKNLHKSF-GDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVG 79 (213)
T ss_pred CEEEEEEEEE-CCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcce
Confidence 3689999999 45789999999999999999999999999999999999999999999999998852 2345677899
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHh-cCCCCHHHHHHHHHHHHhH
Q psy7411 426 LCPQYDLLFEELTVEDHLQFFAK-GKEFNGITYGRALLLMMSY 467 (474)
Q Consensus 426 ~~~Q~~~L~~~LTV~E~L~~~~~-lkg~~~~~~~~~l~~~~~~ 467 (474)
|++|++.+++.+|+.||+.+... .++.+.++..+++++++..
T Consensus 80 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~ 122 (213)
T cd03262 80 MVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEK 122 (213)
T ss_pred EEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHH
Confidence 99999999999999999988643 3455555555555555554
No 59
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.83 E-value=4.3e-20 Score=175.93 Aligned_cols=102 Identities=22% Similarity=0.347 Sum_probs=92.0
Q ss_pred EEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEEEc
Q psy7411 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCP 428 (474)
Q Consensus 349 I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~~ 428 (474)
++++|+++.| +++.+++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.......++++++++
T Consensus 2 l~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~ 80 (204)
T PRK13538 2 LEARNLACER-DERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLG 80 (204)
T ss_pred eEEEEEEEEE-CCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeC
Confidence 6899999999 457899999999999999999999999999999999999999999999999988654445677899999
Q ss_pred CCCCCCCCCCHHHHHHHHHhcCC
Q psy7411 429 QYDLLFEELTVEDHLQFFAKGKE 451 (474)
Q Consensus 429 Q~~~L~~~LTV~E~L~~~~~lkg 451 (474)
|++.+++.+|+.||+.+....++
T Consensus 81 ~~~~~~~~~tv~e~l~~~~~~~~ 103 (204)
T PRK13538 81 HQPGIKTELTALENLRFYQRLHG 103 (204)
T ss_pred CccccCcCCcHHHHHHHHHHhcC
Confidence 99999999999999998766554
No 60
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.83 E-value=3.3e-20 Score=176.08 Aligned_cols=116 Identities=26% Similarity=0.317 Sum_probs=97.0
Q ss_pred EEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc--c---hHHhhcceE
Q psy7411 351 LRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY--E---MGKVRESLG 425 (474)
Q Consensus 351 i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~--~---~~~ir~~IG 425 (474)
++|+++.| +++++++++||++++||+++|+||||||||||+++|+|+.+|++|++.++|+++.. . ....++.++
T Consensus 1 i~~l~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~ 79 (206)
T TIGR03608 1 LKNISKKF-GDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLG 79 (206)
T ss_pred CcceEEEE-CCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCee
Confidence 46899999 45789999999999999999999999999999999999999999999999998642 1 123467899
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhH
Q psy7411 426 LCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSY 467 (474)
Q Consensus 426 ~~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~ 467 (474)
|++|++.+++.+|++||+.+.....+....+..+++++++..
T Consensus 80 ~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~ 121 (206)
T TIGR03608 80 YLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEK 121 (206)
T ss_pred EEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 999999999999999999987655555555555666666654
No 61
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.83 E-value=5.6e-20 Score=179.07 Aligned_cols=117 Identities=26% Similarity=0.387 Sum_probs=95.9
Q ss_pred EEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEEEc
Q psy7411 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCP 428 (474)
Q Consensus 349 I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~~ 428 (474)
++++|+++.| +++.+++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++... ...++.++|++
T Consensus 3 l~~~~l~~~~-~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~i~~v~ 80 (239)
T cd03296 3 IEVRNVSKRF-GDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDV-PVQERNVGFVF 80 (239)
T ss_pred EEEEeEEEEE-CCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcC-CccccceEEEe
Confidence 6899999999 457899999999999999999999999999999999999999999999999987532 12356799999
Q ss_pred CCCCCCCCCCHHHHHHHHHhcCCC----CHHHHHHHHHHHHhH
Q psy7411 429 QYDLLFEELTVEDHLQFFAKGKEF----NGITYGRALLLMMSY 467 (474)
Q Consensus 429 Q~~~L~~~LTV~E~L~~~~~lkg~----~~~~~~~~l~~~~~~ 467 (474)
|++.+++.+|+.||+.+....++. ..++..+++++++..
T Consensus 81 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 123 (239)
T cd03296 81 QHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKL 123 (239)
T ss_pred cCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHH
Confidence 999999999999999886544332 333344445555544
No 62
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.83 E-value=1.9e-20 Score=178.97 Aligned_cols=119 Identities=23% Similarity=0.396 Sum_probs=107.2
Q ss_pred cccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCe-----eEEEECCeecCc---ch
Q psy7411 346 ASGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTS-----GTAYIDGHDIWY---EM 417 (474)
Q Consensus 346 ~~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~Pts-----G~i~i~G~dI~~---~~ 417 (474)
...++++||++.| +.++||+++|++++++++++++||+||||||++|++..+....+ |+|.++|++|.. +.
T Consensus 5 ~~~~~~~~l~~yY-g~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~ 83 (253)
T COG1117 5 IPAIEVRDLNLYY-GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDV 83 (253)
T ss_pred cceeEecceeEEE-CchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCH
Confidence 3468899999999 67899999999999999999999999999999999999887664 999999999975 46
Q ss_pred HHhhcceEEEcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q psy7411 418 GKVRESLGLCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMS 466 (474)
Q Consensus 418 ~~ir~~IG~~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~ 466 (474)
.++|+++|+|+|.++-|| +|++||+.+..+++|...+++++.+|.-+.
T Consensus 84 ~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~~~ldeiVe~sLk 131 (253)
T COG1117 84 VELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKDKELDEIVESSLK 131 (253)
T ss_pred HHHHHHheeeccCCCCCC-chHHHHHHHhHHhhccchHHHHHHHHHHHH
Confidence 789999999999999999 899999999999999877777777776554
No 63
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.83 E-value=7.3e-20 Score=178.18 Aligned_cols=118 Identities=22% Similarity=0.342 Sum_probs=98.7
Q ss_pred EEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc---chHHhhcceE
Q psy7411 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY---EMGKVRESLG 425 (474)
Q Consensus 349 I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~---~~~~ir~~IG 425 (474)
++++|+++.| +++++++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ....+++.++
T Consensus 2 l~~~~l~~~~-~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 80 (240)
T PRK09493 2 IEFKNVSKHF-GPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAG 80 (240)
T ss_pred EEEEeEEEEE-CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceE
Confidence 6789999999 45789999999999999999999999999999999999999999999999998863 2235577899
Q ss_pred EEcCCCCCCCCCCHHHHHHHHH-hcCCCCHHHHHHHHHHHHhH
Q psy7411 426 LCPQYDLLFEELTVEDHLQFFA-KGKEFNGITYGRALLLMMSY 467 (474)
Q Consensus 426 ~~~Q~~~L~~~LTV~E~L~~~~-~lkg~~~~~~~~~l~~~~~~ 467 (474)
|++|++.+++.+|++||+.+.. ...+...++..+++.++++.
T Consensus 81 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 123 (240)
T PRK09493 81 MVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAK 123 (240)
T ss_pred EEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHH
Confidence 9999999999999999998754 23445555555556666554
No 64
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.83 E-value=6e-20 Score=173.95 Aligned_cols=102 Identities=22% Similarity=0.315 Sum_probs=90.7
Q ss_pred EEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEEEc
Q psy7411 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCP 428 (474)
Q Consensus 349 I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~~ 428 (474)
++++|+++.| +++.+++++||++++||+++|+||||||||||+++|+|+.+|++|++.++|+++.....+.++.++|++
T Consensus 1 l~~~~l~~~~-~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (198)
T TIGR01189 1 LAARNLACSR-GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLG 79 (198)
T ss_pred CEEEEEEEEE-CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEec
Confidence 4689999999 567899999999999999999999999999999999999999999999999988644345567899999
Q ss_pred CCCCCCCCCCHHHHHHHHHhcCC
Q psy7411 429 QYDLLFEELTVEDHLQFFAKGKE 451 (474)
Q Consensus 429 Q~~~L~~~LTV~E~L~~~~~lkg 451 (474)
|++.+++.+|+.||+.+.....+
T Consensus 80 q~~~~~~~~tv~~~l~~~~~~~~ 102 (198)
T TIGR01189 80 HLPGLKPELSALENLHFWAAIHG 102 (198)
T ss_pred cCcccccCCcHHHHHHHHHHHcC
Confidence 99889888999999998765554
No 65
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.83 E-value=4.7e-20 Score=177.90 Aligned_cols=117 Identities=26% Similarity=0.405 Sum_probs=96.2
Q ss_pred EEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCC-----CCCeeEEEECCeecCcc---hHHh
Q psy7411 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLI-----IPTSGTAYIDGHDIWYE---MGKV 420 (474)
Q Consensus 349 I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~-----~PtsG~i~i~G~dI~~~---~~~i 420 (474)
++++|+++.| +++++++++||++++||+++|+||||||||||+++|+|+. +|++|+|.++|+++... ....
T Consensus 1 i~~~~l~~~~-~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (227)
T cd03260 1 IELRDLNVYY-GDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLEL 79 (227)
T ss_pred CEEEEEEEEc-CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHH
Confidence 4689999999 4568999999999999999999999999999999999999 99999999999987532 3455
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHHhcCCCCH-HHHHHHHHHHHhH
Q psy7411 421 RESLGLCPQYDLLFEELTVEDHLQFFAKGKEFNG-ITYGRALLLMMSY 467 (474)
Q Consensus 421 r~~IG~~~Q~~~L~~~LTV~E~L~~~~~lkg~~~-~~~~~~l~~~~~~ 467 (474)
++.+||++|++.++ .+|++||+.+.....+... ++..+++++++..
T Consensus 80 ~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~ 126 (227)
T cd03260 80 RRRVGMVFQKPNPF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRK 126 (227)
T ss_pred HhhEEEEecCchhc-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHH
Confidence 77899999999888 7899999988765555432 2344555555543
No 66
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.83 E-value=6.9e-20 Score=175.80 Aligned_cols=102 Identities=32% Similarity=0.507 Sum_probs=89.2
Q ss_pred EEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcc-hHH-hhcceEE
Q psy7411 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYE-MGK-VRESLGL 426 (474)
Q Consensus 349 I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~-~~~-ir~~IG~ 426 (474)
++++|+++.| +++++++++||++++||+++|+||||||||||+++|+|+.+|++|++.++|+++... ..+ .++.++|
T Consensus 1 l~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (222)
T cd03224 1 LEVENLNAGY-GKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGY 79 (222)
T ss_pred CEEeeEEeec-CCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEE
Confidence 4689999999 456899999999999999999999999999999999999999999999999987532 222 3567999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHhcCC
Q psy7411 427 CPQYDLLFEELTVEDHLQFFAKGKE 451 (474)
Q Consensus 427 ~~Q~~~L~~~LTV~E~L~~~~~lkg 451 (474)
+||++.+++.+|++||+.+.....+
T Consensus 80 ~~q~~~~~~~~t~~~~l~~~~~~~~ 104 (222)
T cd03224 80 VPEGRRIFPELTVEENLLLGAYARR 104 (222)
T ss_pred eccccccCCCCcHHHHHHHHhhhcC
Confidence 9999999999999999988765443
No 67
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.82 E-value=8.3e-20 Score=176.98 Aligned_cols=101 Identities=36% Similarity=0.565 Sum_probs=88.4
Q ss_pred EEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcc-hHH-hhcceEE
Q psy7411 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYE-MGK-VRESLGL 426 (474)
Q Consensus 349 I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~-~~~-ir~~IG~ 426 (474)
++++|+++.| +++.+++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++... ..+ .++.++|
T Consensus 1 l~~~~l~~~~-~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (236)
T cd03219 1 LEVRGLTKRF-GGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGR 79 (236)
T ss_pred CeeeeeEEEE-CCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEE
Confidence 3688999999 456799999999999999999999999999999999999999999999999988642 222 3456999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHhcC
Q psy7411 427 CPQYDLLFEELTVEDHLQFFAKGK 450 (474)
Q Consensus 427 ~~Q~~~L~~~LTV~E~L~~~~~lk 450 (474)
+||++.+++.+|++||+.+.....
T Consensus 80 v~q~~~l~~~~tv~~~l~~~~~~~ 103 (236)
T cd03219 80 TFQIPRLFPELTVLENVMVAAQAR 103 (236)
T ss_pred EecccccccCCCHHHHHHHHHhhc
Confidence 999999999999999998875544
No 68
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.82 E-value=7.3e-20 Score=174.48 Aligned_cols=118 Identities=28% Similarity=0.459 Sum_probs=95.4
Q ss_pred EEEeeEEEEcCC-ceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chHHhhcceEEE
Q psy7411 350 QLRGLTKIYKTG-KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMGKVRESLGLC 427 (474)
Q Consensus 350 ~i~~Lsk~y~~~-~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~~ir~~IG~~ 427 (474)
+++|+++.|++. +.+++++||++++||+++|+||||||||||+++|+|+.+|++|++.++|+++.. .....++.++|+
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 368999999421 679999999999999999999999999999999999999999999999998853 234567789999
Q ss_pred cCCCC-CCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhH
Q psy7411 428 PQYDL-LFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSY 467 (474)
Q Consensus 428 ~Q~~~-L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~ 467 (474)
+|++. .++.+|++||+.+....++.+.++..+++++++..
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 121 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALEL 121 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 99974 35678999999886655555554444555555544
No 69
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=1.3e-19 Score=178.91 Aligned_cols=114 Identities=22% Similarity=0.323 Sum_probs=96.6
Q ss_pred EEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEEEc
Q psy7411 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCP 428 (474)
Q Consensus 349 I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~~ 428 (474)
++++|+++.| +++.+++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. .++.+||++
T Consensus 2 l~~~~l~~~~-~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~----~~~~~~~v~ 76 (255)
T PRK11248 2 LQISHLYADY-GGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEG----PGAERGVVF 76 (255)
T ss_pred EEEEEEEEEe-CCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCC----CCCcEEEEe
Confidence 6899999999 45789999999999999999999999999999999999999999999999998753 234589999
Q ss_pred CCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhH
Q psy7411 429 QYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSY 467 (474)
Q Consensus 429 Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~ 467 (474)
|++.+++.+|+.||+.+.....+.+.++..+++.+++..
T Consensus 77 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~ 115 (255)
T PRK11248 77 QNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKK 115 (255)
T ss_pred CCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHH
Confidence 999999999999999887655565555555555555544
No 70
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.82 E-value=1.5e-19 Score=176.80 Aligned_cols=116 Identities=25% Similarity=0.407 Sum_probs=96.6
Q ss_pred EEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCC-----eeEEEECCeecCc---chHHh
Q psy7411 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPT-----SGTAYIDGHDIWY---EMGKV 420 (474)
Q Consensus 349 I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~Pt-----sG~i~i~G~dI~~---~~~~i 420 (474)
++++|+++.| +++.+++++||++++||+++|+|+||||||||+++|+|+.+|+ +|+|.++|+++.. .....
T Consensus 2 l~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~ 80 (247)
T TIGR00972 2 IEIENLNLFY-GEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVEL 80 (247)
T ss_pred EEEEEEEEEE-CCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHH
Confidence 6899999999 4567999999999999999999999999999999999999998 9999999998853 23456
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHHhcCC-CCHHHHHHHHHHHHh
Q psy7411 421 RESLGLCPQYDLLFEELTVEDHLQFFAKGKE-FNGITYGRALLLMMS 466 (474)
Q Consensus 421 r~~IG~~~Q~~~L~~~LTV~E~L~~~~~lkg-~~~~~~~~~l~~~~~ 466 (474)
++.+||+||++.+++ +|+.||+.+....++ .+.++..+++++++.
T Consensus 81 ~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~ 126 (247)
T TIGR00972 81 RRRVGMVFQKPNPFP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLK 126 (247)
T ss_pred HhheEEEecCcccCC-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHH
Confidence 778999999999988 999999998665555 244444444554443
No 71
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.82 E-value=1.4e-19 Score=171.78 Aligned_cols=98 Identities=18% Similarity=0.323 Sum_probs=89.2
Q ss_pred EEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEEEc
Q psy7411 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCP 428 (474)
Q Consensus 349 I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~~ 428 (474)
++++|+++.|+ ++++++++||++++||+++|+||||||||||+++|+|+.+|++|++.++|+++.......++++||++
T Consensus 2 l~~~~l~~~~~-~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~ 80 (200)
T PRK13540 2 LDVIELDFDYH-DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVG 80 (200)
T ss_pred EEEEEEEEEeC-CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEec
Confidence 68999999994 57899999999999999999999999999999999999999999999999988654456677899999
Q ss_pred CCCCCCCCCCHHHHHHHHH
Q psy7411 429 QYDLLFEELTVEDHLQFFA 447 (474)
Q Consensus 429 Q~~~L~~~LTV~E~L~~~~ 447 (474)
|+..+++.+|++||+.+..
T Consensus 81 q~~~~~~~~tv~~~~~~~~ 99 (200)
T PRK13540 81 HRSGINPYLTLRENCLYDI 99 (200)
T ss_pred cccccCcCCCHHHHHHHHH
Confidence 9988988999999998764
No 72
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.82 E-value=1.8e-19 Score=174.04 Aligned_cols=121 Identities=19% Similarity=0.249 Sum_probs=98.5
Q ss_pred ccEEEEeeEEEEcCC---ceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcc-h---HH
Q psy7411 347 SGIQLRGLTKIYKTG---KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYE-M---GK 419 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~~---~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~-~---~~ 419 (474)
..++++|+++.|++. +.+++++||++++||+++|+||||||||||+++|+|+.+|++|++.++|+++... . .+
T Consensus 5 ~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 84 (228)
T PRK10584 5 NIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84 (228)
T ss_pred ceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHH
Confidence 358999999999532 3599999999999999999999999999999999999999999999999988532 1 12
Q ss_pred h-hcceEEEcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhH
Q psy7411 420 V-RESLGLCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSY 467 (474)
Q Consensus 420 i-r~~IG~~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~ 467 (474)
. ++.++|++|++.+++.+|+.||+.+....++.+.++..+++.++++.
T Consensus 85 ~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 133 (228)
T PRK10584 85 LRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQ 133 (228)
T ss_pred HHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 2 35799999999999999999999876555555555555556665554
No 73
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=1.3e-19 Score=180.85 Aligned_cols=120 Identities=26% Similarity=0.386 Sum_probs=101.0
Q ss_pred EEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc--chHHhhcceEE
Q psy7411 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY--EMGKVRESLGL 426 (474)
Q Consensus 349 I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~--~~~~ir~~IG~ 426 (474)
++++|+++.|++.+.+++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.. .....++.+||
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 81 (274)
T PRK13644 2 IRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGI 81 (274)
T ss_pred EEEEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEE
Confidence 6789999999544679999999999999999999999999999999999999999999999998853 23456678999
Q ss_pred EcCCCC-CCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhHh
Q psy7411 427 CPQYDL-LFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSYV 468 (474)
Q Consensus 427 ~~Q~~~-L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~~ 468 (474)
++|++. .+...|+.||+.+.....+.+.++..+++++++..+
T Consensus 82 v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~ 124 (274)
T PRK13644 82 VFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEI 124 (274)
T ss_pred EEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHC
Confidence 999975 355689999998876666677777667777766654
No 74
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=1.4e-19 Score=181.69 Aligned_cols=119 Identities=34% Similarity=0.526 Sum_probs=99.7
Q ss_pred EEEEeeEEEEcCC----ceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcc---hHHhh
Q psy7411 349 IQLRGLTKIYKTG----KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYE---MGKVR 421 (474)
Q Consensus 349 I~i~~Lsk~y~~~----~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~---~~~ir 421 (474)
++++|+++.|++. +++++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++... ..+.+
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 7899999999532 4699999999999999999999999999999999999999999999999998642 24567
Q ss_pred cceEEEcCCCC-CCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhH
Q psy7411 422 ESLGLCPQYDL-LFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSY 467 (474)
Q Consensus 422 ~~IG~~~Q~~~-L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~ 467 (474)
+.+||+||++. .+...||+||+.+.....+.+.++..+++++++..
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~ 129 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNI 129 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHH
Confidence 78999999863 22346999999987666677777776677776665
No 75
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.82 E-value=8.9e-20 Score=189.24 Aligned_cols=112 Identities=30% Similarity=0.430 Sum_probs=97.5
Q ss_pred EEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chHHh----hcceEEEcCC
Q psy7411 356 KIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMGKV----RESLGLCPQY 430 (474)
Q Consensus 356 k~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~~i----r~~IG~~~Q~ 430 (474)
|.| +.+.+++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ...+. |+.+|||+|+
T Consensus 1 ~~~-~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~ 79 (363)
T TIGR01186 1 KKT-GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQ 79 (363)
T ss_pred Ccc-CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECC
Confidence 456 56789999999999999999999999999999999999999999999999999874 23333 5689999999
Q ss_pred CCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhHh
Q psy7411 431 DLLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSYV 468 (474)
Q Consensus 431 ~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~~ 468 (474)
+.+++++||+||+.+.....|.++++..+++.+++..+
T Consensus 80 ~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~v 117 (363)
T TIGR01186 80 FALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLV 117 (363)
T ss_pred CcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 99999999999999988888887777777777776653
No 76
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.82 E-value=2.2e-19 Score=176.79 Aligned_cols=121 Identities=18% Similarity=0.272 Sum_probs=100.4
Q ss_pred ccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-----------
Q psy7411 347 SGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY----------- 415 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~----------- 415 (474)
..++++|+++.| +++.+++++||++++||+++|+|+||||||||+++|+|+.+|++|++.++|+++..
T Consensus 4 ~~l~~~~l~~~~-~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 82 (257)
T PRK10619 4 NKLNVIDLHKRY-GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVA 82 (257)
T ss_pred ccEEEeeeEEEE-CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccc
Confidence 358999999999 45789999999999999999999999999999999999999999999999998742
Q ss_pred ---chHHhhcceEEEcCCCCCCCCCCHHHHHHHHH-hcCCCCHHHHHHHHHHHHhHh
Q psy7411 416 ---EMGKVRESLGLCPQYDLLFEELTVEDHLQFFA-KGKEFNGITYGRALLLMMSYV 468 (474)
Q Consensus 416 ---~~~~ir~~IG~~~Q~~~L~~~LTV~E~L~~~~-~lkg~~~~~~~~~l~~~~~~~ 468 (474)
.....++.++|+||++.+++.+|++||+.+.. ...+...++..+++.++++.+
T Consensus 83 ~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~ 139 (257)
T PRK10619 83 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKV 139 (257)
T ss_pred cchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Confidence 12345678999999999999999999998643 334455555556666666553
No 77
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.82 E-value=1.6e-19 Score=175.83 Aligned_cols=118 Identities=29% Similarity=0.476 Sum_probs=96.6
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcc--hHHhhcceE
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYE--MGKVRESLG 425 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~--~~~ir~~IG 425 (474)
.++++|+++.| +++.+++++||++++||+++|+||||||||||+++|+|+.+|++|++.++|+++... ....|+.++
T Consensus 3 ~l~~~~l~~~~-~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 81 (241)
T PRK10895 3 TLTAKNLAKAY-KGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIG 81 (241)
T ss_pred eEEEeCcEEEe-CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeE
Confidence 47899999999 457899999999999999999999999999999999999999999999999988532 123467799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHhcC-CCCHHHHHHHHHHHHh
Q psy7411 426 LCPQYDLLFEELTVEDHLQFFAKGK-EFNGITYGRALLLMMS 466 (474)
Q Consensus 426 ~~~Q~~~L~~~LTV~E~L~~~~~lk-g~~~~~~~~~l~~~~~ 466 (474)
|++|++.+++.+|+.||+.+..... +.+.++..+.+++.++
T Consensus 82 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~ 123 (241)
T PRK10895 82 YLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELME 123 (241)
T ss_pred EeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHH
Confidence 9999999999999999998765443 2333334444444443
No 78
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.82 E-value=1.4e-19 Score=180.02 Aligned_cols=121 Identities=28% Similarity=0.415 Sum_probs=100.7
Q ss_pred ccEEEEeeEEEEc-CCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chHHhhcce
Q psy7411 347 SGIQLRGLTKIYK-TGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMGKVRESL 424 (474)
Q Consensus 347 ~~I~i~~Lsk~y~-~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~~ir~~I 424 (474)
..++++|+++.|+ +++++++++||++.+||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ...++|+.+
T Consensus 6 ~~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 85 (271)
T PRK13632 6 VMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI 85 (271)
T ss_pred eEEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence 4689999999995 24679999999999999999999999999999999999999999999999999863 334567789
Q ss_pred EEEcCCCC-CCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhH
Q psy7411 425 GLCPQYDL-LFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSY 467 (474)
Q Consensus 425 G~~~Q~~~-L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~ 467 (474)
||++|++. .++.+|++||+.+.....+.+.++..+++++++..
T Consensus 86 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~ 129 (271)
T PRK13632 86 GIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKK 129 (271)
T ss_pred EEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHH
Confidence 99999973 66778999999886655555555555566666654
No 79
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=1.9e-19 Score=179.56 Aligned_cols=120 Identities=29% Similarity=0.328 Sum_probs=98.8
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chHHhhcceEE
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMGKVRESLGL 426 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~~ir~~IG~ 426 (474)
.++++|+++.|++.+.+++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ...++++.+||
T Consensus 4 ~l~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 83 (274)
T PRK13647 4 IIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGL 83 (274)
T ss_pred eEEEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEE
Confidence 57899999999534679999999999999999999999999999999999999999999999999863 33455678999
Q ss_pred EcCCCC-CCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhH
Q psy7411 427 CPQYDL-LFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSY 467 (474)
Q Consensus 427 ~~Q~~~-L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~ 467 (474)
++|++. .+...||.||+.+.....+.+.++..+++.+++..
T Consensus 84 v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~ 125 (274)
T PRK13647 84 VFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKA 125 (274)
T ss_pred EecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHH
Confidence 999862 34457999999986655566665555556655543
No 80
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=1.5e-19 Score=180.67 Aligned_cols=120 Identities=28% Similarity=0.389 Sum_probs=102.0
Q ss_pred cEEEEeeEEEEcC--CceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chHHhhcce
Q psy7411 348 GIQLRGLTKIYKT--GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMGKVRESL 424 (474)
Q Consensus 348 ~I~i~~Lsk~y~~--~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~~ir~~I 424 (474)
.++++|+++.|++ .+.+++++||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|+++.. ...++|+.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 5789999999953 2469999999999999999999999999999999999999999999999999864 344567789
Q ss_pred EEEcCCC-CCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhH
Q psy7411 425 GLCPQYD-LLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSY 467 (474)
Q Consensus 425 G~~~Q~~-~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~ 467 (474)
||++|++ .++..+||+||+.+.....|.+.++..+++++++..
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~ 127 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALEL 127 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHH
Confidence 9999997 467778999999987666677777766667766654
No 81
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.81 E-value=1.4e-19 Score=175.71 Aligned_cols=98 Identities=37% Similarity=0.567 Sum_probs=86.9
Q ss_pred EEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcc----hHHhhcce
Q psy7411 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYE----MGKVRESL 424 (474)
Q Consensus 349 I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~----~~~ir~~I 424 (474)
++++|+++.|++++++++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++... ....++.+
T Consensus 1 l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 80 (241)
T cd03256 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQI 80 (241)
T ss_pred CEEeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhcc
Confidence 36899999994326899999999999999999999999999999999999999999999999987532 33456789
Q ss_pred EEEcCCCCCCCCCCHHHHHHHH
Q psy7411 425 GLCPQYDLLFEELTVEDHLQFF 446 (474)
Q Consensus 425 G~~~Q~~~L~~~LTV~E~L~~~ 446 (474)
+|+||++.+++.+|++||+.+.
T Consensus 81 ~~~~q~~~~~~~~tv~~~l~~~ 102 (241)
T cd03256 81 GMIFQQFNLIERLSVLENVLSG 102 (241)
T ss_pred EEEcccCcccccCcHHHHHHhh
Confidence 9999999999999999999764
No 82
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=2.2e-19 Score=174.97 Aligned_cols=118 Identities=30% Similarity=0.377 Sum_probs=97.8
Q ss_pred EEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-------chHHhh
Q psy7411 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-------EMGKVR 421 (474)
Q Consensus 349 I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-------~~~~ir 421 (474)
++++|+++.| +++.+++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. .....+
T Consensus 3 l~~~~l~~~~-~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 81 (242)
T PRK11124 3 IQLNGINCFY-GAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELR 81 (242)
T ss_pred EEEEeeEEEE-CCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHH
Confidence 6899999999 45789999999999999999999999999999999999999999999999998731 123556
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHH-HHhcCCCCHHHHHHHHHHHHhH
Q psy7411 422 ESLGLCPQYDLLFEELTVEDHLQF-FAKGKEFNGITYGRALLLMMSY 467 (474)
Q Consensus 422 ~~IG~~~Q~~~L~~~LTV~E~L~~-~~~lkg~~~~~~~~~l~~~~~~ 467 (474)
+.++|+||++.+++.+|+.||+.+ .....+.+.++..+++.+++..
T Consensus 82 ~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~ 128 (242)
T PRK11124 82 RNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLER 128 (242)
T ss_pred hheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 789999999999999999999975 3344555555555555555544
No 83
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.81 E-value=1.3e-19 Score=172.38 Aligned_cols=98 Identities=21% Similarity=0.365 Sum_probs=88.7
Q ss_pred EEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEEEc
Q psy7411 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCP 428 (474)
Q Consensus 349 I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~~ 428 (474)
++++|+++.| +++.+++++||++++||+++|+|+||||||||+++|+|+.+|++|++.++|+++.......++.++|++
T Consensus 1 l~i~~l~~~~-~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (201)
T cd03231 1 LEADELTCER-DGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLG 79 (201)
T ss_pred CEEEEEEEEe-CCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEec
Confidence 4689999999 457899999999999999999999999999999999999999999999999987644445677899999
Q ss_pred CCCCCCCCCCHHHHHHHHH
Q psy7411 429 QYDLLFEELTVEDHLQFFA 447 (474)
Q Consensus 429 Q~~~L~~~LTV~E~L~~~~ 447 (474)
|++.+++.+|++||+.++.
T Consensus 80 q~~~~~~~~tv~e~l~~~~ 98 (201)
T cd03231 80 HAPGIKTTLSVLENLRFWH 98 (201)
T ss_pred cccccCCCcCHHHHHHhhc
Confidence 9999998999999998864
No 84
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.81 E-value=2.2e-19 Score=172.41 Aligned_cols=118 Identities=24% Similarity=0.383 Sum_probs=95.2
Q ss_pred EEEEeeEEEEcCC---ceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcc-h---HHhh
Q psy7411 349 IQLRGLTKIYKTG---KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYE-M---GKVR 421 (474)
Q Consensus 349 I~i~~Lsk~y~~~---~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~-~---~~ir 421 (474)
++++|+++.|++. +++++++||++++||+++|+||||||||||+++|+|+.+|++|++.++|+++... . ...|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 6789999999531 4799999999999999999999999999999999999999999999999987531 1 1233
Q ss_pred -cceEEEcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q psy7411 422 -ESLGLCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMS 466 (474)
Q Consensus 422 -~~IG~~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~ 466 (474)
+.++|++|++.+++.+|++||+.+....++.+..+..+++.+++.
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~ 127 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLE 127 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 579999999999999999999988655444444444444444444
No 85
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=1.6e-19 Score=181.57 Aligned_cols=119 Identities=27% Similarity=0.405 Sum_probs=99.8
Q ss_pred EEEEeeEEEEcCC----ceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-----chHH
Q psy7411 349 IQLRGLTKIYKTG----KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-----EMGK 419 (474)
Q Consensus 349 I~i~~Lsk~y~~~----~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-----~~~~ 419 (474)
++++|+++.|++. +++|+++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ...+
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 6899999999532 469999999999999999999999999999999999999999999999998842 2345
Q ss_pred hhcceEEEcCCC--CCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhHh
Q psy7411 420 VRESLGLCPQYD--LLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSYV 468 (474)
Q Consensus 420 ir~~IG~~~Q~~--~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~~ 468 (474)
.|+.+|||||++ .+++ .||+||+.+.....+.+.++..+++++++..+
T Consensus 83 ~~~~ig~v~q~~~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~ 132 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFE-ETVEKDICFGPMNFGVSEEDAKQKAREMIELV 132 (290)
T ss_pred HHhhEEEEeeCchhhhhh-hhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 677899999985 4554 69999999876666777777666677766543
No 86
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.81 E-value=2.3e-19 Score=175.54 Aligned_cols=119 Identities=19% Similarity=0.262 Sum_probs=98.3
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcc---------hH
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYE---------MG 418 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~---------~~ 418 (474)
.++++|+++.| +++.+++++||++++||+++|+||||||||||+++|+|+.+|++|++.++|+++... ..
T Consensus 3 ~l~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (250)
T PRK11264 3 AIEVKNLVKKF-HGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIR 81 (250)
T ss_pred cEEEeceEEEE-CCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHH
Confidence 47899999999 456899999999999999999999999999999999999999999999999987521 23
Q ss_pred HhhcceEEEcCCCCCCCCCCHHHHHHHHHh-cCCCCHHHHHHHHHHHHhH
Q psy7411 419 KVRESLGLCPQYDLLFEELTVEDHLQFFAK-GKEFNGITYGRALLLMMSY 467 (474)
Q Consensus 419 ~ir~~IG~~~Q~~~L~~~LTV~E~L~~~~~-lkg~~~~~~~~~l~~~~~~ 467 (474)
..++.+||+||++.+++.+|+.||+.+... .++...++..+++.+++++
T Consensus 82 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~ 131 (250)
T PRK11264 82 QLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAK 131 (250)
T ss_pred HhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 456789999999999998999999987533 3444555555555555554
No 87
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.81 E-value=2.2e-19 Score=173.64 Aligned_cols=104 Identities=28% Similarity=0.430 Sum_probs=90.2
Q ss_pred EEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcc-h-HHhhcceEE
Q psy7411 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYE-M-GKVRESLGL 426 (474)
Q Consensus 349 I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~-~-~~ir~~IG~ 426 (474)
++++|+++.| +++++++++||++++||+++|+|+||||||||+++|+|+.+|++|++.++|+++... . ...++.++|
T Consensus 1 l~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (230)
T TIGR03410 1 LEVSNLNVYY-GQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAY 79 (230)
T ss_pred CEEEeEEEEe-CCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEE
Confidence 4689999999 457899999999999999999999999999999999999999999999999987632 2 223567999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHhcCCCC
Q psy7411 427 CPQYDLLFEELTVEDHLQFFAKGKEFN 453 (474)
Q Consensus 427 ~~Q~~~L~~~LTV~E~L~~~~~lkg~~ 453 (474)
+||++.+++.+|+.||+.+.....+..
T Consensus 80 ~~q~~~~~~~~tv~~~l~~~~~~~~~~ 106 (230)
T TIGR03410 80 VPQGREIFPRLTVEENLLTGLAALPRR 106 (230)
T ss_pred eccCCcccCCCcHHHHHHHHHHhcCcc
Confidence 999999999999999998875554443
No 88
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=2e-19 Score=179.98 Aligned_cols=121 Identities=23% Similarity=0.353 Sum_probs=100.8
Q ss_pred ccEEEEeeEEEEcC-CceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chHHhhcce
Q psy7411 347 SGIQLRGLTKIYKT-GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMGKVRESL 424 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~-~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~~ir~~I 424 (474)
..++++|+++.|++ .+++++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ...+.++.+
T Consensus 4 ~~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 4 EIIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred ceEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 35899999999953 3579999999999999999999999999999999999999999999999999864 234556789
Q ss_pred EEEcCCC-CCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhH
Q psy7411 425 GLCPQYD-LLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSY 467 (474)
Q Consensus 425 G~~~Q~~-~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~ 467 (474)
||++|++ .++..+|+.||+.+.....+.+.++..+++++++..
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~ 127 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQ 127 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHH
Confidence 9999997 366678999999887666666666655666665554
No 89
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.81 E-value=2.4e-19 Score=171.32 Aligned_cols=112 Identities=27% Similarity=0.364 Sum_probs=94.6
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEEE
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLC 427 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~ 427 (474)
.++++|++|.| +++.+++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. . ..++.++++
T Consensus 2 ~l~~~~l~~~~-~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~-~-~~~~~~~~~ 78 (207)
T PRK13539 2 MLEGEDLACVR-GGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD-P-DVAEACHYL 78 (207)
T ss_pred EEEEEeEEEEE-CCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc-h-hhHhhcEEe
Confidence 37899999999 45689999999999999999999999999999999999999999999999998642 2 267789999
Q ss_pred cCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHH
Q psy7411 428 PQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALL 462 (474)
Q Consensus 428 ~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~ 462 (474)
+|++.+++.+|+.||+.+....++...+++.+.++
T Consensus 79 ~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~ 113 (207)
T PRK13539 79 GHRNAMKPALTVAENLEFWAAFLGGEELDIAAALE 113 (207)
T ss_pred cCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 99988888999999998876655544444444443
No 90
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=2.8e-19 Score=175.42 Aligned_cols=118 Identities=23% Similarity=0.343 Sum_probs=96.0
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCC-----CeeEEEECCeecCc---chHH
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIP-----TSGTAYIDGHDIWY---EMGK 419 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~P-----tsG~i~i~G~dI~~---~~~~ 419 (474)
.++++|+++.| +++++++++||++.+||+++|+||||||||||+++|+|+.+| ++|+|.++|+++.. ...+
T Consensus 4 ~l~~~~l~~~~-~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 82 (253)
T PRK14267 4 AIETVNLRVYY-GSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIE 82 (253)
T ss_pred eEEEEeEEEEe-CCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHH
Confidence 47899999999 456899999999999999999999999999999999999987 49999999998851 2335
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHHhcCCC--CHHHHHHHHHHHHh
Q psy7411 420 VRESLGLCPQYDLLFEELTVEDHLQFFAKGKEF--NGITYGRALLLMMS 466 (474)
Q Consensus 420 ir~~IG~~~Q~~~L~~~LTV~E~L~~~~~lkg~--~~~~~~~~l~~~~~ 466 (474)
.|+.++|++|++.+++.+|+.||+.+....++. +.++..+++++++.
T Consensus 83 ~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~ 131 (253)
T PRK14267 83 VRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALK 131 (253)
T ss_pred HhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHH
Confidence 677899999999999999999999886544432 33333344444433
No 91
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=2e-19 Score=188.82 Aligned_cols=119 Identities=27% Similarity=0.301 Sum_probs=95.8
Q ss_pred EEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcc-hH---Hh-hcc
Q psy7411 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYE-MG---KV-RES 423 (474)
Q Consensus 349 I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~-~~---~i-r~~ 423 (474)
++..++.+.| +...+++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... .. +. +++
T Consensus 29 ~~~~~~~~~~-~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~ 107 (400)
T PRK10070 29 LSKEQILEKT-GLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKK 107 (400)
T ss_pred ccHHHHHhhc-CCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCC
Confidence 3334444444 234589999999999999999999999999999999999999999999999998632 11 22 357
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhHh
Q psy7411 424 LGLCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSYV 468 (474)
Q Consensus 424 IG~~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~~ 468 (474)
+||++|++.+++.+|++||+.+....+|.+.++..+++.+++..+
T Consensus 108 igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~ 152 (400)
T PRK10070 108 IAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQV 152 (400)
T ss_pred EEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc
Confidence 999999999999999999999987777777666666666666543
No 92
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.81 E-value=2.9e-19 Score=177.53 Aligned_cols=119 Identities=22% Similarity=0.412 Sum_probs=97.1
Q ss_pred ccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcc----hHHhhc
Q psy7411 347 SGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYE----MGKVRE 422 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~----~~~ir~ 422 (474)
..++++|+++.| +++.+++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++... ....++
T Consensus 6 ~~l~~~~l~~~~-~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 84 (269)
T PRK11831 6 NLVDMRGVSFTR-GNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRK 84 (269)
T ss_pred ceEEEeCeEEEE-CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhh
Confidence 468999999999 567899999999999999999999999999999999999999999999999987531 223466
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHHhcC-CCCHHHHHHHHHHHHh
Q psy7411 423 SLGLCPQYDLLFEELTVEDHLQFFAKGK-EFNGITYGRALLLMMS 466 (474)
Q Consensus 423 ~IG~~~Q~~~L~~~LTV~E~L~~~~~lk-g~~~~~~~~~l~~~~~ 466 (474)
.++|+||+..+++.+|+.||+.+..... +.+.++..+++.+++.
T Consensus 85 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~ 129 (269)
T PRK11831 85 RMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLE 129 (269)
T ss_pred cEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHH
Confidence 7999999999999999999998754332 3344444444555444
No 93
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=3e-19 Score=174.85 Aligned_cols=119 Identities=24% Similarity=0.380 Sum_probs=98.0
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCC-----CeeEEEECCeecCc-chHHhh
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIP-----TSGTAYIDGHDIWY-EMGKVR 421 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~P-----tsG~i~i~G~dI~~-~~~~ir 421 (474)
.++++|+++.| +++.+++++||++++||+++|+||||||||||+++|+|+.+| ++|+|.++|+++.. ...+.|
T Consensus 3 ~l~~~~l~~~~-~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 81 (250)
T PRK14247 3 KIEIRDLKVSF-GQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELR 81 (250)
T ss_pred eEEEEeeEEEE-CCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHh
Confidence 47899999999 456899999999999999999999999999999999999874 79999999998853 334567
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHHhcCCC--CHHHHHHHHHHHHhH
Q psy7411 422 ESLGLCPQYDLLFEELTVEDHLQFFAKGKEF--NGITYGRALLLMMSY 467 (474)
Q Consensus 422 ~~IG~~~Q~~~L~~~LTV~E~L~~~~~lkg~--~~~~~~~~l~~~~~~ 467 (474)
+.+||++|++.+++.+|+.||+.+.....+. +.++..+++.+++..
T Consensus 82 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~ 129 (250)
T PRK14247 82 RRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEK 129 (250)
T ss_pred ccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHH
Confidence 7899999999888899999999886544332 334445555555554
No 94
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.81 E-value=3e-19 Score=176.44 Aligned_cols=118 Identities=22% Similarity=0.334 Sum_probs=95.3
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chHHhhcceEE
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMGKVRESLGL 426 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~~ir~~IG~ 426 (474)
.++++|+++.| +++.+++++||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|+++.. ...+.++.+||
T Consensus 2 ~l~~~~l~~~~-~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (258)
T PRK13548 2 MLEARNLSVRL-GGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAV 80 (258)
T ss_pred eEEEEeEEEEe-CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEE
Confidence 47899999999 45789999999999999999999999999999999999999999999999998753 23345667999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q psy7411 427 CPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMS 466 (474)
Q Consensus 427 ~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~ 466 (474)
++|++.+++.+|++||+.+.....+...++..+++++.++
T Consensus 81 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~ 120 (258)
T PRK13548 81 LPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALA 120 (258)
T ss_pred EccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHH
Confidence 9999888888999999988654433332333333444433
No 95
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.81 E-value=1.2e-19 Score=172.71 Aligned_cols=109 Identities=30% Similarity=0.426 Sum_probs=87.8
Q ss_pred EEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEEEcCC
Q psy7411 351 LRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQY 430 (474)
Q Consensus 351 i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~~Q~ 430 (474)
++|+++.|++.+.+++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ...++.+||++|+
T Consensus 2 ~~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~--~~~~~~i~~~~q~ 79 (205)
T cd03226 2 IENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA--KERRKSIGYVMQD 79 (205)
T ss_pred cccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh--HHhhcceEEEecC
Confidence 67999999432689999999999999999999999999999999999999999999999998753 3456789999999
Q ss_pred CC-CCCCCCHHHHHHHHHhcCCCCHHHHHHHH
Q psy7411 431 DL-LFEELTVEDHLQFFAKGKEFNGITYGRAL 461 (474)
Q Consensus 431 ~~-L~~~LTV~E~L~~~~~lkg~~~~~~~~~l 461 (474)
+. .+..+|++||+.+.....+...+++.+.+
T Consensus 80 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l 111 (205)
T cd03226 80 VDYQLFTDSVREELLLGLKELDAGNEQAETVL 111 (205)
T ss_pred hhhhhhhccHHHHHhhhhhhcCccHHHHHHHH
Confidence 64 23457999999886554443223333333
No 96
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.81 E-value=4.3e-19 Score=175.03 Aligned_cols=119 Identities=23% Similarity=0.355 Sum_probs=97.7
Q ss_pred cccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCC-----CeeEEEECCeecCcc---h
Q psy7411 346 ASGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIP-----TSGTAYIDGHDIWYE---M 417 (474)
Q Consensus 346 ~~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~P-----tsG~i~i~G~dI~~~---~ 417 (474)
...++++|+++.| +++.+++++||++++||+++|+|+||||||||+++|+|+.+| ++|+|.++|+++... .
T Consensus 10 ~~~l~~~~l~~~~-~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 88 (258)
T PRK14268 10 QPQIKVENLNLWY-GEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDV 88 (258)
T ss_pred ceeEEEeeeEEEe-CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchH
Confidence 3468999999999 457899999999999999999999999999999999999875 899999999987531 2
Q ss_pred HHhhcceEEEcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q psy7411 418 GKVRESLGLCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMS 466 (474)
Q Consensus 418 ~~ir~~IG~~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~ 466 (474)
...++.+||++|++.+++ +|++||+.+....++.+.++..+++++.+.
T Consensus 89 ~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~l~ 136 (258)
T PRK14268 89 VELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIHGANKKDLDGVVENALR 136 (258)
T ss_pred HHHhhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 345677999999998888 899999998765556555544444444444
No 97
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.81 E-value=3.5e-19 Score=173.45 Aligned_cols=99 Identities=32% Similarity=0.486 Sum_probs=87.8
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcc-hHH-hhcceE
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYE-MGK-VRESLG 425 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~-~~~-ir~~IG 425 (474)
.++++|+++.| +++++++++||++++||+++|+||||||||||+++|+|+.+|++|++.++|+++... ..+ .++.++
T Consensus 2 ~i~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (242)
T TIGR03411 2 ILYLEGLSVSF-DGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIG 80 (242)
T ss_pred eEEEEeeEEEc-CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCee
Confidence 47899999999 456899999999999999999999999999999999999999999999999987532 222 345699
Q ss_pred EEcCCCCCCCCCCHHHHHHHHH
Q psy7411 426 LCPQYDLLFEELTVEDHLQFFA 447 (474)
Q Consensus 426 ~~~Q~~~L~~~LTV~E~L~~~~ 447 (474)
|++|++.+++.+|++||+.+..
T Consensus 81 ~~~q~~~~~~~~tv~~nl~~~~ 102 (242)
T TIGR03411 81 RKFQKPTVFENLTVFENLELAL 102 (242)
T ss_pred EeccccccCCCCCHHHHHHHhh
Confidence 9999999999999999998854
No 98
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=3e-19 Score=179.45 Aligned_cols=118 Identities=25% Similarity=0.392 Sum_probs=99.3
Q ss_pred EEEEeeEEEEcCC----ceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-----chHH
Q psy7411 349 IQLRGLTKIYKTG----KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-----EMGK 419 (474)
Q Consensus 349 I~i~~Lsk~y~~~----~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-----~~~~ 419 (474)
++++|+++.|++. +.+++++||++++||+++|+||||||||||+++|+|+++|++|++.++|.++.. ...+
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 6899999999522 259999999999999999999999999999999999999999999999999842 2345
Q ss_pred hhcceEEEcCCC--CCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhH
Q psy7411 420 VRESLGLCPQYD--LLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSY 467 (474)
Q Consensus 420 ir~~IG~~~Q~~--~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~ 467 (474)
.|+.+||++|++ .+++ .||.||+.+.....|.++++..+++.+++..
T Consensus 82 ~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 130 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNFGIPKEKAEKIAAEKLEM 130 (288)
T ss_pred HHhhEEEEecCcchhccc-chHHHHHHhHHHHcCCCHHHHHHHHHHHHHH
Confidence 678899999986 5665 5999999987766677777776666666654
No 99
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=2.5e-19 Score=179.68 Aligned_cols=118 Identities=26% Similarity=0.396 Sum_probs=98.8
Q ss_pred EEEEeeEEEEcCC----ceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-----chHH
Q psy7411 349 IQLRGLTKIYKTG----KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-----EMGK 419 (474)
Q Consensus 349 I~i~~Lsk~y~~~----~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-----~~~~ 419 (474)
++++|+++.|++. +++++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ...+
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 6899999999522 369999999999999999999999999999999999999999999999999853 2345
Q ss_pred hhcceEEEcCCC--CCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhH
Q psy7411 420 VRESLGLCPQYD--LLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSY 467 (474)
Q Consensus 420 ir~~IG~~~Q~~--~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~ 467 (474)
+|+.+|||||++ .+++ .|+.||+.+.....+.+.++..+++.+++..
T Consensus 83 ~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~ 131 (286)
T PRK13646 83 VRKRIGMVFQFPESQLFE-DTVEREIIFGPKNFKMNLDEVKNYAHRLLMD 131 (286)
T ss_pred HHhheEEEecChHhccch-hhHHHHHHhhHHHcCCCHHHHHHHHHHHHHH
Confidence 778899999985 4665 4999999987666677776666666666554
No 100
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.81 E-value=4.3e-19 Score=174.90 Aligned_cols=119 Identities=22% Similarity=0.330 Sum_probs=98.0
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCC-----CeeEEEECCeecCc---chHH
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIP-----TSGTAYIDGHDIWY---EMGK 419 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~P-----tsG~i~i~G~dI~~---~~~~ 419 (474)
.++++|+++.| +++++++++||++++||+++|+||||||||||+++|+|+.+| ++|+|.++|+++.. ....
T Consensus 4 ~l~i~~v~~~~-~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~ 82 (258)
T PRK14241 4 RIDVKDLNIYY-GSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVA 82 (258)
T ss_pred cEEEeeEEEEE-CCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHH
Confidence 47899999999 456899999999999999999999999999999999999874 79999999998742 2345
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHHhcCCC-CHHHHHHHHHHHHhH
Q psy7411 420 VRESLGLCPQYDLLFEELTVEDHLQFFAKGKEF-NGITYGRALLLMMSY 467 (474)
Q Consensus 420 ir~~IG~~~Q~~~L~~~LTV~E~L~~~~~lkg~-~~~~~~~~l~~~~~~ 467 (474)
.++.+||++|++.+++.+|++||+.+....++. +.++..+++++++..
T Consensus 83 ~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~ 131 (258)
T PRK14241 83 VRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRG 131 (258)
T ss_pred HhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 677899999999999999999999886655443 344455555555543
No 101
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=3.7e-19 Score=178.28 Aligned_cols=121 Identities=26% Similarity=0.377 Sum_probs=99.8
Q ss_pred ccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc---chHHhhcc
Q psy7411 347 SGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY---EMGKVRES 423 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~---~~~~ir~~ 423 (474)
..++++|+++.|++++.+++++||++++||+++|+|+||||||||+++|+|+.+|++|++.++|+++.. ...++++.
T Consensus 4 ~~l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ 83 (283)
T PRK13636 4 YILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRES 83 (283)
T ss_pred ceEEEEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhh
Confidence 358999999999534679999999999999999999999999999999999999999999999999842 23456778
Q ss_pred eEEEcCCCC-CCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhH
Q psy7411 424 LGLCPQYDL-LFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSY 467 (474)
Q Consensus 424 IG~~~Q~~~-L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~ 467 (474)
+||+||++. .+...|++||+.+.....+.+.++..+++++.+..
T Consensus 84 ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~ 128 (283)
T PRK13636 84 VGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKR 128 (283)
T ss_pred EEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHH
Confidence 999999863 23357999999886655566666666666666554
No 102
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.81 E-value=2.5e-19 Score=188.16 Aligned_cols=99 Identities=24% Similarity=0.381 Sum_probs=90.7
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chHHhhcceEE
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMGKVRESLGL 426 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~~ir~~IG~ 426 (474)
.++++|+++.| +++++++++||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. ...+.++++|+
T Consensus 3 ~L~~~nls~~y-~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~ 81 (402)
T PRK09536 3 MIDVSDLSVEF-GDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVAS 81 (402)
T ss_pred eEEEeeEEEEE-CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEE
Confidence 47899999999 56789999999999999999999999999999999999999999999999999874 44566788999
Q ss_pred EcCCCCCCCCCCHHHHHHHHH
Q psy7411 427 CPQYDLLFEELTVEDHLQFFA 447 (474)
Q Consensus 427 ~~Q~~~L~~~LTV~E~L~~~~ 447 (474)
++|+..++..+|++||+.+..
T Consensus 82 v~q~~~l~~~~tv~e~v~~~~ 102 (402)
T PRK09536 82 VPQDTSLSFEFDVRQVVEMGR 102 (402)
T ss_pred EccCCCCCCCCCHHHHHHhcc
Confidence 999999989999999998753
No 103
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.81 E-value=4.3e-19 Score=177.14 Aligned_cols=120 Identities=28% Similarity=0.351 Sum_probs=97.3
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chHHhhcceEE
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMGKVRESLGL 426 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~~ir~~IG~ 426 (474)
.++++|+++.|++.+.+++++||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|+++.. ...+.++.+||
T Consensus 3 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (277)
T PRK13652 3 LIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGL 82 (277)
T ss_pred eEEEEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEE
Confidence 47899999999534569999999999999999999999999999999999999999999999998864 34456778999
Q ss_pred EcCCCC-CCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhH
Q psy7411 427 CPQYDL-LFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSY 467 (474)
Q Consensus 427 ~~Q~~~-L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~ 467 (474)
++|++. .+...|+.||+.+.....+.+.++..+++.+++..
T Consensus 83 v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 124 (277)
T PRK13652 83 VFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHM 124 (277)
T ss_pred EecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHH
Confidence 999963 23357999999876554555655555555555543
No 104
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.80 E-value=4.5e-19 Score=174.03 Aligned_cols=118 Identities=19% Similarity=0.292 Sum_probs=97.2
Q ss_pred EEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcc------------
Q psy7411 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYE------------ 416 (474)
Q Consensus 349 I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~------------ 416 (474)
++++|+++.| +++.+++++||++++||+++|+||||||||||+++|+|+.+|++|++.++|+++...
T Consensus 1 i~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ 79 (252)
T TIGR03005 1 VRFSDVTKRF-GILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADE 79 (252)
T ss_pred CEEEEEEEEe-CCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccch
Confidence 4689999999 457899999999999999999999999999999999999999999999999987421
Q ss_pred --hHHhhcceEEEcCCCCCCCCCCHHHHHHHHHh-cCCCCHHHHHHHHHHHHhH
Q psy7411 417 --MGKVRESLGLCPQYDLLFEELTVEDHLQFFAK-GKEFNGITYGRALLLMMSY 467 (474)
Q Consensus 417 --~~~ir~~IG~~~Q~~~L~~~LTV~E~L~~~~~-lkg~~~~~~~~~l~~~~~~ 467 (474)
....++.+++++|++.+++.+|+.||+.+... .++...++..+++++++..
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~ 133 (252)
T TIGR03005 80 KHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDM 133 (252)
T ss_pred hHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 13456789999999999999999999987532 3445555555555655544
No 105
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.80 E-value=2.5e-19 Score=174.41 Aligned_cols=98 Identities=32% Similarity=0.551 Sum_probs=86.9
Q ss_pred EEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcc----hHHhhcce
Q psy7411 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYE----MGKVRESL 424 (474)
Q Consensus 349 I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~----~~~ir~~I 424 (474)
++++|+++.|++++++++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++... ....++.+
T Consensus 2 l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 81 (243)
T TIGR02315 2 LEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRI 81 (243)
T ss_pred eEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhhe
Confidence 67899999994256799999999999999999999999999999999999999999999999987531 23356789
Q ss_pred EEEcCCCCCCCCCCHHHHHHHH
Q psy7411 425 GLCPQYDLLFEELTVEDHLQFF 446 (474)
Q Consensus 425 G~~~Q~~~L~~~LTV~E~L~~~ 446 (474)
||+||++.+++.+|++||+.+.
T Consensus 82 ~~v~q~~~~~~~~tv~~~l~~~ 103 (243)
T TIGR02315 82 GMIFQHYNLIERLTVLENVLHG 103 (243)
T ss_pred EEEcCCCcccccccHHHHHhhc
Confidence 9999999999999999999763
No 106
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.80 E-value=2.2e-19 Score=176.91 Aligned_cols=118 Identities=29% Similarity=0.384 Sum_probs=91.8
Q ss_pred ccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEE
Q psy7411 347 SGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGL 426 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~ 426 (474)
..++++|++..|++. ++|+|+||++++|++++|+||||||||||+|++.|+++|++|+|.+.|+++..... +.+|||
T Consensus 3 ~~i~v~nl~v~y~~~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~--~~~IgY 79 (254)
T COG1121 3 PMIEVENLTVSYGNR-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK--RLRIGY 79 (254)
T ss_pred cEEEEeeeEEEECCE-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc--CCeEEE
Confidence 358999999999533 79999999999999999999999999999999999999999999999998754321 467999
Q ss_pred EcCCCC--CCCCCCHHHHHHHHHhcC-----CCCHHHHHHHHHHHHhHh
Q psy7411 427 CPQYDL--LFEELTVEDHLQFFAKGK-----EFNGITYGRALLLMMSYV 468 (474)
Q Consensus 427 ~~Q~~~--L~~~LTV~E~L~~~~~lk-----g~~~~~~~~~l~~~~~~~ 468 (474)
|||... .-..+||+|-+......+ ..++++ .+++++.+.+|
T Consensus 80 VPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d-~~~v~~aL~~V 127 (254)
T COG1121 80 VPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKD-KEKVDEALERV 127 (254)
T ss_pred cCcccccCCCCCcCHHHHHHccCcccccccccccHHH-HHHHHHHHHHc
Confidence 999643 223469999999863222 223333 55555555543
No 107
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=4.2e-19 Score=178.16 Aligned_cols=119 Identities=32% Similarity=0.487 Sum_probs=97.0
Q ss_pred cEEEEeeEEEEcCC----ceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-----chH
Q psy7411 348 GIQLRGLTKIYKTG----KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-----EMG 418 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~----~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-----~~~ 418 (474)
.++++|+++.|++. +.+++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ...
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 36899999999522 469999999999999999999999999999999999999999999999998853 134
Q ss_pred HhhcceEEEcCCC--CCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhH
Q psy7411 419 KVRESLGLCPQYD--LLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSY 467 (474)
Q Consensus 419 ~ir~~IG~~~Q~~--~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~ 467 (474)
+.++.+||++|++ .++ .+|+.||+.+.....+...++..+++++++..
T Consensus 82 ~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~ 131 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKK 131 (287)
T ss_pred HHHhceEEEEeChhhhhc-cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 5567899999986 355 57999999876555566666655556655554
No 108
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=5e-19 Score=176.54 Aligned_cols=118 Identities=28% Similarity=0.445 Sum_probs=96.6
Q ss_pred EEEEeeEEEEcCC----ceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-----chHH
Q psy7411 349 IQLRGLTKIYKTG----KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-----EMGK 419 (474)
Q Consensus 349 I~i~~Lsk~y~~~----~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-----~~~~ 419 (474)
++++|+++.|++. +++++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ...+
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 7899999999532 469999999999999999999999999999999999999999999999998753 2345
Q ss_pred hhcceEEEcCCC--CCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhH
Q psy7411 420 VRESLGLCPQYD--LLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSY 467 (474)
Q Consensus 420 ir~~IG~~~Q~~--~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~ 467 (474)
.|+.+||++|++ .+++ .|++||+.+.....+.+.++..+.+++++..
T Consensus 83 ~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~ 131 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNFGVSQEEAEALAREKLAL 131 (280)
T ss_pred HHhheEEEeeChhhhhcc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 677899999986 4565 6999999987655555555555555555544
No 109
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.80 E-value=6.5e-19 Score=172.79 Aligned_cols=118 Identities=22% Similarity=0.371 Sum_probs=95.6
Q ss_pred ccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCC-----CCeeEEEECCeecCc---chH
Q psy7411 347 SGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLII-----PTSGTAYIDGHDIWY---EMG 418 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~-----PtsG~i~i~G~dI~~---~~~ 418 (474)
+.++++|+++.| +++.+++++||++++||+++|+||||||||||+++|+|+.+ |++|++.++|+++.. ...
T Consensus 5 ~~l~~~~l~~~~-~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 83 (253)
T PRK14242 5 PKMEARGLSFFY-GDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVV 83 (253)
T ss_pred cEEEEeeeEEEE-CCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHH
Confidence 468999999999 45689999999999999999999999999999999999864 689999999998853 233
Q ss_pred HhhcceEEEcCCCCCCCCCCHHHHHHHHHhcCCC-CHHHHHHHHHHHHh
Q psy7411 419 KVRESLGLCPQYDLLFEELTVEDHLQFFAKGKEF-NGITYGRALLLMMS 466 (474)
Q Consensus 419 ~ir~~IG~~~Q~~~L~~~LTV~E~L~~~~~lkg~-~~~~~~~~l~~~~~ 466 (474)
..|+.+||++|++.+++ .|++||+.+....++. +.++..+++++++.
T Consensus 84 ~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~ 131 (253)
T PRK14242 84 ELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNGVKDKAYLAERVERSLR 131 (253)
T ss_pred HHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 55778999999998888 4999999886555554 23334445554444
No 110
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.80 E-value=3.4e-19 Score=173.66 Aligned_cols=111 Identities=26% Similarity=0.427 Sum_probs=92.0
Q ss_pred EEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEEEc-CCCCCC
Q psy7411 356 KIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCP-QYDLLF 434 (474)
Q Consensus 356 k~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~~-Q~~~L~ 434 (474)
+.| +.+++++++||++++||+++|+|+||||||||+++|+|+.+|++|++.++|+++.......++.++|++ |++.++
T Consensus 29 ~~~-~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 107 (236)
T cd03267 29 RKY-REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLW 107 (236)
T ss_pred ccc-CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccC
Confidence 455 456899999999999999999999999999999999999999999999999986543345667899998 557788
Q ss_pred CCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhH
Q psy7411 435 EELTVEDHLQFFAKGKEFNGITYGRALLLMMSY 467 (474)
Q Consensus 435 ~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~ 467 (474)
+.+|++||+.+....++...++..+++++++..
T Consensus 108 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~ 140 (236)
T cd03267 108 WDLPVIDSFYLLAAIYDLPPARFKKRLDELSEL 140 (236)
T ss_pred CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 899999999987777776666555555555554
No 111
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.80 E-value=4.9e-19 Score=173.58 Aligned_cols=119 Identities=29% Similarity=0.429 Sum_probs=106.9
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecC--cchHHhhcceE
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIW--YEMGKVRESLG 425 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~--~~~~~ir~~IG 425 (474)
.+++++++..|++...+++++|+++++||.++++||||||||||+++|+|+++|++|+|.++|.++. ....++|+++|
T Consensus 3 ~i~~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG 82 (235)
T COG1122 3 MIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVG 82 (235)
T ss_pred eEEEEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceE
Confidence 4789999999965468999999999999999999999999999999999999999999999999986 56778899999
Q ss_pred EEcCCC--CCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhH
Q psy7411 426 LCPQYD--LLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSY 467 (474)
Q Consensus 426 ~~~Q~~--~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~ 467 (474)
+|+|++ .++. -||.|.++|.....|.+++++++++++.+..
T Consensus 83 ~VfQnpd~q~~~-~tV~~evafg~~n~g~~~~e~~~rv~~~l~~ 125 (235)
T COG1122 83 LVFQNPDDQLFG-PTVEDEVAFGLENLGLPREEIEERVAEALEL 125 (235)
T ss_pred EEEECccccccc-CcHHHHHhhchhhcCCCHHHHHHHHHHHHHH
Confidence 999986 4555 4999999999999999999988888876654
No 112
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=6.5e-19 Score=179.91 Aligned_cols=121 Identities=20% Similarity=0.326 Sum_probs=99.2
Q ss_pred cccEEEEeeEEEEcCC----ceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc------
Q psy7411 346 ASGIQLRGLTKIYKTG----KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY------ 415 (474)
Q Consensus 346 ~~~I~i~~Lsk~y~~~----~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~------ 415 (474)
...++++|+++.|++. +++++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++..
T Consensus 19 ~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~ 98 (320)
T PRK13631 19 DIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHE 98 (320)
T ss_pred CceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccc
Confidence 3468999999999532 369999999999999999999999999999999999999999999999988743
Q ss_pred -----------chHHhhcceEEEcCCC--CCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhH
Q psy7411 416 -----------EMGKVRESLGLCPQYD--LLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSY 467 (474)
Q Consensus 416 -----------~~~~ir~~IG~~~Q~~--~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~ 467 (474)
...+.|+.+|||+|++ .+++. |++||+.+.....+.+.++..++..+++..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~l~~ 162 (320)
T PRK13631 99 LITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKD-TIEKDIMFGPVALGVKKSEAKKLAKFYLNK 162 (320)
T ss_pred ccccccccccchHHHHHhcEEEEEECchhccccc-hHHHHHHhhHHhcCCCHHHHHHHHHHHHHH
Confidence 2345678899999986 56664 999999886554566666666666666554
No 113
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.80 E-value=7.3e-19 Score=173.59 Aligned_cols=119 Identities=24% Similarity=0.401 Sum_probs=97.5
Q ss_pred ccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCC-----CCeeEEEECCeecCc---chH
Q psy7411 347 SGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLII-----PTSGTAYIDGHDIWY---EMG 418 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~-----PtsG~i~i~G~dI~~---~~~ 418 (474)
..++++|+++.| +++.+++++||++++||+++|+||||||||||+++|+|+.+ |++|+|.++|+++.. ...
T Consensus 12 ~~l~~~~l~~~~-~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~ 90 (260)
T PRK10744 12 SKIQVRNLNFYY-GKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIA 90 (260)
T ss_pred ceEEEEEEEEEe-CCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchH
Confidence 358999999999 45689999999999999999999999999999999999986 589999999998852 234
Q ss_pred HhhcceEEEcCCCCCCCCCCHHHHHHHHHhcC-CCCHHHHHHHHHHHHhH
Q psy7411 419 KVRESLGLCPQYDLLFEELTVEDHLQFFAKGK-EFNGITYGRALLLMMSY 467 (474)
Q Consensus 419 ~ir~~IG~~~Q~~~L~~~LTV~E~L~~~~~lk-g~~~~~~~~~l~~~~~~ 467 (474)
..|+.++|++|++.+++ .|++||+.+..... +.+.++..+++++++..
T Consensus 91 ~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~ 139 (260)
T PRK10744 91 LLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFEKLSRAEMDERVEWALTK 139 (260)
T ss_pred HHhcceEEEecCCccCc-CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHH
Confidence 56778999999998887 79999998765443 45555555555555543
No 114
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.80 E-value=5.9e-19 Score=169.78 Aligned_cols=103 Identities=25% Similarity=0.399 Sum_probs=88.6
Q ss_pred EEEEeeEEEEcCC---ceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcc----hHHhh
Q psy7411 349 IQLRGLTKIYKTG---KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYE----MGKVR 421 (474)
Q Consensus 349 I~i~~Lsk~y~~~---~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~----~~~ir 421 (474)
++++|+++.|++. .++++++||++++||+++|+||||||||||+++|+|+.+|++|++.++|+++... ....|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 6789999999532 2799999999999999999999999999999999999999999999999988642 23556
Q ss_pred cceEEEcCCC--CCCCCCCHHHHHHHHHhcCC
Q psy7411 422 ESLGLCPQYD--LLFEELTVEDHLQFFAKGKE 451 (474)
Q Consensus 422 ~~IG~~~Q~~--~L~~~LTV~E~L~~~~~lkg 451 (474)
+.+||++|++ .+++.+|++||+.+.....+
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~ 113 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHG 113 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhcc
Confidence 7899999998 56778999999987654443
No 115
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.80 E-value=7e-19 Score=180.49 Aligned_cols=122 Identities=24% Similarity=0.280 Sum_probs=101.9
Q ss_pred ccEEEEeeEEEEcC------------CceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecC
Q psy7411 347 SGIQLRGLTKIYKT------------GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIW 414 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~------------~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~ 414 (474)
..++++||++.|+. ...+++++||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|+++.
T Consensus 7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~ 86 (331)
T PRK15079 7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLL 86 (331)
T ss_pred ceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECC
Confidence 46899999999942 257999999999999999999999999999999999999999999999999986
Q ss_pred c----chHHhhcceEEEcCCC--CCCCCCCHHHHHHHHHhcC--CCCHHHHHHHHHHHHhHh
Q psy7411 415 Y----EMGKVRESLGLCPQYD--LLFEELTVEDHLQFFAKGK--EFNGITYGRALLLMMSYV 468 (474)
Q Consensus 415 ~----~~~~ir~~IG~~~Q~~--~L~~~LTV~E~L~~~~~lk--g~~~~~~~~~l~~~~~~~ 468 (474)
. ....+|++++|++|++ .+++.+|+.||+.+....+ +.++++..+++.+++..+
T Consensus 87 ~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~v 148 (331)
T PRK15079 87 GMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKV 148 (331)
T ss_pred cCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHc
Confidence 3 2334677899999997 6888999999998765443 456666666777766653
No 116
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.80 E-value=5.9e-19 Score=170.69 Aligned_cols=103 Identities=29% Similarity=0.465 Sum_probs=89.9
Q ss_pred ccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chHHhhcceE
Q psy7411 347 SGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMGKVRESLG 425 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~~ir~~IG 425 (474)
..++++|+++.| +++++++++||++++||+++|+||||||||||+++|+|+.+|++|++.++|+++.. ...+.++.++
T Consensus 6 ~~i~~~~l~~~~-~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (225)
T PRK10247 6 PLLQLQNVGYLA-GDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVS 84 (225)
T ss_pred ceEEEeccEEee-CCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccE
Confidence 358999999999 45789999999999999999999999999999999999999999999999998753 3344567899
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHhcCC
Q psy7411 426 LCPQYDLLFEELTVEDHLQFFAKGKE 451 (474)
Q Consensus 426 ~~~Q~~~L~~~LTV~E~L~~~~~lkg 451 (474)
|++|++.+++. |+.||+.+....++
T Consensus 85 ~~~q~~~l~~~-tv~enl~~~~~~~~ 109 (225)
T PRK10247 85 YCAQTPTLFGD-TVYDNLIFPWQIRN 109 (225)
T ss_pred EEecccccccc-cHHHHHHhHHhhcC
Confidence 99999988875 99999987654443
No 117
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.80 E-value=7.4e-19 Score=169.16 Aligned_cols=119 Identities=22% Similarity=0.366 Sum_probs=98.1
Q ss_pred EEEEeeEEEEcCC---ceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcc----hHHhh
Q psy7411 349 IQLRGLTKIYKTG---KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYE----MGKVR 421 (474)
Q Consensus 349 I~i~~Lsk~y~~~---~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~----~~~ir 421 (474)
++++|+++.|+++ +.+++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++... ....+
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 6789999999532 6799999999999999999999999999999999999999999999999988531 12456
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHHhcCC-CCHHHHHHHHHHHHhH
Q psy7411 422 ESLGLCPQYDLLFEELTVEDHLQFFAKGKE-FNGITYGRALLLMMSY 467 (474)
Q Consensus 422 ~~IG~~~Q~~~L~~~LTV~E~L~~~~~lkg-~~~~~~~~~l~~~~~~ 467 (474)
+.++|++|++.+++.+|+.||+.+....++ ...++..+++.+.+..
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~ 128 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEA 128 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 789999999999998999999998765543 4455555555555543
No 118
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=8.1e-19 Score=172.18 Aligned_cols=119 Identities=21% Similarity=0.316 Sum_probs=96.9
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCC--C---CeeEEEECCeecCc---chHH
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLII--P---TSGTAYIDGHDIWY---EMGK 419 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~--P---tsG~i~i~G~dI~~---~~~~ 419 (474)
.++++|+++.|+ ++.+++++||++++||+++|+|+||||||||+++|+|+.+ | ++|++.++|+++.. ....
T Consensus 4 ~l~~~nl~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~ 82 (252)
T PRK14256 4 KVKLEQLNVHFG-KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVS 82 (252)
T ss_pred EEEEEEEEEEeC-CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHH
Confidence 478999999994 5789999999999999999999999999999999999986 4 68999999998853 2335
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHHhcCCC-CHHHHHHHHHHHHhH
Q psy7411 420 VRESLGLCPQYDLLFEELTVEDHLQFFAKGKEF-NGITYGRALLLMMSY 467 (474)
Q Consensus 420 ir~~IG~~~Q~~~L~~~LTV~E~L~~~~~lkg~-~~~~~~~~l~~~~~~ 467 (474)
.|+.++|+||+..+++.+|+.||+.+.....+. +.++..+++++++..
T Consensus 83 ~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~ 131 (252)
T PRK14256 83 IRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKR 131 (252)
T ss_pred hhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHH
Confidence 677899999999999999999999875544442 344444555555543
No 119
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=6.7e-19 Score=174.80 Aligned_cols=121 Identities=21% Similarity=0.294 Sum_probs=100.2
Q ss_pred ccEEEEeeEEEEcCC-ceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chHHhhcce
Q psy7411 347 SGIQLRGLTKIYKTG-KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMGKVRESL 424 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~~-~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~~ir~~I 424 (474)
+.++++|+++.|++. +.+++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ...++++.+
T Consensus 6 ~~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 85 (269)
T PRK13648 6 SIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI 85 (269)
T ss_pred ceEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 468999999999532 469999999999999999999999999999999999999999999999998853 344667789
Q ss_pred EEEcCCCC-CCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhH
Q psy7411 425 GLCPQYDL-LFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSY 467 (474)
Q Consensus 425 G~~~Q~~~-L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~ 467 (474)
||++|++. +++..|+.+|+.+.....+.+.++..+++++++..
T Consensus 86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 129 (269)
T PRK13648 86 GIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQ 129 (269)
T ss_pred eEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHH
Confidence 99999974 67778999999887655566655555556555543
No 120
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.80 E-value=8.8e-19 Score=173.91 Aligned_cols=119 Identities=19% Similarity=0.341 Sum_probs=96.6
Q ss_pred ccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCC-----CeeEEEECCeecCc---chH
Q psy7411 347 SGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIP-----TSGTAYIDGHDIWY---EMG 418 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~P-----tsG~i~i~G~dI~~---~~~ 418 (474)
..++++|+++.| +++.+++++||++++||+++|+||||||||||+++|+|+.+| ++|+|.++|+++.. ...
T Consensus 18 ~~l~~~nl~~~~-~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~ 96 (267)
T PRK14235 18 IKMRARDVSVFY-GEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVV 96 (267)
T ss_pred ceEEEEeEEEEE-CCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchH
Confidence 468999999999 457899999999999999999999999999999999999874 89999999998853 234
Q ss_pred HhhcceEEEcCCCCCCCCCCHHHHHHHHHhcCCC--CHHHHHHHHHHHHhH
Q psy7411 419 KVRESLGLCPQYDLLFEELTVEDHLQFFAKGKEF--NGITYGRALLLMMSY 467 (474)
Q Consensus 419 ~ir~~IG~~~Q~~~L~~~LTV~E~L~~~~~lkg~--~~~~~~~~l~~~~~~ 467 (474)
+.|+.+||++|++.+++. |+.||+.+....++. +..+..+++++++..
T Consensus 97 ~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~ 146 (267)
T PRK14235 97 ELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGLARSKAELDEIVETSLRK 146 (267)
T ss_pred HHhhceEEEecCCCCCCC-cHHHHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence 567789999999988875 999999876554443 333444445555443
No 121
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.80 E-value=7.8e-19 Score=172.52 Aligned_cols=119 Identities=23% Similarity=0.351 Sum_probs=96.8
Q ss_pred ccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCC-----CeeEEEECCeecCc---chH
Q psy7411 347 SGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIP-----TSGTAYIDGHDIWY---EMG 418 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~P-----tsG~i~i~G~dI~~---~~~ 418 (474)
..++++|+++.| +++++++++||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|+++.. ...
T Consensus 6 ~~l~~~~l~~~~-~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (254)
T PRK14273 6 AIIETENLNLFY-TDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDIL 84 (254)
T ss_pred ceEEEeeeEEEe-CCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHH
Confidence 368999999999 456899999999999999999999999999999999999987 58999999998752 234
Q ss_pred HhhcceEEEcCCCCCCCCCCHHHHHHHHHhcCCC-CHHHHHHHHHHHHhH
Q psy7411 419 KVRESLGLCPQYDLLFEELTVEDHLQFFAKGKEF-NGITYGRALLLMMSY 467 (474)
Q Consensus 419 ~ir~~IG~~~Q~~~L~~~LTV~E~L~~~~~lkg~-~~~~~~~~l~~~~~~ 467 (474)
+.|+.+||++|++.+++ +|++||+.+....++. ...+..+++++++..
T Consensus 85 ~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~ 133 (254)
T PRK14273 85 ELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHGTKDKKKLDEIVEQSLKK 133 (254)
T ss_pred HHhhceEEEeecccccc-CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 56778999999988885 8999999886554443 333445555555443
No 122
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=9.6e-19 Score=172.50 Aligned_cols=119 Identities=22% Similarity=0.361 Sum_probs=97.3
Q ss_pred ccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCC--C---CeeEEEECCeecCc---chH
Q psy7411 347 SGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLII--P---TSGTAYIDGHDIWY---EMG 418 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~--P---tsG~i~i~G~dI~~---~~~ 418 (474)
..++++|+++.| +.+++++++||++++||+++|+||||||||||+++|+|+.+ | ++|++.++|+++.. ...
T Consensus 11 ~~l~i~~l~~~~-~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 89 (259)
T PRK14274 11 EVYQINGMNLWY-GQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLV 89 (259)
T ss_pred ceEEEeeEEEEE-CCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHH
Confidence 468999999999 45689999999999999999999999999999999999987 3 69999999998852 234
Q ss_pred HhhcceEEEcCCCCCCCCCCHHHHHHHHHhcCCC-CHHHHHHHHHHHHhH
Q psy7411 419 KVRESLGLCPQYDLLFEELTVEDHLQFFAKGKEF-NGITYGRALLLMMSY 467 (474)
Q Consensus 419 ~ir~~IG~~~Q~~~L~~~LTV~E~L~~~~~lkg~-~~~~~~~~l~~~~~~ 467 (474)
+.|+.+||+||++.+++. |++||+.+....++. .+++..++++++++.
T Consensus 90 ~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~ 138 (259)
T PRK14274 90 ELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGTKNKKKLQEIVEKSLKD 138 (259)
T ss_pred HHhhceEEEecCCccccc-CHHHHHHhHHHhcCCCCHHHHHHHHHHHHHH
Confidence 567789999999988875 999999887655553 344445555555544
No 123
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=7e-19 Score=178.51 Aligned_cols=118 Identities=24% Similarity=0.410 Sum_probs=97.8
Q ss_pred EEEEeeEEEEcCC----ceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc---------
Q psy7411 349 IQLRGLTKIYKTG----KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY--------- 415 (474)
Q Consensus 349 I~i~~Lsk~y~~~----~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~--------- 415 (474)
++++|+++.|++. ..+++++||++++||+++|+||||||||||+++|+|+++|++|++.++|+++..
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccc
Confidence 7899999999532 259999999999999999999999999999999999999999999999876521
Q ss_pred ----------------chHHhhcceEEEcCCC--CCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhH
Q psy7411 416 ----------------EMGKVRESLGLCPQYD--LLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSY 467 (474)
Q Consensus 416 ----------------~~~~ir~~IG~~~Q~~--~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~ 467 (474)
...++++.+||+||++ .++ ..||+||+.+.....|.++++..+++++++..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~-~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~ 151 (305)
T PRK13651 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLF-EQTIEKDIIFGPVSMGVSKEEAKKRAAKYIEL 151 (305)
T ss_pred cccccccccccccccchHHHHHhceEEEeeCcccccc-cccHHHHHHhhHHHcCCCHHHHHHHHHHHHHH
Confidence 2345677899999985 455 46999999987766777777776666666654
No 124
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=6.7e-19 Score=176.32 Aligned_cols=121 Identities=22% Similarity=0.370 Sum_probs=101.0
Q ss_pred ccEEEEeeEEEEcC-CceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCe---eEEEECCeecCc-chHHhh
Q psy7411 347 SGIQLRGLTKIYKT-GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTS---GTAYIDGHDIWY-EMGKVR 421 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~-~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~Pts---G~i~i~G~dI~~-~~~~ir 421 (474)
..++++|+++.|++ .+.+++++||++++||+++|+||||||||||+++|+|+.+|++ |+|.++|+++.. .....+
T Consensus 4 ~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~ 83 (282)
T PRK13640 4 NIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIR 83 (282)
T ss_pred ceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHH
Confidence 35899999999953 2469999999999999999999999999999999999999998 899999999864 234556
Q ss_pred cceEEEcCCCC-CCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhH
Q psy7411 422 ESLGLCPQYDL-LFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSY 467 (474)
Q Consensus 422 ~~IG~~~Q~~~-L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~ 467 (474)
+++||++|++. +++..|+.||+.+.....+.+.++..+++.+++..
T Consensus 84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~ 130 (282)
T PRK13640 84 EKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLAD 130 (282)
T ss_pred hheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHH
Confidence 78999999974 66778999999876666677776666666666654
No 125
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=8.6e-19 Score=174.27 Aligned_cols=104 Identities=27% Similarity=0.401 Sum_probs=90.7
Q ss_pred ccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCC-----CCeeEEEECCeecCc---chH
Q psy7411 347 SGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLII-----PTSGTAYIDGHDIWY---EMG 418 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~-----PtsG~i~i~G~dI~~---~~~ 418 (474)
..++++|+++.| +++.+++++||++++||+++|+||||||||||+++|+|+.+ |++|++.++|+++.. ...
T Consensus 12 ~~l~i~nl~~~~-~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~ 90 (269)
T PRK14259 12 IIISLQNVTISY-GTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPV 90 (269)
T ss_pred ceEEEEeEEEEE-CCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHH
Confidence 468999999999 45789999999999999999999999999999999999987 699999999998742 334
Q ss_pred HhhcceEEEcCCCCCCCCCCHHHHHHHHHhcCCC
Q psy7411 419 KVRESLGLCPQYDLLFEELTVEDHLQFFAKGKEF 452 (474)
Q Consensus 419 ~ir~~IG~~~Q~~~L~~~LTV~E~L~~~~~lkg~ 452 (474)
+.|+.++|+||++.+++. |++||+.+.....+.
T Consensus 91 ~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~ 123 (269)
T PRK14259 91 EVRRRIGMVFQQPNPFPK-SIYENIAFGARINGY 123 (269)
T ss_pred HHhhceEEEccCCccchh-hHHHHHhhhhhhcCC
Confidence 567789999999988884 999999987655554
No 126
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=7.1e-19 Score=174.80 Aligned_cols=118 Identities=21% Similarity=0.287 Sum_probs=95.5
Q ss_pred EEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc---chHHhhcceE
Q psy7411 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY---EMGKVRESLG 425 (474)
Q Consensus 349 I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~---~~~~ir~~IG 425 (474)
++++|+++.|+ ++.+++++||++.+||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. .....|+.+|
T Consensus 2 l~~~~l~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~ 80 (271)
T PRK13638 2 LATSDLWFRYQ-DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVA 80 (271)
T ss_pred eEEEEEEEEcC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheE
Confidence 68999999994 5679999999999999999999999999999999999999999999999999842 2335567899
Q ss_pred EEcCCCCC-CCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhH
Q psy7411 426 LCPQYDLL-FEELTVEDHLQFFAKGKEFNGITYGRALLLMMSY 467 (474)
Q Consensus 426 ~~~Q~~~L-~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~ 467 (474)
|++|++.+ +...++.||+.+.....+.+.++..+++++.+..
T Consensus 81 ~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 123 (271)
T PRK13638 81 TVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTL 123 (271)
T ss_pred EEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 99998652 3445899999886655665555555555554443
No 127
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.79 E-value=8.1e-19 Score=172.72 Aligned_cols=98 Identities=29% Similarity=0.364 Sum_probs=87.7
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chHHhhcceEE
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMGKVRESLGL 426 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~~ir~~IG~ 426 (474)
+++++|+++.| +++.+++++||++++||+++|+||||||||||+++|+|+.+|++|++.++|+++.. ...+.++.++|
T Consensus 1 ~l~~~~l~~~~-~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (256)
T TIGR03873 1 GLRLSRVSWSA-GGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVAL 79 (256)
T ss_pred CceEEeEEEEE-CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEE
Confidence 36899999999 55789999999999999999999999999999999999999999999999998864 23445667999
Q ss_pred EcCCCCCCCCCCHHHHHHHH
Q psy7411 427 CPQYDLLFEELTVEDHLQFF 446 (474)
Q Consensus 427 ~~Q~~~L~~~LTV~E~L~~~ 446 (474)
++|++.+++.+|+.||+.+.
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~ 99 (256)
T TIGR03873 80 VEQDSDTAVPLTVRDVVALG 99 (256)
T ss_pred ecccCccCCCCCHHHHHHhc
Confidence 99998878889999999875
No 128
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.79 E-value=3.3e-19 Score=189.67 Aligned_cols=121 Identities=27% Similarity=0.423 Sum_probs=103.3
Q ss_pred ccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecC-cchHH-hhcce
Q psy7411 347 SGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIW-YEMGK-VRESL 424 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~-~~~~~-ir~~I 424 (474)
+.++++|++|+| +..+||+++||++++||+++|+|.||||||||+|+|+|.++|++|+|.++|+.+. ....+ .+..|
T Consensus 7 ~ll~~~~i~K~F-ggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI 85 (500)
T COG1129 7 PLLELRGISKSF-GGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGI 85 (500)
T ss_pred ceeeeecceEEc-CCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCc
Confidence 457899999999 5789999999999999999999999999999999999999999999999999986 33333 44569
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHhcCC----CCHHHHHHHHHHHHhHh
Q psy7411 425 GLCPQYDLLFEELTVEDHLQFFAKGKE----FNGITYGRALLLMMSYV 468 (474)
Q Consensus 425 G~~~Q~~~L~~~LTV~E~L~~~~~lkg----~~~~~~~~~l~~~~~~~ 468 (474)
+.++|+..|.|+|||.||+.+.....+ +..++..++-...+.++
T Consensus 86 ~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~l 133 (500)
T COG1129 86 ATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARL 133 (500)
T ss_pred EEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHc
Confidence 999999999999999999988655432 46677777666666654
No 129
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=9.7e-19 Score=174.43 Aligned_cols=118 Identities=29% Similarity=0.450 Sum_probs=94.6
Q ss_pred EEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc---chHHhhcceE
Q psy7411 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY---EMGKVRESLG 425 (474)
Q Consensus 349 I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~---~~~~ir~~IG 425 (474)
++++|+++.|++.+.+++++||++.+||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ....+++.+|
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 81 (275)
T PRK13639 2 LETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVG 81 (275)
T ss_pred EEEEEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheE
Confidence 6799999999534579999999999999999999999999999999999999999999999999842 2234577899
Q ss_pred EEcCCC--CCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhH
Q psy7411 426 LCPQYD--LLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSY 467 (474)
Q Consensus 426 ~~~Q~~--~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~ 467 (474)
|++|++ .++ ..|+.||+.+.....+...++..+++.+.+..
T Consensus 82 ~v~q~~~~~~~-~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~ 124 (275)
T PRK13639 82 IVFQNPDDQLF-APTVEEDVAFGPLNLGLSKEEVEKRVKEALKA 124 (275)
T ss_pred EEeeChhhhhc-cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 999996 344 46999999875433455555554555555543
No 130
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=1e-18 Score=171.36 Aligned_cols=119 Identities=22% Similarity=0.398 Sum_probs=96.4
Q ss_pred ccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCC-----CeeEEEECCeecCc---chH
Q psy7411 347 SGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIP-----TSGTAYIDGHDIWY---EMG 418 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~P-----tsG~i~i~G~dI~~---~~~ 418 (474)
..++++|+++.| +++.+++++||++++||+++|+|+||||||||+++|+|+.+| ++|+|.++|+++.. ...
T Consensus 3 ~~l~~~~l~~~~-~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (251)
T PRK14270 3 IKMESKNLNLWY-GEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVV 81 (251)
T ss_pred cEEEEEEeEEEE-CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHH
Confidence 357899999999 457899999999999999999999999999999999999875 79999999999853 223
Q ss_pred HhhcceEEEcCCCCCCCCCCHHHHHHHHHhcCCC-CHHHHHHHHHHHHhH
Q psy7411 419 KVRESLGLCPQYDLLFEELTVEDHLQFFAKGKEF-NGITYGRALLLMMSY 467 (474)
Q Consensus 419 ~ir~~IG~~~Q~~~L~~~LTV~E~L~~~~~lkg~-~~~~~~~~l~~~~~~ 467 (474)
..++.+||+||++.+++ +|++||+.+....++. ..++..+++++++..
T Consensus 82 ~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~ 130 (251)
T PRK14270 82 ELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGIKDKKELDKIVEWALKK 130 (251)
T ss_pred HHHhheEEEecCCCcCC-CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHH
Confidence 45778999999999887 8999999987655554 333444444444443
No 131
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=9.6e-19 Score=171.26 Aligned_cols=117 Identities=21% Similarity=0.313 Sum_probs=95.1
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCC---CCeeEEEECCeecCc-chHHhhcc
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLII---PTSGTAYIDGHDIWY-EMGKVRES 423 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~---PtsG~i~i~G~dI~~-~~~~ir~~ 423 (474)
.++++|+++.|+ ++.+++++||++++||+++|+||||||||||+++|+|+.+ |++|+|.++|+++.. .....|+.
T Consensus 2 ~~~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 80 (246)
T PRK14269 2 IAKTTNLNLFYG-KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKN 80 (246)
T ss_pred ceeeeeeEEEEC-CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhh
Confidence 368999999994 5789999999999999999999999999999999999974 799999999999864 23456778
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHHHhcCCC--CHHHHHHHHHHHHh
Q psy7411 424 LGLCPQYDLLFEELTVEDHLQFFAKGKEF--NGITYGRALLLMMS 466 (474)
Q Consensus 424 IG~~~Q~~~L~~~LTV~E~L~~~~~lkg~--~~~~~~~~l~~~~~ 466 (474)
+||+||++.+++ .|++||+.+....++. +.++..+++.++++
T Consensus 81 i~~~~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~ 124 (246)
T PRK14269 81 VGMVFQQPNVFV-KSIYENISYAPKLHGMIKNKDEEEALVVDCLQ 124 (246)
T ss_pred EEEEecCCcccc-ccHHHHhhhHHhhcCcccChHHHHHHHHHHHH
Confidence 999999999987 6999999887655543 22333344444444
No 132
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=4e-19 Score=176.65 Aligned_cols=117 Identities=25% Similarity=0.310 Sum_probs=96.4
Q ss_pred EEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcc-h---HHh-hcce
Q psy7411 350 QLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYE-M---GKV-RESL 424 (474)
Q Consensus 350 ~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~-~---~~i-r~~I 424 (474)
.+++++|.| +.+.+++++||++++||+++|+||||||||||+++|+|+.+|++|++.++|+++... . .+. ++.+
T Consensus 26 ~~~~~~~~~-~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i 104 (269)
T cd03294 26 SKEEILKKT-GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKI 104 (269)
T ss_pred hhhhhhhhc-CCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcE
Confidence 467999999 567899999999999999999999999999999999999999999999999987532 1 112 3579
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhH
Q psy7411 425 GLCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSY 467 (474)
Q Consensus 425 G~~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~ 467 (474)
||+||++.+++.+|+.||+.+.....+.+..+..+++++++..
T Consensus 105 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~ 147 (269)
T cd03294 105 SMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALEL 147 (269)
T ss_pred EEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999987666555555444555555543
No 133
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.79 E-value=1.1e-18 Score=170.81 Aligned_cols=118 Identities=23% Similarity=0.401 Sum_probs=95.9
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCC-----CeeEEEECCeecCc---chHH
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIP-----TSGTAYIDGHDIWY---EMGK 419 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~P-----tsG~i~i~G~dI~~---~~~~ 419 (474)
.++++|+++.|+ ++++++++||++++||+++|+||||||||||+++|+|+.+| ++|+|.++|+++.. ....
T Consensus 3 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 81 (250)
T PRK14240 3 KISVKDLDLFYG-DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQ 81 (250)
T ss_pred eEEEEEEEEEEC-CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHH
Confidence 478999999994 56899999999999999999999999999999999998763 79999999998853 2335
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHHhcCCC-CHHHHHHHHHHHHhH
Q psy7411 420 VRESLGLCPQYDLLFEELTVEDHLQFFAKGKEF-NGITYGRALLLMMSY 467 (474)
Q Consensus 420 ir~~IG~~~Q~~~L~~~LTV~E~L~~~~~lkg~-~~~~~~~~l~~~~~~ 467 (474)
.|+.++|++|++.+++ +|+.||+.+....++. +.++..+++++.+..
T Consensus 82 ~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~ 129 (250)
T PRK14240 82 LRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKG 129 (250)
T ss_pred HhccEEEEecCCccCc-ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 6778999999988887 8999999987655554 333445555554443
No 134
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.79 E-value=9.5e-19 Score=168.57 Aligned_cols=109 Identities=31% Similarity=0.476 Sum_probs=92.2
Q ss_pred EEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEEEc
Q psy7411 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCP 428 (474)
Q Consensus 349 I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~~ 428 (474)
++++|+++.| +++.+++++||++++||+++|+||||||||||+++|+|+.+|++|++.++|+++... . ++.++|+|
T Consensus 1 l~l~~v~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~--~-~~~~~~~~ 76 (223)
T TIGR03740 1 LETKNLSKRF-GKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRK--D-LHKIGSLI 76 (223)
T ss_pred CEEEeEEEEE-CCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccc--c-cccEEEEc
Confidence 4689999999 457899999999999999999999999999999999999999999999999987431 1 24699999
Q ss_pred CCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHH
Q psy7411 429 QYDLLFEELTVEDHLQFFAKGKEFNGITYGRAL 461 (474)
Q Consensus 429 Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l 461 (474)
|++.+++.+|++||+.+....++.+.+++.+.+
T Consensus 77 q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l 109 (223)
T TIGR03740 77 ESPPLYENLTARENLKVHTTLLGLPDSRIDEVL 109 (223)
T ss_pred CCCCccccCCHHHHHHHHHHHcCCCHHHHHHHH
Confidence 999999999999999887665555444444433
No 135
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.79 E-value=1.1e-18 Score=170.04 Aligned_cols=115 Identities=25% Similarity=0.407 Sum_probs=95.4
Q ss_pred EEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEEEc
Q psy7411 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCP 428 (474)
Q Consensus 349 I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~~ 428 (474)
++++++++.| +++.+++++||++.+||+++|+||||||||||+++|+|+.+|++|++.++|.++... ...++.++|+|
T Consensus 1 i~i~~l~~~~-~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~-~~~~~~i~~~~ 78 (237)
T TIGR00968 1 IEIANISKRF-GSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRV-HARDRKIGFVF 78 (237)
T ss_pred CEEEEEEEEE-CCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcC-ChhhcCEEEEe
Confidence 3689999999 457899999999999999999999999999999999999999999999999988532 23466799999
Q ss_pred CCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy7411 429 QYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLLMM 465 (474)
Q Consensus 429 Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~ 465 (474)
|++.+++.+|+.||+.+....++...++..+.+++.+
T Consensus 79 q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l 115 (237)
T TIGR00968 79 QHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELL 115 (237)
T ss_pred cChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHH
Confidence 9999999999999998766655554443334444433
No 136
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.79 E-value=1.2e-18 Score=167.38 Aligned_cols=103 Identities=20% Similarity=0.250 Sum_probs=91.2
Q ss_pred ccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEE
Q psy7411 347 SGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGL 426 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~ 426 (474)
..++++|+++.| +++.+++++||++++||+++|+|+||||||||+++|+|+.+|++|++.++|+++... ..++.++|
T Consensus 10 ~~l~~~~l~~~~-~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~--~~~~~i~~ 86 (214)
T PRK13543 10 PLLAAHALAFSR-NEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG--DRSRFMAY 86 (214)
T ss_pred ceEEEeeEEEec-CCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch--hhhhceEE
Confidence 468999999999 456899999999999999999999999999999999999999999999999988532 33557999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHhcCCC
Q psy7411 427 CPQYDLLFEELTVEDHLQFFAKGKEF 452 (474)
Q Consensus 427 ~~Q~~~L~~~LTV~E~L~~~~~lkg~ 452 (474)
++|++.+++.+|+.||+.+....++.
T Consensus 87 ~~q~~~~~~~~t~~e~l~~~~~~~~~ 112 (214)
T PRK13543 87 LGHLPGLKADLSTLENLHFLCGLHGR 112 (214)
T ss_pred eecCcccccCCcHHHHHHHHHHhcCC
Confidence 99999899989999999887665553
No 137
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=1.4e-18 Score=168.87 Aligned_cols=99 Identities=30% Similarity=0.447 Sum_probs=88.4
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcc-h-HHhhcceE
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYE-M-GKVRESLG 425 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~-~-~~ir~~IG 425 (474)
.++++|+++.| +++.+++++||++++||+++|+||||||||||+++|+|+.+|++|++.++|+++... . ...++.++
T Consensus 5 ~l~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 83 (237)
T PRK11614 5 MLSFDKVSAHY-GKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVA 83 (237)
T ss_pred EEEEEeEEEee-CCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEE
Confidence 58899999999 457899999999999999999999999999999999999999999999999987542 2 23467799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHH
Q psy7411 426 LCPQYDLLFEELTVEDHLQFFA 447 (474)
Q Consensus 426 ~~~Q~~~L~~~LTV~E~L~~~~ 447 (474)
|++|++.+++.+|+.||+.+..
T Consensus 84 ~~~q~~~~~~~~tv~~~l~~~~ 105 (237)
T PRK11614 84 IVPEGRRVFSRMTVEENLAMGG 105 (237)
T ss_pred EeccCcccCCCCcHHHHHHHhh
Confidence 9999999999999999998753
No 138
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=1.3e-18 Score=169.40 Aligned_cols=116 Identities=25% Similarity=0.428 Sum_probs=96.3
Q ss_pred EEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEEEc
Q psy7411 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCP 428 (474)
Q Consensus 349 I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~~ 428 (474)
++++|+++.|+ .+ +++++||++++||+++|+|+||||||||+++|+|+.+|++|++.++|.++.... ..++.+++++
T Consensus 1 l~~~~l~~~~~-~~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~-~~~~~i~~~~ 77 (235)
T cd03299 1 LKVENLSKDWK-EF-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLP-PEKRDISYVP 77 (235)
T ss_pred CeeEeEEEEeC-Cc-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCC-hhHcCEEEEe
Confidence 46899999994 33 899999999999999999999999999999999999999999999999886422 2356799999
Q ss_pred CCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhH
Q psy7411 429 QYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSY 467 (474)
Q Consensus 429 Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~ 467 (474)
|++.+++.+|+.||+.+.....+.+..+..+++.+++..
T Consensus 78 q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~ 116 (235)
T cd03299 78 QNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEM 116 (235)
T ss_pred ecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 999999999999999876555555555555555555543
No 139
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.79 E-value=4.4e-19 Score=169.54 Aligned_cols=92 Identities=28% Similarity=0.471 Sum_probs=81.5
Q ss_pred EEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEEEcCC
Q psy7411 351 LRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQY 430 (474)
Q Consensus 351 i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~~Q~ 430 (474)
++|+++.| +++.+++++||++++||+++|+||||||||||+++|+|+.+|++|++.++|+++. ..++.++|++|+
T Consensus 2 ~~~l~~~~-~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~----~~~~~i~~v~q~ 76 (213)
T cd03235 2 VEDLTVSY-GGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE----KERKRIGYVPQR 76 (213)
T ss_pred cccceeEE-CCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH----HHHhheEEeccc
Confidence 67899999 4568999999999999999999999999999999999999999999999998763 356779999999
Q ss_pred CCCC--CCCCHHHHHHHHH
Q psy7411 431 DLLF--EELTVEDHLQFFA 447 (474)
Q Consensus 431 ~~L~--~~LTV~E~L~~~~ 447 (474)
+.+. ..+|++||+.+..
T Consensus 77 ~~~~~~~~~tv~e~l~~~~ 95 (213)
T cd03235 77 RSIDRDFPISVRDVVLMGL 95 (213)
T ss_pred cccccCCCCcHHHHHHhcc
Confidence 8763 3379999998754
No 140
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.79 E-value=1.1e-18 Score=174.35 Aligned_cols=119 Identities=24% Similarity=0.388 Sum_probs=99.0
Q ss_pred cEEEEeeEEEEcC-----CceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc--chHHh
Q psy7411 348 GIQLRGLTKIYKT-----GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY--EMGKV 420 (474)
Q Consensus 348 ~I~i~~Lsk~y~~-----~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~--~~~~i 420 (474)
.++++|+++.|++ .+.+++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++.. ...+.
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 5889999999952 2569999999999999999999999999999999999999999999999998853 23456
Q ss_pred hcceEEEcCCCC--CCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhH
Q psy7411 421 RESLGLCPQYDL--LFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSY 467 (474)
Q Consensus 421 r~~IG~~~Q~~~--L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~ 467 (474)
++.+||+||++. ++ ..|+.||+.+.....+.+.++..+++++++..
T Consensus 84 ~~~i~~v~q~~~~~~~-~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 131 (280)
T PRK13633 84 RNKAGMVFQNPDNQIV-ATIVEEDVAFGPENLGIPPEEIRERVDESLKK 131 (280)
T ss_pred hhheEEEecChhhhhc-cccHHHHHHhhHhhcCCCHHHHHHHHHHHHHH
Confidence 778999999863 44 46999999987666666666666666666554
No 141
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.79 E-value=4.5e-19 Score=191.40 Aligned_cols=113 Identities=28% Similarity=0.408 Sum_probs=99.1
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEEE
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLC 427 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~ 427 (474)
.++++|++++|++++++|+|+||++++||.++++||||||||||+++|+|+++|++|+|.++|.++..-.+++|++++||
T Consensus 334 ~I~~~~vsf~Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V 413 (529)
T TIGR02868 334 TLELRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVF 413 (529)
T ss_pred eEEEEEEEEecCCCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEE
Confidence 58999999999655679999999999999999999999999999999999999999999999999975566788999999
Q ss_pred cCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy7411 428 PQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLL 463 (474)
Q Consensus 428 ~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~ 463 (474)
||++.+|++ |++||+.+.. ...+++++.++++.
T Consensus 414 ~Q~~~lF~~-TI~eNI~~g~--~~~~~e~i~~al~~ 446 (529)
T TIGR02868 414 AQDAHLFDT-TVRDNLRLGR--PDATDEELWAALER 446 (529)
T ss_pred ccCcccccc-cHHHHHhccC--CCCCHHHHHHHHHH
Confidence 999999987 9999999853 23456666666553
No 142
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.79 E-value=7.9e-19 Score=171.50 Aligned_cols=101 Identities=31% Similarity=0.477 Sum_probs=88.4
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chHHhhcceEE
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMGKVRESLGL 426 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~~ir~~IG~ 426 (474)
.++++|+++.| +++.+++++||++.+||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ...+.|+.++|
T Consensus 3 ~l~~~~l~~~~-~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~ 81 (241)
T PRK14250 3 EIEFKEVSYSS-FGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGM 81 (241)
T ss_pred eEEEEeEEEEe-CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEE
Confidence 37899999999 45689999999999999999999999999999999999999999999999998853 23455678999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHhcC
Q psy7411 427 CPQYDLLFEELTVEDHLQFFAKGK 450 (474)
Q Consensus 427 ~~Q~~~L~~~LTV~E~L~~~~~lk 450 (474)
++|++.+++ .|++||+.+....+
T Consensus 82 ~~q~~~~~~-~tv~e~l~~~~~~~ 104 (241)
T PRK14250 82 VFQQPHLFE-GTVKDNIEYGPMLK 104 (241)
T ss_pred EecCchhch-hhHHHHHhcchhhc
Confidence 999998887 69999998754433
No 143
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=9e-19 Score=167.16 Aligned_cols=95 Identities=27% Similarity=0.434 Sum_probs=83.0
Q ss_pred EEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEEEc
Q psy7411 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCP 428 (474)
Q Consensus 349 I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~~ 428 (474)
++++|+++.|+ ++. .++||++++||+++|+||||||||||+++|+|+.+|++|++.++|+++... ...++.+||++
T Consensus 1 i~~~~l~~~~~-~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~-~~~~~~i~~~~ 76 (211)
T cd03298 1 VRLDKIRFSYG-EQP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAA-PPADRPVSMLF 76 (211)
T ss_pred CEEEeEEEEeC-CEe--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcC-CHhHccEEEEe
Confidence 46899999994 443 399999999999999999999999999999999999999999999988532 22356799999
Q ss_pred CCCCCCCCCCHHHHHHHHH
Q psy7411 429 QYDLLFEELTVEDHLQFFA 447 (474)
Q Consensus 429 Q~~~L~~~LTV~E~L~~~~ 447 (474)
|++.+++.+|++||+.+..
T Consensus 77 q~~~~~~~~tv~enl~~~~ 95 (211)
T cd03298 77 QENNLFAHLTVEQNVGLGL 95 (211)
T ss_pred cccccCCCCcHHHHHhccc
Confidence 9999999999999998753
No 144
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.79 E-value=1.5e-18 Score=172.02 Aligned_cols=120 Identities=23% Similarity=0.324 Sum_probs=96.0
Q ss_pred cEEEEeeEEEEcC--------CceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcc---
Q psy7411 348 GIQLRGLTKIYKT--------GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYE--- 416 (474)
Q Consensus 348 ~I~i~~Lsk~y~~--------~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~--- 416 (474)
.++++|+++.|++ ++.+++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++...
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 4789999999942 36799999999999999999999999999999999999999999999999988532
Q ss_pred -hHHhhcceEEEcCCC--CCCCCCCHHHHHHHHHh-cCCCCHHHHHHHHHHHHhH
Q psy7411 417 -MGKVRESLGLCPQYD--LLFEELTVEDHLQFFAK-GKEFNGITYGRALLLMMSY 467 (474)
Q Consensus 417 -~~~ir~~IG~~~Q~~--~L~~~LTV~E~L~~~~~-lkg~~~~~~~~~l~~~~~~ 467 (474)
....++.+||++|++ .+++.+|++||+.+... ..+...++..+++.+++..
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 136 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDM 136 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 123567799999986 46778999999976543 2344444444555666554
No 145
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.79 E-value=1.2e-18 Score=167.71 Aligned_cols=119 Identities=18% Similarity=0.270 Sum_probs=94.0
Q ss_pred EEEEeeEEEEcC------CceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEEC--Ce--ecCc-ch
Q psy7411 349 IQLRGLTKIYKT------GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYID--GH--DIWY-EM 417 (474)
Q Consensus 349 I~i~~Lsk~y~~------~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~--G~--dI~~-~~ 417 (474)
++++|+++.|++ ++.+++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++ |+ ++.. ..
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 688999999942 2479999999999999999999999999999999999999999999998 43 4321 11
Q ss_pred H---Hh-hcceEEEcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhH
Q psy7411 418 G---KV-RESLGLCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSY 467 (474)
Q Consensus 418 ~---~i-r~~IG~~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~ 467 (474)
. +. ++.+||++|++.+++.+|++|++.+.....+...++..+++.++++.
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~ 135 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLAR 135 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 1 22 35699999999999999999999875544455544445555555544
No 146
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.79 E-value=1.2e-18 Score=169.41 Aligned_cols=118 Identities=21% Similarity=0.304 Sum_probs=93.7
Q ss_pred EEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCC--CCCeeEEEECCeecCcc-hHH-hhcce
Q psy7411 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLI--IPTSGTAYIDGHDIWYE-MGK-VRESL 424 (474)
Q Consensus 349 I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~--~PtsG~i~i~G~dI~~~-~~~-ir~~I 424 (474)
++++|+++.| +++.+++++||++++||+++|+||||||||||+++|+|+. +|++|+|.++|+++... ... .+..+
T Consensus 1 l~~~~l~~~~-~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 79 (243)
T TIGR01978 1 LKIKDLHVSV-EDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGL 79 (243)
T ss_pred CeEeeEEEEE-CCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccce
Confidence 4689999999 4578999999999999999999999999999999999995 79999999999987542 222 24458
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHhcCC-------CCHHHHHHHHHHHHhH
Q psy7411 425 GLCPQYDLLFEELTVEDHLQFFAKGKE-------FNGITYGRALLLMMSY 467 (474)
Q Consensus 425 G~~~Q~~~L~~~LTV~E~L~~~~~lkg-------~~~~~~~~~l~~~~~~ 467 (474)
+|++|++.+++.+|++|++.+...... .+..+..+++++++..
T Consensus 80 ~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 129 (243)
T TIGR01978 80 FLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLAL 129 (243)
T ss_pred EeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHH
Confidence 999999999999999999987543211 1233344555555554
No 147
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.78 E-value=1.5e-18 Score=172.27 Aligned_cols=120 Identities=24% Similarity=0.389 Sum_probs=96.1
Q ss_pred cEEEEeeEEEEcC--------CceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chH
Q psy7411 348 GIQLRGLTKIYKT--------GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMG 418 (474)
Q Consensus 348 ~I~i~~Lsk~y~~--------~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~ 418 (474)
.++++|++|.|++ .+++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 5899999999942 2469999999999999999999999999999999999999999999999998863 223
Q ss_pred HhhcceEEEcCCCC--CCCCCCHHHHHHHHHhcC-CCCHHHHHHHHHHHHhH
Q psy7411 419 KVRESLGLCPQYDL--LFEELTVEDHLQFFAKGK-EFNGITYGRALLLMMSY 467 (474)
Q Consensus 419 ~ir~~IG~~~Q~~~--L~~~LTV~E~L~~~~~lk-g~~~~~~~~~l~~~~~~ 467 (474)
..++.++|+||++. +++.+|+.+++.+..+.. +...++..+++++++..
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 135 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQ 135 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 34567999999864 677889999998765543 34444444555555543
No 148
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=1.5e-18 Score=168.48 Aligned_cols=113 Identities=29% Similarity=0.434 Sum_probs=94.7
Q ss_pred EEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEEEc
Q psy7411 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCP 428 (474)
Q Consensus 349 I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~~ 428 (474)
++++++++.| +++.+++++||++.+||+++|+|+||||||||+++|+|+.+|++|++.++|+++.... ..++.+||++
T Consensus 1 l~~~~l~~~~-~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~-~~~~~i~~~~ 78 (232)
T cd03300 1 IELENVSKFY-GGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLP-PHKRPVNTVF 78 (232)
T ss_pred CEEEeEEEEe-CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCC-hhhcceEEEe
Confidence 3689999999 4578999999999999999999999999999999999999999999999999886422 2356799999
Q ss_pred CCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy7411 429 QYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLL 463 (474)
Q Consensus 429 Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~ 463 (474)
|++.+++.+|+.||+.+....++.+.....++++.
T Consensus 79 q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~ 113 (232)
T cd03300 79 QNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAE 113 (232)
T ss_pred cccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 99999999999999987666565554444444433
No 149
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=1.7e-18 Score=171.50 Aligned_cols=99 Identities=25% Similarity=0.346 Sum_probs=88.9
Q ss_pred ccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chHHhhcceE
Q psy7411 347 SGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMGKVRESLG 425 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~~ir~~IG 425 (474)
..++++|+++.| +++.+++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ...+.++.++
T Consensus 10 ~~l~i~~l~~~~-~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 88 (265)
T PRK10575 10 TTFALRNVSFRV-PGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVA 88 (265)
T ss_pred ceEEEeeEEEEE-CCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheE
Confidence 458999999999 45789999999999999999999999999999999999999999999999998753 3345567899
Q ss_pred EEcCCCCCCCCCCHHHHHHHH
Q psy7411 426 LCPQYDLLFEELTVEDHLQFF 446 (474)
Q Consensus 426 ~~~Q~~~L~~~LTV~E~L~~~ 446 (474)
|++|+..+++.+|+.||+.+.
T Consensus 89 ~v~q~~~~~~~~tv~e~l~~~ 109 (265)
T PRK10575 89 YLPQQLPAAEGMTVRELVAIG 109 (265)
T ss_pred EeccCCCCCCCccHHHHHHhC
Confidence 999998888889999999874
No 150
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=9.5e-19 Score=166.85 Aligned_cols=101 Identities=18% Similarity=0.215 Sum_probs=89.9
Q ss_pred cEEEEeeEEEEcC---CceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCC---CCeeEEEECCeecCcchHHhh
Q psy7411 348 GIQLRGLTKIYKT---GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLII---PTSGTAYIDGHDIWYEMGKVR 421 (474)
Q Consensus 348 ~I~i~~Lsk~y~~---~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~---PtsG~i~i~G~dI~~~~~~ir 421 (474)
.+.++|+++.|++ ++.+++++||++++||+++|+||||||||||+++|+|+.+ |++|++.++|+++.......+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~ 82 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYP 82 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhc
Confidence 3689999999962 4679999999999999999999999999999999999999 899999999998865434567
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHHh
Q psy7411 422 ESLGLCPQYDLLFEELTVEDHLQFFAK 448 (474)
Q Consensus 422 ~~IG~~~Q~~~L~~~LTV~E~L~~~~~ 448 (474)
+.++|++|++.+++.+||+||+.+...
T Consensus 83 ~~i~~~~q~~~~~~~~tv~~~l~~~~~ 109 (202)
T cd03233 83 GEIIYVSEEDVHFPTLTVRETLDFALR 109 (202)
T ss_pred ceEEEEecccccCCCCcHHHHHhhhhh
Confidence 789999999999999999999988654
No 151
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.78 E-value=1.6e-18 Score=181.03 Aligned_cols=114 Identities=21% Similarity=0.266 Sum_probs=93.1
Q ss_pred eeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCe----ecCc----chHHhh-cc
Q psy7411 353 GLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGH----DIWY----EMGKVR-ES 423 (474)
Q Consensus 353 ~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~----dI~~----~~~~ir-~~ 423 (474)
++.|.| +...+++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|+ ++.. ...+.| ++
T Consensus 29 ~~~~~~-g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~ 107 (382)
T TIGR03415 29 EILDET-GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHR 107 (382)
T ss_pred HHHHhh-CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCC
Confidence 344555 4578999999999999999999999999999999999999999999999997 3432 122333 57
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhH
Q psy7411 424 LGLCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSY 467 (474)
Q Consensus 424 IG~~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~ 467 (474)
+||++|++.+++.+|+.||+.+.....|.+..+..++.++++..
T Consensus 108 i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~ 151 (382)
T TIGR03415 108 VSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLEL 151 (382)
T ss_pred EEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999988777777666655555655554
No 152
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=1.5e-18 Score=173.25 Aligned_cols=121 Identities=21% Similarity=0.304 Sum_probs=100.5
Q ss_pred cEEEEeeEEEEcC--CceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chHHhhcce
Q psy7411 348 GIQLRGLTKIYKT--GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMGKVRESL 424 (474)
Q Consensus 348 ~I~i~~Lsk~y~~--~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~~ir~~I 424 (474)
.++++|+++.|++ .+.+++++||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|+++.. ...+.++.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 4789999999953 2359999999999999999999999999999999999999999999999999863 334567789
Q ss_pred EEEcCCCC-CCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhHh
Q psy7411 425 GLCPQYDL-LFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSYV 468 (474)
Q Consensus 425 G~~~Q~~~-L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~~ 468 (474)
||++|++. ++...|+.||+.+.....+.+.++..+++++++..+
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~ 128 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAV 128 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHC
Confidence 99999974 566789999998765555566666666666666654
No 153
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=2.8e-18 Score=172.24 Aligned_cols=118 Identities=21% Similarity=0.388 Sum_probs=96.2
Q ss_pred cccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCC-----CCeeEEEECCeecCc---ch
Q psy7411 346 ASGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLII-----PTSGTAYIDGHDIWY---EM 417 (474)
Q Consensus 346 ~~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~-----PtsG~i~i~G~dI~~---~~ 417 (474)
.+.++++|+++.| +++.+++++||++.+||+++|+||||||||||+++|+|+.+ |++|+|.++|+++.. ..
T Consensus 37 ~~~l~i~~l~~~~-~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~ 115 (285)
T PRK14254 37 ETVIEARDLNVFY-GDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDP 115 (285)
T ss_pred CceEEEEEEEEEE-CCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccch
Confidence 3468999999999 45789999999999999999999999999999999999987 689999999998753 23
Q ss_pred HHhhcceEEEcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q psy7411 418 GKVRESLGLCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMS 466 (474)
Q Consensus 418 ~~ir~~IG~~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~ 466 (474)
...++.++|++|++.+++. |+.||+.+....++.+. +..+++++++.
T Consensus 116 ~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~-~~~~~~~~~l~ 162 (285)
T PRK14254 116 VALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQGYDG-DIDERVEESLR 162 (285)
T ss_pred HhhhccEEEEecCCccCcC-CHHHHHHHHHHHcCCcH-HHHHHHHHHHH
Confidence 3557789999999888885 99999988765555433 33344444443
No 154
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=1.7e-18 Score=170.32 Aligned_cols=98 Identities=31% Similarity=0.481 Sum_probs=87.8
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chHHhhcceEE
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMGKVRESLGL 426 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~~ir~~IG~ 426 (474)
.++++|+++.| +++.+++++||++++||+++|+|+||||||||+++|+|+.+|++|++.++|+++.. ...+.++.+||
T Consensus 2 ~l~~~~l~~~~-~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (255)
T PRK11231 2 TLRTENLTVGY-GTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLAL 80 (255)
T ss_pred EEEEEeEEEEE-CCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEE
Confidence 37899999999 45789999999999999999999999999999999999999999999999998753 23455667999
Q ss_pred EcCCCCCCCCCCHHHHHHHH
Q psy7411 427 CPQYDLLFEELTVEDHLQFF 446 (474)
Q Consensus 427 ~~Q~~~L~~~LTV~E~L~~~ 446 (474)
+||+..+++.+|+.||+.+.
T Consensus 81 ~~q~~~~~~~~tv~~~i~~~ 100 (255)
T PRK11231 81 LPQHHLTPEGITVRELVAYG 100 (255)
T ss_pred ecccCCCCCCccHHHHHHhc
Confidence 99999888889999999874
No 155
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=1.5e-18 Score=162.05 Aligned_cols=96 Identities=32% Similarity=0.554 Sum_probs=86.2
Q ss_pred EEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcc---hHHhhcceE
Q psy7411 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYE---MGKVRESLG 425 (474)
Q Consensus 349 I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~---~~~ir~~IG 425 (474)
++++|+++.| +++++++++||++++||+++|+||||||||||+++|+|+++|++|++.++|+++... ....++.++
T Consensus 1 i~~~~l~~~~-~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 79 (178)
T cd03229 1 LELKNVSKRY-GQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIG 79 (178)
T ss_pred CEEEEEEEEE-CCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEE
Confidence 4689999999 457899999999999999999999999999999999999999999999999987542 345677899
Q ss_pred EEcCCCCCCCCCCHHHHHHH
Q psy7411 426 LCPQYDLLFEELTVEDHLQF 445 (474)
Q Consensus 426 ~~~Q~~~L~~~LTV~E~L~~ 445 (474)
|++|++.+++.+|++||+.+
T Consensus 80 ~~~q~~~~~~~~t~~~~l~~ 99 (178)
T cd03229 80 MVFQDFALFPHLTVLENIAL 99 (178)
T ss_pred EEecCCccCCCCCHHHheee
Confidence 99999999988999999865
No 156
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.78 E-value=1.2e-18 Score=163.90 Aligned_cols=107 Identities=29% Similarity=0.426 Sum_probs=87.1
Q ss_pred CCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc---chHHhhcceEEEcCCC--CCC
Q psy7411 360 TGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY---EMGKVRESLGLCPQYD--LLF 434 (474)
Q Consensus 360 ~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~---~~~~ir~~IG~~~Q~~--~L~ 434 (474)
+++.+++++||++.+||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. .....++.++|++|++ .++
T Consensus 3 ~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 82 (190)
T TIGR01166 3 GGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLF 82 (190)
T ss_pred CccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccc
Confidence 34679999999999999999999999999999999999999999999999998842 2334567899999996 355
Q ss_pred CCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhH
Q psy7411 435 EELTVEDHLQFFAKGKEFNGITYGRALLLMMSY 467 (474)
Q Consensus 435 ~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~ 467 (474)
..|++||+.+.....+.+.++..++++++++.
T Consensus 83 -~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~ 114 (190)
T TIGR01166 83 -AADVDQDVAFGPLNLGLSEAEVERRVREALTA 114 (190)
T ss_pred -cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 46999999886555555655555666666554
No 157
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=2.3e-18 Score=160.14 Aligned_cols=95 Identities=39% Similarity=0.635 Sum_probs=85.6
Q ss_pred EEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEEEc
Q psy7411 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCP 428 (474)
Q Consensus 349 I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~~ 428 (474)
++++++++.|+ ++++++++||++++||+++|+||||||||||+++|+|+.+|++|++.++|+++.....+.++.++|++
T Consensus 1 l~~~~l~~~~~-~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (173)
T cd03230 1 IEVRNLSKRYG-KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLP 79 (173)
T ss_pred CEEEEEEEEEC-CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEe
Confidence 36899999994 56799999999999999999999999999999999999999999999999987643345667899999
Q ss_pred CCCCCCCCCCHHHHHH
Q psy7411 429 QYDLLFEELTVEDHLQ 444 (474)
Q Consensus 429 Q~~~L~~~LTV~E~L~ 444 (474)
|++.+++.+|+.||+.
T Consensus 80 q~~~~~~~~tv~~~~~ 95 (173)
T cd03230 80 EEPSLYENLTVRENLK 95 (173)
T ss_pred cCCccccCCcHHHHhh
Confidence 9999999999999986
No 158
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.78 E-value=2.5e-18 Score=170.67 Aligned_cols=119 Identities=20% Similarity=0.309 Sum_probs=96.9
Q ss_pred ccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCC-----CCeeEEEECCeecCc---chH
Q psy7411 347 SGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLII-----PTSGTAYIDGHDIWY---EMG 418 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~-----PtsG~i~i~G~dI~~---~~~ 418 (474)
..++++|+++.| +.+++++++||++.+||+++|+||||||||||+++|+|+.+ |++|+|.++|+++.. ...
T Consensus 19 ~~l~~~nl~~~~-~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 97 (267)
T PRK14237 19 IALSTKDLHVYY-GKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVY 97 (267)
T ss_pred eEEEEeeEEEEE-CCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChH
Confidence 358999999999 56789999999999999999999999999999999999986 589999999998853 234
Q ss_pred HhhcceEEEcCCCCCCCCCCHHHHHHHHHhcCCC-CHHHHHHHHHHHHhH
Q psy7411 419 KVRESLGLCPQYDLLFEELTVEDHLQFFAKGKEF-NGITYGRALLLMMSY 467 (474)
Q Consensus 419 ~ir~~IG~~~Q~~~L~~~LTV~E~L~~~~~lkg~-~~~~~~~~l~~~~~~ 467 (474)
.+++.+||+||++.+++ .|++||+.+.....+. .+++..+++.+++..
T Consensus 98 ~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~ 146 (267)
T PRK14237 98 EMRKHIGMVFQRPNPFA-KSIYENITFALERAGVKDKKVLDEIVETSLKQ 146 (267)
T ss_pred HHhcceEEEecCCcccc-ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHH
Confidence 56778999999988887 5999999886544443 333444555555543
No 159
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=2.5e-18 Score=168.81 Aligned_cols=120 Identities=20% Similarity=0.301 Sum_probs=97.2
Q ss_pred ccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCC--C---CeeEEEECCeecCc---chH
Q psy7411 347 SGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLII--P---TSGTAYIDGHDIWY---EMG 418 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~--P---tsG~i~i~G~dI~~---~~~ 418 (474)
..++++|+++.| +++.+++++||++++||+++|+||||||||||+++|+|+.+ | ++|++.++|+++.. ...
T Consensus 5 ~~i~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 83 (253)
T PRK14261 5 IILSTKNLNLWY-GEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVV 83 (253)
T ss_pred ceEEEeeeEEEE-CCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchh
Confidence 358999999999 56789999999999999999999999999999999999975 3 48999999998854 234
Q ss_pred HhhcceEEEcCCCCCCCCCCHHHHHHHHHhcCCC-CHHHHHHHHHHHHhHh
Q psy7411 419 KVRESLGLCPQYDLLFEELTVEDHLQFFAKGKEF-NGITYGRALLLMMSYV 468 (474)
Q Consensus 419 ~ir~~IG~~~Q~~~L~~~LTV~E~L~~~~~lkg~-~~~~~~~~l~~~~~~~ 468 (474)
+.++.++|++|++.+++. ||+||+.+..+.++. +..+.++.+.+++..+
T Consensus 84 ~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~ 133 (253)
T PRK14261 84 ALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGEKNKKTLDTIVEKSLKGA 133 (253)
T ss_pred hhhceEEEEecCCccCcc-cHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHh
Confidence 567789999999988875 999999987665553 2334445555555543
No 160
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=1.9e-18 Score=173.45 Aligned_cols=118 Identities=27% Similarity=0.414 Sum_probs=95.1
Q ss_pred cEEEEeeEEEEcCC----ceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc------ch
Q psy7411 348 GIQLRGLTKIYKTG----KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY------EM 417 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~----~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~------~~ 417 (474)
.++++|+++.|++. ..+++++||++++||+++|+||||||||||+++|+|+.+|++|++.++|+++.. ..
T Consensus 6 ~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 85 (289)
T PRK13645 6 DIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEV 85 (289)
T ss_pred eEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccH
Confidence 48899999999532 259999999999999999999999999999999999999999999999998742 23
Q ss_pred HHhhcceEEEcCCCC--CCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q psy7411 418 GKVRESLGLCPQYDL--LFEELTVEDHLQFFAKGKEFNGITYGRALLLMMS 466 (474)
Q Consensus 418 ~~ir~~IG~~~Q~~~--L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~ 466 (474)
.++|+.+||++|++. +++ .|++||+.+....++...++..+++.+++.
T Consensus 86 ~~~~~~i~~v~q~~~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~ll~ 135 (289)
T PRK13645 86 KRLRKEIGLVFQFPEYQLFQ-ETIEKDIAFGPVNLGENKQEAYKKVPELLK 135 (289)
T ss_pred HHHhccEEEEEeCcchhhhh-hHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 456778999999863 444 599999987655455555555555555554
No 161
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=2.6e-18 Score=168.61 Aligned_cols=99 Identities=33% Similarity=0.431 Sum_probs=88.0
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcc-hHH-hhcceE
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYE-MGK-VRESLG 425 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~-~~~-ir~~IG 425 (474)
.++++|+++.| +++++++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++... ..+ .+..++
T Consensus 5 ~l~~~~l~~~~-~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 83 (255)
T PRK11300 5 LLSVSGLMMRF-GGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVV 83 (255)
T ss_pred eEEEeeEEEEE-CCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeE
Confidence 58899999999 457899999999999999999999999999999999999999999999999988642 222 345689
Q ss_pred EEcCCCCCCCCCCHHHHHHHHH
Q psy7411 426 LCPQYDLLFEELTVEDHLQFFA 447 (474)
Q Consensus 426 ~~~Q~~~L~~~LTV~E~L~~~~ 447 (474)
|+||++.+++.+|+.||+.+..
T Consensus 84 ~~~q~~~~~~~~tv~enl~~~~ 105 (255)
T PRK11300 84 RTFQHVRLFREMTVIENLLVAQ 105 (255)
T ss_pred EeccCcccCCCCcHHHHHHHhh
Confidence 9999999999999999998753
No 162
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=2.6e-18 Score=168.23 Aligned_cols=103 Identities=27% Similarity=0.501 Sum_probs=88.9
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCC-----CeeEEEECCeecCc---chHH
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIP-----TSGTAYIDGHDIWY---EMGK 419 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~P-----tsG~i~i~G~dI~~---~~~~ 419 (474)
.++++|+++.| +++.+++++||++++||+++|+||||||||||+++|+|+.+| ++|++.++|.++.. ....
T Consensus 3 ~l~~~~l~~~~-~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~ 81 (250)
T PRK14262 3 IIEIENFSAYY-GEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTE 81 (250)
T ss_pred eEEEEeeEEEe-CCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHH
Confidence 47899999999 457899999999999999999999999999999999999874 89999999998753 1234
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHHhcCCC
Q psy7411 420 VRESLGLCPQYDLLFEELTVEDHLQFFAKGKEF 452 (474)
Q Consensus 420 ir~~IG~~~Q~~~L~~~LTV~E~L~~~~~lkg~ 452 (474)
.++.++|++|++.+++ .|++||+.+.....+.
T Consensus 82 ~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~ 113 (250)
T PRK14262 82 YRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHGV 113 (250)
T ss_pred hhhhEEEEecCCccCc-ccHHHHHHHHHHHcCC
Confidence 5678999999999887 8999999886554443
No 163
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=3.3e-18 Score=167.66 Aligned_cols=118 Identities=20% Similarity=0.310 Sum_probs=95.3
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCC-----CCeeEEEECCeecCc---chHH
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLII-----PTSGTAYIDGHDIWY---EMGK 419 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~-----PtsG~i~i~G~dI~~---~~~~ 419 (474)
.++++|+++.| +.+++++++||++++||+++|+|+||||||||+++|+|+.+ |++|+|.++|+++.. ...+
T Consensus 4 ~l~~~~l~~~~-~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~ 82 (251)
T PRK14251 4 IISAKDVHLSY-GNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVE 82 (251)
T ss_pred eEEEEeeEEEE-CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHH
Confidence 47899999999 45789999999999999999999999999999999999987 489999999998753 2345
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHHhcCCCC-HHHHHHHHHHHHhH
Q psy7411 420 VRESLGLCPQYDLLFEELTVEDHLQFFAKGKEFN-GITYGRALLLMMSY 467 (474)
Q Consensus 420 ir~~IG~~~Q~~~L~~~LTV~E~L~~~~~lkg~~-~~~~~~~l~~~~~~ 467 (474)
.++.++|++|++.+++ .|++||+.+.....+.. .+...+++++++..
T Consensus 83 ~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~ 130 (251)
T PRK14251 83 LRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQ 130 (251)
T ss_pred hhccEEEEecCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 6778999999998886 79999998765544443 23334445554443
No 164
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.78 E-value=3.4e-18 Score=167.47 Aligned_cols=117 Identities=26% Similarity=0.450 Sum_probs=94.2
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCC--CC---CeeEEEECCeecCc---chHH
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLI--IP---TSGTAYIDGHDIWY---EMGK 419 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~--~P---tsG~i~i~G~dI~~---~~~~ 419 (474)
.++++|+++.| +++.+++++||++++||+++|+||||||||||+++|+|+. +| ++|+|.++|+++.. ....
T Consensus 5 ~l~~~~l~~~~-~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 83 (252)
T PRK14239 5 ILQVSDLSVYY-NKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVD 83 (252)
T ss_pred eEEEEeeEEEE-CCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHh
Confidence 58899999999 4568999999999999999999999999999999999985 46 59999999998842 2234
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHHhcCCCC-HHHHHHHHHHHHh
Q psy7411 420 VRESLGLCPQYDLLFEELTVEDHLQFFAKGKEFN-GITYGRALLLMMS 466 (474)
Q Consensus 420 ir~~IG~~~Q~~~L~~~LTV~E~L~~~~~lkg~~-~~~~~~~l~~~~~ 466 (474)
.|+.++|+||++.+++ +|++||+.+.....+.. .++..+++++++.
T Consensus 84 ~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~ 130 (252)
T PRK14239 84 LRKEIGMVFQQPNPFP-MSIYENVVYGLRLKGIKDKQVLDEAVEKSLK 130 (252)
T ss_pred hhhcEEEEecCCccCc-CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 5678999999998887 79999998875555543 2334444454443
No 165
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.78 E-value=3.1e-18 Score=167.72 Aligned_cols=116 Identities=22% Similarity=0.285 Sum_probs=94.5
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCC-----eeEEEECCeecCc---chHH
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPT-----SGTAYIDGHDIWY---EMGK 419 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~Pt-----sG~i~i~G~dI~~---~~~~ 419 (474)
.++++|+++.| +++.+++++||++++||+++|+|+||||||||+++|+|+.+|+ +|+|.++|+++.. ....
T Consensus 4 ~l~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 82 (252)
T PRK14272 4 LLSAQDVNIYY-GDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVA 82 (252)
T ss_pred EEEEeeeEEEE-CCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHH
Confidence 47899999999 4578999999999999999999999999999999999999875 8999999998853 2335
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHHhcCCC-CHHHHHHHHHHH
Q psy7411 420 VRESLGLCPQYDLLFEELTVEDHLQFFAKGKEF-NGITYGRALLLM 464 (474)
Q Consensus 420 ir~~IG~~~Q~~~L~~~LTV~E~L~~~~~lkg~-~~~~~~~~l~~~ 464 (474)
.++.+||++|++.+++.+|+.||+.+.....+. ..++..++.+++
T Consensus 83 ~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~ 128 (252)
T PRK14272 83 MRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERS 128 (252)
T ss_pred hhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 577899999999999999999999876544333 233344444443
No 166
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.78 E-value=2.3e-18 Score=170.62 Aligned_cols=100 Identities=27% Similarity=0.405 Sum_probs=89.5
Q ss_pred cccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chHHhhcce
Q psy7411 346 ASGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMGKVRESL 424 (474)
Q Consensus 346 ~~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~~ir~~I 424 (474)
...++++|+++.| +++.+++++||++.+||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ...+.++.+
T Consensus 5 ~~~l~i~~l~~~~-~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (265)
T PRK10253 5 VARLRGEQLTLGY-GKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRI 83 (265)
T ss_pred ccEEEEEEEEEEE-CCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence 3568999999999 45789999999999999999999999999999999999999999999999998753 234456679
Q ss_pred EEEcCCCCCCCCCCHHHHHHHH
Q psy7411 425 GLCPQYDLLFEELTVEDHLQFF 446 (474)
Q Consensus 425 G~~~Q~~~L~~~LTV~E~L~~~ 446 (474)
||+||++.+++.+|++||+.+.
T Consensus 84 ~~v~q~~~~~~~~tv~~~~~~~ 105 (265)
T PRK10253 84 GLLAQNATTPGDITVQELVARG 105 (265)
T ss_pred EEeeccCcCCCCCcHHHHHHhC
Confidence 9999999999889999999874
No 167
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.78 E-value=2.8e-18 Score=162.66 Aligned_cols=107 Identities=33% Similarity=0.494 Sum_probs=92.8
Q ss_pred cEEEEeeEEEEcC-----CceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCC--CCCeeEEEECCeecCcchHHh
Q psy7411 348 GIQLRGLTKIYKT-----GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLI--IPTSGTAYIDGHDIWYEMGKV 420 (474)
Q Consensus 348 ~I~i~~Lsk~y~~-----~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~--~PtsG~i~i~G~dI~~~~~~i 420 (474)
.++++++++.|++ .+++++++||++++||+++|+||||||||||+++|+|+. +|++|++.++|+++.. ...
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~--~~~ 80 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK--RSF 80 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch--Hhh
Confidence 3789999999953 267999999999999999999999999999999999999 9999999999998864 256
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHHhcCCCCHHH
Q psy7411 421 RESLGLCPQYDLLFEELTVEDHLQFFAKGKEFNGIT 456 (474)
Q Consensus 421 r~~IG~~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~ 456 (474)
++.++||+|++.+++.+|+.||+.+..+...++.-+
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~~LS~G~ 116 (194)
T cd03213 81 RKIIGYVPQDDILHPTLTVRETLMFAAKLRGLSGGE 116 (194)
T ss_pred hheEEEccCcccCCCCCcHHHHHHHHHHhccCCHHH
Confidence 778999999999999999999998866543444433
No 168
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.78 E-value=1.9e-18 Score=171.19 Aligned_cols=95 Identities=25% Similarity=0.366 Sum_probs=86.4
Q ss_pred ccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEE
Q psy7411 347 SGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGL 426 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~ 426 (474)
..++++|+++.| +++.+++++||++.+||+++|+||||||||||+++|+|+.+|++|+|.++|.++. ..++.++|
T Consensus 11 ~~l~i~~l~~~~-~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~----~~~~~i~~ 85 (257)
T PRK11247 11 TPLLLNAVSKRY-GERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA----EAREDTRL 85 (257)
T ss_pred CcEEEEEEEEEE-CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH----HhhCceEE
Confidence 358999999999 4578999999999999999999999999999999999999999999999987652 45677999
Q ss_pred EcCCCCCCCCCCHHHHHHHH
Q psy7411 427 CPQYDLLFEELTVEDHLQFF 446 (474)
Q Consensus 427 ~~Q~~~L~~~LTV~E~L~~~ 446 (474)
++|++.+++.+|++||+.+.
T Consensus 86 v~q~~~l~~~~tv~enl~~~ 105 (257)
T PRK11247 86 MFQDARLLPWKKVIDNVGLG 105 (257)
T ss_pred EecCccCCCCCcHHHHHHhc
Confidence 99999999989999999874
No 169
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=3.5e-18 Score=167.61 Aligned_cols=118 Identities=21% Similarity=0.362 Sum_probs=95.8
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCC-----eeEEEECCeecCc---chHH
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPT-----SGTAYIDGHDIWY---EMGK 419 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~Pt-----sG~i~i~G~dI~~---~~~~ 419 (474)
.++++|+++.| +++.+++++||++.+||+++|+||||||||||+++|+|+.+|+ +|+|.++|+++.. ....
T Consensus 4 ~l~~~~l~~~~-~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~ 82 (251)
T PRK14249 4 KIKIRGVNFFY-HKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVN 82 (251)
T ss_pred eEEEEEEEEEE-CCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHH
Confidence 47899999999 4567999999999999999999999999999999999999997 6999999998753 2335
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHHhcCCCC-HHHHHHHHHHHHhH
Q psy7411 420 VRESLGLCPQYDLLFEELTVEDHLQFFAKGKEFN-GITYGRALLLMMSY 467 (474)
Q Consensus 420 ir~~IG~~~Q~~~L~~~LTV~E~L~~~~~lkg~~-~~~~~~~l~~~~~~ 467 (474)
.|+.++|+||++.+++. |++||+.+....++.. +++..++++.++++
T Consensus 83 ~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~ 130 (251)
T PRK14249 83 LRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQ 130 (251)
T ss_pred hhceEEEEecCCccCcC-cHHHHHhhHHHhcCCChhhHHHHHHHHHHHH
Confidence 67789999999998875 9999999866555543 23344444444443
No 170
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=3.6e-18 Score=174.90 Aligned_cols=122 Identities=25% Similarity=0.284 Sum_probs=101.1
Q ss_pred ccEEEEeeEEEEcC---------CceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcc-
Q psy7411 347 SGIQLRGLTKIYKT---------GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYE- 416 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~---------~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~- 416 (474)
..++++||++.|+. ...+|+++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++...
T Consensus 4 ~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~ 83 (327)
T PRK11308 4 PLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKAD 83 (327)
T ss_pred ceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCC
Confidence 35899999999952 25799999999999999999999999999999999999999999999999998632
Q ss_pred ---hHHhhcceEEEcCCC--CCCCCCCHHHHHHHHHhcC-CCCHHHHHHHHHHHHhHh
Q psy7411 417 ---MGKVRESLGLCPQYD--LLFEELTVEDHLQFFAKGK-EFNGITYGRALLLMMSYV 468 (474)
Q Consensus 417 ---~~~ir~~IG~~~Q~~--~L~~~LTV~E~L~~~~~lk-g~~~~~~~~~l~~~~~~~ 468 (474)
...+|+++||++|++ .+++.+|+.+++......+ +..+++..+++.+++..+
T Consensus 84 ~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 141 (327)
T PRK11308 84 PEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKV 141 (327)
T ss_pred HHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHC
Confidence 334677899999997 6899999999997654443 456666666667766653
No 171
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=3.4e-18 Score=167.35 Aligned_cols=116 Identities=20% Similarity=0.356 Sum_probs=94.2
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCC-----CeeEEEECCeecCc--chHHh
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIP-----TSGTAYIDGHDIWY--EMGKV 420 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~P-----tsG~i~i~G~dI~~--~~~~i 420 (474)
.++++|+++.| +++.+++++||++++||+++|+||||||||||+++|+|+.+| ++|++.++|.++.. .....
T Consensus 3 ~l~~~~l~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~ 81 (249)
T PRK14253 3 KFNIENLDLFY-GENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADL 81 (249)
T ss_pred eEEEeccEEEE-CCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHH
Confidence 47899999999 457899999999999999999999999999999999999986 59999999998742 34456
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHHhcCCCC-HHHHHHHHHHHH
Q psy7411 421 RESLGLCPQYDLLFEELTVEDHLQFFAKGKEFN-GITYGRALLLMM 465 (474)
Q Consensus 421 r~~IG~~~Q~~~L~~~LTV~E~L~~~~~lkg~~-~~~~~~~l~~~~ 465 (474)
|+.+||++|++.+++ .|+.||+.+.....+.. +++..+++.+++
T Consensus 82 ~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~ 126 (249)
T PRK14253 82 RIKVGMVFQKPNPFP-MSIYENVAYGLRAQGIKDKKVLDEVVERSL 126 (249)
T ss_pred HhheeEEecCCCcCc-ccHHHHHHhHHHhcCCCchHHHHHHHHHHH
Confidence 778999999999887 79999998765444432 333344444443
No 172
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=6e-18 Score=169.03 Aligned_cols=118 Identities=19% Similarity=0.311 Sum_probs=96.0
Q ss_pred ccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCC-----CeeEEEECCeecCc--chHH
Q psy7411 347 SGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIP-----TSGTAYIDGHDIWY--EMGK 419 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~P-----tsG~i~i~G~dI~~--~~~~ 419 (474)
..++++|+++.| +++++++++||++++||+++|+|+||||||||+++|+|+.+| ++|+|.++|+++.. ....
T Consensus 20 ~~l~i~nl~~~~-~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (276)
T PRK14271 20 PAMAAVNLTLGF-AGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLE 98 (276)
T ss_pred cEEEEeeEEEEE-CCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHH
Confidence 468999999999 467899999999999999999999999999999999999986 69999999998753 2335
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHHhcCC-CCHHHHHHHHHHHHh
Q psy7411 420 VRESLGLCPQYDLLFEELTVEDHLQFFAKGKE-FNGITYGRALLLMMS 466 (474)
Q Consensus 420 ir~~IG~~~Q~~~L~~~LTV~E~L~~~~~lkg-~~~~~~~~~l~~~~~ 466 (474)
.++.++|++|++.+++ .|++||+.+.....+ .+.++..++..+++.
T Consensus 99 ~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~ 145 (276)
T PRK14271 99 FRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLT 145 (276)
T ss_pred HhhheEEeccCCccCC-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 6778999999998888 799999987543322 344444444444444
No 173
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.77 E-value=2.8e-18 Score=184.52 Aligned_cols=119 Identities=24% Similarity=0.385 Sum_probs=96.7
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcc-h-HHhhcceE
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYE-M-GKVRESLG 425 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~-~-~~ir~~IG 425 (474)
.++++|+++.| +++++++++||++.+||+++|+||||||||||+++|+|+.+|++|+|.++|+++... . ...++.+|
T Consensus 4 ~i~~~~l~~~~-~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 82 (501)
T PRK10762 4 LLQLKGIDKAF-PGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIG 82 (501)
T ss_pred eEEEeeeEEEe-CCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEE
Confidence 58999999999 457899999999999999999999999999999999999999999999999988532 2 22356799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHhH
Q psy7411 426 LCPQYDLLFEELTVEDHLQFFAKGK----EFNGITYGRALLLMMSY 467 (474)
Q Consensus 426 ~~~Q~~~L~~~LTV~E~L~~~~~lk----g~~~~~~~~~l~~~~~~ 467 (474)
|++|++.+++.+||+||+.+....+ ..+.++..+++++.+..
T Consensus 83 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 128 (501)
T PRK10762 83 IIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLAR 128 (501)
T ss_pred EEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHH
Confidence 9999999999999999998754322 12334444455555544
No 174
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.77 E-value=6.9e-18 Score=167.96 Aligned_cols=104 Identities=20% Similarity=0.426 Sum_probs=90.3
Q ss_pred ccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCC-----CCeeEEEECCeecCc---chH
Q psy7411 347 SGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLII-----PTSGTAYIDGHDIWY---EMG 418 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~-----PtsG~i~i~G~dI~~---~~~ 418 (474)
..++++|+++.| +++.+++++||++++||+++|+||||||||||+++|+|+.+ |++|++.++|+++.. ...
T Consensus 24 ~~l~~~nl~~~~-~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~ 102 (272)
T PRK14236 24 TALEVRNLNLFY-GDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVA 102 (272)
T ss_pred cEEEEEEEEEEE-CCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHH
Confidence 468999999999 45689999999999999999999999999999999999987 489999999998853 233
Q ss_pred HhhcceEEEcCCCCCCCCCCHHHHHHHHHhcCCC
Q psy7411 419 KVRESLGLCPQYDLLFEELTVEDHLQFFAKGKEF 452 (474)
Q Consensus 419 ~ir~~IG~~~Q~~~L~~~LTV~E~L~~~~~lkg~ 452 (474)
..|+.++|++|++.+++. |++||+.+....++.
T Consensus 103 ~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~ 135 (272)
T PRK14236 103 ELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQGI 135 (272)
T ss_pred HHhccEEEEecCCccCcc-cHHHHHHHHHHhcCC
Confidence 567789999999988886 999999876555554
No 175
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=5.9e-18 Score=165.94 Aligned_cols=118 Identities=17% Similarity=0.323 Sum_probs=94.1
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCC---CCC--CeeEEEECCeecCc---chHH
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGL---IIP--TSGTAYIDGHDIWY---EMGK 419 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL---~~P--tsG~i~i~G~dI~~---~~~~ 419 (474)
.++++|+++.| +.+++++++||++++||+++|+||||||||||+++|+|+ .+| ++|++.++|+++.. ....
T Consensus 3 ~l~~~~~~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 81 (250)
T PRK14245 3 KIDARDVNFWY-GDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDE 81 (250)
T ss_pred EEEEEEEEEEE-CCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHH
Confidence 57899999999 457899999999999999999999999999999999997 455 58999999998853 2345
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHHhcCCCC-HHHHHHHHHHHHhH
Q psy7411 420 VRESLGLCPQYDLLFEELTVEDHLQFFAKGKEFN-GITYGRALLLMMSY 467 (474)
Q Consensus 420 ir~~IG~~~Q~~~L~~~LTV~E~L~~~~~lkg~~-~~~~~~~l~~~~~~ 467 (474)
.++.++|+||++.+++ .|+.||+.+....++.. .++..+++++.++.
T Consensus 82 ~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~ 129 (250)
T PRK14245 82 LRKNVGMVFQRPNPFP-KSIFENVAYGLRVNGVKDNAFIRQRVEETLKG 129 (250)
T ss_pred HhhheEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 6778999999998887 59999998765555432 23334444444443
No 176
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=6.7e-18 Score=167.44 Aligned_cols=103 Identities=21% Similarity=0.381 Sum_probs=88.6
Q ss_pred ccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCC-----CCeeEEEECCeecCc---chH
Q psy7411 347 SGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLII-----PTSGTAYIDGHDIWY---EMG 418 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~-----PtsG~i~i~G~dI~~---~~~ 418 (474)
+.++++|+++.| +++.+++++||++++||+++|+|+||||||||+++|+|+.+ |++|++.++|+++.. ...
T Consensus 20 ~~l~~~~l~~~~-~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (268)
T PRK14248 20 HILEVKDLSIYY-GEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVV 98 (268)
T ss_pred ceEEEEEEEEEe-CCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHH
Confidence 468999999999 45789999999999999999999999999999999999864 799999999998853 223
Q ss_pred HhhcceEEEcCCCCCCCCCCHHHHHHHHHhcCC
Q psy7411 419 KVRESLGLCPQYDLLFEELTVEDHLQFFAKGKE 451 (474)
Q Consensus 419 ~ir~~IG~~~Q~~~L~~~LTV~E~L~~~~~lkg 451 (474)
..++.+||++|++.+++. |++||+.+.....+
T Consensus 99 ~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~ 130 (268)
T PRK14248 99 NLRREIGMVFQKPNPFPK-SIYNNITHALKYAG 130 (268)
T ss_pred HHhccEEEEecCCccCcc-cHHHHHHHHHHhcC
Confidence 456789999999988885 99999987644333
No 177
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=4.4e-18 Score=168.25 Aligned_cols=120 Identities=22% Similarity=0.315 Sum_probs=96.9
Q ss_pred ccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECC------eecCc-chHH
Q psy7411 347 SGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDG------HDIWY-EMGK 419 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G------~dI~~-~~~~ 419 (474)
+.++++|++|+| +++.+++++||++.+||+++|+||||||||||+++|+|+.+|++|++.++| +++.. ...+
T Consensus 9 ~~i~~~~~~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~ 87 (257)
T PRK14246 9 DVFNISRLYLYI-NDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIK 87 (257)
T ss_pred hheeeeeEEEec-CCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHH
Confidence 468999999999 567899999999999999999999999999999999999999997777766 44432 2335
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHHhcCCC-CHHHHHHHHHHHHhH
Q psy7411 420 VRESLGLCPQYDLLFEELTVEDHLQFFAKGKEF-NGITYGRALLLMMSY 467 (474)
Q Consensus 420 ir~~IG~~~Q~~~L~~~LTV~E~L~~~~~lkg~-~~~~~~~~l~~~~~~ 467 (474)
.|+.++|++|++.+++.+|+.||+.+....++. ++++..+++.+++..
T Consensus 88 ~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (257)
T PRK14246 88 LRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRK 136 (257)
T ss_pred HhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 677899999999999999999999987655443 344454555555544
No 178
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.77 E-value=5.3e-18 Score=167.39 Aligned_cols=117 Identities=20% Similarity=0.414 Sum_probs=94.0
Q ss_pred ccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCC-----CeeEEEECCeecCc---chH
Q psy7411 347 SGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIP-----TSGTAYIDGHDIWY---EMG 418 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~P-----tsG~i~i~G~dI~~---~~~ 418 (474)
..++++|+++.| +++.+++++||++++||+++|+|+||||||||+++|+|+.+| ++|++.++|+++.. ...
T Consensus 6 ~~l~~~~l~~~~-~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (259)
T PRK14260 6 PAIKVKDLSFYY-NTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININ 84 (259)
T ss_pred ceEEEEEEEEEE-CCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchH
Confidence 358999999999 457899999999999999999999999999999999999885 58999999998752 234
Q ss_pred HhhcceEEEcCCCCCCCCCCHHHHHHHHHhcCC-CCHHHHHHHHHHHH
Q psy7411 419 KVRESLGLCPQYDLLFEELTVEDHLQFFAKGKE-FNGITYGRALLLMM 465 (474)
Q Consensus 419 ~ir~~IG~~~Q~~~L~~~LTV~E~L~~~~~lkg-~~~~~~~~~l~~~~ 465 (474)
..++.++|++|++.+++ +|++||+.+.....+ .++.+..+.+++.+
T Consensus 85 ~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l 131 (259)
T PRK14260 85 RLRRQIGMVFQRPNPFP-MSIYENVAYGVRISAKLPQADLDEIVESAL 131 (259)
T ss_pred hhhhheEEEecccccCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 55678999999998887 899999987654433 23333333444433
No 179
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.77 E-value=3.9e-18 Score=163.33 Aligned_cols=93 Identities=24% Similarity=0.390 Sum_probs=83.2
Q ss_pred EEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEEEcC
Q psy7411 350 QLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQ 429 (474)
Q Consensus 350 ~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~~Q 429 (474)
+++|+++.|+ . +++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ....++.++|++|
T Consensus 2 ~~~~l~~~~~-~--~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~-~~~~~~~i~~v~q 77 (213)
T TIGR01277 2 ALDKVRYEYE-H--LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTG-LAPYQRPVSMLFQ 77 (213)
T ss_pred eEEeeeEEeC-C--cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccc-CChhccceEEEec
Confidence 6899999994 2 5689999999999999999999999999999999999999999999998853 2235677999999
Q ss_pred CCCCCCCCCHHHHHHHH
Q psy7411 430 YDLLFEELTVEDHLQFF 446 (474)
Q Consensus 430 ~~~L~~~LTV~E~L~~~ 446 (474)
++.+++.+|+.||+.+.
T Consensus 78 ~~~~~~~~t~~en~~~~ 94 (213)
T TIGR01277 78 ENNLFAHLTVRQNIGLG 94 (213)
T ss_pred cCccCCCCcHHHHHHhH
Confidence 99999999999999864
No 180
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.76 E-value=5.9e-18 Score=168.46 Aligned_cols=117 Identities=21% Similarity=0.352 Sum_probs=94.8
Q ss_pred ccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCC-----CCeeEEEECCeecCc---chH
Q psy7411 347 SGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLII-----PTSGTAYIDGHDIWY---EMG 418 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~-----PtsG~i~i~G~dI~~---~~~ 418 (474)
..++++|+++.|+ ++.+++++||++++||+++|+|+||||||||+++|+|+.+ |++|+|.++|+++.. ...
T Consensus 23 ~~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 101 (271)
T PRK14238 23 VVFDTQNLNLWYG-EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVE 101 (271)
T ss_pred eEEEEeeeEEEEC-CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHH
Confidence 3689999999994 5679999999999999999999999999999999999987 699999999998742 234
Q ss_pred HhhcceEEEcCCCCCCCCCCHHHHHHHHHhcCCCC-HHHHHHHHHHHH
Q psy7411 419 KVRESLGLCPQYDLLFEELTVEDHLQFFAKGKEFN-GITYGRALLLMM 465 (474)
Q Consensus 419 ~ir~~IG~~~Q~~~L~~~LTV~E~L~~~~~lkg~~-~~~~~~~l~~~~ 465 (474)
..++.+||++|++.+++. |+.||+.+....++.. .+...+.+.+++
T Consensus 102 ~~~~~i~~v~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l 148 (271)
T PRK14238 102 ELRTNVGMVFQKPNPFPK-SIYDNVTYGPKIHGIKDKKTLDEIVEKSL 148 (271)
T ss_pred HHhhhEEEEecCCccccc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 567789999999988874 9999998865444432 223344444444
No 181
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.76 E-value=5.3e-18 Score=167.50 Aligned_cols=98 Identities=26% Similarity=0.368 Sum_probs=87.2
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCC---eeEEEECCeecCc------chH
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPT---SGTAYIDGHDIWY------EMG 418 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~Pt---sG~i~i~G~dI~~------~~~ 418 (474)
.++++||++.| +++++++++||++.+||+++|+||||||||||+++|+|+.+|+ +|+|.++|+++.. ...
T Consensus 4 ~l~~~nl~~~~-~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (262)
T PRK09984 4 IIRVEKLAKTF-NQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIR 82 (262)
T ss_pred EEEEeeEEEEe-CCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHH
Confidence 57899999999 4578999999999999999999999999999999999999986 4999999998753 223
Q ss_pred HhhcceEEEcCCCCCCCCCCHHHHHHHH
Q psy7411 419 KVRESLGLCPQYDLLFEELTVEDHLQFF 446 (474)
Q Consensus 419 ~ir~~IG~~~Q~~~L~~~LTV~E~L~~~ 446 (474)
..++.++|+||+..+++.+|+.||+.+.
T Consensus 83 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~ 110 (262)
T PRK09984 83 KSRANTGYIFQQFNLVNRLSVLENVLIG 110 (262)
T ss_pred HHHhheEEEccccccccCCcHHHHHHhh
Confidence 4567799999999999999999999864
No 182
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.76 E-value=1e-16 Score=190.53 Aligned_cols=117 Identities=23% Similarity=0.283 Sum_probs=99.8
Q ss_pred cEEEEeeEEEEc---CCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCC---CCeeEEEECCeecCcchHHhh
Q psy7411 348 GIQLRGLTKIYK---TGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLII---PTSGTAYIDGHDIWYEMGKVR 421 (474)
Q Consensus 348 ~I~i~~Lsk~y~---~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~---PtsG~i~i~G~dI~~~~~~ir 421 (474)
.++++||++.|+ +.+.+|+|+|+++++||+++|+||||||||||+++|+|+.+ |++|+|.++|+++.. +.|
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~---~~~ 835 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS---SFQ 835 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh---hhh
Confidence 478999999984 24679999999999999999999999999999999999987 789999999999842 467
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhH
Q psy7411 422 ESLGLCPQYDLLFEELTVEDHLQFFAKGKE---FNGITYGRALLLMMSY 467 (474)
Q Consensus 422 ~~IG~~~Q~~~L~~~LTV~E~L~~~~~lkg---~~~~~~~~~l~~~~~~ 467 (474)
+.+|||+|++.+++.+||+||+.+.+.++. .++++..+++++++..
T Consensus 836 ~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~ 884 (1394)
T TIGR00956 836 RSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKL 884 (1394)
T ss_pred cceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999999999877653 3455556666666654
No 183
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.76 E-value=2e-18 Score=163.31 Aligned_cols=115 Identities=23% Similarity=0.413 Sum_probs=102.7
Q ss_pred EEEEeeEEEEcCCce--eeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEE
Q psy7411 349 IQLRGLTKIYKTGKK--AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGL 426 (474)
Q Consensus 349 I~i~~Lsk~y~~~~~--aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~ 426 (474)
+.+++++.+|+ ++. +++|+|+++.+||.++++||+|||||||+++++|+.+|+.|+|.++|+.|...- ..-|+
T Consensus 4 l~~~~~sl~y~-g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPg----aergv 78 (259)
T COG4525 4 LNVSHLSLSYE-GKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPG----AERGV 78 (259)
T ss_pred eehhheEEecC-CcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCC----cccee
Confidence 56788999994 454 999999999999999999999999999999999999999999999999986431 22489
Q ss_pred EcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhHh
Q psy7411 427 CPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSYV 468 (474)
Q Consensus 427 ~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~~ 468 (474)
|+|++.|+|.+|+.||++|..++.|+++++-.+....|+..|
T Consensus 79 VFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~V 120 (259)
T COG4525 79 VFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALV 120 (259)
T ss_pred EeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999998888888887654
No 184
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.76 E-value=2.5e-18 Score=165.93 Aligned_cols=98 Identities=23% Similarity=0.439 Sum_probs=86.9
Q ss_pred EEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chHHhhcceEEE
Q psy7411 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMGKVRESLGLC 427 (474)
Q Consensus 349 I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~~ir~~IG~~ 427 (474)
++++|+++.|++.+.+++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.. ...+.++.++|+
T Consensus 3 l~~~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 82 (229)
T cd03254 3 IEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVV 82 (229)
T ss_pred EEEEEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEe
Confidence 6899999999533579999999999999999999999999999999999999999999999998753 334567779999
Q ss_pred cCCCCCCCCCCHHHHHHHHH
Q psy7411 428 PQYDLLFEELTVEDHLQFFA 447 (474)
Q Consensus 428 ~Q~~~L~~~LTV~E~L~~~~ 447 (474)
+|++.+++. |+.||+.++.
T Consensus 83 ~q~~~~~~~-tv~~~~~~~~ 101 (229)
T cd03254 83 LQDTFLFSG-TIMENIRLGR 101 (229)
T ss_pred cCCchhhhh-HHHHHHhccC
Confidence 999988876 9999998764
No 185
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=7.8e-18 Score=165.10 Aligned_cols=104 Identities=24% Similarity=0.394 Sum_probs=89.0
Q ss_pred ccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCC--C---CeeEEEECCeecCc---chH
Q psy7411 347 SGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLII--P---TSGTAYIDGHDIWY---EMG 418 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~--P---tsG~i~i~G~dI~~---~~~ 418 (474)
..++++|+++.|+ .+.+++++||++.+||+++|+|+||||||||+++|+|+.+ | ++|+|.++|+++.. ...
T Consensus 4 ~~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14255 4 KIITSSDVHLFYG-KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVV 82 (252)
T ss_pred ceEEEEeEEEEEC-CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHH
Confidence 3589999999994 5789999999999999999999999999999999999865 5 59999999998852 233
Q ss_pred HhhcceEEEcCCCCCCCCCCHHHHHHHHHhcCCC
Q psy7411 419 KVRESLGLCPQYDLLFEELTVEDHLQFFAKGKEF 452 (474)
Q Consensus 419 ~ir~~IG~~~Q~~~L~~~LTV~E~L~~~~~lkg~ 452 (474)
..++.+||++|++.+++ .|++||+.+....++.
T Consensus 83 ~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~ 115 (252)
T PRK14255 83 QLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGV 115 (252)
T ss_pred HhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCC
Confidence 55678999999998888 6999999886555543
No 186
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=4e-18 Score=183.54 Aligned_cols=119 Identities=24% Similarity=0.343 Sum_probs=98.1
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCC--CeeEEEECCeecCcc-hH-Hhhcc
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIP--TSGTAYIDGHDIWYE-MG-KVRES 423 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~P--tsG~i~i~G~dI~~~-~~-~ir~~ 423 (474)
.++++|+++.| +++.+++++||++++||+++|+||||||||||+|+|+|+.+| ++|+|.++|+++... .. ..|+.
T Consensus 5 ~l~~~nl~~~~-~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 83 (506)
T PRK13549 5 LLEMKNITKTF-GGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAG 83 (506)
T ss_pred eEEEeeeEEEe-CCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCC
Confidence 58999999999 457899999999999999999999999999999999999996 899999999998632 22 24567
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHHHhcC--C-CCHHHHHHHHHHHHhH
Q psy7411 424 LGLCPQYDLLFEELTVEDHLQFFAKGK--E-FNGITYGRALLLMMSY 467 (474)
Q Consensus 424 IG~~~Q~~~L~~~LTV~E~L~~~~~lk--g-~~~~~~~~~l~~~~~~ 467 (474)
+||+||++.+++.+|++||+.+....+ + .+.++..+++++++..
T Consensus 84 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 130 (506)
T PRK13549 84 IAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQ 130 (506)
T ss_pred eEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHH
Confidence 999999999999999999998865432 2 2444455556666554
No 187
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.76 E-value=4.9e-18 Score=164.07 Aligned_cols=100 Identities=22% Similarity=0.364 Sum_probs=88.9
Q ss_pred EEEEeeEEEEcCC---ceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCC---CCeeEEEECCeecCcchHHhhc
Q psy7411 349 IQLRGLTKIYKTG---KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLII---PTSGTAYIDGHDIWYEMGKVRE 422 (474)
Q Consensus 349 I~i~~Lsk~y~~~---~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~---PtsG~i~i~G~dI~~~~~~ir~ 422 (474)
+.++|++++|++. +++++++||++++||+++|+||||||||||+++|+|+.+ |++|++.++|+++.. ...|+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~--~~~~~ 81 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKP--DQFQK 81 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECCh--HHhcc
Confidence 5688999999643 689999999999999999999999999999999999999 999999999998752 35677
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHHhcC
Q psy7411 423 SLGLCPQYDLLFEELTVEDHLQFFAKGK 450 (474)
Q Consensus 423 ~IG~~~Q~~~L~~~LTV~E~L~~~~~lk 450 (474)
.++|++|++.+++.+|++||+.+.....
T Consensus 82 ~i~~~~q~~~~~~~~tv~enl~~~~~~~ 109 (226)
T cd03234 82 CVAYVRQDDILLPGLTVRETLTYTAILR 109 (226)
T ss_pred cEEEeCCCCccCcCCcHHHHHHHHHHhh
Confidence 8999999999999999999999865443
No 188
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.76 E-value=7.8e-18 Score=157.79 Aligned_cols=96 Identities=23% Similarity=0.384 Sum_probs=85.3
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcc--hHHhhcceE
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYE--MGKVRESLG 425 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~--~~~ir~~IG 425 (474)
.++++|+++.| +++++||++++||+++|+||||||||||+++|+|+.+|++|++.++|+++... ....++.++
T Consensus 4 ~l~~~~l~~~~-----~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (182)
T cd03215 4 VLEVRGLSVKG-----AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIA 78 (182)
T ss_pred EEEEeccEEEe-----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeE
Confidence 57899999988 89999999999999999999999999999999999999999999999988642 234567899
Q ss_pred EEcCCC---CCCCCCCHHHHHHHHHh
Q psy7411 426 LCPQYD---LLFEELTVEDHLQFFAK 448 (474)
Q Consensus 426 ~~~Q~~---~L~~~LTV~E~L~~~~~ 448 (474)
|++|++ .+++.+|++||+.+...
T Consensus 79 ~~~q~~~~~~~~~~~t~~e~l~~~~~ 104 (182)
T cd03215 79 YVPEDRKREGLVLDLSVAENIALSSL 104 (182)
T ss_pred EecCCcccCcccCCCcHHHHHHHHhh
Confidence 999984 57888999999987643
No 189
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=9.8e-18 Score=168.31 Aligned_cols=104 Identities=21% Similarity=0.359 Sum_probs=88.9
Q ss_pred ccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCC-----CCeeEEEECCeecCc---chH
Q psy7411 347 SGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLII-----PTSGTAYIDGHDIWY---EMG 418 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~-----PtsG~i~i~G~dI~~---~~~ 418 (474)
..++++|+++.| +++.+++++||++++||+++|+||||||||||+++|+|+.+ |++|+|.++|+++.. ...
T Consensus 38 ~~l~~~~l~~~~-~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~ 116 (286)
T PRK14275 38 PHVVAKNFSIYY-GEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEV 116 (286)
T ss_pred eEEEEeeeEEEE-CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchH
Confidence 458999999999 45679999999999999999999999999999999999864 499999999998753 223
Q ss_pred HhhcceEEEcCCCCCCCCCCHHHHHHHHHhcCCC
Q psy7411 419 KVRESLGLCPQYDLLFEELTVEDHLQFFAKGKEF 452 (474)
Q Consensus 419 ~ir~~IG~~~Q~~~L~~~LTV~E~L~~~~~lkg~ 452 (474)
..|+.+||++|++.+++. |+.||+.+....++.
T Consensus 117 ~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~ 149 (286)
T PRK14275 117 LLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGI 149 (286)
T ss_pred HhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCC
Confidence 457789999999988875 999999986555454
No 190
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.76 E-value=3.2e-18 Score=190.48 Aligned_cols=112 Identities=25% Similarity=0.398 Sum_probs=98.8
Q ss_pred cEEEEeeEEEEc-CCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chHHhhcceE
Q psy7411 348 GIQLRGLTKIYK-TGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMGKVRESLG 425 (474)
Q Consensus 348 ~I~i~~Lsk~y~-~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~~ir~~IG 425 (474)
.++++|++++|+ +++++++|+||++++||.++++|+||||||||+++|+|+++|++|+|.++|.++.. +.+.+|+++|
T Consensus 451 ~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~ 530 (686)
T TIGR03797 451 AIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLG 530 (686)
T ss_pred eEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccE
Confidence 589999999995 34679999999999999999999999999999999999999999999999999975 5678899999
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy7411 426 LCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLL 463 (474)
Q Consensus 426 ~~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~ 463 (474)
+|||++.+|+. |++||+.+... .+.+++.++++.
T Consensus 531 ~v~Q~~~lf~g-TI~eNi~~~~~---~~~e~i~~al~~ 564 (686)
T TIGR03797 531 VVLQNGRLMSG-SIFENIAGGAP---LTLDEAWEAARM 564 (686)
T ss_pred EEccCCccCcc-cHHHHHhcCCC---CCHHHHHHHHHH
Confidence 99999999987 99999998633 456666665553
No 191
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.76 E-value=6.5e-18 Score=181.68 Aligned_cols=119 Identities=26% Similarity=0.404 Sum_probs=98.7
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc--chHHhhcceE
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY--EMGKVRESLG 425 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~--~~~~ir~~IG 425 (474)
.++++|+++.| +++.+++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. .....|+.+|
T Consensus 4 ~l~~~~l~~~~-~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~ 82 (501)
T PRK11288 4 YLSFDGIGKTF-PGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVA 82 (501)
T ss_pred eEEEeeeEEEE-CCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEE
Confidence 58899999999 45689999999999999999999999999999999999999999999999998853 2234567899
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHh--cCC-CCHHHHHHHHHHHHhH
Q psy7411 426 LCPQYDLLFEELTVEDHLQFFAK--GKE-FNGITYGRALLLMMSY 467 (474)
Q Consensus 426 ~~~Q~~~L~~~LTV~E~L~~~~~--lkg-~~~~~~~~~l~~~~~~ 467 (474)
|++|++.+++.+|+.||+.+... ..+ .+.++..+++.+++..
T Consensus 83 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 127 (501)
T PRK11288 83 IIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEH 127 (501)
T ss_pred EEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999988532 223 2444555566666654
No 192
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.76 E-value=4.1e-18 Score=164.92 Aligned_cols=99 Identities=26% Similarity=0.478 Sum_probs=86.1
Q ss_pred EEEEeeEEEEcCC-ceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chHHhhcceEE
Q psy7411 349 IQLRGLTKIYKTG-KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMGKVRESLGL 426 (474)
Q Consensus 349 I~i~~Lsk~y~~~-~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~~ir~~IG~ 426 (474)
++++|+++.|++. +.+++++||++++||+++|+||||||||||+++|+|+.+|++|++.++|+++.. .....++.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 4689999999532 379999999999999999999999999999999999999999999999998753 33456778999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHh
Q psy7411 427 CPQYDLLFEELTVEDHLQFFAK 448 (474)
Q Consensus 427 ~~Q~~~L~~~LTV~E~L~~~~~ 448 (474)
++|++.+++ .|++||+.+...
T Consensus 81 ~~q~~~~~~-~tv~enl~~~~~ 101 (234)
T cd03251 81 VSQDVFLFN-DTVAENIAYGRP 101 (234)
T ss_pred eCCCCeecc-ccHHHHhhccCC
Confidence 999998886 699999987643
No 193
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.76 E-value=7.8e-18 Score=159.31 Aligned_cols=98 Identities=27% Similarity=0.375 Sum_probs=84.3
Q ss_pred EEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEEEc
Q psy7411 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCP 428 (474)
Q Consensus 349 I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~~ 428 (474)
++++|+++.|+ ++.+++ +||++++||+++|+|+||||||||+++|+|+.+|++|++.++|.++... . ++.++|++
T Consensus 2 l~~~~l~~~~~-~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~-~--~~~~~~~~ 76 (195)
T PRK13541 2 LSLHQLQFNIE-QKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNI-A--KPYCTYIG 76 (195)
T ss_pred eEEEEeeEEEC-CcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChh-h--hhhEEecc
Confidence 67899999994 455555 9999999999999999999999999999999999999999999987532 1 34589999
Q ss_pred CCCCCCCCCCHHHHHHHHHhcCC
Q psy7411 429 QYDLLFEELTVEDHLQFFAKGKE 451 (474)
Q Consensus 429 Q~~~L~~~LTV~E~L~~~~~lkg 451 (474)
|+..+++.+|++||+.+....++
T Consensus 77 ~~~~~~~~~tv~~~l~~~~~~~~ 99 (195)
T PRK13541 77 HNLGLKLEMTVFENLKFWSEIYN 99 (195)
T ss_pred CCcCCCccCCHHHHHHHHHHhcc
Confidence 99888888999999988665443
No 194
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=1e-17 Score=165.62 Aligned_cols=117 Identities=19% Similarity=0.371 Sum_probs=94.8
Q ss_pred ccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCC-----eeEEEECCeecCc---chH
Q psy7411 347 SGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPT-----SGTAYIDGHDIWY---EMG 418 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~Pt-----sG~i~i~G~dI~~---~~~ 418 (474)
..++++|+++.| +++.+++++||++++||+++|+|+||||||||+++|+|+.+|+ +|++.++|+++.. ...
T Consensus 6 ~~l~~~nl~~~~-~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~ 84 (261)
T PRK14258 6 PAIKVNNLSFYY-DTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLN 84 (261)
T ss_pred ceEEEeeEEEEe-CCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchH
Confidence 458999999999 4567999999999999999999999999999999999999986 8999999998742 234
Q ss_pred HhhcceEEEcCCCCCCCCCCHHHHHHHHHhcCCC-CHHHHHHHHHHHH
Q psy7411 419 KVRESLGLCPQYDLLFEELTVEDHLQFFAKGKEF-NGITYGRALLLMM 465 (474)
Q Consensus 419 ~ir~~IG~~~Q~~~L~~~LTV~E~L~~~~~lkg~-~~~~~~~~l~~~~ 465 (474)
.+++.++|++|+..+++ +|+.||+.+.....+. +..+..+++.+.+
T Consensus 85 ~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l 131 (261)
T PRK14258 85 RLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGWRPKLEIDDIVESAL 131 (261)
T ss_pred HhhccEEEEecCCccCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 56778999999988888 8999999886555443 3333333344333
No 195
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=7.3e-18 Score=163.49 Aligned_cols=94 Identities=27% Similarity=0.443 Sum_probs=82.5
Q ss_pred EEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEEEc
Q psy7411 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCP 428 (474)
Q Consensus 349 I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~~ 428 (474)
++++|+++.|+ .+. .++||++++||+++|+||||||||||+++|+|+.+|++|++.++|+++.... ..++.++|+|
T Consensus 2 l~~~~l~~~~~-~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~i~~~~ 77 (232)
T PRK10771 2 LKLTDITWLYH-HLP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTP-PSRRPVSMLF 77 (232)
T ss_pred eEEEEEEEEEC-Ccc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCC-hhhccEEEEe
Confidence 67999999994 333 3899999999999999999999999999999999999999999999875322 2356799999
Q ss_pred CCCCCCCCCCHHHHHHHH
Q psy7411 429 QYDLLFEELTVEDHLQFF 446 (474)
Q Consensus 429 Q~~~L~~~LTV~E~L~~~ 446 (474)
|++.+++.+|+.||+.+.
T Consensus 78 q~~~~~~~~tv~e~l~~~ 95 (232)
T PRK10771 78 QENNLFSHLTVAQNIGLG 95 (232)
T ss_pred cccccccCCcHHHHHhcc
Confidence 999999999999999864
No 196
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.75 E-value=5.7e-19 Score=167.22 Aligned_cols=120 Identities=28% Similarity=0.380 Sum_probs=105.2
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chHHhhcceEE
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMGKVRESLGL 426 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~~ir~~IG~ 426 (474)
+++++|++|.| +++.+++++|+++++|.+++++||||||||||+++++.|.++++|++.++|+++.. ..+++.+.+.+
T Consensus 1 MI~i~nv~K~y-~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSI 79 (252)
T COG4604 1 MITIENVSKSY-GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSI 79 (252)
T ss_pred CeeehhhhHhh-CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHH
Confidence 36899999999 67899999999999999999999999999999999999999999999999999974 45567778999
Q ss_pred EcCCCCCCCCCCHHHHHHHH--HhcCCCCHHHHHHHHHHHHhHh
Q psy7411 427 CPQYDLLFEELTVEDHLQFF--AKGKEFNGITYGRALLLMMSYV 468 (474)
Q Consensus 427 ~~Q~~~L~~~LTV~E~L~~~--~~lkg~~~~~~~~~l~~~~~~~ 468 (474)
.-|.+.....+||+|-+.|. ..-+|....+-++.+.+-+.|+
T Consensus 80 LkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl 123 (252)
T COG4604 80 LKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYL 123 (252)
T ss_pred HHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHh
Confidence 99999999999999999984 4456777777666666666664
No 197
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.75 E-value=6.1e-18 Score=157.85 Aligned_cols=94 Identities=27% Similarity=0.456 Sum_probs=82.5
Q ss_pred EEEEeeEEEEcCC-ceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEEE
Q psy7411 349 IQLRGLTKIYKTG-KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLC 427 (474)
Q Consensus 349 I~i~~Lsk~y~~~-~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~ 427 (474)
++++|+++.|++. +++++++||++++||+++++||||||||||+++|+|+.+|++|++.++|+++.......++.++|+
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~ 80 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVL 80 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEE
Confidence 4689999999532 369999999999999999999999999999999999999999999999998753333456789999
Q ss_pred cCCCCCCCCCCHHHHH
Q psy7411 428 PQYDLLFEELTVEDHL 443 (474)
Q Consensus 428 ~Q~~~L~~~LTV~E~L 443 (474)
+|++.+++ .|++||+
T Consensus 81 ~q~~~~~~-~tv~~~i 95 (178)
T cd03247 81 NQRPYLFD-TTLRNNL 95 (178)
T ss_pred ccCCeeec-ccHHHhh
Confidence 99988886 6999998
No 198
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.75 E-value=8.3e-18 Score=167.97 Aligned_cols=97 Identities=21% Similarity=0.292 Sum_probs=85.8
Q ss_pred EEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCC--------eeEEEECCeecCc-chHH
Q psy7411 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPT--------SGTAYIDGHDIWY-EMGK 419 (474)
Q Consensus 349 I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~Pt--------sG~i~i~G~dI~~-~~~~ 419 (474)
++++|+++.| +++.+++++||++.+||+++|+||||||||||+++|+|+.+|+ +|+|.++|+++.. ...+
T Consensus 2 l~~~nl~~~~-~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (272)
T PRK13547 2 LTADHLHVAR-RHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPR 80 (272)
T ss_pred eEEEEEEEEE-CCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHH
Confidence 6899999999 5578999999999999999999999999999999999999998 9999999998753 3345
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHH
Q psy7411 420 VRESLGLCPQYDLLFEELTVEDHLQFF 446 (474)
Q Consensus 420 ir~~IG~~~Q~~~L~~~LTV~E~L~~~ 446 (474)
.++.++|+||++.++..+|+.||+.+.
T Consensus 81 ~~~~~~~v~q~~~~~~~~tv~e~l~~~ 107 (272)
T PRK13547 81 LARLRAVLPQAAQPAFAFSAREIVLLG 107 (272)
T ss_pred HHhhcEEecccCCCCCCCcHHHHHhhc
Confidence 566789999998766668999999874
No 199
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.75 E-value=4.8e-18 Score=164.94 Aligned_cols=98 Identities=26% Similarity=0.532 Sum_probs=85.5
Q ss_pred EEEEeeEEEEcC-CceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chHHhhcceEE
Q psy7411 349 IQLRGLTKIYKT-GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMGKVRESLGL 426 (474)
Q Consensus 349 I~i~~Lsk~y~~-~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~~ir~~IG~ 426 (474)
++++|+++.|++ ++++++++||++++||+++|+||||||||||+++|+|+.+|++|++.++|+++.. .....++.+||
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 468999999953 3579999999999999999999999999999999999999999999999998753 33456778999
Q ss_pred EcCCCCCCCCCCHHHHHHHHH
Q psy7411 427 CPQYDLLFEELTVEDHLQFFA 447 (474)
Q Consensus 427 ~~Q~~~L~~~LTV~E~L~~~~ 447 (474)
+||++.+++ .|+.||+.+..
T Consensus 81 ~~q~~~~~~-~tv~~nl~~~~ 100 (237)
T cd03252 81 VLQENVLFN-RSIRDNIALAD 100 (237)
T ss_pred EcCCchhcc-chHHHHhhccC
Confidence 999988875 69999998743
No 200
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.75 E-value=5e-18 Score=162.90 Aligned_cols=97 Identities=33% Similarity=0.553 Sum_probs=85.4
Q ss_pred EEEEeeEEEEcCC-ceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chHHhhcceEE
Q psy7411 349 IQLRGLTKIYKTG-KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMGKVRESLGL 426 (474)
Q Consensus 349 I~i~~Lsk~y~~~-~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~~ir~~IG~ 426 (474)
++++|+++.|++. +.+++++||++++||+++|+||||||||||+++|+|+.+|++|++.++|+++.. .....++.++|
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (220)
T cd03245 3 IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGY 82 (220)
T ss_pred EEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEE
Confidence 6899999999532 579999999999999999999999999999999999999999999999998753 23345678999
Q ss_pred EcCCCCCCCCCCHHHHHHHH
Q psy7411 427 CPQYDLLFEELTVEDHLQFF 446 (474)
Q Consensus 427 ~~Q~~~L~~~LTV~E~L~~~ 446 (474)
++|++.+++ .|+.||+.+.
T Consensus 83 ~~q~~~~~~-~tv~e~l~~~ 101 (220)
T cd03245 83 VPQDVTLFY-GTLRDNITLG 101 (220)
T ss_pred eCCCCcccc-chHHHHhhcC
Confidence 999998887 5999999764
No 201
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.75 E-value=1.2e-17 Score=157.96 Aligned_cols=106 Identities=24% Similarity=0.319 Sum_probs=90.2
Q ss_pred cEEEEeeEEEEcC---CceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCC--CCCeeEEEECCeecCcchHHhhc
Q psy7411 348 GIQLRGLTKIYKT---GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLI--IPTSGTAYIDGHDIWYEMGKVRE 422 (474)
Q Consensus 348 ~I~i~~Lsk~y~~---~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~--~PtsG~i~i~G~dI~~~~~~ir~ 422 (474)
.++++++++.|++ ++++++++||++++||+++|+||||||||||+++|+|+. +|++|++.++|+++. .+.++
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~---~~~~~ 79 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD---KNFQR 79 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH---HHhhh
Confidence 4789999999953 267999999999999999999999999999999999986 489999999999875 45567
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHHhcCCCCHHH
Q psy7411 423 SLGLCPQYDLLFEELTVEDHLQFFAKGKEFNGIT 456 (474)
Q Consensus 423 ~IG~~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~ 456 (474)
.++|++|++.+++.+|++||+.+....+.++.-+
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~LSgGe 113 (192)
T cd03232 80 STGYVEQQDVHSPNLTVREALRFSALLRGLSVEQ 113 (192)
T ss_pred ceEEecccCccccCCcHHHHHHHHHHHhcCCHHH
Confidence 8999999999999999999998754433444433
No 202
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.75 E-value=4.7e-18 Score=163.17 Aligned_cols=97 Identities=26% Similarity=0.451 Sum_probs=85.9
Q ss_pred EEEEeeEEEEcC-CceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chHHhhcceEE
Q psy7411 349 IQLRGLTKIYKT-GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMGKVRESLGL 426 (474)
Q Consensus 349 I~i~~Lsk~y~~-~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~~ir~~IG~ 426 (474)
++++|+++.|++ .+.+++++||++++||+++|+||||||||||+++|+|+.+|++|++.++|.++.. ...+.++.++|
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (221)
T cd03244 3 IEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISI 82 (221)
T ss_pred EEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEE
Confidence 689999999953 3579999999999999999999999999999999999999999999999998753 34456778999
Q ss_pred EcCCCCCCCCCCHHHHHHHH
Q psy7411 427 CPQYDLLFEELTVEDHLQFF 446 (474)
Q Consensus 427 ~~Q~~~L~~~LTV~E~L~~~ 446 (474)
++|++.+++ .|++||+.++
T Consensus 83 ~~q~~~l~~-~tv~enl~~~ 101 (221)
T cd03244 83 IPQDPVLFS-GTIRSNLDPF 101 (221)
T ss_pred ECCCCcccc-chHHHHhCcC
Confidence 999988876 5999999754
No 203
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.75 E-value=1.5e-17 Score=164.76 Aligned_cols=106 Identities=18% Similarity=0.261 Sum_probs=89.5
Q ss_pred cccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCC-----CeeEEEECCeecC---c--
Q psy7411 346 ASGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIP-----TSGTAYIDGHDIW---Y-- 415 (474)
Q Consensus 346 ~~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~P-----tsG~i~i~G~dI~---~-- 415 (474)
...++++|+++.|+ ++.+++++||++++||+++|+|+||||||||+++|+|+.+| ++|++.++|.++. .
T Consensus 14 ~~~l~~~~l~~~~~-~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~ 92 (265)
T PRK14252 14 QQKSEVNKLNFYYG-GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEV 92 (265)
T ss_pred CceEEEEEEEEEEC-CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccccc
Confidence 34589999999994 56899999999999999999999999999999999999875 7999999998763 1
Q ss_pred chHHhhcceEEEcCCCCCCCCCCHHHHHHHHHhcCCCC
Q psy7411 416 EMGKVRESLGLCPQYDLLFEELTVEDHLQFFAKGKEFN 453 (474)
Q Consensus 416 ~~~~ir~~IG~~~Q~~~L~~~LTV~E~L~~~~~lkg~~ 453 (474)
.....++.+||++|++.+++. |++||+.+.....+.+
T Consensus 93 ~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~ 129 (265)
T PRK14252 93 DPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRGVK 129 (265)
T ss_pred CHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHcCCC
Confidence 223557789999999999886 9999998765544443
No 204
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.75 E-value=6.1e-18 Score=164.63 Aligned_cols=118 Identities=23% Similarity=0.321 Sum_probs=97.9
Q ss_pred cEEEEeeEEEEcCCc---eeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc--chHHhhc
Q psy7411 348 GIQLRGLTKIYKTGK---KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY--EMGKVRE 422 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~---~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~--~~~~ir~ 422 (474)
.++++||++.|++.+ ++++++||++.+||++||+|++|||||||.|+|+|+.+|++|+|.++|++... ..+..++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 578999999995433 49999999999999999999999999999999999999999999999987753 2234567
Q ss_pred ceEEEcCCC--CCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhH
Q psy7411 423 SLGLCPQYD--LLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSY 467 (474)
Q Consensus 423 ~IG~~~Q~~--~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~ 467 (474)
.+.+|||++ .|.|..||++.|.-....+|.++.+. +..+++.+
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~--~i~~~L~~ 127 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQ--RIAELLDQ 127 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHH--HHHHHHHH
Confidence 799999996 68999999999998888877655432 24444443
No 205
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.75 E-value=1.2e-17 Score=163.53 Aligned_cols=118 Identities=22% Similarity=0.345 Sum_probs=94.7
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCC-----CCeeEEEECCeecCc---chHH
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLII-----PTSGTAYIDGHDIWY---EMGK 419 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~-----PtsG~i~i~G~dI~~---~~~~ 419 (474)
.++++|+++.| +++.+++++||++.+||+++|+|+||+|||||+++|+|+.+ |++|+|.++|+++.. ...+
T Consensus 3 ~l~~~~v~~~~-~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~ 81 (250)
T PRK14266 3 RIEVENLNTYF-DDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVE 81 (250)
T ss_pred EEEEEeEEEEe-CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHH
Confidence 37899999999 45789999999999999999999999999999999999864 489999999998753 2345
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHHhcCCC-CHHHHHHHHHHHHhH
Q psy7411 420 VRESLGLCPQYDLLFEELTVEDHLQFFAKGKEF-NGITYGRALLLMMSY 467 (474)
Q Consensus 420 ir~~IG~~~Q~~~L~~~LTV~E~L~~~~~lkg~-~~~~~~~~l~~~~~~ 467 (474)
.++.++|+||++.+++. |+.||+.+.....+. .++...+++.+++..
T Consensus 82 ~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~ 129 (250)
T PRK14266 82 LRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHGEDDEDFIEERVEESLKA 129 (250)
T ss_pred HhhheEEEecCCccCcc-hHHHHHHhHHhhcCCCCHHHHHHHHHHHHHH
Confidence 67789999999998885 999999876544443 233344555554443
No 206
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.75 E-value=6.9e-18 Score=182.01 Aligned_cols=100 Identities=32% Similarity=0.507 Sum_probs=88.5
Q ss_pred ccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcc-hHHh-hcce
Q psy7411 347 SGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYE-MGKV-RESL 424 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~-~~~i-r~~I 424 (474)
+.++++|+++.| +++.+++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++... ..+. ++.+
T Consensus 10 ~~l~~~~l~~~~-~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 88 (510)
T PRK15439 10 PLLCARSISKQY-SGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGI 88 (510)
T ss_pred ceEEEEeEEEEe-CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCE
Confidence 358999999999 457899999999999999999999999999999999999999999999999988632 2232 3569
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHH
Q psy7411 425 GLCPQYDLLFEELTVEDHLQFFA 447 (474)
Q Consensus 425 G~~~Q~~~L~~~LTV~E~L~~~~ 447 (474)
||++|++.+++.+||+||+.+..
T Consensus 89 ~~v~q~~~~~~~~tv~e~l~~~~ 111 (510)
T PRK15439 89 YLVPQEPLLFPNLSVKENILFGL 111 (510)
T ss_pred EEEeccCccCCCCcHHHHhhccc
Confidence 99999999999999999998753
No 207
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.75 E-value=1.2e-17 Score=163.82 Aligned_cols=101 Identities=24% Similarity=0.409 Sum_probs=86.3
Q ss_pred EEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCC-----CCeeEEEECCeecCc---chHHh
Q psy7411 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLII-----PTSGTAYIDGHDIWY---EMGKV 420 (474)
Q Consensus 349 I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~-----PtsG~i~i~G~dI~~---~~~~i 420 (474)
-+++|+++.| +++.+++++||++.+||+++|+|+||||||||+++|+|+.+ |++|+|.++|+++.. ....+
T Consensus 6 ~~~~~l~~~~-~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 84 (251)
T PRK14244 6 ASVKNLNLWY-GSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLL 84 (251)
T ss_pred EEeeeEEEEE-CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHH
Confidence 3688999999 46789999999999999999999999999999999999986 579999999998743 12245
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHHhcCC
Q psy7411 421 RESLGLCPQYDLLFEELTVEDHLQFFAKGKE 451 (474)
Q Consensus 421 r~~IG~~~Q~~~L~~~LTV~E~L~~~~~lkg 451 (474)
|+.+||+||++.+++. |+.||+.+....++
T Consensus 85 ~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~ 114 (251)
T PRK14244 85 RAKVGMVFQKPNPFPK-SIYDNVAYGPKLHG 114 (251)
T ss_pred hhhEEEEecCcccccC-CHHHHHHHHHHhcC
Confidence 7789999999988886 99999987644444
No 208
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.75 E-value=8.2e-18 Score=181.18 Aligned_cols=119 Identities=28% Similarity=0.328 Sum_probs=96.4
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcc-hH-HhhcceE
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYE-MG-KVRESLG 425 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~-~~-~ir~~IG 425 (474)
.++++|+++.| +++.+++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++... .. ..++.+|
T Consensus 5 ~l~~~~l~~~~-~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~ 83 (510)
T PRK09700 5 YISMAGIGKSF-GPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIG 83 (510)
T ss_pred eEEEeeeEEEc-CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeE
Confidence 58999999999 457899999999999999999999999999999999999999999999999998642 22 2345799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHh----cCCC---CHHHHHHHHHHHHhH
Q psy7411 426 LCPQYDLLFEELTVEDHLQFFAK----GKEF---NGITYGRALLLMMSY 467 (474)
Q Consensus 426 ~~~Q~~~L~~~LTV~E~L~~~~~----lkg~---~~~~~~~~l~~~~~~ 467 (474)
|++|++.+++.+||+||+.+... ..+. +.++..++++++++.
T Consensus 84 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 132 (510)
T PRK09700 84 IIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLR 132 (510)
T ss_pred EEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHH
Confidence 99999999999999999986432 1232 234445555555544
No 209
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.75 E-value=1.1e-17 Score=165.78 Aligned_cols=102 Identities=26% Similarity=0.380 Sum_probs=88.1
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCC-----CCeeEEEECCeecCc---chHH
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLII-----PTSGTAYIDGHDIWY---EMGK 419 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~-----PtsG~i~i~G~dI~~---~~~~ 419 (474)
.++++|+++.| +++++++++||++++||+++|+|+||||||||+++|+|+.+ |++|+|.++|+++.. ...+
T Consensus 10 ~l~i~~v~~~~-~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 88 (264)
T PRK14243 10 VLRTENLNVYY-GSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVE 88 (264)
T ss_pred EEEEeeeEEEE-CCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHH
Confidence 58999999999 45689999999999999999999999999999999999976 489999999998742 2345
Q ss_pred hhcceEEEcCCCCCCCCCCHHHHHHHHHhcCC
Q psy7411 420 VRESLGLCPQYDLLFEELTVEDHLQFFAKGKE 451 (474)
Q Consensus 420 ir~~IG~~~Q~~~L~~~LTV~E~L~~~~~lkg 451 (474)
.++.+||++|++.+++. |+.||+.+.....+
T Consensus 89 ~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~ 119 (264)
T PRK14243 89 VRRRIGMVFQKPNPFPK-SIYDNIAYGARING 119 (264)
T ss_pred HhhhEEEEccCCccccc-cHHHHHHhhhhhcC
Confidence 67789999999888874 99999988654444
No 210
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.75 E-value=1.5e-17 Score=165.32 Aligned_cols=120 Identities=20% Similarity=0.249 Sum_probs=96.4
Q ss_pred cEEEEeeEEEEcC--------CceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcc---
Q psy7411 348 GIQLRGLTKIYKT--------GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYE--- 416 (474)
Q Consensus 348 ~I~i~~Lsk~y~~--------~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~--- 416 (474)
.++++|+++.|++ ++.+++++||++.+||+++|+||||||||||+++|+|+.+|++|++.++|+++...
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 4789999999952 46899999999999999999999999999999999999999999999999987531
Q ss_pred -hHHhhcceEEEcCCC--CCCCCCCHHHHHHHHHh-cCCCCHHHHHHHHHHHHhH
Q psy7411 417 -MGKVRESLGLCPQYD--LLFEELTVEDHLQFFAK-GKEFNGITYGRALLLMMSY 467 (474)
Q Consensus 417 -~~~ir~~IG~~~Q~~--~L~~~LTV~E~L~~~~~-lkg~~~~~~~~~l~~~~~~ 467 (474)
....++.+||++|++ .+++..|+.|++.+... ..+...++..+++++++..
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 137 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRA 137 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHH
Confidence 234567899999997 46678899999876433 2344444444556666654
No 211
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.75 E-value=1e-17 Score=160.42 Aligned_cols=93 Identities=28% Similarity=0.450 Sum_probs=81.0
Q ss_pred EeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-----chHHhhcceEE
Q psy7411 352 RGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-----EMGKVRESLGL 426 (474)
Q Consensus 352 ~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-----~~~~ir~~IG~ 426 (474)
.+|+|.|+ ++.+ ++||++++ |+++|+||||||||||+++|+|+++|++|++.++|.++.. .....++.++|
T Consensus 4 ~~l~~~~~-~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~ 79 (214)
T cd03297 4 VDIEKRLP-DFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGL 79 (214)
T ss_pred eeeeEecC-Ceee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEE
Confidence 38999994 4544 99999999 9999999999999999999999999999999999998752 12345678999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHh
Q psy7411 427 CPQYDLLFEELTVEDHLQFFAK 448 (474)
Q Consensus 427 ~~Q~~~L~~~LTV~E~L~~~~~ 448 (474)
++|++.+++.+|+.||+.+...
T Consensus 80 ~~q~~~~~~~~t~~~~l~~~~~ 101 (214)
T cd03297 80 VFQQYALFPHLNVRENLAFGLK 101 (214)
T ss_pred EecCCccCCCCCHHHHHHHHHh
Confidence 9999999999999999987643
No 212
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.75 E-value=6.9e-18 Score=160.77 Aligned_cols=98 Identities=29% Similarity=0.434 Sum_probs=86.4
Q ss_pred cEEEEeeEEEEcCC-ceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chHHhhcceE
Q psy7411 348 GIQLRGLTKIYKTG-KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMGKVRESLG 425 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~-~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~~ir~~IG 425 (474)
.++++++++.|++. +.+++++||++++||+++|+|+||||||||+++|+|+.+|++|++.++|+++.. ...+.++.++
T Consensus 6 ~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 85 (207)
T cd03369 6 EIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLT 85 (207)
T ss_pred eEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEE
Confidence 47899999999532 479999999999999999999999999999999999999999999999998753 3345677899
Q ss_pred EEcCCCCCCCCCCHHHHHHHH
Q psy7411 426 LCPQYDLLFEELTVEDHLQFF 446 (474)
Q Consensus 426 ~~~Q~~~L~~~LTV~E~L~~~ 446 (474)
||+|++.+++. |++||+.++
T Consensus 86 ~v~q~~~~~~~-tv~~~l~~~ 105 (207)
T cd03369 86 IIPQDPTLFSG-TIRSNLDPF 105 (207)
T ss_pred EEecCCcccCc-cHHHHhccc
Confidence 99999988874 999999764
No 213
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.75 E-value=6.6e-18 Score=184.82 Aligned_cols=111 Identities=22% Similarity=0.343 Sum_probs=98.4
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chHHhhcceEE
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMGKVRESLGL 426 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~~ir~~IG~ 426 (474)
.++++|++..|++++++++|+||++++||.++++|+||||||||+++|+|+++|++|+|.++|.++.. +.+.+|++++|
T Consensus 340 ~i~~~~v~f~y~~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~ 419 (592)
T PRK10790 340 RIDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAM 419 (592)
T ss_pred eEEEEEEEEEeCCCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEE
Confidence 58999999999655679999999999999999999999999999999999999999999999999974 56678999999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHH
Q psy7411 427 CPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALL 462 (474)
Q Consensus 427 ~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~ 462 (474)
+||++.+|++ |++||+.+.. ..+.+++.++++
T Consensus 420 v~Q~~~lF~~-Ti~~NI~~~~---~~~d~~i~~a~~ 451 (592)
T PRK10790 420 VQQDPVVLAD-TFLANVTLGR---DISEEQVWQALE 451 (592)
T ss_pred EccCCccccc-hHHHHHHhCC---CCCHHHHHHHHH
Confidence 9999999997 9999999864 345666665544
No 214
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.75 E-value=3.1e-18 Score=171.73 Aligned_cols=121 Identities=27% Similarity=0.387 Sum_probs=106.2
Q ss_pred cEEEEeeEEEEc-----------------------CCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCee
Q psy7411 348 GIQLRGLTKIYK-----------------------TGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSG 404 (474)
Q Consensus 348 ~I~i~~Lsk~y~-----------------------~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG 404 (474)
.++++|+.|.|+ +....++++||++++|||++++|-+|||||||+|++.+|.+||+|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 478888888885 113468999999999999999999999999999999999999999
Q ss_pred EEEECCeecCc----chHHhh-cceEEEcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhHh
Q psy7411 405 TAYIDGHDIWY----EMGKVR-ESLGLCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSYV 468 (474)
Q Consensus 405 ~i~i~G~dI~~----~~~~ir-~~IG~~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~~ 468 (474)
+|.++|+|+.+ ..+++| +++++|+|++.|+|+.||.||+.|...++|.++++-+++..+-+..|
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~V 152 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELV 152 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHc
Confidence 99999999864 345555 45999999999999999999999999999999999888877776654
No 215
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.74 E-value=1.2e-17 Score=172.78 Aligned_cols=110 Identities=18% Similarity=0.342 Sum_probs=88.2
Q ss_pred eeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcc-----hHHhhcceEEE
Q psy7411 353 GLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYE-----MGKVRESLGLC 427 (474)
Q Consensus 353 ~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~-----~~~ir~~IG~~ 427 (474)
|++|.| +++. + ++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++... ....++.+||+
T Consensus 4 ~l~~~~-~~~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v 80 (354)
T TIGR02142 4 RFSKRL-GDFS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYV 80 (354)
T ss_pred EEEEEE-CCEE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEE
Confidence 789999 4444 4 89999999999999999999999999999999999999999999988531 22456779999
Q ss_pred cCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhH
Q psy7411 428 PQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSY 467 (474)
Q Consensus 428 ~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~ 467 (474)
+|++.+++.+||+||+.+..... ..++..+++++++..
T Consensus 81 ~q~~~l~~~~tv~enl~~~~~~~--~~~~~~~~~~~~l~~ 118 (354)
T TIGR02142 81 FQEARLFPHLSVRGNLRYGMKRA--RPSERRISFERVIEL 118 (354)
T ss_pred ecCCccCCCCcHHHHHHHHhhcc--ChhHHHHHHHHHHHH
Confidence 99999999999999998864432 223333344554443
No 216
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.74 E-value=8e-18 Score=183.92 Aligned_cols=112 Identities=23% Similarity=0.307 Sum_probs=97.1
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chHHhhcceEE
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMGKVRESLGL 426 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~~ir~~IG~ 426 (474)
.++++|++..|.+++++++|+||++++||.++++||||||||||+++|+|++ |++|+|.++|.++.. +.+++|++++|
T Consensus 349 ~i~~~~vsf~~~~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~ 427 (588)
T PRK11174 349 TIEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSW 427 (588)
T ss_pred eEEEEeeEEeccCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEE
Confidence 4899999975545578999999999999999999999999999999999999 999999999999974 56678999999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy7411 427 CPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLL 463 (474)
Q Consensus 427 ~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~ 463 (474)
|||++.+|+. |++||+.+.. ...+++++.++++.
T Consensus 428 v~Q~~~LF~~-TI~eNI~~g~--~~~~~eei~~al~~ 461 (588)
T PRK11174 428 VGQNPQLPHG-TLRDNVLLGN--PDASDEQLQQALEN 461 (588)
T ss_pred ecCCCcCCCc-CHHHHhhcCC--CCCCHHHHHHHHHH
Confidence 9999999987 9999999853 33566676666543
No 217
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=2.2e-17 Score=163.58 Aligned_cols=117 Identities=21% Similarity=0.249 Sum_probs=94.1
Q ss_pred ccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCC-----CeeEEEECCeecCc---chH
Q psy7411 347 SGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIP-----TSGTAYIDGHDIWY---EMG 418 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~P-----tsG~i~i~G~dI~~---~~~ 418 (474)
..+.++++++.| +++.+++++||++++||+++|+|+||||||||+++|+|+.+| ++|+|.++|+++.. ...
T Consensus 7 ~~~~~~~~~~~~-~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 85 (261)
T PRK14263 7 IVMDCKLDKIFY-GNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPV 85 (261)
T ss_pred ceEEEEeEEEEe-CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchH
Confidence 357889999999 567899999999999999999999999999999999999986 79999999998753 223
Q ss_pred HhhcceEEEcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q psy7411 419 KVRESLGLCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMS 466 (474)
Q Consensus 419 ~ir~~IG~~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~ 466 (474)
.+++.++|++|++.++ .+|+.||+.+.....+.. .+..+.+++++.
T Consensus 86 ~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~~~-~~~~~~~~~~l~ 131 (261)
T PRK14263 86 VVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNRYK-GDLGDRVKHALQ 131 (261)
T ss_pred hhhhceEEEecCCccc-cccHHHHHHHHHhhcCch-HHHHHHHHHHHH
Confidence 4567799999999888 589999998875544432 223334444443
No 218
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=1.8e-17 Score=169.69 Aligned_cols=121 Identities=19% Similarity=0.176 Sum_probs=96.5
Q ss_pred cEEEEeeEEEEcCC---ceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCC----CCeeEEEECCeecCcc----
Q psy7411 348 GIQLRGLTKIYKTG---KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLII----PTSGTAYIDGHDIWYE---- 416 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~---~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~----PtsG~i~i~G~dI~~~---- 416 (474)
.++++||++.|++. .++|+|+||++++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++...
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 47899999999532 469999999999999999999999999999999999997 4899999999998632
Q ss_pred hHHhh-cceEEEcCCC--CCCCCCCHHHHHHHHHhc-CCCCHHHHHHHHHHHHhHh
Q psy7411 417 MGKVR-ESLGLCPQYD--LLFEELTVEDHLQFFAKG-KEFNGITYGRALLLMMSYV 468 (474)
Q Consensus 417 ~~~ir-~~IG~~~Q~~--~L~~~LTV~E~L~~~~~l-kg~~~~~~~~~l~~~~~~~ 468 (474)
..+.| +.++|+||++ .+++.+|+.+++...... ++.+.++..+++.+++..+
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~ 138 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQV 138 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHC
Confidence 22222 4699999997 588999999998765443 3455566566666666543
No 219
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.74 E-value=4.4e-18 Score=190.03 Aligned_cols=113 Identities=22% Similarity=0.355 Sum_probs=98.6
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chHHhhcceEE
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMGKVRESLGL 426 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~~ir~~IG~ 426 (474)
.++++|++++|++++++++|+||++++||.++++|+||||||||+++|+|+++|++|+|.++|.++.. +.+++|+++||
T Consensus 473 ~I~~~~vsf~y~~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~ 552 (708)
T TIGR01193 473 DIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINY 552 (708)
T ss_pred cEEEEEEEEEcCCCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEE
Confidence 58999999999645689999999999999999999999999999999999999999999999999874 56678999999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHH
Q psy7411 427 CPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALL 462 (474)
Q Consensus 427 ~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~ 462 (474)
|||++.+|+. |++||+.+... ...+.+++.++++
T Consensus 553 v~Q~~~lf~g-TI~eNi~l~~~-~~~~~~~i~~a~~ 586 (708)
T TIGR01193 553 LPQEPYIFSG-SILENLLLGAK-ENVSQDEIWAACE 586 (708)
T ss_pred EecCceehhH-HHHHHHhccCC-CCCCHHHHHHHHH
Confidence 9999999987 99999998632 2345566555544
No 220
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.74 E-value=1.3e-17 Score=172.45 Aligned_cols=94 Identities=21% Similarity=0.421 Sum_probs=82.3
Q ss_pred EEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcc-----hHHhhcc
Q psy7411 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYE-----MGKVRES 423 (474)
Q Consensus 349 I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~-----~~~ir~~ 423 (474)
+++ |++|.|+ ++. + ++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++... ....++.
T Consensus 2 l~~-~l~k~~~-~~~-~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~ 77 (352)
T PRK11144 2 LEL-NFKQQLG-DLC-L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRR 77 (352)
T ss_pred eEE-EEEEEeC-CEE-E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCC
Confidence 566 8999994 443 3 89999999999999999999999999999999999999999999987531 2345678
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHH
Q psy7411 424 LGLCPQYDLLFEELTVEDHLQFF 446 (474)
Q Consensus 424 IG~~~Q~~~L~~~LTV~E~L~~~ 446 (474)
+||++|+..+++.+||+||+.+.
T Consensus 78 i~~v~q~~~l~~~~tv~enl~~~ 100 (352)
T PRK11144 78 IGYVFQDARLFPHYKVRGNLRYG 100 (352)
T ss_pred EEEEcCCcccCCCCcHHHHHHhh
Confidence 99999999999999999999875
No 221
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.74 E-value=1e-17 Score=162.36 Aligned_cols=98 Identities=26% Similarity=0.502 Sum_probs=86.2
Q ss_pred EEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chHHhhcceEEE
Q psy7411 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMGKVRESLGLC 427 (474)
Q Consensus 349 I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~~ir~~IG~~ 427 (474)
++++|+++.|++++.+++++||++++||+++|+||||||||||+++|+|+.+|++|++.++|+++.. .....++.+||+
T Consensus 1 l~~~~l~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~ 80 (236)
T cd03253 1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVV 80 (236)
T ss_pred CEEEEEEEEeCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEE
Confidence 3689999999534679999999999999999999999999999999999999999999999998863 344566779999
Q ss_pred cCCCCCCCCCCHHHHHHHHH
Q psy7411 428 PQYDLLFEELTVEDHLQFFA 447 (474)
Q Consensus 428 ~Q~~~L~~~LTV~E~L~~~~ 447 (474)
+|+..+++ .|+.||+.+..
T Consensus 81 ~q~~~~~~-~tv~~nl~~~~ 99 (236)
T cd03253 81 PQDTVLFN-DTIGYNIRYGR 99 (236)
T ss_pred CCCChhhc-chHHHHHhhcC
Confidence 99998886 69999998753
No 222
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=2.4e-17 Score=164.49 Aligned_cols=103 Identities=20% Similarity=0.352 Sum_probs=88.2
Q ss_pred ccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCC-----CeeEEEECCeecCc---chH
Q psy7411 347 SGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIP-----TSGTAYIDGHDIWY---EMG 418 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~P-----tsG~i~i~G~dI~~---~~~ 418 (474)
..++++|+++.| +++.+++++||++++||+++|+||||||||||+++|+|+.+| ++|++.++|+++.. ...
T Consensus 19 ~~l~~~nl~~~~-~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~ 97 (274)
T PRK14265 19 SVFEVEGVKVFY-GGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSV 97 (274)
T ss_pred ceEEEeeEEEEe-CCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhH
Confidence 468999999999 456899999999999999999999999999999999999863 69999999998752 223
Q ss_pred HhhcceEEEcCCCCCCCCCCHHHHHHHHHhcCC
Q psy7411 419 KVRESLGLCPQYDLLFEELTVEDHLQFFAKGKE 451 (474)
Q Consensus 419 ~ir~~IG~~~Q~~~L~~~LTV~E~L~~~~~lkg 451 (474)
..++.++|++|++.+++. |+.||+.+....++
T Consensus 98 ~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~ 129 (274)
T PRK14265 98 KLRRQVGMVFQRPNPFPK-SIYENIAFAPRANG 129 (274)
T ss_pred HHhhcEEEEccCCccccc-cHHHHHHhHHHhcC
Confidence 457789999999988875 99999987654443
No 223
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.74 E-value=1.4e-17 Score=154.64 Aligned_cols=94 Identities=28% Similarity=0.522 Sum_probs=82.4
Q ss_pred EEEEeeEEEEcCC-ceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chHHhhcceEE
Q psy7411 349 IQLRGLTKIYKTG-KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMGKVRESLGL 426 (474)
Q Consensus 349 I~i~~Lsk~y~~~-~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~~ir~~IG~ 426 (474)
++++|+++.|++. ..+++++||++++||+++|+||||||||||+++|+|+.+|++|++.++|+++.. .....++.++|
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAY 80 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEE
Confidence 3689999999532 279999999999999999999999999999999999999999999999998753 23445677999
Q ss_pred EcCCCCCCCCCCHHHHH
Q psy7411 427 CPQYDLLFEELTVEDHL 443 (474)
Q Consensus 427 ~~Q~~~L~~~LTV~E~L 443 (474)
++|++.+++ .|+.||+
T Consensus 81 ~~~~~~~~~-~t~~e~l 96 (171)
T cd03228 81 VPQDPFLFS-GTIRENI 96 (171)
T ss_pred EcCCchhcc-chHHHHh
Confidence 999998886 5999997
No 224
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.74 E-value=2.4e-17 Score=169.08 Aligned_cols=121 Identities=21% Similarity=0.284 Sum_probs=98.0
Q ss_pred ccEEEEeeEEEEc---CCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCC---eeEEEECCeecCcc----
Q psy7411 347 SGIQLRGLTKIYK---TGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPT---SGTAYIDGHDIWYE---- 416 (474)
Q Consensus 347 ~~I~i~~Lsk~y~---~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~Pt---sG~i~i~G~dI~~~---- 416 (474)
..++++||++.|+ +...+|+++||++++||+++|+|+||||||||+++|+|+.+|+ +|+|.++|+++...
T Consensus 11 ~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~ 90 (330)
T PRK09473 11 ALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKE 90 (330)
T ss_pred ceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHH
Confidence 4689999999994 2357999999999999999999999999999999999999996 99999999998631
Q ss_pred hHHhh-cceEEEcCCC--CCCCCCCHHHHHHHHHhcC-CCCHHHHHHHHHHHHhH
Q psy7411 417 MGKVR-ESLGLCPQYD--LLFEELTVEDHLQFFAKGK-EFNGITYGRALLLMMSY 467 (474)
Q Consensus 417 ~~~ir-~~IG~~~Q~~--~L~~~LTV~E~L~~~~~lk-g~~~~~~~~~l~~~~~~ 467 (474)
..+.| +.++|+||++ .+++.+|+.+++......+ +.+.++..+++.+++..
T Consensus 91 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~ 145 (330)
T PRK09473 91 LNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDA 145 (330)
T ss_pred HHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 22334 4799999997 6889999999997655443 45666555555655554
No 225
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.74 E-value=1.7e-17 Score=154.25 Aligned_cols=94 Identities=26% Similarity=0.513 Sum_probs=83.0
Q ss_pred EEEEeeEEEEcCC-ceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chHHhhcceEE
Q psy7411 349 IQLRGLTKIYKTG-KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMGKVRESLGL 426 (474)
Q Consensus 349 I~i~~Lsk~y~~~-~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~~ir~~IG~ 426 (474)
++++|+++.|++. +.+++++|+++++||+++|+||||+|||||+++|+|+.+|++|++.++|+++.. ...+.++.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 3689999999532 469999999999999999999999999999999999999999999999998853 33456778999
Q ss_pred EcCCCCCCCCCCHHHHH
Q psy7411 427 CPQYDLLFEELTVEDHL 443 (474)
Q Consensus 427 ~~Q~~~L~~~LTV~E~L 443 (474)
++|++.+++. |++||+
T Consensus 81 ~~q~~~~~~~-tv~~~l 96 (173)
T cd03246 81 LPQDDELFSG-SIAENI 96 (173)
T ss_pred ECCCCccccC-cHHHHC
Confidence 9999988875 999997
No 226
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.74 E-value=2.1e-17 Score=182.46 Aligned_cols=122 Identities=22% Similarity=0.281 Sum_probs=99.9
Q ss_pred ccEEEEeeEEEEcC----------CceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcc
Q psy7411 347 SGIQLRGLTKIYKT----------GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYE 416 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~----------~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~ 416 (474)
..++++||++.|+. .+.+++++||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|+++...
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~ 391 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTL 391 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcC
Confidence 46899999999941 24799999999999999999999999999999999999999999999999988532
Q ss_pred ----hHHhhcceEEEcCCC--CCCCCCCHHHHHHHHHhcCCC-CHHHHHHHHHHHHhHh
Q psy7411 417 ----MGKVRESLGLCPQYD--LLFEELTVEDHLQFFAKGKEF-NGITYGRALLLMMSYV 468 (474)
Q Consensus 417 ----~~~ir~~IG~~~Q~~--~L~~~LTV~E~L~~~~~lkg~-~~~~~~~~l~~~~~~~ 468 (474)
....|+.+||+||++ .+++.+||.||+.+....++. +.++..+++.+++..+
T Consensus 392 ~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~ 450 (623)
T PRK10261 392 SPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERV 450 (623)
T ss_pred CHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHc
Confidence 223567899999996 589999999999886555554 3444556666666554
No 227
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.74 E-value=2.5e-17 Score=162.39 Aligned_cols=98 Identities=22% Similarity=0.421 Sum_probs=84.4
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCee-----cCcc-hHH--
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHD-----IWYE-MGK-- 419 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~d-----I~~~-~~~-- 419 (474)
.++++|+++.|+ ++.+++++||++++||+++|+|+||||||||+++|+|+.+|++|+|.++|++ +... ..+
T Consensus 6 ~l~~~~l~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~ 84 (258)
T PRK11701 6 LLSVRGLTKLYG-PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERR 84 (258)
T ss_pred eEEEeeeEEEcC-CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHH
Confidence 589999999994 5689999999999999999999999999999999999999999999999988 6431 111
Q ss_pred --hhcceEEEcCCC--CCCCCCCHHHHHHHH
Q psy7411 420 --VRESLGLCPQYD--LLFEELTVEDHLQFF 446 (474)
Q Consensus 420 --ir~~IG~~~Q~~--~L~~~LTV~E~L~~~ 446 (474)
.++.+||++|++ .+++.+|+.||+.+.
T Consensus 85 ~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~ 115 (258)
T PRK11701 85 RLLRTEWGFVHQHPRDGLRMQVSAGGNIGER 115 (258)
T ss_pred HHhhcceEEEeeCcccccCccccHHHHHHHH
Confidence 245699999996 467778999998764
No 228
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.74 E-value=1.1e-17 Score=180.68 Aligned_cols=113 Identities=24% Similarity=0.431 Sum_probs=97.2
Q ss_pred cEEEEeeEEEEcCC-ceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chHHhhcceE
Q psy7411 348 GIQLRGLTKIYKTG-KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMGKVRESLG 425 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~-~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~~ir~~IG 425 (474)
.++++|++++|+++ +++++++||++++||.++++||||||||||+++|+|+++|++|+|.++|.++.. +.+++|+++|
T Consensus 320 ~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~ 399 (529)
T TIGR02857 320 SLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIA 399 (529)
T ss_pred eEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheE
Confidence 58999999999643 479999999999999999999999999999999999999999999999999874 4567889999
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy7411 426 LCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLL 463 (474)
Q Consensus 426 ~~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~ 463 (474)
||+|++.+|+. |++||+.+... ..+++++.++++.
T Consensus 400 ~v~Q~~~lf~~-ti~~Ni~~~~~--~~~~~~i~~a~~~ 434 (529)
T TIGR02857 400 WVPQHPFLFAG-TIAENIRLARP--DASDAEIRRALER 434 (529)
T ss_pred EEcCCCcccCc-CHHHHHhccCC--CCCHHHHHHHHHH
Confidence 99999999976 99999988532 2345555555543
No 229
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.74 E-value=2.2e-17 Score=177.32 Aligned_cols=118 Identities=24% Similarity=0.315 Sum_probs=95.8
Q ss_pred EEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCC--CeeEEEECCeecCcc-hH-Hhhcce
Q psy7411 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIP--TSGTAYIDGHDIWYE-MG-KVRESL 424 (474)
Q Consensus 349 I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~P--tsG~i~i~G~dI~~~-~~-~ir~~I 424 (474)
++++|+++.| +++++++++||++++||+++|+||||||||||+++|+|+.+| ++|+|.++|+++... .. ..++.+
T Consensus 2 l~i~~l~~~~-~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (500)
T TIGR02633 2 LEMKGIVKTF-GGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGI 80 (500)
T ss_pred EEEEeEEEEe-CCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCE
Confidence 6899999999 457899999999999999999999999999999999999987 799999999988642 22 235679
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHhcC--C--CCHHHHHHHHHHHHhH
Q psy7411 425 GLCPQYDLLFEELTVEDHLQFFAKGK--E--FNGITYGRALLLMMSY 467 (474)
Q Consensus 425 G~~~Q~~~L~~~LTV~E~L~~~~~lk--g--~~~~~~~~~l~~~~~~ 467 (474)
||+||++.+++.+|+.||+.+..... + ...++..+++++++..
T Consensus 81 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 127 (500)
T TIGR02633 81 VIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRE 127 (500)
T ss_pred EEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHH
Confidence 99999999999999999998754332 1 3344444555555544
No 230
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.73 E-value=8.1e-18 Score=187.87 Aligned_cols=114 Identities=28% Similarity=0.357 Sum_probs=98.7
Q ss_pred ccEEEEeeEEEEcC-CceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chHHhhcce
Q psy7411 347 SGIQLRGLTKIYKT-GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMGKVRESL 424 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~-~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~~ir~~I 424 (474)
..++++|++++|++ ++++++|+||++++||.++++|+||||||||+++|+|+++|++|+|.++|.++.. +.+++|+++
T Consensus 476 ~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i 555 (710)
T TIGR03796 476 GYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSV 555 (710)
T ss_pred CeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhhe
Confidence 35899999999964 3679999999999999999999999999999999999999999999999999974 566789999
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy7411 425 GLCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLL 463 (474)
Q Consensus 425 G~~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~ 463 (474)
|||||++.+|+. |++||+.+.. ...+.+++.++++.
T Consensus 556 ~~v~Q~~~lf~g-Ti~eNi~l~~--~~~~~~~i~~al~~ 591 (710)
T TIGR03796 556 AMVDQDIFLFEG-TVRDNLTLWD--PTIPDADLVRACKD 591 (710)
T ss_pred eEEecCChhhhc-cHHHHhhCCC--CCCCHHHHHHHHHH
Confidence 999999999976 9999998752 23456666665543
No 231
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.73 E-value=8.1e-18 Score=163.45 Aligned_cols=98 Identities=29% Similarity=0.499 Sum_probs=85.0
Q ss_pred EEEEeeEEEEcC--CceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chHHhhcceE
Q psy7411 349 IQLRGLTKIYKT--GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMGKVRESLG 425 (474)
Q Consensus 349 I~i~~Lsk~y~~--~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~~ir~~IG 425 (474)
++++|+++.|++ ++++++++||++++||+++|+|+||||||||+++|+|+.+|++|++.++|.++.. ...+.++.++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 368999999953 2469999999999999999999999999999999999999999999999998753 2334566799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHH
Q psy7411 426 LCPQYDLLFEELTVEDHLQFFA 447 (474)
Q Consensus 426 ~~~Q~~~L~~~LTV~E~L~~~~ 447 (474)
|++|++.+++ .|++||+.+..
T Consensus 81 ~~~q~~~~~~-~tv~e~l~~~~ 101 (238)
T cd03249 81 LVSQEPVLFD-GTIAENIRYGK 101 (238)
T ss_pred EECCchhhhh-hhHHHHhhccC
Confidence 9999988886 59999998753
No 232
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.73 E-value=1.7e-17 Score=159.36 Aligned_cols=97 Identities=21% Similarity=0.297 Sum_probs=84.1
Q ss_pred EEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcc-----hHHhhcce
Q psy7411 350 QLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYE-----MGKVRESL 424 (474)
Q Consensus 350 ~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~-----~~~ir~~I 424 (474)
.+.|+.+.|++.+.+++++||++++||+++|+||||||||||+++|+|+.+|++|++.++|+++... ....|+.+
T Consensus 2 ~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 81 (218)
T cd03290 2 QVTNGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSV 81 (218)
T ss_pred eeeeeEEecCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceE
Confidence 5788999996556799999999999999999999999999999999999999999999999877531 12345679
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHH
Q psy7411 425 GLCPQYDLLFEELTVEDHLQFFA 447 (474)
Q Consensus 425 G~~~Q~~~L~~~LTV~E~L~~~~ 447 (474)
+|++|++.++ +.|++||+.+..
T Consensus 82 ~~~~q~~~~~-~~t~~~nl~~~~ 103 (218)
T cd03290 82 AYAAQKPWLL-NATVEENITFGS 103 (218)
T ss_pred EEEcCCCccc-cccHHHHHhhcC
Confidence 9999999888 569999998753
No 233
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.73 E-value=1.6e-17 Score=160.15 Aligned_cols=100 Identities=23% Similarity=0.439 Sum_probs=87.0
Q ss_pred cccEEEEeeEEEEcC--CceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chHHhhc
Q psy7411 346 ASGIQLRGLTKIYKT--GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMGKVRE 422 (474)
Q Consensus 346 ~~~I~i~~Lsk~y~~--~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~~ir~ 422 (474)
...++++++++.|++ ++.+++++||++++||+++|+||||||||||+++|+|+.+|++|++.++|+++.. .....++
T Consensus 9 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 88 (226)
T cd03248 9 KGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHS 88 (226)
T ss_pred CceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHh
Confidence 346899999999953 2469999999999999999999999999999999999999999999999988753 2334567
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHH
Q psy7411 423 SLGLCPQYDLLFEELTVEDHLQFF 446 (474)
Q Consensus 423 ~IG~~~Q~~~L~~~LTV~E~L~~~ 446 (474)
.++|++|++.+++ .|++||+.+.
T Consensus 89 ~i~~~~q~~~l~~-~tv~~nl~~~ 111 (226)
T cd03248 89 KVSLVGQEPVLFA-RSLQDNIAYG 111 (226)
T ss_pred hEEEEecccHHHh-hhHHHHhccc
Confidence 7999999998886 5999999764
No 234
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.73 E-value=2.2e-17 Score=178.34 Aligned_cols=119 Identities=25% Similarity=0.377 Sum_probs=95.8
Q ss_pred EEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCC--CCCeeEEEEC-----------------
Q psy7411 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLI--IPTSGTAYID----------------- 409 (474)
Q Consensus 349 I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~--~PtsG~i~i~----------------- 409 (474)
++++|+++.| +++++++++||++.+||+++|+||||||||||+++|+|+. +|++|+|.++
T Consensus 1 l~~~~l~~~~-~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g 79 (520)
T TIGR03269 1 IEVKNLTKKF-DGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVG 79 (520)
T ss_pred CEEEEEEEEE-CCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccc
Confidence 4689999999 4578999999999999999999999999999999999997 7999999997
Q ss_pred ------CeecC-------c----chHHhhcceEEEcCC-CCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhHh
Q psy7411 410 ------GHDIW-------Y----EMGKVRESLGLCPQY-DLLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSYV 468 (474)
Q Consensus 410 ------G~dI~-------~----~~~~ir~~IG~~~Q~-~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~~ 468 (474)
|.++. . .....|+.+|+++|+ +.+++.+|++||+.+....++.+.++..+++.+++..+
T Consensus 80 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 156 (520)
T TIGR03269 80 EPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMV 156 (520)
T ss_pred cccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 32221 0 112346679999997 67888899999998866656666666666677666543
No 235
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.73 E-value=1.1e-17 Score=182.58 Aligned_cols=114 Identities=24% Similarity=0.431 Sum_probs=97.7
Q ss_pred cEEEEeeEEEEcC-CceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chHHhhcceE
Q psy7411 348 GIQLRGLTKIYKT-GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMGKVRESLG 425 (474)
Q Consensus 348 ~I~i~~Lsk~y~~-~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~~ir~~IG 425 (474)
.++++|++++|++ ++++++++||++++||.++++|+||||||||+++|+|+++|++|+|.++|.++.. ..++.|+.++
T Consensus 341 ~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~ 420 (582)
T PRK11176 341 DIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVA 420 (582)
T ss_pred eEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhce
Confidence 4899999999964 3679999999999999999999999999999999999999999999999999874 4567788999
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy7411 426 LCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLL 463 (474)
Q Consensus 426 ~~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~ 463 (474)
|+||++.+|+. |++||+.+... ...+.++++++++.
T Consensus 421 ~v~Q~~~lf~~-Ti~~Ni~~~~~-~~~~~~~i~~al~~ 456 (582)
T PRK11176 421 LVSQNVHLFND-TIANNIAYART-EQYSREQIEEAARM 456 (582)
T ss_pred EEccCceeecc-hHHHHHhcCCC-CCCCHHHHHHHHHH
Confidence 99999999986 99999987531 12455666665553
No 236
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.73 E-value=3.7e-17 Score=180.51 Aligned_cols=122 Identities=20% Similarity=0.189 Sum_probs=100.0
Q ss_pred ccEEEEeeEEEEcC---CceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecC---------
Q psy7411 347 SGIQLRGLTKIYKT---GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIW--------- 414 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~---~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~--------- 414 (474)
+.++++|+++.|++ ..++++++||++++||++||+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 11 ~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~ 90 (623)
T PRK10261 11 DVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIEL 90 (623)
T ss_pred ceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEecccccccccc
Confidence 46899999999952 347999999999999999999999999999999999999999999999987541
Q ss_pred -c----chHHhh-cceEEEcCCC--CCCCCCCHHHHHHHHHhcC-CCCHHHHHHHHHHHHhHh
Q psy7411 415 -Y----EMGKVR-ESLGLCPQYD--LLFEELTVEDHLQFFAKGK-EFNGITYGRALLLMMSYV 468 (474)
Q Consensus 415 -~----~~~~ir-~~IG~~~Q~~--~L~~~LTV~E~L~~~~~lk-g~~~~~~~~~l~~~~~~~ 468 (474)
. ...+.| +.+||++|++ .+++.+||.||+.+..+.+ +.+.++..+++.++++.+
T Consensus 91 ~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 153 (623)
T PRK10261 91 SEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQV 153 (623)
T ss_pred ccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHC
Confidence 0 112333 4699999997 6888899999999876653 667777777777777654
No 237
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.73 E-value=1.4e-17 Score=182.02 Aligned_cols=114 Identities=24% Similarity=0.351 Sum_probs=98.3
Q ss_pred ccEEEEeeEEEEcCC-ceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chHHhhcce
Q psy7411 347 SGIQLRGLTKIYKTG-KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMGKVRESL 424 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~~-~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~~ir~~I 424 (474)
..++++|+++.|+++ +++++|+||++++||+++++||||||||||+++|+|+++|++|+|.++|.++.. +.+++|+.+
T Consensus 337 ~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 416 (574)
T PRK11160 337 VSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAI 416 (574)
T ss_pred CeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhhe
Confidence 358999999999643 579999999999999999999999999999999999999999999999999875 566788899
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy7411 425 GLCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLL 463 (474)
Q Consensus 425 G~~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~ 463 (474)
+++||++.+|+. |++||+.+... ..+.+++.++++.
T Consensus 417 ~~v~Q~~~lf~~-ti~~Ni~~~~~--~~~~~~i~~al~~ 452 (574)
T PRK11160 417 SVVSQRVHLFSA-TLRDNLLLAAP--NASDEALIEVLQQ 452 (574)
T ss_pred eEEcccchhhcc-cHHHHhhcCCC--ccCHHHHHHHHHH
Confidence 999999999986 99999988642 3455566655544
No 238
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.73 E-value=2.3e-17 Score=160.83 Aligned_cols=95 Identities=23% Similarity=0.381 Sum_probs=82.5
Q ss_pred ceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEEEcCCCCCCCCCCHHH
Q psy7411 362 KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVED 441 (474)
Q Consensus 362 ~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~~Q~~~L~~~LTV~E 441 (474)
..||+|+||++++||.+||+|+||||||||+|+|+|.++||+|++.++|+-..- +- +| -.+.+++|.+|
T Consensus 40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~l----i~--lg-----~Gf~pelTGre 108 (249)
T COG1134 40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPL----IE--LG-----AGFDPELTGRE 108 (249)
T ss_pred EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehh----hh--cc-----cCCCcccchHH
Confidence 579999999999999999999999999999999999999999999999864310 00 11 24567899999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHhH
Q psy7411 442 HLQFFAKGKEFNGITYGRALLLMMSY 467 (474)
Q Consensus 442 ~L~~~~~lkg~~~~~~~~~l~~~~~~ 467 (474)
|+.+.+.+.|+++++++++.++.+.+
T Consensus 109 Ni~l~~~~~G~~~~ei~~~~~eIieF 134 (249)
T COG1134 109 NIYLRGLILGLTRKEIDEKVDEIIEF 134 (249)
T ss_pred HHHHHHHHhCccHHHHHHHHHHHHHH
Confidence 99999999999999999999988754
No 239
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.73 E-value=2.3e-17 Score=176.90 Aligned_cols=116 Identities=25% Similarity=0.350 Sum_probs=93.2
Q ss_pred EEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcc--hHHhhcceEEEc
Q psy7411 351 LRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYE--MGKVRESLGLCP 428 (474)
Q Consensus 351 i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~--~~~ir~~IG~~~ 428 (474)
++|+++.| +++++++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++... ....++.+||+|
T Consensus 1 ~~nl~~~~-~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~ 79 (491)
T PRK10982 1 MSNISKSF-PGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVH 79 (491)
T ss_pred CCceEEEe-CCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEe
Confidence 36899999 457899999999999999999999999999999999999999999999999988532 234567799999
Q ss_pred CCCCCCCCCCHHHHHHHHHh-cCC--CCHHHHHHHHHHHHhH
Q psy7411 429 QYDLLFEELTVEDHLQFFAK-GKE--FNGITYGRALLLMMSY 467 (474)
Q Consensus 429 Q~~~L~~~LTV~E~L~~~~~-lkg--~~~~~~~~~l~~~~~~ 467 (474)
|++.+++.+||+||+.+... .++ .+.++..+++++++..
T Consensus 80 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 121 (491)
T PRK10982 80 QELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDE 121 (491)
T ss_pred cccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHH
Confidence 99989999999999987432 223 2334444455555443
No 240
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.72 E-value=1.3e-17 Score=181.74 Aligned_cols=115 Identities=26% Similarity=0.428 Sum_probs=101.5
Q ss_pred ccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chHHhhcceE
Q psy7411 347 SGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMGKVRESLG 425 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~~ir~~IG 425 (474)
..++++|++..|++++++++|+||++++||.+|++|||||||||+++.|.|+++|++|+|.++|.|+.. ..+.+|++++
T Consensus 327 ~~I~f~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~ 406 (567)
T COG1132 327 GSIEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIG 406 (567)
T ss_pred CeEEEEEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhcc
Confidence 348999999999646789999999999999999999999999999999999999999999999999984 6778899999
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy7411 426 LCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLLM 464 (474)
Q Consensus 426 ~~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~ 464 (474)
++||++.||.. |++||+.+...- .+++++.++++.-
T Consensus 407 ~V~Qd~~LF~~-TI~~NI~~g~~~--at~eei~~a~k~a 442 (567)
T COG1132 407 IVSQDPLLFSG-TIRENIALGRPD--ATDEEIEEALKLA 442 (567)
T ss_pred EEcccceeecc-cHHHHHhcCCCC--CCHHHHHHHHHHh
Confidence 99999999994 999999986432 5667777766543
No 241
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.72 E-value=4e-17 Score=160.71 Aligned_cols=102 Identities=20% Similarity=0.238 Sum_probs=85.8
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCC----CeeEEEECCeecCcchHHhhcc
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIP----TSGTAYIDGHDIWYEMGKVRES 423 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~P----tsG~i~i~G~dI~~~~~~ir~~ 423 (474)
.++++|+++.| + +++++++||++++||+++|+|+||||||||+++|+|+.+| ++|+|.++|+++.. .+..++.
T Consensus 4 ~l~~~~l~~~~-~-~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~-~~~~~~~ 80 (254)
T PRK10418 4 QIELRNIALQA-A-QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAP-CALRGRK 80 (254)
T ss_pred EEEEeCeEEEe-c-cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccc-cccccce
Confidence 47899999999 4 5799999999999999999999999999999999999999 99999999998852 2223457
Q ss_pred eEEEcCCCC--CCCCCCHHHHHHHHHhcCCC
Q psy7411 424 LGLCPQYDL--LFEELTVEDHLQFFAKGKEF 452 (474)
Q Consensus 424 IG~~~Q~~~--L~~~LTV~E~L~~~~~lkg~ 452 (474)
++|++|++. +.+.+|+.+++.......+.
T Consensus 81 i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (254)
T PRK10418 81 IATIMQNPRSAFNPLHTMHTHARETCLALGK 111 (254)
T ss_pred EEEEecCCccccCccccHHHHHHHHHHHcCC
Confidence 999999974 45667999998775544443
No 242
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.72 E-value=1.3e-17 Score=186.55 Aligned_cols=113 Identities=21% Similarity=0.337 Sum_probs=98.0
Q ss_pred cEEEEeeEEEEcC--CceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chHHhhcce
Q psy7411 348 GIQLRGLTKIYKT--GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMGKVRESL 424 (474)
Q Consensus 348 ~I~i~~Lsk~y~~--~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~~ir~~I 424 (474)
.++++|+++.|++ ++++++|+||++++||.++++|||||||||++++|+|+++|++|+|.++|+++.. +...+|+++
T Consensus 478 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i 557 (711)
T TIGR00958 478 LIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQV 557 (711)
T ss_pred eEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhc
Confidence 5899999999953 3579999999999999999999999999999999999999999999999999974 566788999
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy7411 425 GLCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLL 463 (474)
Q Consensus 425 G~~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~ 463 (474)
+||||++.+|+. |++||+.+.. ...+++++.++++.
T Consensus 558 ~~v~Q~~~lF~g-TIreNI~~g~--~~~~~e~i~~al~~ 593 (711)
T TIGR00958 558 ALVGQEPVLFSG-SVRENIAYGL--TDTPDEEIMAAAKA 593 (711)
T ss_pred eEEecCcccccc-CHHHHHhcCC--CCCCHHHHHHHHHH
Confidence 999999999986 9999998753 23455666665554
No 243
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.72 E-value=4.6e-18 Score=167.69 Aligned_cols=106 Identities=32% Similarity=0.472 Sum_probs=95.5
Q ss_pred ceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEEEc-CCCCCCCCCCHH
Q psy7411 362 KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCP-QYDLLFEELTVE 440 (474)
Q Consensus 362 ~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~~-Q~~~L~~~LTV~ 440 (474)
..||.|+||++++|+++|++|+|||||||+++||+|++.|++|.+.++|++...+.++.-+++|+++ |...++.++.+.
T Consensus 37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ 116 (325)
T COG4586 37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPAL 116 (325)
T ss_pred hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhh
Confidence 4699999999999999999999999999999999999999999999999998877667667787764 778888899999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhH
Q psy7411 441 DHLQFFAKGKEFNGITYGRALLLMMSY 467 (474)
Q Consensus 441 E~L~~~~~lkg~~~~~~~~~l~~~~~~ 467 (474)
|.+.....++.++.++..++++.|.+-
T Consensus 117 ds~~v~~~Iy~Ipd~~F~~r~~~l~ei 143 (325)
T COG4586 117 DSLEVLKLIYEIPDDEFAERLDFLTEI 143 (325)
T ss_pred hhHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 999999999999999988888887653
No 244
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.72 E-value=2.5e-17 Score=180.21 Aligned_cols=112 Identities=23% Similarity=0.400 Sum_probs=97.2
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chHHhhcceEE
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMGKVRESLGL 426 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~~ir~~IG~ 426 (474)
.++++|+++.|++++++++++|+++++||.++++|+||||||||+++|+|+++|++|+|.++|.++.. ..+++|++++|
T Consensus 334 ~I~~~~vsf~y~~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 413 (588)
T PRK13657 334 AVEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAV 413 (588)
T ss_pred eEEEEEEEEEeCCCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEE
Confidence 58999999999644679999999999999999999999999999999999999999999999999874 45678899999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHH
Q psy7411 427 CPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALL 462 (474)
Q Consensus 427 ~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~ 462 (474)
+||++.+|+. |++||+.+.. ...+++++.++++
T Consensus 414 v~Q~~~lf~~-Ti~~Ni~~~~--~~~~d~~i~~al~ 446 (588)
T PRK13657 414 VFQDAGLFNR-SIEDNIRVGR--PDATDEEMRAAAE 446 (588)
T ss_pred EecCcccccc-cHHHHHhcCC--CCCCHHHHHHHHH
Confidence 9999999986 9999998752 2345566555544
No 245
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.72 E-value=2.9e-17 Score=164.53 Aligned_cols=110 Identities=27% Similarity=0.420 Sum_probs=92.0
Q ss_pred EEEEeeEEEEc-CCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chHHhhcceEE
Q psy7411 349 IQLRGLTKIYK-TGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMGKVRESLGL 426 (474)
Q Consensus 349 I~i~~Lsk~y~-~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~~ir~~IG~ 426 (474)
++++|+++.|+ +...+++++||++++||+++|+|+||||||||+++|+|+.+ ++|+|.++|.++.. ...++|+.++|
T Consensus 3 i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~~ 81 (275)
T cd03289 3 MTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFGV 81 (275)
T ss_pred EEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEEE
Confidence 78999999995 24579999999999999999999999999999999999997 78999999999864 44567888999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy7411 427 CPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLL 463 (474)
Q Consensus 427 ~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~ 463 (474)
|||++.+++. |++||+..+.. .+.+++.+.++.
T Consensus 82 v~q~~~lf~~-tv~~nl~~~~~---~~~~~~~~~l~~ 114 (275)
T cd03289 82 IPQKVFIFSG-TFRKNLDPYGK---WSDEEIWKVAEE 114 (275)
T ss_pred ECCCcccchh-hHHHHhhhccC---CCHHHHHHHHHH
Confidence 9999999985 99999975432 344555555443
No 246
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.72 E-value=7.5e-17 Score=157.99 Aligned_cols=100 Identities=20% Similarity=0.305 Sum_probs=86.3
Q ss_pred ccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCC--CCCCeeEEEECCeecCcc-hHHhhc-
Q psy7411 347 SGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGL--IIPTSGTAYIDGHDIWYE-MGKVRE- 422 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL--~~PtsG~i~i~G~dI~~~-~~~ir~- 422 (474)
..++++++++.|+ ++.+++++||++++||+++|+|+||||||||+++|+|+ .+|++|++.++|.++... ....++
T Consensus 6 ~~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (252)
T CHL00131 6 PILEIKNLHASVN-ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHL 84 (252)
T ss_pred ceEEEEeEEEEeC-CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhee
Confidence 3689999999994 56899999999999999999999999999999999998 589999999999988642 222232
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHH
Q psy7411 423 SLGLCPQYDLLFEELTVEDHLQFFA 447 (474)
Q Consensus 423 ~IG~~~Q~~~L~~~LTV~E~L~~~~ 447 (474)
.+++++|++.+++.+|+.+++.+..
T Consensus 85 ~~~~~~q~~~~~~~~~~~~~l~~~~ 109 (252)
T CHL00131 85 GIFLAFQYPIEIPGVSNADFLRLAY 109 (252)
T ss_pred eEEEEeccccccccccHHHHHHHhh
Confidence 4889999999999999999998753
No 247
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.72 E-value=6.5e-17 Score=158.67 Aligned_cols=98 Identities=26% Similarity=0.418 Sum_probs=82.6
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCee-----cCc-chH---
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHD-----IWY-EMG--- 418 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~d-----I~~-~~~--- 418 (474)
.++++|+++.| +++.+++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|++ +.. ...
T Consensus 3 ~l~~~~l~~~~-~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (253)
T TIGR02323 3 LLQVSGLSKSY-GGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERR 81 (253)
T ss_pred eEEEeeeEEEe-CCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHH
Confidence 57899999999 45679999999999999999999999999999999999999999999999876 532 111
Q ss_pred -HhhcceEEEcCCCC--CCCCCCHHHHHHHH
Q psy7411 419 -KVRESLGLCPQYDL--LFEELTVEDHLQFF 446 (474)
Q Consensus 419 -~ir~~IG~~~Q~~~--L~~~LTV~E~L~~~ 446 (474)
..++.+++++|++. +++.+|+.||+...
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~ 112 (253)
T TIGR02323 82 RLMRTEWGFVHQNPRDGLRMRVSAGANIGER 112 (253)
T ss_pred HhhhcceEEEEeCcccccCccccHHHHHHHH
Confidence 12456999999864 55667899998653
No 248
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.72 E-value=5.2e-17 Score=150.48 Aligned_cols=95 Identities=24% Similarity=0.298 Sum_probs=80.6
Q ss_pred EEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEEEc
Q psy7411 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCP 428 (474)
Q Consensus 349 I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~~ 428 (474)
++++++++.|++++.+++++||++.+||+++++||||||||||+++|+|+.+|++|++.++|. +.++|++
T Consensus 1 i~~~~~~~~~~~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~----------~~i~~~~ 70 (166)
T cd03223 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG----------EDLLFLP 70 (166)
T ss_pred CEEEEEEEEcCCCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC----------ceEEEEC
Confidence 368999999954467999999999999999999999999999999999999999999999763 5699999
Q ss_pred CCCCCCCCCCHHHHHHHHHhcCCCCHH
Q psy7411 429 QYDLLFEELTVEDHLQFFAKGKEFNGI 455 (474)
Q Consensus 429 Q~~~L~~~LTV~E~L~~~~~lkg~~~~ 455 (474)
|++.++ ..|++||+.+. ..+.++.-
T Consensus 71 q~~~~~-~~tv~~nl~~~-~~~~LS~G 95 (166)
T cd03223 71 QRPYLP-LGTLREQLIYP-WDDVLSGG 95 (166)
T ss_pred CCCccc-cccHHHHhhcc-CCCCCCHH
Confidence 998765 57999999863 23334433
No 249
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.71 E-value=2.5e-17 Score=183.62 Aligned_cols=113 Identities=31% Similarity=0.469 Sum_probs=98.5
Q ss_pred cEEEEeeEEEEcC-CceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chHHhhcceE
Q psy7411 348 GIQLRGLTKIYKT-GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMGKVRESLG 425 (474)
Q Consensus 348 ~I~i~~Lsk~y~~-~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~~ir~~IG 425 (474)
.++++|++++|++ .+++++|+||++++||.++++|+||||||||+++|+|+++|++|+|.++|.++.. +..++|+++|
T Consensus 463 ~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~ 542 (694)
T TIGR03375 463 EIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIG 542 (694)
T ss_pred eEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccE
Confidence 5899999999953 3579999999999999999999999999999999999999999999999999974 5667899999
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy7411 426 LCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLL 463 (474)
Q Consensus 426 ~~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~ 463 (474)
||||++.+|+. |++||+.+... ..+.+++.++++.
T Consensus 543 ~v~Q~~~lf~~-TI~eNi~~~~~--~~~~~~i~~a~~~ 577 (694)
T TIGR03375 543 YVPQDPRLFYG-TLRDNIALGAP--YADDEEILRAAEL 577 (694)
T ss_pred EECCChhhhhh-hHHHHHhCCCC--CCCHHHHHHHHHH
Confidence 99999999986 99999987532 2456666666554
No 250
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.71 E-value=9.5e-17 Score=162.68 Aligned_cols=99 Identities=22% Similarity=0.454 Sum_probs=87.2
Q ss_pred ccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCC-----CCeeEEEECCeecCc---chH
Q psy7411 347 SGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLII-----PTSGTAYIDGHDIWY---EMG 418 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~-----PtsG~i~i~G~dI~~---~~~ 418 (474)
..++++|+++.| +++.+++++||++++||+++|+|+||||||||+++|+|+.+ |++|+|.++|+++.. ...
T Consensus 44 ~~l~i~nl~~~~-~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~ 122 (305)
T PRK14264 44 AKLSVEDLDVYY-GDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLV 122 (305)
T ss_pred ceEEEEEEEEEe-CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHH
Confidence 468999999999 45789999999999999999999999999999999999986 689999999998753 234
Q ss_pred HhhcceEEEcCCCCCCCCCCHHHHHHHHH
Q psy7411 419 KVRESLGLCPQYDLLFEELTVEDHLQFFA 447 (474)
Q Consensus 419 ~ir~~IG~~~Q~~~L~~~LTV~E~L~~~~ 447 (474)
.+|+.++|++|++.+++. |++||+.+..
T Consensus 123 ~~~~~i~~v~q~~~l~~~-tv~enl~~~~ 150 (305)
T PRK14264 123 ELRKRVGMVFQSPNPFPK-SIRENISYGP 150 (305)
T ss_pred HHhhceEEEccCCccccc-cHHHHHHhHH
Confidence 567789999999888874 9999998754
No 251
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=2.3e-17 Score=176.56 Aligned_cols=112 Identities=29% Similarity=0.433 Sum_probs=98.4
Q ss_pred EEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chHHhhcceEEE
Q psy7411 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMGKVRESLGLC 427 (474)
Q Consensus 349 I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~~ir~~IG~~ 427 (474)
++.+|+++.|++++++++|+||++++|+.++++|+||||||||+++|+|+.+|++|+|.++|.+.+. ....+|++++++
T Consensus 321 i~~~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v 400 (559)
T COG4988 321 ISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWV 400 (559)
T ss_pred eeecceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeee
Confidence 4455999999877799999999999999999999999999999999999999999999999999874 566789999999
Q ss_pred cCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy7411 428 PQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLL 463 (474)
Q Consensus 428 ~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~ 463 (474)
+|++.+|+. |++||+.++..- .+++++.++++.
T Consensus 401 ~Q~p~lf~g-TireNi~l~~~~--~s~e~i~~al~~ 433 (559)
T COG4988 401 SQNPYLFAG-TIRENILLARPD--ASDEEIIAALDQ 433 (559)
T ss_pred CCCCccccc-cHHHHhhccCCc--CCHHHHHHHHHH
Confidence 999999988 999999986432 456666666654
No 252
>KOG0058|consensus
Probab=99.71 E-value=1.6e-17 Score=181.12 Aligned_cols=113 Identities=25% Similarity=0.375 Sum_probs=100.1
Q ss_pred ccEEEEeeEEEEcC--CceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chHHhhcc
Q psy7411 347 SGIQLRGLTKIYKT--GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMGKVRES 423 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~--~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~~ir~~ 423 (474)
..|+++|+++.|+. +.++++|+||++++||+++|+||||+||||+.++|-.+++|++|+|.++|.|++. +...+|++
T Consensus 464 G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~ 543 (716)
T KOG0058|consen 464 GVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRK 543 (716)
T ss_pred ceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHH
Confidence 45999999999963 3469999999999999999999999999999999999999999999999999985 66778999
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHH
Q psy7411 424 LGLCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALL 462 (474)
Q Consensus 424 IG~~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~ 462 (474)
||+|-|+++||.. |++|||.+... +.+.+++.++-+
T Consensus 544 Ig~V~QEPvLFs~-sI~eNI~YG~~--~~t~e~i~~AAk 579 (716)
T KOG0058|consen 544 IGLVGQEPVLFSG-SIRENIAYGLD--NATDEEIEAAAK 579 (716)
T ss_pred eeeeeccceeecc-cHHHHHhcCCC--CCCHHHHHHHHH
Confidence 9999999999987 99999998765 566666665543
No 253
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.71 E-value=1.1e-16 Score=164.31 Aligned_cols=109 Identities=24% Similarity=0.387 Sum_probs=92.0
Q ss_pred ccEEEEeeEEEEc-CCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCC-----CCeeEEEECCeecCc---ch
Q psy7411 347 SGIQLRGLTKIYK-TGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLII-----PTSGTAYIDGHDIWY---EM 417 (474)
Q Consensus 347 ~~I~i~~Lsk~y~-~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~-----PtsG~i~i~G~dI~~---~~ 417 (474)
..++++|+++.|. +.+.+|+++||++++||++||+|+||||||||+++|+|+.+ |++|+|.++|+++.. ..
T Consensus 79 ~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~ 158 (329)
T PRK14257 79 NVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISS 158 (329)
T ss_pred ceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence 4689999999995 23579999999999999999999999999999999999986 579999999999863 23
Q ss_pred HHhhcceEEEcCCCCCCCCCCHHHHHHHHHhcCCCCHHH
Q psy7411 418 GKVRESLGLCPQYDLLFEELTVEDHLQFFAKGKEFNGIT 456 (474)
Q Consensus 418 ~~ir~~IG~~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~ 456 (474)
.++|+.++||||++.+++ .|++||+.+.....+...++
T Consensus 159 ~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~~~~~~~ 196 (329)
T PRK14257 159 LELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNNGINDRK 196 (329)
T ss_pred HhhhccEEEEecCCccCC-CcHHHHHHhHHHhcCCChHH
Confidence 456788999999999886 69999999765444544333
No 254
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.71 E-value=3e-17 Score=156.03 Aligned_cols=86 Identities=21% Similarity=0.391 Sum_probs=78.0
Q ss_pred EEEEeeEEEEcCC----ceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcce
Q psy7411 349 IQLRGLTKIYKTG----KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESL 424 (474)
Q Consensus 349 I~i~~Lsk~y~~~----~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~I 424 (474)
++++||++.|++. +.+++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++| ++
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g------------~i 68 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG------------SI 68 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC------------EE
Confidence 4689999999543 3699999999999999999999999999999999999999999999998 58
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHH
Q psy7411 425 GLCPQYDLLFEELTVEDHLQFFA 447 (474)
Q Consensus 425 G~~~Q~~~L~~~LTV~E~L~~~~ 447 (474)
||++|++.+++ .|++||+.+..
T Consensus 69 ~~~~q~~~l~~-~t~~enl~~~~ 90 (204)
T cd03250 69 AYVSQEPWIQN-GTIRENILFGK 90 (204)
T ss_pred EEEecCchhcc-CcHHHHhccCC
Confidence 99999998884 69999998753
No 255
>PLN03211 ABC transporter G-25; Provisional
Probab=99.71 E-value=3.7e-17 Score=181.56 Aligned_cols=114 Identities=22% Similarity=0.275 Sum_probs=94.9
Q ss_pred EEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCC--eeEEEECCeecCcchHHhhcceEEE
Q psy7411 350 QLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPT--SGTAYIDGHDIWYEMGKVRESLGLC 427 (474)
Q Consensus 350 ~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~Pt--sG~i~i~G~dI~~~~~~ir~~IG~~ 427 (474)
.+++++|.| +++++|+++|+++++||+++|+||||||||||+++|+|+.+|+ +|+|.++|+++.. +.++++|||
T Consensus 70 ~~~~l~~~~-~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~---~~~~~i~yv 145 (659)
T PLN03211 70 KISDETRQI-QERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK---QILKRTGFV 145 (659)
T ss_pred ccccccccC-CCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECch---hhccceEEE
Confidence 467788899 5678999999999999999999999999999999999999885 9999999998742 345679999
Q ss_pred cCCCCCCCCCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhH
Q psy7411 428 PQYDLLFEELTVEDHLQFFAKGK---EFNGITYGRALLLMMSY 467 (474)
Q Consensus 428 ~Q~~~L~~~LTV~E~L~~~~~lk---g~~~~~~~~~l~~~~~~ 467 (474)
+|++.+++.+||+||+.+.+..+ ..++++..+++++.++.
T Consensus 146 ~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~ 188 (659)
T PLN03211 146 TQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISE 188 (659)
T ss_pred CcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999877654 23445555556655543
No 256
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.71 E-value=2.9e-17 Score=182.82 Aligned_cols=100 Identities=23% Similarity=0.484 Sum_probs=92.2
Q ss_pred ccEEEEeeEEEEcCC-ceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chHHhhcce
Q psy7411 347 SGIQLRGLTKIYKTG-KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMGKVRESL 424 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~~-~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~~ir~~I 424 (474)
..++++|++++|+.. ..+|+|+||++++||.+|++|+||||||||+|+|+|+++|++|+|.++|.|+.. +...+|+++
T Consensus 470 g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~i 549 (709)
T COG2274 470 GEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQV 549 (709)
T ss_pred ceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhhe
Confidence 459999999999643 369999999999999999999999999999999999999999999999999974 678899999
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHH
Q psy7411 425 GLCPQYDLLFEELTVEDHLQFFA 447 (474)
Q Consensus 425 G~~~Q~~~L~~~LTV~E~L~~~~ 447 (474)
||++|++.||.. |++||+.+..
T Consensus 550 g~V~Q~~~Lf~g-SI~eNi~l~~ 571 (709)
T COG2274 550 GYVLQDPFLFSG-SIRENIALGN 571 (709)
T ss_pred eEEcccchhhcC-cHHHHHhcCC
Confidence 999999999987 9999998854
No 257
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.71 E-value=7.7e-17 Score=174.03 Aligned_cols=120 Identities=27% Similarity=0.380 Sum_probs=93.1
Q ss_pred ccEEEEeeEEEEcC----CceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEEC-Cee---cCc---
Q psy7411 347 SGIQLRGLTKIYKT----GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYID-GHD---IWY--- 415 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~----~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~-G~d---I~~--- 415 (474)
..++++|+++.|++ .+.+++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++ |.+ +..
T Consensus 278 ~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~ 357 (520)
T TIGR03269 278 PIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGP 357 (520)
T ss_pred ceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccch
Confidence 46899999999942 2579999999999999999999999999999999999999999999996 643 221
Q ss_pred -chHHhhcceEEEcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhH
Q psy7411 416 -EMGKVRESLGLCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSY 467 (474)
Q Consensus 416 -~~~~ir~~IG~~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~ 467 (474)
.....|+++||+||++.+++.+||.||+.+.... +.+.++..+++++++..
T Consensus 358 ~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~l~~ 409 (520)
T TIGR03269 358 DGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGL-ELPDELARMKAVITLKM 409 (520)
T ss_pred hhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHc-CCCHHHHHHHHHHHHHh
Confidence 1123456799999999899999999999875433 33333333444444443
No 258
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.71 E-value=7.9e-17 Score=160.35 Aligned_cols=96 Identities=26% Similarity=0.384 Sum_probs=81.0
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEEE
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLC 427 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~ 427 (474)
.++++|+++.|++++.+++++||++.+||+++|+||||||||||+++|+|+++|++|++.++|+++.. ...++.++|+
T Consensus 6 ~l~~~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~--~~~~~~i~~v 83 (272)
T PRK15056 6 GIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ--ALQKNLVAYV 83 (272)
T ss_pred eEEEEeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH--hhccceEEEe
Confidence 58899999999545689999999999999999999999999999999999999999999999998742 1123459999
Q ss_pred cCCCCCC--CCCCHHHHHHH
Q psy7411 428 PQYDLLF--EELTVEDHLQF 445 (474)
Q Consensus 428 ~Q~~~L~--~~LTV~E~L~~ 445 (474)
||++.+. ...++++++.+
T Consensus 84 ~q~~~~~~~~~~~~~~~i~~ 103 (272)
T PRK15056 84 PQSEEVDWSFPVLVEDVVMM 103 (272)
T ss_pred ccccccccCCCcchhhheec
Confidence 9997652 23478888764
No 259
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=1.5e-17 Score=156.55 Aligned_cols=114 Identities=24% Similarity=0.318 Sum_probs=100.3
Q ss_pred EEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEEEc
Q psy7411 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCP 428 (474)
Q Consensus 349 I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~~ 428 (474)
++.++|+... +...++.++||++.+||.+.+.||||+|||||+|+|+||.+|++|+|.++|..+....++.++.+-|+-
T Consensus 3 L~a~~L~~~R-~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLG 81 (209)
T COG4133 3 LEAENLSCER-GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLG 81 (209)
T ss_pred chhhhhhhcc-CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhh
Confidence 4566777666 567899999999999999999999999999999999999999999999999999887777777788887
Q ss_pred CCCCCCCCCCHHHHHHHHHhcCCC-CHHHHHHHHHH
Q psy7411 429 QYDLLFEELTVEDHLQFFAKGKEF-NGITYGRALLL 463 (474)
Q Consensus 429 Q~~~L~~~LTV~E~L~~~~~lkg~-~~~~~~~~l~~ 463 (474)
-.+.+-.++|+.||+.|+.++.|. +.+.+.++++.
T Consensus 82 H~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~ 117 (209)
T COG4133 82 HQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQ 117 (209)
T ss_pred ccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 788899999999999999999884 66777777653
No 260
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.70 E-value=1.2e-16 Score=152.00 Aligned_cols=95 Identities=25% Similarity=0.356 Sum_probs=83.2
Q ss_pred EEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCC--CCCCeeEEEECCeecCcc-hHH-hhcce
Q psy7411 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGL--IIPTSGTAYIDGHDIWYE-MGK-VRESL 424 (474)
Q Consensus 349 I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL--~~PtsG~i~i~G~dI~~~-~~~-ir~~I 424 (474)
++++|+++.|+ ++.+++++||++++||+++|+|+||||||||+++|+|+ .+|++|++.++|+++... ..+ .++.+
T Consensus 1 l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (200)
T cd03217 1 LEIKDLHVSVG-GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGI 79 (200)
T ss_pred CeEEEEEEEeC-CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcE
Confidence 36899999994 57899999999999999999999999999999999999 589999999999998642 222 34569
Q ss_pred EEEcCCCCCCCCCCHHHHHH
Q psy7411 425 GLCPQYDLLFEELTVEDHLQ 444 (474)
Q Consensus 425 G~~~Q~~~L~~~LTV~E~L~ 444 (474)
+|+||++.+++..++++++.
T Consensus 80 ~~v~q~~~~~~~~~~~~~l~ 99 (200)
T cd03217 80 FLAFQYPPEIPGVKNADFLR 99 (200)
T ss_pred EEeecChhhccCccHHHHHh
Confidence 99999999999999999883
No 261
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.70 E-value=4.5e-17 Score=177.32 Aligned_cols=113 Identities=26% Similarity=0.421 Sum_probs=95.7
Q ss_pred ccEEEEeeEEEEcC--CceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chHHhhcc
Q psy7411 347 SGIQLRGLTKIYKT--GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMGKVRES 423 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~--~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~~ir~~ 423 (474)
..++++|++..|++ ++.+++++||++++||.++++|+||||||||+++|+|+++|++|+|.++|.++.. ...++|+.
T Consensus 336 ~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 415 (576)
T TIGR02204 336 GEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRAR 415 (576)
T ss_pred ceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHh
Confidence 35899999999953 2579999999999999999999999999999999999999999999999999874 45667889
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHH
Q psy7411 424 LGLCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALL 462 (474)
Q Consensus 424 IG~~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~ 462 (474)
++||||++.+|+. |++||+.+... ..+.+++.++++
T Consensus 416 i~~~~Q~~~lf~~-Ti~~Ni~~~~~--~~~~~~~~~~l~ 451 (576)
T TIGR02204 416 MALVPQDPVLFAA-SVMENIRYGRP--DATDEEVEAAAR 451 (576)
T ss_pred ceEEccCCccccc-cHHHHHhcCCC--CCCHHHHHHHHH
Confidence 9999999999987 99999987531 234455555444
No 262
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=1.5e-16 Score=163.03 Aligned_cols=99 Identities=24% Similarity=0.266 Sum_probs=84.1
Q ss_pred cEEEEeeEEEEc---CCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCC----CCeeEEEECCeecCc-chH-
Q psy7411 348 GIQLRGLTKIYK---TGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLII----PTSGTAYIDGHDIWY-EMG- 418 (474)
Q Consensus 348 ~I~i~~Lsk~y~---~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~----PtsG~i~i~G~dI~~-~~~- 418 (474)
.++++||++.|+ +...+++++||++.+||+++|+|+||||||||+++|+|+.+ |++|+|.++|+++.. ...
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 478999999994 23579999999999999999999999999999999999986 589999999999853 122
Q ss_pred --Hh-hcceEEEcCCCC--CCCCCCHHHHHHHH
Q psy7411 419 --KV-RESLGLCPQYDL--LFEELTVEDHLQFF 446 (474)
Q Consensus 419 --~i-r~~IG~~~Q~~~--L~~~LTV~E~L~~~ 446 (474)
.. ++.++|+||++. +.+.+|+.+++...
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~ 115 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQN 115 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHH
Confidence 22 346999999975 67889999999763
No 263
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.70 E-value=6.1e-17 Score=175.75 Aligned_cols=112 Identities=22% Similarity=0.362 Sum_probs=95.7
Q ss_pred cEEEEeeEEEEcC-CceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chHHhhcceE
Q psy7411 348 GIQLRGLTKIYKT-GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMGKVRESLG 425 (474)
Q Consensus 348 ~I~i~~Lsk~y~~-~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~~ir~~IG 425 (474)
.++++|++++|++ ++++++++||++++||.++++||||||||||+++|+|+++|++|++.++|.++.. ..+..|+.++
T Consensus 316 ~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~ 395 (544)
T TIGR01842 316 HLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIG 395 (544)
T ss_pred eEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheE
Confidence 5899999999953 3579999999999999999999999999999999999999999999999999874 4556788999
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHH
Q psy7411 426 LCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALL 462 (474)
Q Consensus 426 ~~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~ 462 (474)
++||++.+++. |++||+.++. ...+.+++.++++
T Consensus 396 ~v~q~~~lf~~-ti~~Ni~~~~--~~~~~~~~~~~~~ 429 (544)
T TIGR01842 396 YLPQDVELFPG-TVAENIARFG--ENADPEKIIEAAK 429 (544)
T ss_pred EecCCcccccc-cHHHHHhccC--CCCCHHHHHHHHH
Confidence 99999999986 9999998643 2244555554433
No 264
>KOG0057|consensus
Probab=99.70 E-value=3e-17 Score=174.06 Aligned_cols=98 Identities=27% Similarity=0.503 Sum_probs=91.1
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chHHhhcceEE
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMGKVRESLGL 426 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~~ir~~IG~ 426 (474)
.|+++|++..|++++++|+++||+|++||.+|++|+|||||||++|+|.++.+ .+|+|.|+|+++.+ +.+.+|+.||+
T Consensus 351 ~I~F~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~ 429 (591)
T KOG0057|consen 351 SIEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGV 429 (591)
T ss_pred cEEEEeeEEEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeE
Confidence 49999999999766669999999999999999999999999999999999999 99999999999985 67789999999
Q ss_pred EcCCCCCCCCCCHHHHHHHHH
Q psy7411 427 CPQYDLLFEELTVEDHLQFFA 447 (474)
Q Consensus 427 ~~Q~~~L~~~LTV~E~L~~~~ 447 (474)
+||+..||++ |+.+|+.+..
T Consensus 430 VPQd~~LFnd-TIl~NI~YGn 449 (591)
T KOG0057|consen 430 VPQDSVLFND-TILYNIKYGN 449 (591)
T ss_pred eCCcccccch-hHHHHhhcCC
Confidence 9999999987 9999998753
No 265
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.70 E-value=5e-17 Score=176.65 Aligned_cols=114 Identities=25% Similarity=0.472 Sum_probs=98.1
Q ss_pred cEEEEeeEEEEcC-CceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chHHhhcceE
Q psy7411 348 GIQLRGLTKIYKT-GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMGKVRESLG 425 (474)
Q Consensus 348 ~I~i~~Lsk~y~~-~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~~ir~~IG 425 (474)
.++++|++++|++ ++++++++||++++||+++++|+||+|||||+++|+|+++|++|+|.++|.++.. ..++.|++++
T Consensus 330 ~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~ 409 (571)
T TIGR02203 330 DVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVA 409 (571)
T ss_pred eEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhce
Confidence 5899999999953 3579999999999999999999999999999999999999999999999999864 4567788999
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy7411 426 LCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLL 463 (474)
Q Consensus 426 ~~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~ 463 (474)
||||++.+|+. |++|||.++. .+..+.+++.+.++.
T Consensus 410 ~v~Q~~~lf~~-Ti~~Ni~~~~-~~~~~~~~i~~~l~~ 445 (571)
T TIGR02203 410 LVSQDVVLFND-TIANNIAYGR-TEQADRAEIERALAA 445 (571)
T ss_pred EEccCcccccc-cHHHHHhcCC-CCCCCHHHHHHHHHH
Confidence 99999999987 9999998764 124556666665554
No 266
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.69 E-value=8.5e-17 Score=176.33 Aligned_cols=112 Identities=22% Similarity=0.326 Sum_probs=95.9
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chHHhhcceEE
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMGKVRESLGL 426 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~~ir~~IG~ 426 (474)
.++++|+++.|++++++++++||++++||+++++||||||||||+++|+|+++|++|+|.++|.++.. ..+..|+.+++
T Consensus 334 ~i~~~~v~~~y~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 413 (585)
T TIGR01192 334 AVEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIAT 413 (585)
T ss_pred eEEEEEEEEECCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEE
Confidence 58999999999644679999999999999999999999999999999999999999999999999864 45677889999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHH
Q psy7411 427 CPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALL 462 (474)
Q Consensus 427 ~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~ 462 (474)
+||++.+++. |++||+.+... ..+.+++.++++
T Consensus 414 v~q~~~lf~~-ti~~Ni~~~~~--~~~~~~~~~a~~ 446 (585)
T TIGR01192 414 VFQDAGLFNR-SIRENIRLGRE--GATDEEVYEAAK 446 (585)
T ss_pred EccCCccCcc-cHHHHHhcCCC--CCCHHHHHHHHH
Confidence 9999999975 99999987532 235555555443
No 267
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.69 E-value=7.5e-17 Score=159.12 Aligned_cols=98 Identities=22% Similarity=0.304 Sum_probs=86.5
Q ss_pred ccEEEEeeEEEEcCC-ceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chHHhhcce
Q psy7411 347 SGIQLRGLTKIYKTG-KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMGKVRESL 424 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~~-~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~~ir~~I 424 (474)
..++++|+++.|++. +.+++++||++++||+++|+|+||||||||+++|+|+.+|++|++.++|+++.. ...+.++.+
T Consensus 18 ~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i 97 (257)
T cd03288 18 GEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRL 97 (257)
T ss_pred ceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhE
Confidence 458999999999532 579999999999999999999999999999999999999999999999998864 344567789
Q ss_pred EEEcCCCCCCCCCCHHHHHHH
Q psy7411 425 GLCPQYDLLFEELTVEDHLQF 445 (474)
Q Consensus 425 G~~~Q~~~L~~~LTV~E~L~~ 445 (474)
+|++|++.+++. |++||+..
T Consensus 98 ~~v~q~~~l~~~-tv~~nl~~ 117 (257)
T cd03288 98 SIILQDPILFSG-SIRFNLDP 117 (257)
T ss_pred EEECCCCccccc-HHHHhcCc
Confidence 999999988874 99999864
No 268
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.69 E-value=3.5e-17 Score=152.24 Aligned_cols=106 Identities=22% Similarity=0.278 Sum_probs=93.7
Q ss_pred cEEEEeeEEEEc---CCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcch----HHh
Q psy7411 348 GIQLRGLTKIYK---TGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEM----GKV 420 (474)
Q Consensus 348 ~I~i~~Lsk~y~---~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~----~~i 420 (474)
.+++++++|.-+ +...+|++++|.+.+||.++|+||+|+|||||+-+|+||+.|++|+|.+.|++..+.. ..+
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 578899999774 3457999999999999999999999999999999999999999999999999986422 233
Q ss_pred h-cceEEEcCCCCCCCCCCHHHHHHHHHhcCCCC
Q psy7411 421 R-ESLGLCPQYDLLFEELTVEDHLQFFAKGKEFN 453 (474)
Q Consensus 421 r-~~IG~~~Q~~~L~~~LTV~E~L~~~~~lkg~~ 453 (474)
| +++|+|+|.+.|.|.||..||+.....++|-+
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~ 119 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLELRGES 119 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhhhcCCc
Confidence 4 57999999999999999999999999999843
No 269
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.69 E-value=1.8e-16 Score=171.61 Aligned_cols=121 Identities=19% Similarity=0.252 Sum_probs=96.9
Q ss_pred cEEEEeeEEEEcC---CceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCC-----CeeEEEECCeecCcc-h-
Q psy7411 348 GIQLRGLTKIYKT---GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIP-----TSGTAYIDGHDIWYE-M- 417 (474)
Q Consensus 348 ~I~i~~Lsk~y~~---~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~P-----tsG~i~i~G~dI~~~-~- 417 (474)
.++++|+++.|++ .+++++++||++.+||+++|+||||||||||+++|+|+++| ++|++.++|+++... .
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 5899999999952 25799999999999999999999999999999999999986 799999999998531 1
Q ss_pred --HHhh-cceEEEcCCCC--CCCCCCHHHHHHHHHhc-CCCCHHHHHHHHHHHHhHh
Q psy7411 418 --GKVR-ESLGLCPQYDL--LFEELTVEDHLQFFAKG-KEFNGITYGRALLLMMSYV 468 (474)
Q Consensus 418 --~~ir-~~IG~~~Q~~~--L~~~LTV~E~L~~~~~l-kg~~~~~~~~~l~~~~~~~ 468 (474)
...| +.+||++|++. +++.+|+.|++.+.... .+.+..+..++++++++.+
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 141 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRV 141 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHC
Confidence 2233 57999999964 67778999998865433 3555656666667666543
No 270
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.69 E-value=8.4e-17 Score=172.86 Aligned_cols=122 Identities=16% Similarity=0.220 Sum_probs=95.5
Q ss_pred ccEEEEeeEEEEc--CCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCC-CeeEEEECCeecCc--chHHhh
Q psy7411 347 SGIQLRGLTKIYK--TGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIP-TSGTAYIDGHDIWY--EMGKVR 421 (474)
Q Consensus 347 ~~I~i~~Lsk~y~--~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~P-tsG~i~i~G~dI~~--~~~~ir 421 (474)
..++++|+++.|+ +++.+++++||++++||+++|+||||||||||+++|+|+.+| ++|+|.++|+++.. ....++
T Consensus 256 ~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~ 335 (500)
T TIGR02633 256 VILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIR 335 (500)
T ss_pred ceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHh
Confidence 3689999999983 235699999999999999999999999999999999999985 89999999998853 223457
Q ss_pred cceEEEcCCC---CCCCCCCHHHHHHHHH--hcC---CCCHHHHHHHHHHHHhHh
Q psy7411 422 ESLGLCPQYD---LLFEELTVEDHLQFFA--KGK---EFNGITYGRALLLMMSYV 468 (474)
Q Consensus 422 ~~IG~~~Q~~---~L~~~LTV~E~L~~~~--~lk---g~~~~~~~~~l~~~~~~~ 468 (474)
+++||++|+. .+++.+|++||+.+.. ... +....+..+++++++.++
T Consensus 336 ~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 390 (500)
T TIGR02633 336 AGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRL 390 (500)
T ss_pred CCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhc
Confidence 7899999995 5889999999998742 121 223333344555555543
No 271
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.69 E-value=6.5e-17 Score=153.14 Aligned_cols=101 Identities=33% Similarity=0.509 Sum_probs=90.1
Q ss_pred ccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECC-eecCc--chHHhhcc
Q psy7411 347 SGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDG-HDIWY--EMGKVRES 423 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G-~dI~~--~~~~ir~~ 423 (474)
..+++++++.+| ++.+|++++||++.+||.-+++|||||||||+|.+++|-.+|+.|+++++| .|+.+ +.+-.|..
T Consensus 4 ~iL~~~~vsVsF-~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~G 82 (249)
T COG4674 4 IILYLDGVSVSF-GGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAG 82 (249)
T ss_pred ceEEEeceEEEE-cceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhc
Confidence 357899999999 679999999999999999999999999999999999999999999999999 78864 33334566
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHHHh
Q psy7411 424 LGLCPQYDLLFEELTVEDHLQFFAK 448 (474)
Q Consensus 424 IG~~~Q~~~L~~~LTV~E~L~~~~~ 448 (474)
||=-+|.+..|+.+||+||+.+..+
T Consensus 83 IGRKFQ~PtVfe~ltV~eNLelA~~ 107 (249)
T COG4674 83 IGRKFQKPTVFENLTVRENLELALN 107 (249)
T ss_pred cCccccCCeehhhccHHHHHHHHhc
Confidence 8888999999999999999987644
No 272
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.69 E-value=8.2e-17 Score=179.57 Aligned_cols=113 Identities=23% Similarity=0.373 Sum_probs=97.3
Q ss_pred ccEEEEeeEEEEcC-CceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chHHhhcce
Q psy7411 347 SGIQLRGLTKIYKT-GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMGKVRESL 424 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~-~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~~ir~~I 424 (474)
..++++|++++|++ ++.+++++||++++||.++++|+||||||||+++|+|+++|++|+|.++|.++.. +.+++|+++
T Consensus 454 ~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i 533 (694)
T TIGR01846 454 GAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQM 533 (694)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhC
Confidence 35899999999953 3569999999999999999999999999999999999999999999999999974 566788999
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHH
Q psy7411 425 GLCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALL 462 (474)
Q Consensus 425 G~~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~ 462 (474)
|||||++.+|+. |++||+.+.. ...+.+++.++++
T Consensus 534 ~~v~q~~~lf~~-ti~eNi~~~~--~~~~~~~i~~a~~ 568 (694)
T TIGR01846 534 GVVLQENVLFSR-SIRDNIALCN--PGAPFEHVIHAAK 568 (694)
T ss_pred eEEccCCeehhh-hHHHHHhcCC--CCCCHHHHHHHHH
Confidence 999999999986 9999998743 2345566655544
No 273
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.69 E-value=1.4e-16 Score=172.50 Aligned_cols=120 Identities=20% Similarity=0.248 Sum_probs=95.3
Q ss_pred ccEEEEeeEEEEcC----------CceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcc
Q psy7411 347 SGIQLRGLTKIYKT----------GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYE 416 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~----------~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~ 416 (474)
..++++|+++.|++ .+.+++++||++++||+++|+||||||||||+++|+|+.+ ++|+|.++|+++...
T Consensus 274 ~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~ 352 (529)
T PRK15134 274 PLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNL 352 (529)
T ss_pred CcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEcccc
Confidence 45899999999941 3579999999999999999999999999999999999985 899999999987531
Q ss_pred ----hHHhhcceEEEcCCC--CCCCCCCHHHHHHHHHhcCC--CCHHHHHHHHHHHHhH
Q psy7411 417 ----MGKVRESLGLCPQYD--LLFEELTVEDHLQFFAKGKE--FNGITYGRALLLMMSY 467 (474)
Q Consensus 417 ----~~~ir~~IG~~~Q~~--~L~~~LTV~E~L~~~~~lkg--~~~~~~~~~l~~~~~~ 467 (474)
....|+++||+||++ .+++.+||.||+.+....++ .+.++..+++++++..
T Consensus 353 ~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 411 (529)
T PRK15134 353 NRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEE 411 (529)
T ss_pred chhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHH
Confidence 123466799999996 48888999999988644332 3444444555565554
No 274
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.69 E-value=2e-16 Score=156.19 Aligned_cols=87 Identities=30% Similarity=0.521 Sum_probs=77.2
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEEE
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLC 427 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~ 427 (474)
.++++|+++.| +++.+++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++| +..++|+
T Consensus 4 ~l~~~~l~~~~-~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~----------~~~i~~v 72 (251)
T PRK09544 4 LVSLENVSVSF-GQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG----------KLRIGYV 72 (251)
T ss_pred EEEEeceEEEE-CCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC----------ccCEEEe
Confidence 57899999999 456899999999999999999999999999999999999999999999876 2459999
Q ss_pred cCCCCCCCC--CCHHHHHHH
Q psy7411 428 PQYDLLFEE--LTVEDHLQF 445 (474)
Q Consensus 428 ~Q~~~L~~~--LTV~E~L~~ 445 (474)
+|++.+++. .|+.+++.+
T Consensus 73 ~q~~~~~~~l~~~~~~~~~~ 92 (251)
T PRK09544 73 PQKLYLDTTLPLTVNRFLRL 92 (251)
T ss_pred ccccccccccChhHHHHHhc
Confidence 999877765 377887654
No 275
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.69 E-value=1.4e-16 Score=154.58 Aligned_cols=104 Identities=22% Similarity=0.251 Sum_probs=82.6
Q ss_pred eeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCC----CeeEEEECCeecCcchHHhhcceEEEcCCCC--CCCCC
Q psy7411 364 AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIP----TSGTAYIDGHDIWYEMGKVRESLGLCPQYDL--LFEEL 437 (474)
Q Consensus 364 aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~P----tsG~i~i~G~dI~~~~~~ir~~IG~~~Q~~~--L~~~L 437 (474)
+++++||++++||+++|+||||||||||+++|+|+.+| ++|++.++|+++... +..++.+||++|++. +++.+
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~-~~~~~~i~~~~q~~~~~~~~~~ 79 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL-SIRGRHIATIMQNPRTAFNPLF 79 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh-hhhhheeEEEecCchhhcCccc
Confidence 57899999999999999999999999999999999999 899999999988532 223357999999974 56778
Q ss_pred CHHHHHHHHHhcCCCCHHHHHHHHHHHHhHh
Q psy7411 438 TVEDHLQFFAKGKEFNGITYGRALLLMMSYV 468 (474)
Q Consensus 438 TV~E~L~~~~~lkg~~~~~~~~~l~~~~~~~ 468 (474)
|+.||+.+.....+....+..+++.+++..+
T Consensus 80 t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 110 (230)
T TIGR02770 80 TMGNHAIETLRSLGKLSKQARALILEALEAV 110 (230)
T ss_pred CHHHHHHHHHHHcCccHHHHHHHHHHHHHHc
Confidence 9999998765544443344445556665543
No 276
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.68 E-value=8.7e-17 Score=153.93 Aligned_cols=102 Identities=26% Similarity=0.404 Sum_probs=90.1
Q ss_pred EEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chHHhhcceEEE
Q psy7411 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMGKVRESLGLC 427 (474)
Q Consensus 349 I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~~ir~~IG~~ 427 (474)
|+.+|++.+. .++++++++||++++||+.+++||||||||||+|.|+|-..|++|++.++|.+... ...+..++-+++
T Consensus 2 i~a~nls~~~-~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVl 80 (259)
T COG4559 2 IRAENLSYSL-AGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVL 80 (259)
T ss_pred eeeeeeEEEe-ecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhc
Confidence 6789999988 56899999999999999999999999999999999999999999999999999874 445556667999
Q ss_pred cCCCCCCCCCCHHHHHHHHHhcCC
Q psy7411 428 PQYDLLFEELTVEDHLQFFAKGKE 451 (474)
Q Consensus 428 ~Q~~~L~~~LTV~E~L~~~~~lkg 451 (474)
||+..+-...||+|-+.+...-++
T Consensus 81 pQ~s~laFpFtv~eVV~mGr~p~~ 104 (259)
T COG4559 81 PQNSSLAFPFTVQEVVQMGRIPHR 104 (259)
T ss_pred ccCcccccceEHHHHHHhcccccc
Confidence 999888667899999999866553
No 277
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.68 E-value=1.3e-16 Score=156.84 Aligned_cols=110 Identities=21% Similarity=0.225 Sum_probs=85.7
Q ss_pred EEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chHHhhcceEEEc
Q psy7411 350 QLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMGKVRESLGLCP 428 (474)
Q Consensus 350 ~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~~ir~~IG~~~ 428 (474)
+++||++. .+++++||++++||+++|+||||||||||+++|+|+.++ +|++.++|+++.. ...+.++.+||+|
T Consensus 2 ~~~~l~~~-----~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~~~~~~~~~~i~~v~ 75 (248)
T PRK03695 2 QLNDVAVS-----TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSAAELARHRAYLS 75 (248)
T ss_pred cccccchh-----ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCcCCHHHHhhheEEec
Confidence 46677763 389999999999999999999999999999999999865 8999999998854 3344566799999
Q ss_pred CCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q psy7411 429 QYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMS 466 (474)
Q Consensus 429 Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~ 466 (474)
|++.+++.+|+.||+.+.... +.+.++..+++++.++
T Consensus 76 q~~~~~~~~tv~~nl~~~~~~-~~~~~~~~~~~~~~l~ 112 (248)
T PRK03695 76 QQQTPPFAMPVFQYLTLHQPD-KTRTEAVASALNEVAE 112 (248)
T ss_pred ccCccCCCccHHHHHHhcCcc-CCCcHHHHHHHHHHHH
Confidence 998888889999999886432 2333333344444443
No 278
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.68 E-value=3e-16 Score=153.22 Aligned_cols=96 Identities=24% Similarity=0.336 Sum_probs=81.9
Q ss_pred EEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCC--CCCeeEEEECCeecCc-chHH-hhcce
Q psy7411 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLI--IPTSGTAYIDGHDIWY-EMGK-VRESL 424 (474)
Q Consensus 349 I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~--~PtsG~i~i~G~dI~~-~~~~-ir~~I 424 (474)
++++|+++.|+ ++++++++||++++||+++|+|+||||||||+++|+|+. +|++|++.++|+++.. .... .++.+
T Consensus 2 i~~~nl~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (248)
T PRK09580 2 LSIKDLHVSVE-DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGI 80 (248)
T ss_pred eEEEEEEEEeC-CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcce
Confidence 68999999994 568999999999999999999999999999999999995 6999999999998753 2222 33569
Q ss_pred EEEcCCCCCCCCCCHHHHHHH
Q psy7411 425 GLCPQYDLLFEELTVEDHLQF 445 (474)
Q Consensus 425 G~~~Q~~~L~~~LTV~E~L~~ 445 (474)
+|++|++.+++.+++.+++..
T Consensus 81 ~~~~q~~~~~~~~~~~~~~~~ 101 (248)
T PRK09580 81 FMAFQYPVEIPGVSNQFFLQT 101 (248)
T ss_pred EEEecCchhccchhHHHHHHH
Confidence 999999988888787776543
No 279
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.68 E-value=3.9e-16 Score=173.17 Aligned_cols=120 Identities=24% Similarity=0.349 Sum_probs=99.3
Q ss_pred cEEEEeeEEEEcC---CceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcc-hHH---h
Q psy7411 348 GIQLRGLTKIYKT---GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYE-MGK---V 420 (474)
Q Consensus 348 ~I~i~~Lsk~y~~---~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~-~~~---i 420 (474)
.++++|+++.|++ .+.+++++||++++||+++|+||||||||||+++|+|+++|++|++.++|+++... ..+ .
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL 83 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHH
Confidence 5889999999952 24799999999999999999999999999999999999999999999999998642 222 2
Q ss_pred -hcceEEEcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhH
Q psy7411 421 -RESLGLCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSY 467 (474)
Q Consensus 421 -r~~IG~~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~ 467 (474)
++.++|++|++.+++++|+.||+.+.....+.+.++..++..++++.
T Consensus 84 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~ 131 (648)
T PRK10535 84 RREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQR 131 (648)
T ss_pred HhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 46799999999999999999999986655565555555555555543
No 280
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.68 E-value=1.4e-16 Score=171.66 Aligned_cols=97 Identities=18% Similarity=0.351 Sum_probs=85.1
Q ss_pred ccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc--chHHhhcce
Q psy7411 347 SGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY--EMGKVRESL 424 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~--~~~~ir~~I 424 (474)
..++++|+++.| + .+++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. .....++.+
T Consensus 264 ~~l~~~~l~~~~-~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i 340 (510)
T PRK09700 264 TVFEVRNVTSRD-R--KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGM 340 (510)
T ss_pred cEEEEeCccccC-C--CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCc
Confidence 468999999876 3 38999999999999999999999999999999999999999999999998753 223456789
Q ss_pred EEEcCC---CCCCCCCCHHHHHHHH
Q psy7411 425 GLCPQY---DLLFEELTVEDHLQFF 446 (474)
Q Consensus 425 G~~~Q~---~~L~~~LTV~E~L~~~ 446 (474)
||+||+ ..+++.+|+.||+.+.
T Consensus 341 ~~v~q~~~~~~~~~~~tv~e~l~~~ 365 (510)
T PRK09700 341 AYITESRRDNGFFPNFSIAQNMAIS 365 (510)
T ss_pred EEccCccccCCCcCCCcHHHHhccc
Confidence 999997 4688999999999874
No 281
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.68 E-value=1.3e-16 Score=174.13 Aligned_cols=112 Identities=17% Similarity=0.245 Sum_probs=95.6
Q ss_pred cEEEEeeEEEEcC-CceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chHHhhcceE
Q psy7411 348 GIQLRGLTKIYKT-GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMGKVRESLG 425 (474)
Q Consensus 348 ~I~i~~Lsk~y~~-~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~~ir~~IG 425 (474)
.+++++++++|++ ++.+++++||++++||+++++||||||||||+++|+|+++|++|+|.++|+++.. ....+|+.++
T Consensus 313 ~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 392 (569)
T PRK10789 313 ELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLA 392 (569)
T ss_pred cEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheE
Confidence 4899999999953 3579999999999999999999999999999999999999999999999999864 4567788999
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHH
Q psy7411 426 LCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALL 462 (474)
Q Consensus 426 ~~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~ 462 (474)
+++|++.+|+. |++||+.+... ..+.++++++++
T Consensus 393 ~v~q~~~lf~~-ti~~Ni~~~~~--~~~~~~~~~~~~ 426 (569)
T PRK10789 393 VVSQTPFLFSD-TVANNIALGRP--DATQQEIEHVAR 426 (569)
T ss_pred EEccCCeeccc-cHHHHHhcCCC--CCCHHHHHHHHH
Confidence 99999999986 99999987532 234555555444
No 282
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.68 E-value=1.1e-16 Score=141.85 Aligned_cols=78 Identities=37% Similarity=0.679 Sum_probs=73.3
Q ss_pred eeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chHHhhcceEEEcCCCCCCCCCCHHHH
Q psy7411 365 VDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMGKVRESLGLCPQYDLLFEELTVEDH 442 (474)
Q Consensus 365 L~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~~ir~~IG~~~Q~~~L~~~LTV~E~ 442 (474)
|+++|+++++||+++++|+||||||||+++|+|+.+|++|+|.++|+++.. .....++.+++++|++.+++.+|+.||
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~ 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 689999999999999999999999999999999999999999999999986 455677889999999999999999998
No 283
>PLN03130 ABC transporter C family member; Provisional
Probab=99.68 E-value=1.3e-16 Score=191.66 Aligned_cols=112 Identities=27% Similarity=0.411 Sum_probs=99.3
Q ss_pred cEEEEeeEEEEcCC-ceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chHHhhcceE
Q psy7411 348 GIQLRGLTKIYKTG-KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMGKVRESLG 425 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~-~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~~ir~~IG 425 (474)
.++++|++++|+++ +++|+|+||++++||.+|++|++|||||||+++|.|+++|++|+|.++|.|+.+ ..+++|++++
T Consensus 1237 ~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~Is 1316 (1622)
T PLN03130 1237 SIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLG 1316 (1622)
T ss_pred cEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccE
Confidence 59999999999533 479999999999999999999999999999999999999999999999999975 5678899999
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy7411 426 LCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLL 463 (474)
Q Consensus 426 ~~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~ 463 (474)
++||++.||+. |++|||..+. ..+.+++.++++.
T Consensus 1317 iVpQdp~LF~G-TIreNLd~~~---~~tdeei~~Al~~ 1350 (1622)
T PLN03130 1317 IIPQAPVLFSG-TVRFNLDPFN---EHNDADLWESLER 1350 (1622)
T ss_pred EECCCCccccc-cHHHHhCcCC---CCCHHHHHHHHHH
Confidence 99999999987 9999998653 3466777776653
No 284
>PLN03232 ABC transporter C family member; Provisional
Probab=99.68 E-value=1e-16 Score=191.84 Aligned_cols=112 Identities=25% Similarity=0.374 Sum_probs=99.1
Q ss_pred cEEEEeeEEEEcCC-ceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chHHhhcceE
Q psy7411 348 GIQLRGLTKIYKTG-KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMGKVRESLG 425 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~-~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~~ir~~IG 425 (474)
.++++|++++|+++ +++|+|+||++++||.+|++|++|||||||+++|.|+++|++|+|.++|.|+.+ ..+++|++++
T Consensus 1234 ~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~ 1313 (1495)
T PLN03232 1234 SIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLS 1313 (1495)
T ss_pred cEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcE
Confidence 49999999999533 579999999999999999999999999999999999999999999999999975 5678899999
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy7411 426 LCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLL 463 (474)
Q Consensus 426 ~~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~ 463 (474)
++||++.+|+. |++|||..+. ..+.+++.++++.
T Consensus 1314 iVpQdp~LF~g-TIr~NL~~~~---~~sdeei~~al~~ 1347 (1495)
T PLN03232 1314 IIPQSPVLFSG-TVRFNIDPFS---EHNDADLWEALER 1347 (1495)
T ss_pred EECCCCeeeCc-cHHHHcCCCC---CCCHHHHHHHHHH
Confidence 99999999987 9999998642 3566777776653
No 285
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.68 E-value=2.1e-16 Score=170.28 Aligned_cols=122 Identities=17% Similarity=0.268 Sum_probs=96.0
Q ss_pred ccEEEEeeEEEEc--CCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCC-CCeeEEEECCeecCcc--hHHhh
Q psy7411 347 SGIQLRGLTKIYK--TGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLII-PTSGTAYIDGHDIWYE--MGKVR 421 (474)
Q Consensus 347 ~~I~i~~Lsk~y~--~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~-PtsG~i~i~G~dI~~~--~~~ir 421 (474)
..++++|+++.|+ +++++++++||++++||+++|+||||||||||+++|+|+.+ |++|+|.++|+++... ....+
T Consensus 258 ~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~ 337 (506)
T PRK13549 258 VILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIA 337 (506)
T ss_pred ceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHH
Confidence 3589999999994 23579999999999999999999999999999999999998 5999999999987532 23446
Q ss_pred cceEEEcCCC---CCCCCCCHHHHHHHHH--hcCC---CCHHHHHHHHHHHHhHh
Q psy7411 422 ESLGLCPQYD---LLFEELTVEDHLQFFA--KGKE---FNGITYGRALLLMMSYV 468 (474)
Q Consensus 422 ~~IG~~~Q~~---~L~~~LTV~E~L~~~~--~lkg---~~~~~~~~~l~~~~~~~ 468 (474)
+.+||++|++ .+++.+|+.||+.+.. ...+ .+.++..+++++++.++
T Consensus 338 ~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 392 (506)
T PRK13549 338 QGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRL 392 (506)
T ss_pred CCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhc
Confidence 6799999985 4788899999998642 2222 23334445566666654
No 286
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.67 E-value=1.1e-16 Score=147.67 Aligned_cols=121 Identities=28% Similarity=0.350 Sum_probs=107.4
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecC-------cchHHh
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIW-------YEMGKV 420 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~-------~~~~~i 420 (474)
.|+++++.+.| +...+|-|++|+.++||.+.|+||+|||||||+|.|.-|.-|.+|+..|.|.... +...++
T Consensus 2 sirv~~in~~y-g~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~l 80 (242)
T COG4161 2 SIQLNGINCFY-GAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDL 80 (242)
T ss_pred ceEEccccccc-ccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHH
Confidence 47899999999 6788999999999999999999999999999999999999999999999886442 234568
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHH-HHhcCCCCHHHHHHHHHHHHhHhh
Q psy7411 421 RESLGLCPQYDLLFEELTVEDHLQF-FAKGKEFNGITYGRALLLMMSYVW 469 (474)
Q Consensus 421 r~~IG~~~Q~~~L~~~LTV~E~L~~-~~~lkg~~~~~~~~~l~~~~~~~~ 469 (474)
|+++|+++|...|||++||.||+.- ..+..|+++++..++-.+.++++-
T Consensus 81 r~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlr 130 (242)
T COG4161 81 RRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLR 130 (242)
T ss_pred HHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhc
Confidence 8999999999999999999999865 477889999998888888888763
No 287
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.67 E-value=3.5e-16 Score=151.98 Aligned_cols=99 Identities=23% Similarity=0.327 Sum_probs=79.6
Q ss_pred eeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEEEcCCCCCCCCCCHHHHHH
Q psy7411 365 VDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQ 444 (474)
Q Consensus 365 L~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~~Q~~~L~~~LTV~E~L~ 444 (474)
++++||++++||+++|+||||||||||+++|+|+.+|++|++.++|+++.... ...+|++|++.+++.+|+.||+.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~----~~~~~v~q~~~l~~~~tv~e~l~ 76 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPG----PDRMVVFQNYSLLPWLTVRENIA 76 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCC----hhheEEecCcccCCCCCHHHHHH
Confidence 57899999999999999999999999999999999999999999999875321 12489999999999999999998
Q ss_pred HHHh--cCCCCHHHHHHHHHHHHhH
Q psy7411 445 FFAK--GKEFNGITYGRALLLMMSY 467 (474)
Q Consensus 445 ~~~~--lkg~~~~~~~~~l~~~~~~ 467 (474)
+... ..+...++..+++.++++.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~l~~ 101 (230)
T TIGR01184 77 LAVDRVLPDLSKSERRAIVEEHIAL 101 (230)
T ss_pred HHHHhcccCCCHHHHHHHHHHHHHH
Confidence 8532 2344444444455555543
No 288
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.67 E-value=2.4e-16 Score=152.66 Aligned_cols=107 Identities=20% Similarity=0.254 Sum_probs=85.3
Q ss_pred EEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEEEc
Q psy7411 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCP 428 (474)
Q Consensus 349 I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~~ 428 (474)
+.++++++.| +.+++++++||++++||+++|+||||||||||+++|+|+.+|++|++.++|+++.. .+
T Consensus 23 l~~~~~~~~~-~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~----~~------- 90 (224)
T cd03220 23 LGILGRKGEV-GEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSL----LG------- 90 (224)
T ss_pred hhhhhhhhhc-CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchh----hc-------
Confidence 5688999999 56789999999999999999999999999999999999999999999999987631 11
Q ss_pred CCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhH
Q psy7411 429 QYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSY 467 (474)
Q Consensus 429 Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~ 467 (474)
+...+.+.+|++||+.+....++.+.++..+++++++..
T Consensus 91 ~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~ 129 (224)
T cd03220 91 LGGGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEF 129 (224)
T ss_pred ccccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 122345678999999987666665555555555555543
No 289
>PTZ00243 ABC transporter; Provisional
Probab=99.67 E-value=2.1e-16 Score=189.56 Aligned_cols=112 Identities=21% Similarity=0.386 Sum_probs=99.1
Q ss_pred cEEEEeeEEEEcCC-ceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chHHhhcceE
Q psy7411 348 GIQLRGLTKIYKTG-KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMGKVRESLG 425 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~-~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~~ir~~IG 425 (474)
.++++|++.+|+++ ..+|+|+||++++||.+|++|++|||||||+++|.|+++|++|+|.++|.|+.+ ..+++|+++|
T Consensus 1308 ~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~ 1387 (1560)
T PTZ00243 1308 SLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFS 1387 (1560)
T ss_pred eEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcce
Confidence 49999999999644 359999999999999999999999999999999999999999999999999975 5678899999
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy7411 426 LCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLL 463 (474)
Q Consensus 426 ~~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~ 463 (474)
++||++.||+. |++|||..+ ...+.++++++++.
T Consensus 1388 iVpQdp~LF~g-TIreNIdp~---~~~sdeeI~~Al~~ 1421 (1560)
T PTZ00243 1388 MIPQDPVLFDG-TVRQNVDPF---LEASSAEVWAALEL 1421 (1560)
T ss_pred EECCCCccccc-cHHHHhCcc---cCCCHHHHHHHHHH
Confidence 99999999987 999999653 24566777777664
No 290
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.67 E-value=4e-17 Score=151.45 Aligned_cols=92 Identities=32% Similarity=0.505 Sum_probs=84.8
Q ss_pred CCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chHHhhcceEEEcCCCCCCCCCC
Q psy7411 360 TGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMGKVRESLGLCPQYDLLFEELT 438 (474)
Q Consensus 360 ~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~~ir~~IG~~~Q~~~L~~~LT 438 (474)
++.++|+++||++.+||..++.||+|||||||+|+++-|++||+|++++.|+++.. ..+..|+++.||.|.+.||++ |
T Consensus 14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~-t 92 (223)
T COG4619 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGD-T 92 (223)
T ss_pred CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCcccccc-c
Confidence 45689999999999999999999999999999999999999999999999999985 677889999999999999998 9
Q ss_pred HHHHHHHHHhcCCC
Q psy7411 439 VEDHLQFFAKGKEF 452 (474)
Q Consensus 439 V~E~L~~~~~lkg~ 452 (474)
|+||+.|.-+++..
T Consensus 93 VeDNlifP~~~r~r 106 (223)
T COG4619 93 VEDNLIFPWQIRNR 106 (223)
T ss_pred hhhccccchHHhcc
Confidence 99999997766543
No 291
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.67 E-value=1.9e-16 Score=172.02 Aligned_cols=94 Identities=28% Similarity=0.420 Sum_probs=85.6
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chHHhhcceEE
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMGKVRESLGL 426 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~~ir~~IG~ 426 (474)
.++++|++++|++++++++++||++++||.++++||||||||||+++|+|+++|++|+|.++|+++.. +.+++|+++++
T Consensus 322 ~i~~~~v~f~y~~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 401 (547)
T PRK10522 322 TLELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSA 401 (547)
T ss_pred eEEEEEEEEEeCCCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEE
Confidence 58999999999644579999999999999999999999999999999999999999999999999874 45678889999
Q ss_pred EcCCCCCCCCCCHHHH
Q psy7411 427 CPQYDLLFEELTVEDH 442 (474)
Q Consensus 427 ~~Q~~~L~~~LTV~E~ 442 (474)
++|++.+|+. |++||
T Consensus 402 v~q~~~lf~~-ti~~n 416 (547)
T PRK10522 402 VFTDFHLFDQ-LLGPE 416 (547)
T ss_pred EecChhHHHH-hhccc
Confidence 9999999876 77776
No 292
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.66 E-value=4.7e-17 Score=152.42 Aligned_cols=121 Identities=19% Similarity=0.302 Sum_probs=105.2
Q ss_pred ccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-----------
Q psy7411 347 SGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY----------- 415 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~----------- 415 (474)
+.++++||.|+| +...+|+++||+.++|+++.++|.+|+||||++||+.-|..|+.|.|.++|+.++.
T Consensus 5 ~~l~v~dlHK~~-G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~a 83 (256)
T COG4598 5 NALEVEDLHKRY-GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPA 83 (256)
T ss_pred cceehhHHHhhc-ccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeC
Confidence 457899999999 67899999999999999999999999999999999999999999999999998741
Q ss_pred ---chHHhhcceEEEcCCCCCCCCCCHHHHHHHH-HhcCCCCHHHHHHHHHHHHhHh
Q psy7411 416 ---EMGKVRESLGLCPQYDLLFEELTVEDHLQFF-AKGKEFNGITYGRALLLMMSYV 468 (474)
Q Consensus 416 ---~~~~ir~~IG~~~Q~~~L~~~LTV~E~L~~~-~~lkg~~~~~~~~~l~~~~~~~ 468 (474)
...++|.++|+|+|+.+||.+|||.||+.-. -..-|.+++++.++-+..+..|
T Consensus 84 d~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kV 140 (256)
T COG4598 84 DKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKV 140 (256)
T ss_pred CHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHh
Confidence 2345778899999999999999999998654 4456888888777777666554
No 293
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.66 E-value=3.9e-16 Score=144.23 Aligned_cols=80 Identities=39% Similarity=0.695 Sum_probs=71.4
Q ss_pred EEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcc-h-HHhhcceEE
Q psy7411 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYE-M-GKVRESLGL 426 (474)
Q Consensus 349 I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~-~-~~ir~~IG~ 426 (474)
++++|+++.|+ ++++++++||++++||+++|+||||+|||||+++|+|+.+|++|++.++|+++... . +..++.+||
T Consensus 1 l~~~~l~~~~~-~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~ 79 (163)
T cd03216 1 LELRGITKRFG-GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAM 79 (163)
T ss_pred CEEEEEEEEEC-CeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEE
Confidence 46899999994 56899999999999999999999999999999999999999999999999988642 2 335677999
Q ss_pred EcC
Q psy7411 427 CPQ 429 (474)
Q Consensus 427 ~~Q 429 (474)
++|
T Consensus 80 ~~q 82 (163)
T cd03216 80 VYQ 82 (163)
T ss_pred EEe
Confidence 999
No 294
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.66 E-value=5.7e-16 Score=166.20 Aligned_cols=123 Identities=28% Similarity=0.397 Sum_probs=101.8
Q ss_pred cccEEEEeeEEEEcC----------CceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecC-
Q psy7411 346 ASGIQLRGLTKIYKT----------GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIW- 414 (474)
Q Consensus 346 ~~~I~i~~Lsk~y~~----------~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~- 414 (474)
.+.++++||+|.|.. ...|++++||++++||++||+|++|||||||.|+|+||.+|++|++.++|.+..
T Consensus 278 ~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~ 357 (539)
T COG1123 278 EPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDL 357 (539)
T ss_pred CceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCccccc
Confidence 456899999999951 247999999999999999999999999999999999999999999999998832
Q ss_pred --cchHHhhcceEEEcCCC--CCCCCCCHHHHHHHHHhcCCC-CHHHHHHHHHHHHhHh
Q psy7411 415 --YEMGKVRESLGLCPQYD--LLFEELTVEDHLQFFAKGKEF-NGITYGRALLLMMSYV 468 (474)
Q Consensus 415 --~~~~~ir~~IG~~~Q~~--~L~~~LTV~E~L~~~~~lkg~-~~~~~~~~l~~~~~~~ 468 (474)
.+..+.|+++-+++|++ .|.|.+||.+.+.--..+++. +.++..+++.+++..|
T Consensus 358 ~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~V 416 (539)
T COG1123 358 TGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELV 416 (539)
T ss_pred ccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHc
Confidence 23445677788888875 699999999999988776654 3566666777777654
No 295
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.66 E-value=2.7e-16 Score=188.52 Aligned_cols=112 Identities=21% Similarity=0.321 Sum_probs=99.5
Q ss_pred cEEEEeeEEEEcCC-ceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chHHhhcceE
Q psy7411 348 GIQLRGLTKIYKTG-KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMGKVRESLG 425 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~-~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~~ir~~IG 425 (474)
.++++|++.+|+.+ .++|+|+||++++||.+|++|++|||||||+++|.|+++|++|+|.++|.|+.+ ..+.+|++++
T Consensus 1284 ~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~ 1363 (1522)
T TIGR00957 1284 RVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKIT 1363 (1522)
T ss_pred cEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCe
Confidence 59999999999533 479999999999999999999999999999999999999999999999999975 5678899999
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy7411 426 LCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLL 463 (474)
Q Consensus 426 ~~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~ 463 (474)
++||++.||+. |++|||..+. ..+.+++.++++.
T Consensus 1364 iVpQdp~LF~g-TIr~NLdp~~---~~sdeei~~al~~ 1397 (1522)
T TIGR00957 1364 IIPQDPVLFSG-SLRMNLDPFS---QYSDEEVWWALEL 1397 (1522)
T ss_pred EECCCCcccCc-cHHHHcCccc---CCCHHHHHHHHHH
Confidence 99999999997 9999997543 3567777777664
No 296
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.65 E-value=1.5e-15 Score=151.16 Aligned_cols=107 Identities=23% Similarity=0.358 Sum_probs=85.3
Q ss_pred cEEEEeeEEEEc-------------------CCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEE
Q psy7411 348 GIQLRGLTKIYK-------------------TGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYI 408 (474)
Q Consensus 348 ~I~i~~Lsk~y~-------------------~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i 408 (474)
.++++||+|+|. +.+.+++++||++++||+++|+||||||||||+++|+|+.+|++|++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~ 83 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDR 83 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 367788887763 1245899999999999999999999999999999999999999999999
Q ss_pred CCeecCcchHHhhcceEEEcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q psy7411 409 DGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMS 466 (474)
Q Consensus 409 ~G~dI~~~~~~ir~~IG~~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~ 466 (474)
+|+ +++++|...+.+.+|+.||+.+....++.+.++..+..+.+++
T Consensus 84 ~g~------------~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~ 129 (264)
T PRK13546 84 NGE------------VSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIE 129 (264)
T ss_pred CCE------------EeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 985 3456777777788999999987665566655555554444443
No 297
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.65 E-value=3.9e-16 Score=170.23 Aligned_cols=90 Identities=24% Similarity=0.302 Sum_probs=81.7
Q ss_pred ccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEE
Q psy7411 347 SGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGL 426 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~ 426 (474)
+.++++|+++.|++++++++++||++++||+++|+||||||||||+++|+|+.+|++|+|.+++ +..+||
T Consensus 5 ~~l~i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~----------~~~i~~ 74 (556)
T PRK11819 5 YIYTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP----------GIKVGY 74 (556)
T ss_pred EEEEEeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC----------CCEEEE
Confidence 4689999999994257899999999999999999999999999999999999999999999864 235999
Q ss_pred EcCCCCCCCCCCHHHHHHHH
Q psy7411 427 CPQYDLLFEELTVEDHLQFF 446 (474)
Q Consensus 427 ~~Q~~~L~~~LTV~E~L~~~ 446 (474)
|+|++.+++.+|+.||+.+.
T Consensus 75 v~Q~~~~~~~~tv~e~l~~~ 94 (556)
T PRK11819 75 LPQEPQLDPEKTVRENVEEG 94 (556)
T ss_pred EecCCCCCCCCcHHHHHHHh
Confidence 99999999999999999864
No 298
>PLN03140 ABC transporter G family member; Provisional
Probab=99.65 E-value=4.2e-14 Score=168.62 Aligned_cols=119 Identities=22% Similarity=0.244 Sum_probs=96.0
Q ss_pred cEEEEeeEEEEc------------CCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCC--CeeEEEECCeec
Q psy7411 348 GIQLRGLTKIYK------------TGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIP--TSGTAYIDGHDI 413 (474)
Q Consensus 348 ~I~i~~Lsk~y~------------~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~P--tsG~i~i~G~dI 413 (474)
.+..+||+...+ +.+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|++.++|++.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 478889887652 234799999999999999999999999999999999998763 789999999886
Q ss_pred CcchHHhhcceEEEcCCCCCCCCCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhHh
Q psy7411 414 WYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAKGK---EFNGITYGRALLLMMSYV 468 (474)
Q Consensus 414 ~~~~~~ir~~IG~~~Q~~~L~~~LTV~E~L~~~~~lk---g~~~~~~~~~l~~~~~~~ 468 (474)
.. ...++.+|||+|++.+++.+||+||+.+.+.++ ..+.++..+.+++++..+
T Consensus 947 ~~--~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~l 1002 (1470)
T PLN03140 947 KQ--ETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELV 1002 (1470)
T ss_pred Ch--HHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHC
Confidence 42 245667999999999999999999999987654 234455555666666543
No 299
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.65 E-value=3e-16 Score=147.23 Aligned_cols=94 Identities=27% Similarity=0.387 Sum_probs=81.8
Q ss_pred EEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEEEc
Q psy7411 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCP 428 (474)
Q Consensus 349 I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~~ 428 (474)
+.+++++..|+ +.==.++++++.||+++++||+|||||||++.++|+..|.+|++.++|+|..... ..+|-+.+++
T Consensus 2 l~L~~V~~~y~---~~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~-P~~RPVSmlF 77 (231)
T COG3840 2 LALDDVRFSYG---HLPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASP-PAERPVSMLF 77 (231)
T ss_pred ccccceEEeeC---cceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCC-cccCChhhhh
Confidence 45778888893 2345788999999999999999999999999999999999999999999986432 2355689999
Q ss_pred CCCCCCCCCCHHHHHHHH
Q psy7411 429 QYDLLFEELTVEDHLQFF 446 (474)
Q Consensus 429 Q~~~L~~~LTV~E~L~~~ 446 (474)
|+++||.++||++|+.+.
T Consensus 78 QEnNLFaHLtV~qNigLG 95 (231)
T COG3840 78 QENNLFAHLTVAQNIGLG 95 (231)
T ss_pred hccccchhhhhhhhhccc
Confidence 999999999999999875
No 300
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.64 E-value=4.8e-16 Score=185.38 Aligned_cols=113 Identities=24% Similarity=0.368 Sum_probs=98.4
Q ss_pred cEEEEeeEEEEcC--CceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCC------------------------
Q psy7411 348 GIQLRGLTKIYKT--GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIP------------------------ 401 (474)
Q Consensus 348 ~I~i~~Lsk~y~~--~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~P------------------------ 401 (474)
.++++||+++|++ ++++|+++||++++||+++|+|||||||||++++|.|+++|
T Consensus 1165 ~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~ 1244 (1466)
T PTZ00265 1165 KIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQG 1244 (1466)
T ss_pred eEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccc
Confidence 4999999999952 34799999999999999999999999999999999999998
Q ss_pred ------------------------------CeeEEEECCeecCc-chHHhhcceEEEcCCCCCCCCCCHHHHHHHHHhcC
Q psy7411 402 ------------------------------TSGTAYIDGHDIWY-EMGKVRESLGLCPQYDLLFEELTVEDHLQFFAKGK 450 (474)
Q Consensus 402 ------------------------------tsG~i~i~G~dI~~-~~~~ir~~IG~~~Q~~~L~~~LTV~E~L~~~~~lk 450 (474)
++|+|.++|.|+.. +...+|+++|||+|++.||+. |++|||.+.. .
T Consensus 1245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~g-TIreNI~~g~--~ 1321 (1466)
T PTZ00265 1245 DEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNM-SIYENIKFGK--E 1321 (1466)
T ss_pred ccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccc-cHHHHHhcCC--C
Confidence 69999999999975 567889999999999999975 9999999863 2
Q ss_pred CCCHHHHHHHHHH
Q psy7411 451 EFNGITYGRALLL 463 (474)
Q Consensus 451 g~~~~~~~~~l~~ 463 (474)
..+.++++++++.
T Consensus 1322 ~at~eeI~~A~k~ 1334 (1466)
T PTZ00265 1322 DATREDVKRACKF 1334 (1466)
T ss_pred CCCHHHHHHHHHH
Confidence 3566676666553
No 301
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.64 E-value=7e-16 Score=167.08 Aligned_cols=87 Identities=31% Similarity=0.440 Sum_probs=80.1
Q ss_pred EEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEEEc
Q psy7411 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCP 428 (474)
Q Consensus 349 I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~~ 428 (474)
++++|+++.| +++++++++||++.+||+++|+||||||||||+++|+|+.+|++|+|.++|. +.+||++
T Consensus 2 l~i~~ls~~~-~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~----------~~i~~~~ 70 (530)
T PRK15064 2 LSTANITMQF-GAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN----------ERLGKLR 70 (530)
T ss_pred EEEEEEEEEe-CCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC----------CEEEEEe
Confidence 6899999999 4578999999999999999999999999999999999999999999999872 3589999
Q ss_pred CCCCCCCCCCHHHHHHHH
Q psy7411 429 QYDLLFEELTVEDHLQFF 446 (474)
Q Consensus 429 Q~~~L~~~LTV~E~L~~~ 446 (474)
|++.+++.+|++||+.+.
T Consensus 71 q~~~~~~~~tv~e~l~~~ 88 (530)
T PRK15064 71 QDQFAFEEFTVLDTVIMG 88 (530)
T ss_pred ccCCcCCCCcHHHHHHHh
Confidence 999999999999999763
No 302
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.64 E-value=9.5e-16 Score=169.21 Aligned_cols=105 Identities=24% Similarity=0.259 Sum_probs=90.9
Q ss_pred CceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCC---eeEEEECCeecCcchHHhhcceEEEcCCCCCCCCC
Q psy7411 361 GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPT---SGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEEL 437 (474)
Q Consensus 361 ~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~Pt---sG~i~i~G~dI~~~~~~ir~~IG~~~Q~~~L~~~L 437 (474)
++++|+|+|+++++||+++|+||||||||||+++|+|..+|. +|+|.++|+++.. .+.|+.+|||+|++.+++.+
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~--~~~~~~i~yv~Q~~~~~~~l 114 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDA--KEMRAISAYVQQDDLFIPTL 114 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCH--HHHhhhceeeccccccCccC
Confidence 467999999999999999999999999999999999998885 8999999998752 35677899999999999999
Q ss_pred CHHHHHHHHHhcCC---CCHHHHHHHHHHHHhH
Q psy7411 438 TVEDHLQFFAKGKE---FNGITYGRALLLMMSY 467 (474)
Q Consensus 438 TV~E~L~~~~~lkg---~~~~~~~~~l~~~~~~ 467 (474)
||+||+.|.++++. .++++..+++++++..
T Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~ 147 (617)
T TIGR00955 115 TVREHLMFQAHLRMPRRVTKKEKRERVDEVLQA 147 (617)
T ss_pred cHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHH
Confidence 99999999887653 3456666677777664
No 303
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.64 E-value=6.2e-16 Score=168.42 Aligned_cols=89 Identities=24% Similarity=0.300 Sum_probs=81.1
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEEE
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLC 427 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~ 427 (474)
.++++|+++.|++++++++++||++++||+++|+||||||||||+++|+|+.+|++|+|.+++ +..+||+
T Consensus 4 ~i~~~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~----------~~~i~~v 73 (552)
T TIGR03719 4 IYTMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP----------GIKVGYL 73 (552)
T ss_pred EEEEeeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC----------CCEEEEE
Confidence 589999999995256899999999999999999999999999999999999999999999874 2459999
Q ss_pred cCCCCCCCCCCHHHHHHHH
Q psy7411 428 PQYDLLFEELTVEDHLQFF 446 (474)
Q Consensus 428 ~Q~~~L~~~LTV~E~L~~~ 446 (474)
+|++.+++.+||.||+.+.
T Consensus 74 ~Q~~~~~~~~tv~e~i~~~ 92 (552)
T TIGR03719 74 PQEPQLDPTKTVRENVEEG 92 (552)
T ss_pred eccCCCCCCCcHHHHHHHh
Confidence 9999999999999999863
No 304
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.64 E-value=6.9e-16 Score=165.42 Aligned_cols=97 Identities=19% Similarity=0.131 Sum_probs=81.2
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chHHhhcceEE
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMGKVRESLGL 426 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~~ir~~IG~ 426 (474)
.++++|+++.| +++++++++||++++||+++|+||||||||||+|+|+|+.+|++|++.++|+++.. ...+.++.+|+
T Consensus 3 ~l~~~~l~~~~-~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~ 81 (490)
T PRK10938 3 SLQISQGTFRL-SDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSD 81 (490)
T ss_pred eEEEEeEEEEc-CCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhce
Confidence 47899999999 45679999999999999999999999999999999999999999999999987643 23344567999
Q ss_pred EcCCCCC--C------CCCCHHHHHHH
Q psy7411 427 CPQYDLL--F------EELTVEDHLQF 445 (474)
Q Consensus 427 ~~Q~~~L--~------~~LTV~E~L~~ 445 (474)
++|++.+ + ..+|++|++..
T Consensus 82 ~~q~~~~~~~~~~~~~~~~~~~~~~~~ 108 (490)
T PRK10938 82 EWQRNNTDMLSPGEDDTGRTTAEIIQD 108 (490)
T ss_pred eccCcchhhcccchhhccccHHHhccc
Confidence 9998543 1 14688888753
No 305
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.63 E-value=1.7e-15 Score=164.01 Aligned_cols=89 Identities=26% Similarity=0.407 Sum_probs=79.8
Q ss_pred ccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEE
Q psy7411 347 SGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGL 426 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~ 426 (474)
..++++|+++.| +++.+++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+ +.+||
T Consensus 318 ~~l~~~~l~~~~-~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~----------~~i~~ 386 (530)
T PRK15064 318 NALEVENLTKGF-DNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN----------ANIGY 386 (530)
T ss_pred ceEEEEeeEEee-CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc----------eEEEE
Confidence 468999999999 4567999999999999999999999999999999999999999999999872 46999
Q ss_pred EcCCCC--CCCCCCHHHHHHHH
Q psy7411 427 CPQYDL--LFEELTVEDHLQFF 446 (474)
Q Consensus 427 ~~Q~~~--L~~~LTV~E~L~~~ 446 (474)
++|+.. +++.+|+.||+.++
T Consensus 387 ~~q~~~~~~~~~~t~~~~~~~~ 408 (530)
T PRK15064 387 YAQDHAYDFENDLTLFDWMSQW 408 (530)
T ss_pred EcccccccCCCCCcHHHHHHHh
Confidence 999863 66779999998764
No 306
>KOG0056|consensus
Probab=99.63 E-value=4.5e-16 Score=163.07 Aligned_cols=99 Identities=30% Similarity=0.537 Sum_probs=92.7
Q ss_pred ccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chHHhhcceE
Q psy7411 347 SGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMGKVRESLG 425 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~~ir~~IG 425 (474)
..++++|+++.|..++++++|+||++.+|+.++++||+|+||||+||+|-.+...++|.|.++|+||+. ....+|++||
T Consensus 536 G~i~fsnvtF~Y~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IG 615 (790)
T KOG0056|consen 536 GKIEFSNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIG 615 (790)
T ss_pred CeEEEEEeEEecCCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcC
Confidence 459999999999878999999999999999999999999999999999999999999999999999975 5667899999
Q ss_pred EEcCCCCCCCCCCHHHHHHHH
Q psy7411 426 LCPQYDLLFEELTVEDHLQFF 446 (474)
Q Consensus 426 ~~~Q~~~L~~~LTV~E~L~~~ 446 (474)
+|||+.+||++ |+..|+++.
T Consensus 616 VVPQDtvLFNd-TI~yNIrya 635 (790)
T KOG0056|consen 616 VVPQDTVLFND-TILYNIRYA 635 (790)
T ss_pred cccCcceeecc-eeeeheeec
Confidence 99999999987 999999864
No 307
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.62 E-value=1.8e-15 Score=164.99 Aligned_cols=94 Identities=29% Similarity=0.333 Sum_probs=82.7
Q ss_pred ccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEE
Q psy7411 347 SGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGL 426 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~ 426 (474)
..++++|+++.| +++.+++++||++++||+++|+||||||||||+++|+|+.+|++|+|.+++ ++ .+||
T Consensus 323 ~~l~~~~l~~~~-~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~~---------~i~~ 391 (556)
T PRK11819 323 KVIEAENLSKSF-GDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-TV---------KLAY 391 (556)
T ss_pred eEEEEEeEEEEE-CCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-ce---------EEEE
Confidence 469999999999 456899999999999999999999999999999999999999999999843 21 4999
Q ss_pred EcCCC-CCCCCCCHHHHHHHHHhcCC
Q psy7411 427 CPQYD-LLFEELTVEDHLQFFAKGKE 451 (474)
Q Consensus 427 ~~Q~~-~L~~~LTV~E~L~~~~~lkg 451 (474)
+||+. .+++.+|+.||+.+.....+
T Consensus 392 v~q~~~~~~~~~tv~e~l~~~~~~~~ 417 (556)
T PRK11819 392 VDQSRDALDPNKTVWEEISGGLDIIK 417 (556)
T ss_pred EeCchhhcCCCCCHHHHHHhhccccc
Confidence 99986 78889999999988654433
No 308
>KOG0055|consensus
Probab=99.62 E-value=6.5e-16 Score=176.78 Aligned_cols=112 Identities=28% Similarity=0.453 Sum_probs=97.3
Q ss_pred ccEEEEeeEEEEcCC--ceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chHHhhcc
Q psy7411 347 SGIQLRGLTKIYKTG--KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMGKVRES 423 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~~--~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~~ir~~ 423 (474)
..++++|++++|+.. .++++++||++++||.++|+|||||||||++++|.+++.|++|+|.++|.|++. +.+.+|.+
T Consensus 349 g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~ 428 (1228)
T KOG0055|consen 349 GEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQ 428 (1228)
T ss_pred cceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhh
Confidence 458999999999632 379999999999999999999999999999999999999999999999999985 66778999
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHH
Q psy7411 424 LGLCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRAL 461 (474)
Q Consensus 424 IG~~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l 461 (474)
||+|.|+|+||.. |++||+.+.. .+.+++++.++.
T Consensus 429 iglV~QePvlF~~-tI~eNI~~G~--~dat~~~i~~a~ 463 (1228)
T KOG0055|consen 429 IGLVSQEPVLFAT-TIRENIRYGK--PDATREEIEEAA 463 (1228)
T ss_pred cCeeeechhhhcc-cHHHHHhcCC--CcccHHHHHHHH
Confidence 9999999999875 9999998742 123566666555
No 309
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.62 E-value=1.9e-15 Score=161.99 Aligned_cols=97 Identities=22% Similarity=0.231 Sum_probs=80.3
Q ss_pred ccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCC-CeeEEEECCeecCc--chHHhhcc
Q psy7411 347 SGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIP-TSGTAYIDGHDIWY--EMGKVRES 423 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~P-tsG~i~i~G~dI~~--~~~~ir~~ 423 (474)
..++++|+++.| +++.+++++||++++||+++|+||||||||||+++|+|+.+| ++|+|.++|+++.. .....|++
T Consensus 259 ~~l~~~~l~~~~-~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 337 (490)
T PRK10938 259 PRIVLNNGVVSY-NDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKH 337 (490)
T ss_pred ceEEEeceEEEE-CCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhh
Confidence 469999999999 456799999999999999999999999999999999998876 79999999987632 22345678
Q ss_pred eEEEcCCCCCCC--CCCHHHHHH
Q psy7411 424 LGLCPQYDLLFE--ELTVEDHLQ 444 (474)
Q Consensus 424 IG~~~Q~~~L~~--~LTV~E~L~ 444 (474)
+||++|++.++. ..++++++.
T Consensus 338 i~~v~q~~~~~~~~~~~~~~~~~ 360 (490)
T PRK10938 338 IGYVSSSLHLDYRVSTSVRNVIL 360 (490)
T ss_pred ceEECHHHHhhcccCCcHHHHHH
Confidence 999999876543 246666654
No 310
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.62 E-value=1.2e-15 Score=166.29 Aligned_cols=96 Identities=25% Similarity=0.368 Sum_probs=85.8
Q ss_pred ccEEEEeeEEEEcCC----ceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chHHhh
Q psy7411 347 SGIQLRGLTKIYKTG----KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMGKVR 421 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~~----~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~~ir 421 (474)
..++++|+++.|++. +++++++||++++||+++++|||||||||++++|+|+++|++|+|.++|.++.. ...+.|
T Consensus 336 ~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~ 415 (555)
T TIGR01194 336 DSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYR 415 (555)
T ss_pred ceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHH
Confidence 358999999999532 359999999999999999999999999999999999999999999999999975 456778
Q ss_pred cceEEEcCCCCCCCCCCHHHHH
Q psy7411 422 ESLGLCPQYDLLFEELTVEDHL 443 (474)
Q Consensus 422 ~~IG~~~Q~~~L~~~LTV~E~L 443 (474)
+.+++++|++.+|++ |+++|.
T Consensus 416 ~~i~~v~q~~~lf~~-ti~~n~ 436 (555)
T TIGR01194 416 DLFSAIFADFHLFDD-LIGPDE 436 (555)
T ss_pred hhCcEEccChhhhhh-hhhccc
Confidence 889999999999976 788874
No 311
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.61 E-value=2.4e-15 Score=163.80 Aligned_cols=94 Identities=30% Similarity=0.322 Sum_probs=82.3
Q ss_pred ccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEE
Q psy7411 347 SGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGL 426 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~ 426 (474)
..++++|+++.| +++.+++++||++++||+++|+||||||||||+++|+|+.+|++|+|.+++ ++ .+||
T Consensus 321 ~~l~~~~l~~~~-~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~~---------~i~~ 389 (552)
T TIGR03719 321 KVIEAENLSKGF-GDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-TV---------KLAY 389 (552)
T ss_pred eEEEEeeEEEEE-CCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-ce---------EEEE
Confidence 468999999999 456899999999999999999999999999999999999999999999843 21 5999
Q ss_pred EcCCC-CCCCCCCHHHHHHHHHhcCC
Q psy7411 427 CPQYD-LLFEELTVEDHLQFFAKGKE 451 (474)
Q Consensus 427 ~~Q~~-~L~~~LTV~E~L~~~~~lkg 451 (474)
++|++ .+++.+|+.||+.+.....+
T Consensus 390 v~q~~~~~~~~~tv~e~l~~~~~~~~ 415 (552)
T TIGR03719 390 VDQSRDALDPNKTVWEEISGGLDIIQ 415 (552)
T ss_pred EeCCccccCCCCcHHHHHHhhccccc
Confidence 99986 48888999999988654333
No 312
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.61 E-value=2.2e-15 Score=162.11 Aligned_cols=116 Identities=17% Similarity=0.269 Sum_probs=91.1
Q ss_pred ccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcc--hHHhhcce
Q psy7411 347 SGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYE--MGKVRESL 424 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~--~~~ir~~I 424 (474)
..++++|+++ .+++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++... ....|+.+
T Consensus 256 ~~l~~~~l~~------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i 329 (501)
T PRK10762 256 VRLKVDNLSG------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGI 329 (501)
T ss_pred cEEEEeCccc------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCC
Confidence 3588899874 379999999999999999999999999999999999999999999999988532 22356679
Q ss_pred EEEcCCC---CCCCCCCHHHHHHHHHh--cC---C-CCHHHHHHHHHHHHhHh
Q psy7411 425 GLCPQYD---LLFEELTVEDHLQFFAK--GK---E-FNGITYGRALLLMMSYV 468 (474)
Q Consensus 425 G~~~Q~~---~L~~~LTV~E~L~~~~~--lk---g-~~~~~~~~~l~~~~~~~ 468 (474)
||+||++ .+++.+|+.||+.+... .. + .+.++..+++++++..+
T Consensus 330 ~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 382 (501)
T PRK10762 330 VYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLF 382 (501)
T ss_pred EEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhc
Confidence 9999995 57888999999987421 11 2 23334445566666553
No 313
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.61 E-value=8.6e-16 Score=143.75 Aligned_cols=79 Identities=34% Similarity=0.609 Sum_probs=70.2
Q ss_pred EEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chHHhhcceEEEc
Q psy7411 350 QLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMGKVRESLGLCP 428 (474)
Q Consensus 350 ~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~~ir~~IG~~~ 428 (474)
+++|+++.|+ ++.+++++||++.+||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ...+.++.++|++
T Consensus 1 ~~~~l~~~~~-~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~ 79 (180)
T cd03214 1 EVENLSVGYG-GRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVP 79 (180)
T ss_pred CeeEEEEEEC-CeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHH
Confidence 3689999994 5689999999999999999999999999999999999999999999999998863 3345566799999
Q ss_pred C
Q psy7411 429 Q 429 (474)
Q Consensus 429 Q 429 (474)
|
T Consensus 80 q 80 (180)
T cd03214 80 Q 80 (180)
T ss_pred H
Confidence 8
No 314
>KOG0055|consensus
Probab=99.61 E-value=1.2e-15 Score=174.48 Aligned_cols=113 Identities=28% Similarity=0.447 Sum_probs=102.2
Q ss_pred cEEEEeeEEEEc--CCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chHHhhcce
Q psy7411 348 GIQLRGLTKIYK--TGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMGKVRESL 424 (474)
Q Consensus 348 ~I~i~~Lsk~y~--~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~~ir~~I 424 (474)
.|+++|++++|+ ...++++|+||++++||.++|+||+||||||.+.+|-.++.|++|.|.++|+|++. +.+.+|+++
T Consensus 987 ~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i 1066 (1228)
T KOG0055|consen 987 DIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQI 1066 (1228)
T ss_pred EEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhc
Confidence 499999999996 23579999999999999999999999999999999999999999999999999985 678899999
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy7411 425 GLCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLL 463 (474)
Q Consensus 425 G~~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~ 463 (474)
|.|.|+|.||.. |++|||.+. ..+ .+.+|+.++++.
T Consensus 1067 ~lVsQEP~LF~~-TIrENI~YG-~~~-vs~~eIi~Aak~ 1102 (1228)
T KOG0055|consen 1067 GLVSQEPVLFNG-TIRENIAYG-SEE-VSEEEIIEAAKL 1102 (1228)
T ss_pred ceeccCchhhcc-cHHHHHhcc-CCC-CCHHHHHHHHHH
Confidence 999999999986 999999988 333 788888877764
No 315
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.60 E-value=1.2e-15 Score=146.42 Aligned_cols=99 Identities=34% Similarity=0.476 Sum_probs=84.3
Q ss_pred EEEEeeEEEEc----CCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhh-cc
Q psy7411 349 IQLRGLTKIYK----TGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVR-ES 423 (474)
Q Consensus 349 I~i~~Lsk~y~----~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir-~~ 423 (474)
+.+.|++|.|. ..+++++++||++++|+++.++|+|||||||++++++|-.+|++|+|.|+|.|+.+....-| ..
T Consensus 2 i~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~ 81 (263)
T COG1101 2 ISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANL 81 (263)
T ss_pred cccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhH
Confidence 45677778764 34689999999999999999999999999999999999999999999999999986443333 34
Q ss_pred eEEEcCCCC--CCCCCCHHHHHHHHH
Q psy7411 424 LGLCPQYDL--LFEELTVEDHLQFFA 447 (474)
Q Consensus 424 IG~~~Q~~~--L~~~LTV~E~L~~~~ 447 (474)
++=|+|++. ..+.||++||+.+..
T Consensus 82 larVfQdp~~gt~~~lTieENl~la~ 107 (263)
T COG1101 82 LARVFQDPLAGTAPELTIEENLALAE 107 (263)
T ss_pred HHHHhcchhhCCcccccHHHHHHHHH
Confidence 777999974 689999999998864
No 316
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.60 E-value=3.4e-15 Score=178.82 Aligned_cols=111 Identities=27% Similarity=0.421 Sum_probs=97.2
Q ss_pred cEEEEeeEEEEcC-CceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chHHhhcceE
Q psy7411 348 GIQLRGLTKIYKT-GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMGKVRESLG 425 (474)
Q Consensus 348 ~I~i~~Lsk~y~~-~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~~ir~~IG 425 (474)
.++++||+.+|+. .+.+|+|+||++++||.+|++|++|||||||+++|.|+++ ++|+|.++|.|+.+ ..+.+|++++
T Consensus 1217 ~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is 1295 (1490)
T TIGR01271 1217 QMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFG 1295 (1490)
T ss_pred eEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceE
Confidence 5999999999953 3679999999999999999999999999999999999997 79999999999975 4677899999
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy7411 426 LCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLL 463 (474)
Q Consensus 426 ~~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~ 463 (474)
++||++.+|+. |++|||..+. ..+.+++.++++.
T Consensus 1296 ~IpQdp~LF~G-TIR~NLdp~~---~~tdeei~~aL~~ 1329 (1490)
T TIGR01271 1296 VIPQKVFIFSG-TFRKNLDPYE---QWSDEEIWKVAEE 1329 (1490)
T ss_pred EEeCCCccCcc-CHHHHhCccc---CCCHHHHHHHHHH
Confidence 99999999987 9999996542 3466677777664
No 317
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.60 E-value=3.7e-15 Score=165.78 Aligned_cols=90 Identities=20% Similarity=0.328 Sum_probs=81.0
Q ss_pred ccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEE
Q psy7411 347 SGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGL 426 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~ 426 (474)
..++++|+++.|++++++++++||++++||+++++||||||||||+++|+|+.+|++|++.+++ |++++|
T Consensus 450 ~~i~~~nv~~~~~~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~----------~~~i~~ 519 (659)
T TIGR00954 450 NGIKFENIPLVTPNGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA----------KGKLFY 519 (659)
T ss_pred CeEEEEeeEEECCCCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC----------CCcEEE
Confidence 3589999999995456799999999999999999999999999999999999999999998753 567999
Q ss_pred EcCCCCCCCCCCHHHHHHHHH
Q psy7411 427 CPQYDLLFEELTVEDHLQFFA 447 (474)
Q Consensus 427 ~~Q~~~L~~~LTV~E~L~~~~ 447 (474)
+||++.+++. |++||+.+..
T Consensus 520 v~Q~~~l~~~-tv~eni~~~~ 539 (659)
T TIGR00954 520 VPQRPYMTLG-TLRDQIIYPD 539 (659)
T ss_pred ECCCCCCCCc-CHHHHHhcCC
Confidence 9999999887 9999998753
No 318
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.60 E-value=4.6e-15 Score=164.28 Aligned_cols=91 Identities=23% Similarity=0.310 Sum_probs=80.9
Q ss_pred cccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceE
Q psy7411 346 ASGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLG 425 (474)
Q Consensus 346 ~~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG 425 (474)
...++++|+++.| +++.+++++||++++|++++|+||||||||||+++|+|+.+|++|+|.+ |.++ .+|
T Consensus 317 ~~~l~~~~l~~~~-~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~---------~i~ 385 (635)
T PRK11147 317 KIVFEMENVNYQI-DGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL---------EVA 385 (635)
T ss_pred CceEEEeeeEEEE-CCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc---------EEE
Confidence 3468999999999 5578999999999999999999999999999999999999999999998 5432 489
Q ss_pred EEcCCC-CCCCCCCHHHHHHHHH
Q psy7411 426 LCPQYD-LLFEELTVEDHLQFFA 447 (474)
Q Consensus 426 ~~~Q~~-~L~~~LTV~E~L~~~~ 447 (474)
|++|+. .+++.+||.||+.+..
T Consensus 386 y~~q~~~~l~~~~tv~e~l~~~~ 408 (635)
T PRK11147 386 YFDQHRAELDPEKTVMDNLAEGK 408 (635)
T ss_pred EEeCcccccCCCCCHHHHHHhhc
Confidence 999975 6889999999998753
No 319
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.59 E-value=6.2e-15 Score=148.85 Aligned_cols=120 Identities=22% Similarity=0.356 Sum_probs=99.7
Q ss_pred EEEEeeEEEEcC---CceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCC-C----CeeEEEECCeecCcc----
Q psy7411 349 IQLRGLTKIYKT---GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLII-P----TSGTAYIDGHDIWYE---- 416 (474)
Q Consensus 349 I~i~~Lsk~y~~---~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~-P----tsG~i~i~G~dI~~~---- 416 (474)
++++||+..|.. ..+||+|+||++++||++||+|.+||||||+.+++.|+++ | ++|+|.++|+++...
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 578999999853 2579999999999999999999999999999999999998 4 579999999988642
Q ss_pred hHHhh-cceEEEcCCC--CCCCCCCHHHHHHHHHhcCC-C-CHHHHHHHHHHHHhHh
Q psy7411 417 MGKVR-ESLGLCPQYD--LLFEELTVEDHLQFFAKGKE-F-NGITYGRALLLMMSYV 468 (474)
Q Consensus 417 ~~~ir-~~IG~~~Q~~--~L~~~LTV~E~L~~~~~lkg-~-~~~~~~~~l~~~~~~~ 468 (474)
++++| +.|+++||++ .|.|.+|+.+.+.-..+.++ . +++++.++..+++..|
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~V 138 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELV 138 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHc
Confidence 22455 4699999995 69999999999988777654 3 4667777787777765
No 320
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=6e-15 Score=142.83 Aligned_cols=122 Identities=20% Similarity=0.251 Sum_probs=98.6
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCC--CCCeeEEEECCeecCc--chHHhhcc
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLI--IPTSGTAYIDGHDIWY--EMGKVRES 423 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~--~PtsG~i~i~G~dI~~--~~~~ir~~ 423 (474)
.++++||...-.+++++|+++||++++||+.+++||||||||||.++|+|.. ++|+|+|.++|+||.. ..++.|+.
T Consensus 3 ~L~I~dLhv~v~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~G 82 (251)
T COG0396 3 MLEIKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAG 82 (251)
T ss_pred eeEEeeeEEEecCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcC
Confidence 5789999998844359999999999999999999999999999999999965 7899999999999974 34556777
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHHHhc-CCCC--HHHHHHHHHHHHhHhh
Q psy7411 424 LGLCPQYDLLFEELTVEDHLQFFAKG-KEFN--GITYGRALLLMMSYVW 469 (474)
Q Consensus 424 IG~~~Q~~~L~~~LTV~E~L~~~~~l-kg~~--~~~~~~~l~~~~~~~~ 469 (474)
+.+-+|.+.=.+..++.+-|...... ++.. ..+..+++.+-+..+|
T Consensus 83 ifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~ 131 (251)
T COG0396 83 IFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLG 131 (251)
T ss_pred CEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcC
Confidence 99999999999999999999876443 2211 2455555555554444
No 321
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.59 E-value=4.6e-15 Score=159.25 Aligned_cols=93 Identities=17% Similarity=0.308 Sum_probs=80.4
Q ss_pred ccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcc--hHHhhcce
Q psy7411 347 SGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYE--MGKVRESL 424 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~--~~~ir~~I 424 (474)
..++++|+++.+ +.+++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++... ....++.+
T Consensus 249 ~~i~~~~l~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 325 (491)
T PRK10982 249 VILEVRNLTSLR---QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGF 325 (491)
T ss_pred cEEEEeCccccc---CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCC
Confidence 468999999874 3599999999999999999999999999999999999999999999999988532 22346679
Q ss_pred EEEcCCC---CCCCCCCHHHH
Q psy7411 425 GLCPQYD---LLFEELTVEDH 442 (474)
Q Consensus 425 G~~~Q~~---~L~~~LTV~E~ 442 (474)
||+||+. .+++++|+.+|
T Consensus 326 ~~~~q~~~~~~~~~~~~~~~~ 346 (491)
T PRK10982 326 ALVTEERRSTGIYAYLDIGFN 346 (491)
T ss_pred EEcCCchhhCCcccCCcHHHh
Confidence 9999984 47888888777
No 322
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.59 E-value=3.7e-15 Score=160.46 Aligned_cols=94 Identities=27% Similarity=0.446 Sum_probs=81.4
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc--chHHhhcceE
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY--EMGKVRESLG 425 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~--~~~~ir~~IG 425 (474)
.++++|++. +.+++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. .....++.++
T Consensus 257 ~l~~~~~~~-----~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 331 (501)
T PRK11288 257 RLRLDGLKG-----PGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIM 331 (501)
T ss_pred EEEEecccc-----CCcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCE
Confidence 478888872 248999999999999999999999999999999999999999999999998753 2234567899
Q ss_pred EEcCCC---CCCCCCCHHHHHHHH
Q psy7411 426 LCPQYD---LLFEELTVEDHLQFF 446 (474)
Q Consensus 426 ~~~Q~~---~L~~~LTV~E~L~~~ 446 (474)
|+||++ .+++.+|+.||+.+.
T Consensus 332 ~~~q~~~~~~~~~~~tv~e~l~~~ 355 (501)
T PRK11288 332 LCPEDRKAEGIIPVHSVADNINIS 355 (501)
T ss_pred EcCcCHhhCCCcCCCCHHHHhccc
Confidence 999985 488899999999864
No 323
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.59 E-value=1.1e-14 Score=156.85 Aligned_cols=109 Identities=22% Similarity=0.313 Sum_probs=87.3
Q ss_pred ccEEEEeeEEEEcCC--ceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcce
Q psy7411 347 SGIQLRGLTKIYKTG--KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESL 424 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~~--~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~I 424 (474)
..++++||++.|+++ +.+|+++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.+.
T Consensus 20 ~mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~----------- 88 (549)
T PRK13545 20 PFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA----------- 88 (549)
T ss_pred ceeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee-----------
Confidence 458899999999543 4699999999999999999999999999999999999999999999999752
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhH
Q psy7411 425 GLCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSY 467 (474)
Q Consensus 425 G~~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~ 467 (474)
++.+...+.+.+|++||+.+.....+.+.++..+++++++.+
T Consensus 89 -~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~ 130 (549)
T PRK13545 89 -LIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEF 130 (549)
T ss_pred -eEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHH
Confidence 112234566778999999987665666666665555555544
No 324
>KOG0061|consensus
Probab=99.59 E-value=1e-14 Score=160.91 Aligned_cols=119 Identities=23% Similarity=0.312 Sum_probs=100.8
Q ss_pred cEEEEeeEEEEcC----CceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCC---CeeEEEECCeecCcchHHh
Q psy7411 348 GIQLRGLTKIYKT----GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIP---TSGTAYIDGHDIWYEMGKV 420 (474)
Q Consensus 348 ~I~i~~Lsk~y~~----~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~P---tsG~i~i~G~dI~~~~~~i 420 (474)
.+..++++..-++ .+++|+++|.++++||++|++||+||||||||++|+|-.+. .+|+|.+||+.. ..+..
T Consensus 25 ~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~--~~~~~ 102 (613)
T KOG0061|consen 25 KLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPR--DSRSF 102 (613)
T ss_pred eeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccC--chhhh
Confidence 3566677665543 37899999999999999999999999999999999998864 799999999654 34567
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHHhcCC---CCHHHHHHHHHHHHhHh
Q psy7411 421 RESLGLCPQYDLLFEELTVEDHLQFFAKGKE---FNGITYGRALLLMMSYV 468 (474)
Q Consensus 421 r~~IG~~~Q~~~L~~~LTV~E~L~~~~~lkg---~~~~~~~~~l~~~~~~~ 468 (474)
++..||+.|++.+++.+||+|++.+.+.++- .++++.++++++.+..+
T Consensus 103 ~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~L 153 (613)
T KOG0061|consen 103 RKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISEL 153 (613)
T ss_pred hheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHc
Confidence 8889999999999999999999999998763 36688888888887653
No 325
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.58 E-value=5.5e-15 Score=142.33 Aligned_cols=87 Identities=21% Similarity=0.287 Sum_probs=71.6
Q ss_pred eeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEE-ECCeecCcchHHhhcceEEEcCCCCCCCCCCHHH
Q psy7411 363 KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAY-IDGHDIWYEMGKVRESLGLCPQYDLLFEELTVED 441 (474)
Q Consensus 363 ~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~-i~G~dI~~~~~~ir~~IG~~~Q~~~L~~~LTV~E 441 (474)
.+++++||++++||+++|+||||||||||+++|+|+.+|++|++. ++|..+. +.+.+.+++.+|++|
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~------------~~~~~~l~~~ltv~e 68 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALP------------LGANSFILPGLTGEE 68 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceec------------cccccccCCcCcHHH
Confidence 379999999999999999999999999999999999999999997 6665331 224566889999999
Q ss_pred HHHHHHhcCCCCHHHHHHHH
Q psy7411 442 HLQFFAKGKEFNGITYGRAL 461 (474)
Q Consensus 442 ~L~~~~~lkg~~~~~~~~~l 461 (474)
|+.+....++.+.++..+++
T Consensus 69 nl~~~~~~~~~~~~~~~~~~ 88 (213)
T PRK15177 69 NARMMASLYGLDGDEFSHFC 88 (213)
T ss_pred HHHHHHHHcCCCHHHHHHHH
Confidence 99998877776655544443
No 326
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.58 E-value=2.6e-15 Score=179.22 Aligned_cols=98 Identities=24% Similarity=0.472 Sum_probs=88.0
Q ss_pred cEEEEeeEEEEcCC--ceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEE-CCeecCc-chHHhhcc
Q psy7411 348 GIQLRGLTKIYKTG--KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYI-DGHDIWY-EMGKVRES 423 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~--~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i-~G~dI~~-~~~~ir~~ 423 (474)
.++++||++.|++. +++++++||++++||+++|+||||||||||+++|+|+++|++|+|.+ +|.++.. +...+|++
T Consensus 382 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~ 461 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSK 461 (1466)
T ss_pred cEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHh
Confidence 58999999999532 46999999999999999999999999999999999999999999999 5688753 45567889
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHH
Q psy7411 424 LGLCPQYDLLFEELTVEDHLQFF 446 (474)
Q Consensus 424 IG~~~Q~~~L~~~LTV~E~L~~~ 446 (474)
+|+|+|++.+|+. |++||+.+.
T Consensus 462 Ig~V~Q~~~LF~~-TI~eNI~~g 483 (1466)
T PTZ00265 462 IGVVSQDPLLFSN-SIKNNIKYS 483 (1466)
T ss_pred ccEecccccchhc-cHHHHHHhc
Confidence 9999999999985 999999985
No 327
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.57 E-value=7.5e-15 Score=147.66 Aligned_cols=85 Identities=18% Similarity=0.460 Sum_probs=76.7
Q ss_pred cccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceE
Q psy7411 346 ASGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLG 425 (474)
Q Consensus 346 ~~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG 425 (474)
...++++|+++. .+.+++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++| .++
T Consensus 37 ~~~l~i~nls~~---~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g------------~i~ 101 (282)
T cd03291 37 DNNLFFSNLCLV---GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG------------RIS 101 (282)
T ss_pred CCeEEEEEEEEe---cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC------------EEE
Confidence 345899999985 25799999999999999999999999999999999999999999999987 289
Q ss_pred EEcCCCCCCCCCCHHHHHHHH
Q psy7411 426 LCPQYDLLFEELTVEDHLQFF 446 (474)
Q Consensus 426 ~~~Q~~~L~~~LTV~E~L~~~ 446 (474)
|++|++.+++. |++||+.+.
T Consensus 102 yv~q~~~l~~~-tv~enl~~~ 121 (282)
T cd03291 102 FSSQFSWIMPG-TIKENIIFG 121 (282)
T ss_pred EEeCccccccc-CHHHHhhcc
Confidence 99999988875 999999864
No 328
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.57 E-value=1.1e-14 Score=132.16 Aligned_cols=70 Identities=31% Similarity=0.534 Sum_probs=63.4
Q ss_pred EEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEEEc
Q psy7411 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCP 428 (474)
Q Consensus 349 I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~~ 428 (474)
++++|+++.|+ +..+++++||++++||+++++||||||||||+++|+|+.+|++|++.++|+ +.++|++
T Consensus 1 l~~~~l~~~~~-~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~----------~~i~~~~ 69 (144)
T cd03221 1 IELENLSKTYG-GKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST----------VKIGYFE 69 (144)
T ss_pred CEEEEEEEEEC-CceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe----------EEEEEEc
Confidence 36889999994 467999999999999999999999999999999999999999999999984 3577887
Q ss_pred C
Q psy7411 429 Q 429 (474)
Q Consensus 429 Q 429 (474)
|
T Consensus 70 ~ 70 (144)
T cd03221 70 Q 70 (144)
T ss_pred c
Confidence 7
No 329
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.56 E-value=5.6e-15 Score=138.94 Aligned_cols=121 Identities=25% Similarity=0.395 Sum_probs=92.1
Q ss_pred cEEEEeeEEEEc--------CCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHH
Q psy7411 348 GIQLRGLTKIYK--------TGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGK 419 (474)
Q Consensus 348 ~I~i~~Lsk~y~--------~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ 419 (474)
.++++||+|.|. ....||+.+||++++||..+++|.||+|||||.+||+|+.+||+|++.++|+...-...+
T Consensus 4 LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~ 83 (267)
T COG4167 4 LLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYS 83 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchH
Confidence 367899999874 224799999999999999999999999999999999999999999999999988643333
Q ss_pred hh-cceEEEcCCCC--CCCCCCHHHHHHHHHhcC-CCCHHHHHHHHHHHHhHh
Q psy7411 420 VR-ESLGLCPQYDL--LFEELTVEDHLQFFAKGK-EFNGITYGRALLLMMSYV 468 (474)
Q Consensus 420 ir-~~IG~~~Q~~~--L~~~LTV~E~L~~~~~lk-g~~~~~~~~~l~~~~~~~ 468 (474)
.| ++|-+++|+++ +.|.+.+.+-+....++. .+...+-.+++-+-++.|
T Consensus 84 ~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~V 136 (267)
T COG4167 84 FRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMV 136 (267)
T ss_pred hhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHh
Confidence 33 56999999974 677777777666654443 344444444444444433
No 330
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.56 E-value=6e-15 Score=134.91 Aligned_cols=113 Identities=24% Similarity=0.356 Sum_probs=93.9
Q ss_pred EEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCC---eeEEEECCeecCcchHHhhcceE
Q psy7411 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPT---SGTAYIDGHDIWYEMGKVRESLG 425 (474)
Q Consensus 349 I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~Pt---sG~i~i~G~dI~~~~~~ir~~IG 425 (474)
+.++|++.+- ++.-.+-++|++|.+|||+.++||+|||||||+.-+.|.+.+. +|++.++++++.. ....+|++|
T Consensus 3 l~l~nvsl~l-~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~-lPa~qRq~G 80 (213)
T COG4136 3 LCLKNVSLRL-PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDM-LPAAQRQIG 80 (213)
T ss_pred eeeeeeeecC-CCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccc-cchhhhhee
Confidence 5678888777 4567999999999999999999999999999999999987764 7999999999854 334577899
Q ss_pred EEcCCCCCCCCCCHHHHHHHH--HhcCCCCH-HHHHHHHHH
Q psy7411 426 LCPQYDLLFEELTVEDHLQFF--AKGKEFNG-ITYGRALLL 463 (474)
Q Consensus 426 ~~~Q~~~L~~~LTV~E~L~~~--~~lkg~~~-~~~~~~l~~ 463 (474)
+.+|++-||++++|.+|+.|. +.+||--+ +.+.++|++
T Consensus 81 iLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~ 121 (213)
T COG4136 81 ILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALER 121 (213)
T ss_pred eeecccccccccccccceEEecCcccccHHHHhhHHHHHHH
Confidence 999999999999999999874 56787533 335555554
No 331
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=2.8e-15 Score=159.11 Aligned_cols=112 Identities=28% Similarity=0.410 Sum_probs=96.1
Q ss_pred cEEEEeeEEEEcCCc-eeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcch-HHhhcceE
Q psy7411 348 GIQLRGLTKIYKTGK-KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEM-GKVRESLG 425 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~-~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~-~~ir~~IG 425 (474)
.++++|++++|++++ ++++|+||++++||.++++|++||||||+++.|+|..+|++|+|..+|.++..-. ..+|+.++
T Consensus 336 ~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~ 415 (573)
T COG4987 336 ALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETIS 415 (573)
T ss_pred eeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHh
Confidence 689999999997544 7999999999999999999999999999999999999999999999999997533 34788899
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHH
Q psy7411 426 LCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALL 462 (474)
Q Consensus 426 ~~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~ 462 (474)
+++|...+|.+ |+++|+.+...- .+.+++.+.++
T Consensus 416 vl~Qr~hlF~~-Tlr~NL~lA~~~--AsDEel~~aL~ 449 (573)
T COG4987 416 VLTQRVHLFSG-TLRDNLRLANPD--ASDEELWAALQ 449 (573)
T ss_pred hhccchHHHHH-HHHHHHhhcCCC--CCHHHHHHHHH
Confidence 99999999987 999999885432 45555555443
No 332
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.55 E-value=2e-14 Score=155.29 Aligned_cols=93 Identities=20% Similarity=0.282 Sum_probs=79.9
Q ss_pred ccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcc-h-HHhhcce
Q psy7411 347 SGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYE-M-GKVRESL 424 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~-~-~~ir~~I 424 (474)
..++++|+++ .+++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++... . ...++.+
T Consensus 267 ~~l~~~~l~~------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 340 (510)
T PRK15439 267 PVLTVEDLTG------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGL 340 (510)
T ss_pred ceEEEeCCCC------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCc
Confidence 4688999883 269999999999999999999999999999999999999999999999988532 2 2245679
Q ss_pred EEEcCCC---CCCCCCCHHHHHHH
Q psy7411 425 GLCPQYD---LLFEELTVEDHLQF 445 (474)
Q Consensus 425 G~~~Q~~---~L~~~LTV~E~L~~ 445 (474)
+|+||++ .+++.+|+.||+..
T Consensus 341 ~~v~q~~~~~~l~~~~t~~~~l~~ 364 (510)
T PRK15439 341 VYLPEDRQSSGLYLDAPLAWNVCA 364 (510)
T ss_pred EECCCChhhCCccCCCcHHHHHHh
Confidence 9999984 58888999999864
No 333
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.55 E-value=3.2e-14 Score=152.82 Aligned_cols=121 Identities=24% Similarity=0.314 Sum_probs=102.8
Q ss_pred cEEEEeeEEEEcC---CceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCC----eeEEEECCeecCc----c
Q psy7411 348 GIQLRGLTKIYKT---GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPT----SGTAYIDGHDIWY----E 416 (474)
Q Consensus 348 ~I~i~~Lsk~y~~---~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~Pt----sG~i~i~G~dI~~----~ 416 (474)
.++++||++.|.. ..++|+|+||++.+||++||+|.+||||||+.++|.|++++. +|+|.++|+++.. .
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 6899999999952 236999999999999999999999999999999999999987 8999999998753 2
Q ss_pred hHHhh-cceEEEcCCC--CCCCCCCHHHHHHHHHhcCC-CCHHHHHHHHHHHHhHh
Q psy7411 417 MGKVR-ESLGLCPQYD--LLFEELTVEDHLQFFAKGKE-FNGITYGRALLLMMSYV 468 (474)
Q Consensus 417 ~~~ir-~~IG~~~Q~~--~L~~~LTV~E~L~~~~~lkg-~~~~~~~~~l~~~~~~~ 468 (474)
++++| +.|+|+||++ .|.|.+|+.+++.-....++ .+.++..++..+++..|
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~V 140 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQV 140 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHc
Confidence 34445 5699999995 57788999999988777766 56888888888888765
No 334
>KOG0054|consensus
Probab=99.54 E-value=1.2e-14 Score=169.48 Aligned_cols=113 Identities=27% Similarity=0.412 Sum_probs=101.1
Q ss_pred ccEEEEeeEEEEcCC-ceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chHHhhcce
Q psy7411 347 SGIQLRGLTKIYKTG-KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMGKVRESL 424 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~~-~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~~ir~~I 424 (474)
..|+++|++.+|+.+ ..+|+++|++|++||.+|++|+.|||||||+++|-++.+|++|+|.|||.|+.+ ...++|+++
T Consensus 1137 G~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrl 1216 (1381)
T KOG0054|consen 1137 GEIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRL 1216 (1381)
T ss_pred CeEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcC
Confidence 359999999999633 579999999999999999999999999999999999999999999999999985 678899999
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy7411 425 GLCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLL 463 (474)
Q Consensus 425 G~~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~ 463 (474)
+++||+++||.. |+|.||.=+ ...+.++++++||.
T Consensus 1217 sIIPQdPvLFsG-TvR~NLDPf---~e~sD~~IW~ALe~ 1251 (1381)
T KOG0054|consen 1217 SIIPQDPVLFSG-TVRFNLDPF---DEYSDDEIWEALER 1251 (1381)
T ss_pred eeeCCCCceecC-ccccccCcc---cccCHHHHHHHHHH
Confidence 999999999998 999999643 33467788888875
No 335
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.54 E-value=2.4e-14 Score=170.55 Aligned_cols=90 Identities=24% Similarity=0.266 Sum_probs=79.7
Q ss_pred CceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCC----CCCeeEEEECCeecCcchHHhhcceEEEcCCCCCCCC
Q psy7411 361 GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLI----IPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEE 436 (474)
Q Consensus 361 ~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~----~PtsG~i~i~G~dI~~~~~~ir~~IG~~~Q~~~L~~~ 436 (474)
.+++|+|+|+++++||+++|+||||||||||+|+|+|+. +|++|+|.++|+++.....+.|+.++|++|++.+++.
T Consensus 73 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred cceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCC
Confidence 467999999999999999999999999999999999986 5799999999998753333456679999999999999
Q ss_pred CCHHHHHHHHHhcC
Q psy7411 437 LTVEDHLQFFAKGK 450 (474)
Q Consensus 437 LTV~E~L~~~~~lk 450 (474)
+||+|++.+.++++
T Consensus 153 lTV~E~l~f~~~~~ 166 (1394)
T TIGR00956 153 LTVGETLDFAARCK 166 (1394)
T ss_pred CCHHHHHHHHHHhC
Confidence 99999999977654
No 336
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.53 E-value=2.4e-14 Score=141.16 Aligned_cols=76 Identities=34% Similarity=0.485 Sum_probs=65.2
Q ss_pred ceeeeeeeeEEe-----CCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEEEcCCCCCCCC
Q psy7411 362 KKAVDNLTLDMY-----QNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEE 436 (474)
Q Consensus 362 ~~aL~~lsL~i~-----~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~~Q~~~L~~~ 436 (474)
.+.+++++|++. +||+++|+||||||||||+++|+|+.+|++|++.++|. .++|++|+......
T Consensus 7 ~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~-----------~i~~~~q~~~~~~~ 75 (246)
T cd03237 7 KKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD-----------TVSYKPQYIKADYE 75 (246)
T ss_pred ccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc-----------eEEEecccccCCCC
Confidence 345666666665 79999999999999999999999999999999999874 48999999877778
Q ss_pred CCHHHHHHHHHh
Q psy7411 437 LTVEDHLQFFAK 448 (474)
Q Consensus 437 LTV~E~L~~~~~ 448 (474)
+||.|++.....
T Consensus 76 ~tv~e~l~~~~~ 87 (246)
T cd03237 76 GTVRDLLSSITK 87 (246)
T ss_pred CCHHHHHHHHhh
Confidence 899999976543
No 337
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.53 E-value=1.6e-14 Score=152.53 Aligned_cols=99 Identities=25% Similarity=0.452 Sum_probs=90.0
Q ss_pred cEEEEeeEEEEcC-CceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chHHhhcceE
Q psy7411 348 GIQLRGLTKIYKT-GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMGKVRESLG 425 (474)
Q Consensus 348 ~I~i~~Lsk~y~~-~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~~ir~~IG 425 (474)
.+.+++++..-++ .+++++++||++.+||..|++||+|||||||.|+|.|..+|++|.|+++|.++.. +.++.-++||
T Consensus 334 ~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiG 413 (580)
T COG4618 334 ALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIG 413 (580)
T ss_pred eeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccC
Confidence 5788998886543 4689999999999999999999999999999999999999999999999999974 6677889999
Q ss_pred EEcCCCCCCCCCCHHHHHHHHH
Q psy7411 426 LCPQYDLLFEELTVEDHLQFFA 447 (474)
Q Consensus 426 ~~~Q~~~L~~~LTV~E~L~~~~ 447 (474)
|.||+-.||+. ||.|||.-+.
T Consensus 414 YLPQdVeLF~G-TIaeNIaRf~ 434 (580)
T COG4618 414 YLPQDVELFDG-TIAENIARFG 434 (580)
T ss_pred cCcccceecCC-cHHHHHHhcc
Confidence 99999999998 9999998664
No 338
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.53 E-value=1.6e-14 Score=143.23 Aligned_cols=93 Identities=24% Similarity=0.307 Sum_probs=74.8
Q ss_pred EeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEE-----------ECCeecCcchHHh
Q psy7411 352 RGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAY-----------IDGHDIWYEMGKV 420 (474)
Q Consensus 352 ~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~-----------i~G~dI~~~~~~i 420 (474)
.+++|+|++++.++++++ .+.+||+++|+||||||||||+++|+|+++|++|+|. ++|+++.....+.
T Consensus 4 ~~~~~~y~~~~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~ 82 (255)
T cd03236 4 DEPVHRYGPNSFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKL 82 (255)
T ss_pred cCcceeecCcchhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHh
Confidence 368899954446999999 4999999999999999999999999999999999996 7787775322222
Q ss_pred h---cceEEEcCCCCCCCCCCHHHHHHHH
Q psy7411 421 R---ESLGLCPQYDLLFEELTVEDHLQFF 446 (474)
Q Consensus 421 r---~~IG~~~Q~~~L~~~LTV~E~L~~~ 446 (474)
+ ..+++++|+..+++. ++.+++...
T Consensus 83 ~~~~~~i~~~~~~~~~~~~-~~~~~i~~~ 110 (255)
T cd03236 83 LEGDVKVIVKPQYVDLIPK-AVKGKVGEL 110 (255)
T ss_pred hhcccceeeecchhccCch-HHHHHHHHH
Confidence 2 247899999888774 788887664
No 339
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.53 E-value=3.8e-14 Score=129.38 Aligned_cols=78 Identities=40% Similarity=0.704 Sum_probs=69.8
Q ss_pred EEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chHHhhcceEEEcC
Q psy7411 351 LRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMGKVRESLGLCPQ 429 (474)
Q Consensus 351 i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~~ir~~IG~~~Q 429 (474)
++++++.|+ ++.+++++++++++||+++|+|+|||||||++++|+|+++|++|+++++|.++.. ...+.++.++|++|
T Consensus 2 ~~~~~~~~~-~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~q 80 (157)
T cd00267 2 IENLSFRYG-GRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQ 80 (157)
T ss_pred eEEEEEEeC-CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEee
Confidence 578999994 4689999999999999999999999999999999999999999999999998754 23456677999999
No 340
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.51 E-value=7e-14 Score=155.04 Aligned_cols=88 Identities=27% Similarity=0.407 Sum_probs=76.5
Q ss_pred cccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceE
Q psy7411 346 ASGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLG 425 (474)
Q Consensus 346 ~~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG 425 (474)
...++++|+++.| +++.+++++||++.+||+++|+||||||||||+++|+|+.+|++|+|.+++. ..+|
T Consensus 310 ~~~l~~~~l~~~y-~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~----------~~ig 378 (638)
T PRK10636 310 NPLLKMEKVSAGY-GDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG----------IKLG 378 (638)
T ss_pred CceEEEEeeEEEe-CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC----------EEEE
Confidence 3468999999999 5578999999999999999999999999999999999999999999998641 2589
Q ss_pred EEcCCC--CCCCCCCHHHHHH
Q psy7411 426 LCPQYD--LLFEELTVEDHLQ 444 (474)
Q Consensus 426 ~~~Q~~--~L~~~LTV~E~L~ 444 (474)
|++|+. .+.+..|+.+++.
T Consensus 379 y~~Q~~~~~l~~~~~~~~~~~ 399 (638)
T PRK10636 379 YFAQHQLEFLRADESPLQHLA 399 (638)
T ss_pred EecCcchhhCCccchHHHHHH
Confidence 999974 4566778888764
No 341
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.51 E-value=4.8e-14 Score=136.37 Aligned_cols=73 Identities=30% Similarity=0.388 Sum_probs=63.9
Q ss_pred eEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEEEcCCCCCC--CCCCHHHHHHHH
Q psy7411 370 LDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLF--EELTVEDHLQFF 446 (474)
Q Consensus 370 L~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~~Q~~~L~--~~LTV~E~L~~~ 446 (474)
|++++||+++|+|+||||||||+++|+|+.+|++|++.++|+++. +.++.++|++|++.++ ..+|+.||+.+.
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~----~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~ 75 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG----KGWRHIGYVPQRHEFAWDFPISVAHTVMSG 75 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch----HhhCcEEEecccccccCCCCccHHHHHHhc
Confidence 578899999999999999999999999999999999999998763 3456799999998764 347999999874
No 342
>PRK13409 putative ATPase RIL; Provisional
Probab=99.51 E-value=8.2e-14 Score=153.19 Aligned_cols=86 Identities=26% Similarity=0.347 Sum_probs=77.9
Q ss_pred ccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEE
Q psy7411 347 SGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGL 426 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~ 426 (474)
..++++|+++.|+ +. .++++|+++++||+++|+||||||||||+++|+|+.+|++|++.++ ..+||
T Consensus 339 ~~l~~~~ls~~~~-~~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~------------~~i~y 404 (590)
T PRK13409 339 TLVEYPDLTKKLG-DF-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE------------LKISY 404 (590)
T ss_pred eEEEEcceEEEEC-CE-EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe------------eeEEE
Confidence 4689999999994 43 5999999999999999999999999999999999999999999875 14899
Q ss_pred EcCCCCCCCCCCHHHHHHHH
Q psy7411 427 CPQYDLLFEELTVEDHLQFF 446 (474)
Q Consensus 427 ~~Q~~~L~~~LTV~E~L~~~ 446 (474)
+||+..+++.+||+|++.+.
T Consensus 405 ~~Q~~~~~~~~tv~e~l~~~ 424 (590)
T PRK13409 405 KPQYIKPDYDGTVEDLLRSI 424 (590)
T ss_pred ecccccCCCCCcHHHHHHHH
Confidence 99998888899999999875
No 343
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.49 E-value=6.5e-14 Score=143.37 Aligned_cols=87 Identities=28% Similarity=0.400 Sum_probs=72.7
Q ss_pred EeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEEEcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHH
Q psy7411 380 LLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGR 459 (474)
Q Consensus 380 LLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~ 459 (474)
|+||||||||||+++|+|+.+|++|+|.++|+++.... ..++.+||++|++.+++.+||+||+.+..+.++.+.++..+
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~-~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~ 79 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVP-PHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKP 79 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCC-HHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHH
Confidence 58999999999999999999999999999999985422 23567999999999999999999999987666666666666
Q ss_pred HHHHHHhH
Q psy7411 460 ALLLMMSY 467 (474)
Q Consensus 460 ~l~~~~~~ 467 (474)
++++++..
T Consensus 80 ~~~~~l~~ 87 (325)
T TIGR01187 80 RVLEALRL 87 (325)
T ss_pred HHHHHHHH
Confidence 66666654
No 344
>PLN03140 ABC transporter G family member; Provisional
Probab=99.49 E-value=4e-14 Score=168.84 Aligned_cols=89 Identities=24% Similarity=0.302 Sum_probs=80.3
Q ss_pred CceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCC---eeEEEECCeecCcchHHhhcceEEEcCCCCCCCCC
Q psy7411 361 GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPT---SGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEEL 437 (474)
Q Consensus 361 ~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~Pt---sG~i~i~G~dI~~~~~~ir~~IG~~~Q~~~L~~~L 437 (474)
++.+|+|+|+.+++||+++|+||||||||||+++|+|+.+|+ +|+|.++|+++... ..|+.++|++|++.+++.+
T Consensus 177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~--~~~~~i~yv~Q~d~~~~~l 254 (1470)
T PLN03140 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEF--VPRKTSAYISQNDVHVGVM 254 (1470)
T ss_pred cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhh--cccceeEEecccccCCCcC
Confidence 367999999999999999999999999999999999999998 99999999987432 1267799999999999999
Q ss_pred CHHHHHHHHHhcCC
Q psy7411 438 TVEDHLQFFAKGKE 451 (474)
Q Consensus 438 TV~E~L~~~~~lkg 451 (474)
||+|++.|.++.++
T Consensus 255 TV~EtL~f~a~~~~ 268 (1470)
T PLN03140 255 TVKETLDFSARCQG 268 (1470)
T ss_pred cHHHHHHHHHHhcC
Confidence 99999999887664
No 345
>PLN03073 ABC transporter F family; Provisional
Probab=99.49 E-value=1.6e-13 Score=153.96 Aligned_cols=86 Identities=22% Similarity=0.381 Sum_probs=73.3
Q ss_pred ccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEE
Q psy7411 347 SGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGL 426 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~ 426 (474)
..++++|+++.|++.+.+++++||++++|++++|+||||||||||+++|+|+.+|++|+|.+++ +..+||
T Consensus 507 ~~L~~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~----------~~~igy 576 (718)
T PLN03073 507 PIISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA----------KVRMAV 576 (718)
T ss_pred ceEEEEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC----------ceeEEE
Confidence 4689999999995445799999999999999999999999999999999999999999998864 235999
Q ss_pred EcCCCCCCCCCCHHHHHH
Q psy7411 427 CPQYDLLFEELTVEDHLQ 444 (474)
Q Consensus 427 ~~Q~~~L~~~LTV~E~L~ 444 (474)
++|++. +.+++.++..
T Consensus 577 v~Q~~~--~~l~~~~~~~ 592 (718)
T PLN03073 577 FSQHHV--DGLDLSSNPL 592 (718)
T ss_pred Eecccc--ccCCcchhHH
Confidence 999852 4456666643
No 346
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.48 E-value=1.4e-13 Score=152.64 Aligned_cols=72 Identities=28% Similarity=0.303 Sum_probs=64.4
Q ss_pred EEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEEEc
Q psy7411 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCP 428 (474)
Q Consensus 349 I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~~ 428 (474)
++++||+|.| +++.+++++||++.+||++||+||||||||||+++|+|+.+|++|+|.++|.. .+|+++
T Consensus 2 i~i~nls~~~-g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~----------~i~~~~ 70 (638)
T PRK10636 2 IVFSSLQIRR-GVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW----------QLAWVN 70 (638)
T ss_pred EEEEEEEEEe-CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC----------EEEEEe
Confidence 6899999999 56789999999999999999999999999999999999999999999998742 266777
Q ss_pred CCC
Q psy7411 429 QYD 431 (474)
Q Consensus 429 Q~~ 431 (474)
|+.
T Consensus 71 q~~ 73 (638)
T PRK10636 71 QET 73 (638)
T ss_pred cCC
Confidence 653
No 347
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.48 E-value=1.2e-13 Score=136.99 Aligned_cols=67 Identities=34% Similarity=0.567 Sum_probs=62.0
Q ss_pred cEEEEeeEEEEcCC--------ceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecC
Q psy7411 348 GIQLRGLTKIYKTG--------KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIW 414 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~--------~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~ 414 (474)
.++++||+|.|..+ ..|++||||++++||++||+|.|||||||+-|+|+||.+||+|+|.++|+++.
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~ 78 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDIT 78 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchh
Confidence 57899999999521 48999999999999999999999999999999999999999999999999975
No 348
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.47 E-value=8.8e-14 Score=131.01 Aligned_cols=68 Identities=26% Similarity=0.318 Sum_probs=60.0
Q ss_pred EeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEEEcCCC
Q psy7411 352 RGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYD 431 (474)
Q Consensus 352 ~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~~Q~~ 431 (474)
.|++|.| +++.++++. +++++||+++|+||||||||||+++|+|+.+|++|+|.++|.+ +++++|+.
T Consensus 4 ~~l~~~~-~~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~-----------i~~~~q~~ 70 (177)
T cd03222 4 PDCVKRY-GVFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT-----------PVYKPQYI 70 (177)
T ss_pred CCeEEEE-CCEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE-----------EEEEcccC
Confidence 4789999 567888884 9999999999999999999999999999999999999999864 56777764
Q ss_pred C
Q psy7411 432 L 432 (474)
Q Consensus 432 ~ 432 (474)
.
T Consensus 71 ~ 71 (177)
T cd03222 71 D 71 (177)
T ss_pred C
Confidence 3
No 349
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.46 E-value=9.8e-14 Score=135.59 Aligned_cols=98 Identities=29% Similarity=0.384 Sum_probs=85.0
Q ss_pred cccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-ch-HHhhcc
Q psy7411 346 ASGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EM-GKVRES 423 (474)
Q Consensus 346 ~~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~-~~ir~~ 423 (474)
...++++|++..| +++++|+++|++|++||--+++||||||||||+++++|..+|++|.+.+.|+..-+ +. .++|++
T Consensus 29 ~~li~l~~v~v~r-~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~ 107 (257)
T COG1119 29 EPLIELKNVSVRR-NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKR 107 (257)
T ss_pred cceEEecceEEEE-CCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHH
Confidence 4569999999999 67899999999999999999999999999999999999999999999999998763 33 789999
Q ss_pred eEEEcCC--CCCCCCCCHHHHHH
Q psy7411 424 LGLCPQY--DLLFEELTVEDHLQ 444 (474)
Q Consensus 424 IG~~~Q~--~~L~~~LTV~E~L~ 444 (474)
||+|.-. ....+..+|+|-+.
T Consensus 108 IG~vS~~L~~~~~~~~~v~dvVl 130 (257)
T COG1119 108 IGLVSSELHERFRVRETVRDVVL 130 (257)
T ss_pred hCccCHHHHhhcccccccceeee
Confidence 9999753 34445667777764
No 350
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.44 E-value=2.5e-13 Score=147.15 Aligned_cols=87 Identities=31% Similarity=0.359 Sum_probs=79.6
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEEE
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLC 427 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~ 427 (474)
.++++++++.| +.+++++++|+++.+|+.+||+|+|||||||||++|+|..+|++|+|...+. -++||+
T Consensus 3 ~i~~~~ls~~~-g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~----------~~v~~l 71 (530)
T COG0488 3 MITLENLSLAY-GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG----------LRVGYL 71 (530)
T ss_pred eEEEeeeEEee-CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC----------ceEEEe
Confidence 57899999999 6789999999999999999999999999999999999999999999987642 248999
Q ss_pred cCCCCCCCCCCHHHHHHH
Q psy7411 428 PQYDLLFEELTVEDHLQF 445 (474)
Q Consensus 428 ~Q~~~L~~~LTV~E~L~~ 445 (474)
+|++.+.+..||.+.+.-
T Consensus 72 ~Q~~~~~~~~tv~~~v~~ 89 (530)
T COG0488 72 SQEPPLDPEKTVLDYVIE 89 (530)
T ss_pred CCCCCcCCCccHHHHHHh
Confidence 999999999999998764
No 351
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.44 E-value=1.2e-13 Score=137.12 Aligned_cols=81 Identities=25% Similarity=0.415 Sum_probs=71.5
Q ss_pred eeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-----chHHhhcceEEEcCCCCCCCCCCHHH
Q psy7411 367 NLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-----EMGKVRESLGLCPQYDLLFEELTVED 441 (474)
Q Consensus 367 ~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-----~~~~ir~~IG~~~Q~~~L~~~LTV~E 441 (474)
+++|+.+...++++-|++||||||++||++||.+|+.|.|.++|+-+.. ....-++++|||||+..||+++||+.
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrg 95 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRG 95 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEec
Confidence 6788888889999999999999999999999999999999999987642 12234677999999999999999999
Q ss_pred HHHHHH
Q psy7411 442 HLQFFA 447 (474)
Q Consensus 442 ~L~~~~ 447 (474)
|+.|..
T Consensus 96 NL~YG~ 101 (352)
T COG4148 96 NLRYGM 101 (352)
T ss_pred chhhhh
Confidence 999864
No 352
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.42 E-value=5.9e-13 Score=160.03 Aligned_cols=87 Identities=18% Similarity=0.324 Sum_probs=79.3
Q ss_pred cEEEEeeEEEEcC-CceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEE
Q psy7411 348 GIQLRGLTKIYKT-GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGL 426 (474)
Q Consensus 348 ~I~i~~Lsk~y~~-~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~ 426 (474)
.++++|+++.|++ .+++++|+||++++||+++++||||||||||+++|+|+.+|++|++.++| +++|
T Consensus 636 ~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------------~i~y 703 (1522)
T TIGR00957 636 SITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG------------SVAY 703 (1522)
T ss_pred cEEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC------------EEEE
Confidence 5899999999953 35799999999999999999999999999999999999999999999986 4899
Q ss_pred EcCCCCCCCCCCHHHHHHHHH
Q psy7411 427 CPQYDLLFEELTVEDHLQFFA 447 (474)
Q Consensus 427 ~~Q~~~L~~~LTV~E~L~~~~ 447 (474)
|+|++.+++ .|++||+.+..
T Consensus 704 v~Q~~~l~~-~Ti~eNI~~g~ 723 (1522)
T TIGR00957 704 VPQQAWIQN-DSLRENILFGK 723 (1522)
T ss_pred EcCCccccC-CcHHHHhhcCC
Confidence 999998876 59999999753
No 353
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.41 E-value=6.2e-13 Score=147.38 Aligned_cols=62 Identities=31% Similarity=0.469 Sum_probs=58.8
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECC
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDG 410 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G 410 (474)
.++++|+++.| +++++++++||++++|++++|+||||||||||+++|+|+.+|++|+|.++|
T Consensus 3 ~l~i~~ls~~~-~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~ 64 (635)
T PRK11147 3 LISIHGAWLSF-SDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQ 64 (635)
T ss_pred EEEEeeEEEEe-CCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCC
Confidence 47899999999 557899999999999999999999999999999999999999999999986
No 354
>KOG0065|consensus
Probab=99.41 E-value=1e-11 Score=142.96 Aligned_cols=117 Identities=22% Similarity=0.227 Sum_probs=92.9
Q ss_pred EEEEeeEEEE---cCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCC--CCCeeEEEECCeecCcchHHhhcc
Q psy7411 349 IQLRGLTKIY---KTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLI--IPTSGTAYIDGHDIWYEMGKVRES 423 (474)
Q Consensus 349 I~i~~Lsk~y---~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~--~PtsG~i~i~G~dI~~~~~~ir~~ 423 (474)
...+|+.+.- ++.+++|+||+=-+++|-.+||+|+|||||||||++|+|=. -..+|+|.|+|.+... +..+|.
T Consensus 788 ~~w~dl~~~~~~qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q--~tF~R~ 865 (1391)
T KOG0065|consen 788 FYWVDLPYEMPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ--ETFARV 865 (1391)
T ss_pred EEEEeCCccccccccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch--hhhccc
Confidence 3445555432 14568999999999999999999999999999999999943 2357999999998753 467788
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhH
Q psy7411 424 LGLCPQYDLLFEELTVEDHLQFFAKGK---EFNGITYGRALLLMMSY 467 (474)
Q Consensus 424 IG~~~Q~~~L~~~LTV~E~L~~~~~lk---g~~~~~~~~~l~~~~~~ 467 (474)
+|||-|+|...+.+||+|-|.|-+.++ ..+..+..+-+|+.|.-
T Consensus 866 ~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~l 912 (1391)
T KOG0065|consen 866 SGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIEL 912 (1391)
T ss_pred cceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHH
Confidence 999999999999999999999998886 34455555666666543
No 355
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.40 E-value=3.6e-13 Score=125.53 Aligned_cols=121 Identities=17% Similarity=0.258 Sum_probs=100.1
Q ss_pred cEEEEeeEEEEc----CC--ceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCee--cC-----
Q psy7411 348 GIQLRGLTKIYK----TG--KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHD--IW----- 414 (474)
Q Consensus 348 ~I~i~~Lsk~y~----~~--~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~d--I~----- 414 (474)
.+.++|++|+|. ++ -++++++||+++.|||++|-||+|+||||+||+|-|-+.|++|+|.+.-+. +.
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~ 83 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAE 83 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccC
Confidence 367889999883 22 379999999999999999999999999999999999999999999986432 21
Q ss_pred -cchHHhh-cceEEEcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhHh
Q psy7411 415 -YEMGKVR-ESLGLCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSYV 468 (474)
Q Consensus 415 -~~~~~ir-~~IG~~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~~ 468 (474)
.+.-++| +.+||+.|.--..|..+..|-++-...-+|.+.+...++....++++
T Consensus 84 pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rL 139 (235)
T COG4778 84 PREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRL 139 (235)
T ss_pred hHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHc
Confidence 1222344 45999999987788888888888888889999999988888888764
No 356
>PRK13409 putative ATPase RIL; Provisional
Probab=99.40 E-value=3e-13 Score=148.83 Aligned_cols=92 Identities=25% Similarity=0.309 Sum_probs=72.1
Q ss_pred eeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEE-----------ECCeecCcchHHh-
Q psy7411 353 GLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAY-----------IDGHDIWYEMGKV- 420 (474)
Q Consensus 353 ~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~-----------i~G~dI~~~~~~i- 420 (474)
+++++|+++..+|++++ .+++||++||+||||||||||+++|+|+++|++|++. ++|+++.....++
T Consensus 78 ~~~~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~ 156 (590)
T PRK13409 78 EPVHRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLY 156 (590)
T ss_pred CceEEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHh
Confidence 37789954456999999 9999999999999999999999999999999999997 8898875422222
Q ss_pred --hcceEEEcCCCCCCCC---CCHHHHHHH
Q psy7411 421 --RESLGLCPQYDLLFEE---LTVEDHLQF 445 (474)
Q Consensus 421 --r~~IG~~~Q~~~L~~~---LTV~E~L~~ 445 (474)
+..+++.+|.....+. .||.|++..
T Consensus 157 ~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~ 186 (590)
T PRK13409 157 NGEIKVVHKPQYVDLIPKVFKGKVRELLKK 186 (590)
T ss_pred ccCcceeecccchhhhhhhhcchHHHHHHh
Confidence 2346666775444332 299999864
No 357
>PLN03232 ABC transporter C family member; Provisional
Probab=99.40 E-value=6.6e-13 Score=159.39 Aligned_cols=100 Identities=21% Similarity=0.418 Sum_probs=85.0
Q ss_pred cEEEEeeEEEEcC--CceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceE
Q psy7411 348 GIQLRGLTKIYKT--GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLG 425 (474)
Q Consensus 348 ~I~i~~Lsk~y~~--~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG 425 (474)
.++++|+++.|++ ++++|+|+||++++||.++++||+|||||||+++|.|+++|++|.+. .+|++++
T Consensus 614 ~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~-----------~~~~~Ia 682 (1495)
T PLN03232 614 AISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV-----------VIRGSVA 682 (1495)
T ss_pred cEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE-----------EecCcEE
Confidence 5899999999953 35799999999999999999999999999999999999999998663 3467899
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHH
Q psy7411 426 LCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALL 462 (474)
Q Consensus 426 ~~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~ 462 (474)
||+|++.+++. |++|||.+.. ..++++.+++++
T Consensus 683 yv~Q~p~Lf~g-TIreNI~fg~---~~~~e~~~~vl~ 715 (1495)
T PLN03232 683 YVPQVSWIFNA-TVRENILFGS---DFESERYWRAID 715 (1495)
T ss_pred EEcCccccccc-cHHHHhhcCC---ccCHHHHHHHHH
Confidence 99999999986 9999999864 235555555544
No 358
>PLN03130 ABC transporter C family member; Provisional
Probab=99.38 E-value=9.4e-13 Score=158.82 Aligned_cols=99 Identities=25% Similarity=0.473 Sum_probs=84.7
Q ss_pred cEEEEeeEEEEcC--CceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCe-eEEEECCeecCcchHHhhcce
Q psy7411 348 GIQLRGLTKIYKT--GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTS-GTAYIDGHDIWYEMGKVRESL 424 (474)
Q Consensus 348 ~I~i~~Lsk~y~~--~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~Pts-G~i~i~G~dI~~~~~~ir~~I 424 (474)
.++++|+++.|+. .+++|+|+||++++||.++++||+|||||||+++|.|.++|++ |++.+ |+++
T Consensus 614 ~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l------------~~~I 681 (1622)
T PLN03130 614 AISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI------------RGTV 681 (1622)
T ss_pred ceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE------------cCeE
Confidence 5899999999953 3579999999999999999999999999999999999999999 89873 5679
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHH
Q psy7411 425 GLCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALL 462 (474)
Q Consensus 425 G~~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~ 462 (474)
+||+|++.+++. |++|||.|... .++++.+++++
T Consensus 682 ayv~Q~p~Lfng-TIreNI~fg~~---~d~e~y~~vl~ 715 (1622)
T PLN03130 682 AYVPQVSWIFNA-TVRDNILFGSP---FDPERYERAID 715 (1622)
T ss_pred EEEcCccccCCC-CHHHHHhCCCc---ccHHHHHHHHH
Confidence 999999999986 99999998643 24455555444
No 359
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.37 E-value=3.9e-12 Score=131.64 Aligned_cols=119 Identities=24% Similarity=0.279 Sum_probs=99.0
Q ss_pred cccEEEEeeEEEEc----------CCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc
Q psy7411 346 ASGIQLRGLTKIYK----------TGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY 415 (474)
Q Consensus 346 ~~~I~i~~Lsk~y~----------~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~ 415 (474)
...++.++++..|. +..+||+++||++++||..|++|.+|||||||-++|.+|++++ |+|.+.|+++..
T Consensus 274 ~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~ 352 (534)
T COG4172 274 PVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDG 352 (534)
T ss_pred CceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccc
Confidence 45688899988884 1247999999999999999999999999999999999999887 999999999973
Q ss_pred ----chHHhhcceEEEcCCC--CCCCCCCHHHHHHHHHhcCC--CCHHHHHHHHHHHH
Q psy7411 416 ----EMGKVRESLGLCPQYD--LLFEELTVEDHLQFFAKGKE--FNGITYGRALLLMM 465 (474)
Q Consensus 416 ----~~~~ir~~IG~~~Q~~--~L~~~LTV~E~L~~~~~lkg--~~~~~~~~~l~~~~ 465 (474)
.+..+|+++-+|+|++ .|.|.+||.+-+.-....++ .+.++-.+++.+-+
T Consensus 353 ~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL 410 (534)
T COG4172 353 LSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEAL 410 (534)
T ss_pred cChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHH
Confidence 4666889999999997 58999999999998877765 56666544444433
No 360
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=6.8e-13 Score=137.72 Aligned_cols=98 Identities=23% Similarity=0.469 Sum_probs=90.5
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chHHhhcceEE
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMGKVRESLGL 426 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~~ir~~IG~ 426 (474)
.+.+.++++.|...+++++++|++++.|+.++++|++|+||||+++.|-.++.+++|.|.++|+|++. ....+|+.||+
T Consensus 262 ~v~F~~V~F~y~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~ 341 (497)
T COG5265 262 AVAFINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGI 341 (497)
T ss_pred eEEEEEEEeeccccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCc
Confidence 47889999999777899999999999999999999999999999999999999999999999999975 44568889999
Q ss_pred EcCCCCCCCCCCHHHHHHHH
Q psy7411 427 CPQYDLLFEELTVEDHLQFF 446 (474)
Q Consensus 427 ~~Q~~~L~~~LTV~E~L~~~ 446 (474)
+||+.+||.+ |...|+.+.
T Consensus 342 VPQDtvLFND-ti~yni~yg 360 (497)
T COG5265 342 VPQDTVLFND-TIAYNIKYG 360 (497)
T ss_pred Ccccceehhh-hHHHHHhcc
Confidence 9999999987 999998764
No 361
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.35 E-value=2.5e-12 Score=154.36 Aligned_cols=73 Identities=23% Similarity=0.488 Sum_probs=68.4
Q ss_pred ceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEEEcCCCCCCCCCCHHH
Q psy7411 362 KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVED 441 (474)
Q Consensus 362 ~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~~Q~~~L~~~LTV~E 441 (474)
+++++|+||++++||+++++||||||||||+++|+|+.+|++|+|.++| +++||+|++.+++. |++|
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g------------~iayv~Q~~~l~~~-Ti~e 505 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG------------RISFSPQTSWIMPG-TIKD 505 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC------------EEEEEeCCCccCCc-cHHH
Confidence 4689999999999999999999999999999999999999999999987 38999999999985 9999
Q ss_pred HHHHHH
Q psy7411 442 HLQFFA 447 (474)
Q Consensus 442 ~L~~~~ 447 (474)
|+.|..
T Consensus 506 NI~~g~ 511 (1490)
T TIGR01271 506 NIIFGL 511 (1490)
T ss_pred HHHhcc
Confidence 999764
No 362
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.33 E-value=7.4e-13 Score=136.52 Aligned_cols=92 Identities=28% Similarity=0.448 Sum_probs=81.2
Q ss_pred cccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecC-cchHHhhcce
Q psy7411 346 ASGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIW-YEMGKVRESL 424 (474)
Q Consensus 346 ~~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~-~~~~~ir~~I 424 (474)
-..++++|++..|....--|..+|+++++||++-++|.|||||||+++.|+||++|++|+|.++|+++. +..++.|+-.
T Consensus 320 ~~~lelrnvrfay~~~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~Lf 399 (546)
T COG4615 320 WKTLELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLF 399 (546)
T ss_pred ccceeeeeeeeccCcccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHH
Confidence 356999999999965446789999999999999999999999999999999999999999999999998 4678888877
Q ss_pred EEEcCCCCCCCCC
Q psy7411 425 GLCPQYDLLFEEL 437 (474)
Q Consensus 425 G~~~Q~~~L~~~L 437 (474)
.-++.+..||+.+
T Consensus 400 SavFsDyhLF~~l 412 (546)
T COG4615 400 SAVFSDYHLFDQL 412 (546)
T ss_pred HHHhhhHhhhHhh
Confidence 7788877777653
No 363
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.31 E-value=6e-12 Score=136.54 Aligned_cols=93 Identities=26% Similarity=0.348 Sum_probs=80.4
Q ss_pred ccccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcce
Q psy7411 345 NASGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESL 424 (474)
Q Consensus 345 ~~~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~I 424 (474)
....++++|+++.|++++.+++++||.+.+|+.+|++||||+|||||+++|+|...|.+|+|.+... -++
T Consensus 318 g~~vl~~~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~----------v~i 387 (530)
T COG0488 318 GKLVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET----------VKI 387 (530)
T ss_pred CCeeEEEeccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc----------eEE
Confidence 3567899999999965578999999999999999999999999999999999999999999987632 248
Q ss_pred EEEcCCC-CCCCCCCHHHHHHHHH
Q psy7411 425 GLCPQYD-LLFEELTVEDHLQFFA 447 (474)
Q Consensus 425 G~~~Q~~-~L~~~LTV~E~L~~~~ 447 (474)
||..|+. .+.++.|+.|++.-..
T Consensus 388 gyf~Q~~~~l~~~~t~~d~l~~~~ 411 (530)
T COG0488 388 GYFDQHRDELDPDKTVLEELSEGF 411 (530)
T ss_pred EEEEehhhhcCccCcHHHHHHhhC
Confidence 9999996 4557779999987654
No 364
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.30 E-value=3.7e-12 Score=110.74 Aligned_cols=75 Identities=17% Similarity=0.243 Sum_probs=63.0
Q ss_pred ceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchH-HhhcceEEEcCCCCCCCCCCHH
Q psy7411 362 KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMG-KVRESLGLCPQYDLLFEELTVE 440 (474)
Q Consensus 362 ~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~-~ir~~IG~~~Q~~~L~~~LTV~ 440 (474)
+.++++++|++++||+++|+||||||||||++++. +|++.+.|.|+..... +.++..+++||+ ++. .|++
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~-~ti~ 72 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLE-IRLR 72 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cch-hhHH
Confidence 57999999999999999999999999999999986 7999999999865333 345557777777 554 4999
Q ss_pred HHHHH
Q psy7411 441 DHLQF 445 (474)
Q Consensus 441 E~L~~ 445 (474)
|||.+
T Consensus 73 ~Ni~~ 77 (107)
T cd00820 73 LNIFL 77 (107)
T ss_pred hhcee
Confidence 99987
No 365
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.28 E-value=2.1e-11 Score=128.85 Aligned_cols=119 Identities=18% Similarity=0.314 Sum_probs=96.0
Q ss_pred EEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeec-C-cchHHh-hcceE
Q psy7411 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDI-W-YEMGKV-RESLG 425 (474)
Q Consensus 349 I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI-~-~~~~~i-r~~IG 425 (474)
+++++|+..-+++..+++++||++++|||+|+.|-.|-|.+.|+.+|+|+.+|.+|+|.++|+++ . ....+. +..+|
T Consensus 258 L~V~~L~v~~~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~G~~ 337 (501)
T COG3845 258 LEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLGLA 337 (501)
T ss_pred EEEeeeEeecCCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhcCCc
Confidence 78888887654446789999999999999999999999999999999999999999999999997 2 233443 45699
Q ss_pred EEcCC---CCCCCCCCHHHHHHHHHhc------CC-CCHHHHHHHHHHHHhH
Q psy7411 426 LCPQY---DLLFEELTVEDHLQFFAKG------KE-FNGITYGRALLLMMSY 467 (474)
Q Consensus 426 ~~~Q~---~~L~~~LTV~E~L~~~~~l------kg-~~~~~~~~~l~~~~~~ 467 (474)
++|.+ +.+-+++|+.||+.+...- +| .+.+++.+...+++..
T Consensus 338 ~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~ 389 (501)
T COG3845 338 YVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEE 389 (501)
T ss_pred cCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHH
Confidence 99987 4688999999999886442 23 4566777776666653
No 366
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.27 E-value=2.3e-11 Score=126.03 Aligned_cols=122 Identities=23% Similarity=0.340 Sum_probs=103.3
Q ss_pred ccEEEEeeEEEEc---CCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCC-----CeeEEEECCeecCc---
Q psy7411 347 SGIQLRGLTKIYK---TGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIP-----TSGTAYIDGHDIWY--- 415 (474)
Q Consensus 347 ~~I~i~~Lsk~y~---~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~P-----tsG~i~i~G~dI~~--- 415 (474)
+.++++||+..|+ +...|++++||++++||.++|+|.+|+|||-+.+.+.||++. -+|+|.++|+++-.
T Consensus 5 ~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se 84 (534)
T COG4172 5 PLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASE 84 (534)
T ss_pred cceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCH
Confidence 4589999999994 356899999999999999999999999999999999999875 36899999999863
Q ss_pred -chHHhhc-ceEEEcCCC--CCCCCCCHHHHHHHHHhc-CCCCHHHHHHHHHHHHhHh
Q psy7411 416 -EMGKVRE-SLGLCPQYD--LLFEELTVEDHLQFFAKG-KEFNGITYGRALLLMMSYV 468 (474)
Q Consensus 416 -~~~~ir~-~IG~~~Q~~--~L~~~LTV~E~L~~~~~l-kg~~~~~~~~~l~~~~~~~ 468 (474)
.++.+|. +|++++|++ .|.|-.|+...+.-..+. +|+++++++++..+++..|
T Consensus 85 ~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~V 142 (534)
T COG4172 85 RQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELV 142 (534)
T ss_pred HHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 3445553 599999997 588888999888776555 5789999999999988765
No 367
>PLN03073 ABC transporter F family; Provisional
Probab=99.26 E-value=4.2e-12 Score=142.57 Aligned_cols=67 Identities=16% Similarity=0.270 Sum_probs=58.7
Q ss_pred ccccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCC---CCCeeEEEECCee
Q psy7411 345 NASGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLI---IPTSGTAYIDGHD 412 (474)
Q Consensus 345 ~~~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~---~PtsG~i~i~G~d 412 (474)
....++++|+++.| +++.+++++||++.+|+++||+||||||||||+++|+|.. .|++|+|.+.+++
T Consensus 174 ~~~~I~i~nls~~y-~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~ 243 (718)
T PLN03073 174 AIKDIHMENFSISV-GGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQE 243 (718)
T ss_pred CceeEEEceEEEEe-CCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEecc
Confidence 34569999999999 4578999999999999999999999999999999999964 5889999765543
No 368
>PTZ00243 ABC transporter; Provisional
Probab=99.21 E-value=3.2e-11 Score=145.31 Aligned_cols=74 Identities=26% Similarity=0.473 Sum_probs=67.3
Q ss_pred CCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEEEcCCCCCCCCCCH
Q psy7411 360 TGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTV 439 (474)
Q Consensus 360 ~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~~Q~~~L~~~LTV 439 (474)
+++++++++||++++||+++|+||||||||||+++|+|+.+|++|++.+. +++|||||++.+++ .|+
T Consensus 671 ~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~------------~~i~yv~Q~~~l~~-~Tv 737 (1560)
T PTZ00243 671 EPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE------------RSIAYVPQQAWIMN-ATV 737 (1560)
T ss_pred CCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC------------CeEEEEeCCCccCC-CcH
Confidence 34679999999999999999999999999999999999999999999752 46999999998875 599
Q ss_pred HHHHHHH
Q psy7411 440 EDHLQFF 446 (474)
Q Consensus 440 ~E~L~~~ 446 (474)
+||+.+.
T Consensus 738 ~enI~~~ 744 (1560)
T PTZ00243 738 RGNILFF 744 (1560)
T ss_pred HHHHHcC
Confidence 9999985
No 369
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.14 E-value=2.9e-11 Score=113.31 Aligned_cols=114 Identities=22% Similarity=0.368 Sum_probs=81.5
Q ss_pred ccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCee-----cCc--ch--
Q psy7411 347 SGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHD-----IWY--EM-- 417 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~d-----I~~--~~-- 417 (474)
+.+++++++|.| +.....+++||++++||+.|++|.+|+|||||+++|++-+.|++|++...-.+ +.. +.
T Consensus 5 PLL~V~~lsk~Y-g~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeR 83 (258)
T COG4107 5 PLLSVSGLSKLY-GPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAER 83 (258)
T ss_pred cceeehhhhhhh-CCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHH
Confidence 457899999999 56779999999999999999999999999999999999999999999886432 211 11
Q ss_pred -HHhhcceEEEcCCCC--CCCCC----CHHHHHH-HHHhcCCCCHHHHHHHH
Q psy7411 418 -GKVRESLGLCPQYDL--LFEEL----TVEDHLQ-FFAKGKEFNGITYGRAL 461 (474)
Q Consensus 418 -~~ir~~IG~~~Q~~~--L~~~L----TV~E~L~-~~~~lkg~~~~~~~~~l 461 (474)
.-.|..=|++.|++. |-... ++.|.+. ...+-+|--+++..+-|
T Consensus 84 R~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL 135 (258)
T COG4107 84 RRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWL 135 (258)
T ss_pred HHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHH
Confidence 113445799999863 33322 3344443 23444554444444333
No 370
>KOG0054|consensus
Probab=99.08 E-value=4.9e-10 Score=131.46 Aligned_cols=91 Identities=19% Similarity=0.402 Sum_probs=81.3
Q ss_pred ccccEEEEeeEEEEcC--CceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhc
Q psy7411 345 NASGIQLRGLTKIYKT--GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRE 422 (474)
Q Consensus 345 ~~~~I~i~~Lsk~y~~--~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~ 422 (474)
....++++|.+..+.. ..+.|+|+||++++|+.++++|+-|||||+|+.+|.|-.+..+|++.++|.
T Consensus 515 ~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs----------- 583 (1381)
T KOG0054|consen 515 GENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS----------- 583 (1381)
T ss_pred CCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe-----------
Confidence 3456899999998853 345999999999999999999999999999999999999999999999874
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHHh
Q psy7411 423 SLGLCPQYDLLFEELTVEDHLQFFAK 448 (474)
Q Consensus 423 ~IG~~~Q~~~L~~~LTV~E~L~~~~~ 448 (474)
++||||.+-++.. ||+|||.|...
T Consensus 584 -iaYv~Q~pWI~ng-TvreNILFG~~ 607 (1381)
T KOG0054|consen 584 -VAYVPQQPWIQNG-TVRENILFGSP 607 (1381)
T ss_pred -EEEeccccHhhCC-cHHHhhhcCcc
Confidence 8999999999987 99999998643
No 371
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.03 E-value=2.5e-10 Score=107.49 Aligned_cols=61 Identities=26% Similarity=0.219 Sum_probs=49.9
Q ss_pred CceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEEEcC
Q psy7411 361 GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQ 429 (474)
Q Consensus 361 ~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~~Q 429 (474)
.+++++++||++++|++++|+||||||||||++++. +++|++.++|..-. ..++.+++++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~~~----~~~~~~~~~~q 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFLPK----FSRNKLIFIDQ 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCcccc----cccccEEEEhH
Confidence 357999999999999999999999999999999985 47999999876321 11335788877
No 372
>KOG0060|consensus
Probab=98.90 E-value=6.3e-09 Score=111.93 Aligned_cols=109 Identities=22% Similarity=0.258 Sum_probs=87.5
Q ss_pred cccEEEEeeEEEEcC-CceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcce
Q psy7411 346 ASGIQLRGLTKIYKT-GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESL 424 (474)
Q Consensus 346 ~~~I~i~~Lsk~y~~-~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~I 424 (474)
...+++++++..-+. +..+++++||+|++|+-.-+.||||||||+|+|+|+||-|.++|++..-...-. +.+
T Consensus 431 Dn~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~-------~~l 503 (659)
T KOG0060|consen 431 DNAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGP-------KDL 503 (659)
T ss_pred cceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCC-------Cce
Confidence 467999999998765 667899999999999999999999999999999999999999999976433211 447
Q ss_pred EEEcCCCCCCCCCCHHHHHHHH-----HhcCCCCHHHHHHHHH
Q psy7411 425 GLCPQYDLLFEELTVEDHLQFF-----AKGKEFNGITYGRALL 462 (474)
Q Consensus 425 G~~~Q~~~L~~~LTV~E~L~~~-----~~lkg~~~~~~~~~l~ 462 (474)
-|+||.+.+-.. |.||.+.+. ...++.+.+++.+-||
T Consensus 504 fflPQrPYmt~G-TLRdQvIYP~~~~~~~~~~~~d~~i~r~Le 545 (659)
T KOG0060|consen 504 FFLPQRPYMTLG-TLRDQVIYPLKAEDMDSKSASDEDILRILE 545 (659)
T ss_pred EEecCCCCcccc-chhheeeccCccccccccCCCHHHHHHHHH
Confidence 899999988766 999999876 3344555555555444
No 373
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.87 E-value=9.2e-10 Score=107.22 Aligned_cols=93 Identities=24% Similarity=0.419 Sum_probs=64.7
Q ss_pred EEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhc----------------CCCCCCee--------
Q psy7411 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLT----------------GLIIPTSG-------- 404 (474)
Q Consensus 349 I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~----------------GL~~PtsG-------- 404 (474)
++++|. |.| +++.++++++ |++++++||||||||||+++|+ +++.+++|
T Consensus 4 i~~~nf-ksy-~~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v 76 (243)
T cd03272 4 VIIQGF-KSY-KDQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYV 76 (243)
T ss_pred EEEeCc-cCc-ccCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEE
Confidence 456664 356 4567888876 8999999999999999999998 45566666
Q ss_pred EEEECCeec----CcchHHhhcceEEEcCCCCCCC-CCCHHHHHHHHHh
Q psy7411 405 TAYIDGHDI----WYEMGKVRESLGLCPQYDLLFE-ELTVEDHLQFFAK 448 (474)
Q Consensus 405 ~i~i~G~dI----~~~~~~ir~~IG~~~Q~~~L~~-~LTV~E~L~~~~~ 448 (474)
++.+++.+- ......+++.+|+++|+..+++ ..|..|...+...
T Consensus 77 ~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~ 125 (243)
T cd03272 77 EIIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLES 125 (243)
T ss_pred EEEEEcCCCccCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHH
Confidence 555555321 1122245677999999888877 4577666555544
No 374
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=98.85 E-value=1.1e-08 Score=111.98 Aligned_cols=106 Identities=23% Similarity=0.329 Sum_probs=88.9
Q ss_pred cccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceE
Q psy7411 346 ASGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLG 425 (474)
Q Consensus 346 ~~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG 425 (474)
...++++|++..-++++..|+++++++++||-+-+.|+||||||||+|+|+|+-|--+|+|..-. ...+-
T Consensus 390 ~~~i~~~nl~l~~p~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~----------~~~~l 459 (604)
T COG4178 390 DHGITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA----------DSALL 459 (604)
T ss_pred cceeEEeeeeEECCCCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC----------CCceE
Confidence 46799999999887778999999999999999999999999999999999999999998876431 12367
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHH
Q psy7411 426 LCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALL 462 (474)
Q Consensus 426 ~~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~ 462 (474)
|+||.+.+... |.+|-|.+.......+.+++.+.|.
T Consensus 460 flpQ~PY~p~G-tLre~l~YP~~~~~~~d~~l~~vL~ 495 (604)
T COG4178 460 FLPQRPYLPQG-TLREALCYPNAAPDFSDAELVAVLH 495 (604)
T ss_pred EecCCCCCCCc-cHHHHHhCCCCCCCCChHHHHHHHH
Confidence 99999998877 9999998876554466666666554
No 375
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=98.85 E-value=2.2e-09 Score=100.97 Aligned_cols=92 Identities=22% Similarity=0.277 Sum_probs=71.7
Q ss_pred EEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chHHhhcceEEE
Q psy7411 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMGKVRESLGLC 427 (474)
Q Consensus 349 I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~~ir~~IG~~ 427 (474)
++++++... .-+-.+|.++..||+.-++||||||||||+..|+|+. |.+|+|.++|+++.. ...++.++-+|.
T Consensus 4 ~qln~v~~~-----tRL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhRAYL 77 (248)
T COG4138 4 MQLNDVAES-----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAYL 77 (248)
T ss_pred eeecccccc-----ccccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHHHHH
Confidence 455665542 2477899999999999999999999999999999986 678999999999863 334455555788
Q ss_pred cCCCCCCCCCCHHHHHHHH
Q psy7411 428 PQYDLLFEELTVEDHLQFF 446 (474)
Q Consensus 428 ~Q~~~L~~~LTV~E~L~~~ 446 (474)
.|+..-...|.|...+.++
T Consensus 78 sQqq~p~f~mpV~~YL~L~ 96 (248)
T COG4138 78 SQQQTPPFAMPVWHYLTLH 96 (248)
T ss_pred hhccCCcchhhhhhhhhhc
Confidence 8876655567777777665
No 376
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=98.84 E-value=1.2e-09 Score=104.29 Aligned_cols=66 Identities=18% Similarity=0.189 Sum_probs=53.1
Q ss_pred eeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCe---------eEEEECCeecCcchHHhhcceEEEcCCCCCC
Q psy7411 366 DNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTS---------GTAYIDGHDIWYEMGKVRESLGLCPQYDLLF 434 (474)
Q Consensus 366 ~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~Pts---------G~i~i~G~dI~~~~~~ir~~IG~~~Q~~~L~ 434 (474)
+++++++++| +++|+||||||||||+++|+|+.+|.. |++.+.|+++... ..++++|+++|++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~vfq~~~~~ 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKP--ANFAEVTLTFDNSDGR 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCC--CceEEEEEEEEcCCCc
Confidence 7789999999 999999999999999999999987763 3566667665431 2356799999987664
No 377
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.83 E-value=1.2e-09 Score=116.37 Aligned_cols=64 Identities=14% Similarity=0.202 Sum_probs=54.0
Q ss_pred ceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCee-EEEECCeecCc----chHHhhcceEEEcCCC
Q psy7411 362 KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSG-TAYIDGHDIWY----EMGKVRESLGLCPQYD 431 (474)
Q Consensus 362 ~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG-~i~i~G~dI~~----~~~~ir~~IG~~~Q~~ 431 (474)
.++|+++|+++++||+++|+||||||||||++ .|+.+|++| +|.++|.++.. .++.+| +|+|+.
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~~~~~ai~~LR----~VFQ~f 87 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFSPNKNAMETLD----EIFDGF 87 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCCCCHHHHHHHH----HHHHhh
Confidence 36899999999999999999999999999999 788888888 79999999864 233344 777764
No 378
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.81 E-value=3.6e-10 Score=109.24 Aligned_cols=80 Identities=19% Similarity=0.300 Sum_probs=62.4
Q ss_pred EEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhh-cceEEE
Q psy7411 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVR-ESLGLC 427 (474)
Q Consensus 349 I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir-~~IG~~ 427 (474)
++++|.. .| +++.+++++++ ++++++|||||||||++++|+ .+.|.+.. ..| +++|++
T Consensus 6 l~l~nfk-~~-~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~----------~~~G~~~~----~~~~~~i~~~ 64 (212)
T cd03274 6 LVLENFK-SY-AGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSML----------FVFGFRAS----KMRQKKLSDL 64 (212)
T ss_pred EEEECcc-cC-CCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHH----------HHhccCHH----HhhhhhHHHH
Confidence 5677765 77 56789999987 899999999999999999997 33444331 223 468999
Q ss_pred cCCCCCCCCCCHHHHHHHHHhc
Q psy7411 428 PQYDLLFEELTVEDHLQFFAKG 449 (474)
Q Consensus 428 ~Q~~~L~~~LTV~E~L~~~~~l 449 (474)
+|+..+++.+|+++++.++...
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~ 86 (212)
T cd03274 65 IHNSAGHPNLDSCSVEVHFQEI 86 (212)
T ss_pred hcCCCCCCCCceEEEEEEEEeC
Confidence 9998888888999888777654
No 379
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.78 E-value=2.7e-08 Score=106.89 Aligned_cols=118 Identities=14% Similarity=0.239 Sum_probs=95.1
Q ss_pred cccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecC--cchHHhhcc
Q psy7411 346 ASGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIW--YEMGKVRES 423 (474)
Q Consensus 346 ~~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~--~~~~~ir~~ 423 (474)
.+.+++++++.. ..++|+||++++|||+|+-|-=|||+|-++++|.|..++++|+|.++|+++. ...+.++..
T Consensus 261 ~~~l~v~~l~~~-----~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~G 335 (500)
T COG1129 261 EPVLEVRNLSGG-----GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAG 335 (500)
T ss_pred CcEEEEecCCCC-----CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcC
Confidence 345778877642 2689999999999999999999999999999999999999999999999876 345567888
Q ss_pred eEEEcCC---CCCCCCCCHHHHHHHHH--hcC-C--CCHHHHHHHHHHHHhHh
Q psy7411 424 LGLCPQY---DLLFEELTVEDHLQFFA--KGK-E--FNGITYGRALLLMMSYV 468 (474)
Q Consensus 424 IG~~~Q~---~~L~~~LTV~E~L~~~~--~lk-g--~~~~~~~~~l~~~~~~~ 468 (474)
++|||.+ ..++..+++.+|+.+.. +.. + .+.++..+..+.++.++
T Consensus 336 i~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l 388 (500)
T COG1129 336 IAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRL 388 (500)
T ss_pred CEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhc
Confidence 9999986 57899999999998762 211 1 45566666777777654
No 380
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.71 E-value=1.5e-08 Score=107.71 Aligned_cols=90 Identities=18% Similarity=0.222 Sum_probs=71.0
Q ss_pred CCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEE---CCeecCcch-------HHhhcceEEEcC
Q psy7411 360 TGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYI---DGHDIWYEM-------GKVRESLGLCPQ 429 (474)
Q Consensus 360 ~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i---~G~dI~~~~-------~~ir~~IG~~~Q 429 (474)
.+.++++++ +++.+||+++|+|+||+|||||+++|+|+.+|+.+.+-. ++.++..-. ...|..+++++|
T Consensus 141 TGi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~ 219 (434)
T PRK07196 141 VGVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPA 219 (434)
T ss_pred cceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecC
Confidence 346799999 999999999999999999999999999999998644333 333332211 112456999999
Q ss_pred CCCCCCCCCHHHHHHHHHhcC
Q psy7411 430 YDLLFEELTVEDHLQFFAKGK 450 (474)
Q Consensus 430 ~~~L~~~LTV~E~L~~~~~lk 450 (474)
+...++.+++.++....+...
T Consensus 220 d~s~~~rl~a~e~a~~iAEyf 240 (434)
T PRK07196 220 DESPLMRIKATELCHAIATYY 240 (434)
T ss_pred CCChhhhHHHHHHHHHHHHHh
Confidence 999999999999998877654
No 381
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.64 E-value=7.5e-08 Score=102.61 Aligned_cols=86 Identities=16% Similarity=0.232 Sum_probs=70.7
Q ss_pred cccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECC---eecCc----chH
Q psy7411 346 ASGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDG---HDIWY----EMG 418 (474)
Q Consensus 346 ~~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G---~dI~~----~~~ 418 (474)
...++.+++++.|..+.++++.++ .+.+||+++|+|+||+|||||+++|+++.+|+.|.+.+.| +++.. ...
T Consensus 137 p~~~~r~~v~~~l~TGi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~l~ 215 (450)
T PRK06002 137 PPAMTRARVETGLRTGVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDTLA 215 (450)
T ss_pred CCCeEeecceEEcCCCcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhHHHHH
Confidence 346789999999976678999996 9999999999999999999999999999999999998864 55432 122
Q ss_pred Hh-hcceEEEcCCCC
Q psy7411 419 KV-RESLGLCPQYDL 432 (474)
Q Consensus 419 ~i-r~~IG~~~Q~~~ 432 (474)
.. ++.+++++|.+.
T Consensus 216 ~~r~rtI~vV~qsd~ 230 (450)
T PRK06002 216 DNLKKAVAVVATSDE 230 (450)
T ss_pred HhhCCeEEEEEcCCC
Confidence 22 356999999864
No 382
>KOG2355|consensus
Probab=98.63 E-value=6.2e-08 Score=93.28 Aligned_cols=70 Identities=27% Similarity=0.434 Sum_probs=62.6
Q ss_pred cccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc
Q psy7411 346 ASGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY 415 (474)
Q Consensus 346 ~~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~ 415 (474)
...|+++++.+.|+...+++-|+|++++.|...-++|.||||||||+++|+|-.-.-.|.|.+.|.+...
T Consensus 11 ~~aievsgl~f~y~~~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFh 80 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFH 80 (291)
T ss_pred cceEEEeccEEecccCCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccc
Confidence 3568999999999877799999999999999999999999999999999999665556999999987653
No 383
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.63 E-value=6.6e-08 Score=91.21 Aligned_cols=83 Identities=19% Similarity=0.150 Sum_probs=61.3
Q ss_pred eeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEEEcCCC--CCCCCCCHHHH
Q psy7411 365 VDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYD--LLFEELTVEDH 442 (474)
Q Consensus 365 L~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~~Q~~--~L~~~LTV~E~ 442 (474)
.+-+.+.+++|+.++++|||||||||++++|+|+.+|+.|.+.+.+..-... ..+..++++.|.. ...+..+..+.
T Consensus 15 ~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (186)
T cd01130 15 AAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQL--PHPNWVRLVTRPGNVEGSGEVTMADL 92 (186)
T ss_pred HHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCC--CCCCEEEEEEecCCCCCCCccCHHHH
Confidence 3445567889999999999999999999999999999999999976432211 1233456665543 45667889998
Q ss_pred HHHHHhc
Q psy7411 443 LQFFAKG 449 (474)
Q Consensus 443 L~~~~~l 449 (474)
+....+.
T Consensus 93 l~~~lR~ 99 (186)
T cd01130 93 LRSALRM 99 (186)
T ss_pred HHHHhcc
Confidence 8776553
No 384
>KOG0064|consensus
Probab=98.63 E-value=7.8e-08 Score=102.77 Aligned_cols=106 Identities=25% Similarity=0.292 Sum_probs=81.6
Q ss_pred cccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceE
Q psy7411 346 ASGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLG 425 (474)
Q Consensus 346 ~~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG 425 (474)
..+|.++|+...-+.+..++..++|++++|--.-++||||||||+|.|+|.||-|...|...+= .+.+|-
T Consensus 479 ~~gI~lenIpvItP~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P----------~~~~mF 548 (728)
T KOG0064|consen 479 FNGIILENIPVITPAGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIP----------RPNNIF 548 (728)
T ss_pred ccceEEecCceeccCcceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecC----------CCcceE
Confidence 3568899998877767789999999999999999999999999999999999999866665431 123489
Q ss_pred EEcCCCCCCCCCCHHHHHHHHH-----hcCCCCHHHHHHHHH
Q psy7411 426 LCPQYDLLFEELTVEDHLQFFA-----KGKEFNGITYGRALL 462 (474)
Q Consensus 426 ~~~Q~~~L~~~LTV~E~L~~~~-----~lkg~~~~~~~~~l~ 462 (474)
|+||.+.+- .=|.+|.+-+.. +-||.+.++..+-|.
T Consensus 549 YIPQRPYms-~gtlRDQIIYPdS~e~~~~kg~~d~dL~~iL~ 589 (728)
T KOG0064|consen 549 YIPQRPYMS-GGTLRDQIIYPDSSEQMKRKGYTDQDLEAILD 589 (728)
T ss_pred eccCCCccC-cCcccceeecCCcHHHHHhcCCCHHHHHHHHH
Confidence 999998775 337777765431 345777666555443
No 385
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=98.58 E-value=9e-09 Score=98.61 Aligned_cols=88 Identities=17% Similarity=0.187 Sum_probs=59.6
Q ss_pred ceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEEEcCCCCCCCCCCHHH
Q psy7411 362 KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVED 441 (474)
Q Consensus 362 ~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~~Q~~~L~~~LTV~E 441 (474)
+.+.++++++. |++++|+||||+||||++|+++|... +...|.++.. + .+++|.+.++..+|+.|
T Consensus 14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-----l~~~G~~v~a------~--~~~~q~~~l~~~~~~~d 78 (199)
T cd03283 14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-----LAQAGAPVCA------S--SFELPPVKIFTSIRVSD 78 (199)
T ss_pred CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-----HHHcCCEEec------C--ccCcccceEEEeccchh
Confidence 45778887775 79999999999999999999987443 1224444421 1 25667778999999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHhHh
Q psy7411 442 HLQFFAKGKEFNGITYGRALLLMMSYV 468 (474)
Q Consensus 442 ~L~~~~~lkg~~~~~~~~~l~~~~~~~ 468 (474)
++.+... ....+. +++.+++..+
T Consensus 79 ~l~~~~s---~~~~e~-~~~~~iL~~~ 101 (199)
T cd03283 79 DLRDGIS---YFYAEL-RRLKEIVEKA 101 (199)
T ss_pred ccccccC---hHHHHH-HHHHHHHHhc
Confidence 9976321 112333 4455555543
No 386
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.58 E-value=6.6e-09 Score=102.31 Aligned_cols=91 Identities=23% Similarity=0.352 Sum_probs=61.8
Q ss_pred EEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCC-eeEEEECCe-ecCcc--h-HHhhcc
Q psy7411 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPT-SGTAYIDGH-DIWYE--M-GKVRES 423 (474)
Q Consensus 349 I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~Pt-sG~i~i~G~-dI~~~--~-~~ir~~ 423 (474)
++++|. |.| +....+.++ ...+++++|||||||||++++|++++.|+ .|++...+. ++... . ...+++
T Consensus 6 ~~~~~f-~~~-~~~~~~~~~-----~~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~ 78 (251)
T cd03273 6 IILDGF-KSY-ATRTVISGF-----DPQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKAS 78 (251)
T ss_pred EEEeCc-ccc-CcCEeeccC-----CCCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEE
Confidence 456665 556 233332222 26799999999999999999999999887 468887766 33211 1 112347
Q ss_pred eEEEcCCC---------CCCCCCCHHHHHHHH
Q psy7411 424 LGLCPQYD---------LLFEELTVEDHLQFF 446 (474)
Q Consensus 424 IG~~~Q~~---------~L~~~LTV~E~L~~~ 446 (474)
+++++|++ .+.+.+||.+++...
T Consensus 79 v~~~fq~~~~~~~~~~~~~~~~ltV~r~I~~~ 110 (251)
T cd03273 79 VTIVFDNSDKSQSPIGFENYPEITVTRQIVLG 110 (251)
T ss_pred EEEEEEcCCcccCcccccCCceEEEEEEEEcC
Confidence 99999984 356678888887653
No 387
>KOG0065|consensus
Probab=98.58 E-value=8.4e-08 Score=111.42 Aligned_cols=89 Identities=27% Similarity=0.422 Sum_probs=78.4
Q ss_pred ceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCC---CeeEEEECCeecCcchHHhhcceEEEcCCCCCCCCCC
Q psy7411 362 KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIP---TSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELT 438 (474)
Q Consensus 362 ~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~P---tsG~i~i~G~dI~~~~~~ir~~IG~~~Q~~~L~~~LT 438 (474)
..+++|++.-+++|+.+-++||.|||||||+++|+|-.+- ..|+|..+|++...... ++.++|++|+|..+++||
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~--~~~~aY~~e~DvH~p~lT 205 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP--KKTVAYNSEQDVHFPELT 205 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc--CceEEeccccccccceeE
Confidence 5799999999999999999999999999999999994432 24699999999865433 677999999999999999
Q ss_pred HHHHHHHHHhcCCC
Q psy7411 439 VEDHLQFFAKGKEF 452 (474)
Q Consensus 439 V~E~L~~~~~lkg~ 452 (474)
|+|-+.|.++.|+.
T Consensus 206 VreTldFa~rck~~ 219 (1391)
T KOG0065|consen 206 VRETLDFAARCKGP 219 (1391)
T ss_pred EeehhhHHHhccCC
Confidence 99999999998875
No 388
>KOG0927|consensus
Probab=98.53 E-value=4.9e-08 Score=104.57 Aligned_cols=67 Identities=27% Similarity=0.389 Sum_probs=60.1
Q ss_pred ccccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCe
Q psy7411 345 NASGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGH 411 (474)
Q Consensus 345 ~~~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~ 411 (474)
+.+.+.+.|+++.|.++..+.++++|.+..++.++++||||||||||+++++|.+.|+.|.+.-.-+
T Consensus 386 p~pvi~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H 452 (614)
T KOG0927|consen 386 PPPVIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSH 452 (614)
T ss_pred CCCeEEEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccccc
Confidence 4567899999999965557999999999999999999999999999999999999999999875543
No 389
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=98.53 E-value=1.7e-08 Score=96.84 Aligned_cols=55 Identities=36% Similarity=0.544 Sum_probs=53.9
Q ss_pred ccccccCCCceeEEechhhhhhHHHHHHhhCccCCcccccchhccccccceeeee
Q psy7411 44 IAGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAKW 98 (474)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 98 (474)
|+|++.||+|.++|||+|.+++--++|+.+|..++.-.||.+||++|||.||+.+
T Consensus 48 iatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L 102 (245)
T COG4555 48 IATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARL 102 (245)
T ss_pred HHHhccCCCceEEEeecccccChHHHhhhcceecCCcChhhhhhHHHHHHHHHHH
Confidence 7899999999999999999999999999999999999999999999999999988
No 390
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.51 E-value=8.6e-08 Score=96.26 Aligned_cols=66 Identities=18% Similarity=0.187 Sum_probs=54.6
Q ss_pred cEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc--chHHhhcceEEEcCCCCCCCCCCHHHH
Q psy7411 376 QITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY--EMGKVRESLGLCPQYDLLFEELTVEDH 442 (474)
Q Consensus 376 ei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~--~~~~ir~~IG~~~Q~~~L~~~LTV~E~ 442 (474)
+.++++|||||||||++++|+|+++|++|++.++|+++.. ...++++.++++||++ +...++|.|+
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~-~~~r~~v~~~ 179 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHD-VGIRTDVLDG 179 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhccccccc-cccccccccc
Confidence 5789999999999999999999999999999999999863 3456666678899975 4556666654
No 391
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=98.46 E-value=4.2e-08 Score=94.14 Aligned_cols=73 Identities=29% Similarity=0.486 Sum_probs=52.7
Q ss_pred eEEeCCcEEEEeCCCCCChhHHHHhh----cCCCCCCeeEEEECCeecCcchHHhhcceEEEcCCC-----CCCCCCCHH
Q psy7411 370 LDMYQNQITVLLGHNGAGKSTTMSML----TGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYD-----LLFEELTVE 440 (474)
Q Consensus 370 L~i~~Gei~gLLGpNGAGKTTLL~~L----~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~~Q~~-----~L~~~LTV~ 440 (474)
+++.+| +++++||||||||||+++| .|..+|++|.+..+.+.+.. ...+..+++++|++ .....+|+.
T Consensus 18 l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~--~~~~~~v~~~f~~~~~~~~~v~r~~~~~ 94 (204)
T cd03240 18 IEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIRE--GEVRAQVKLAFENANGKKYTITRSLAIL 94 (204)
T ss_pred EecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhC--CCCcEEEEEEEEeCCCCEEEEEEEhhHh
Confidence 455566 9999999999999999998 59999988877622222221 23456799999987 444556888
Q ss_pred HHHHH
Q psy7411 441 DHLQF 445 (474)
Q Consensus 441 E~L~~ 445 (474)
|++.+
T Consensus 95 ~~~~~ 99 (204)
T cd03240 95 ENVIF 99 (204)
T ss_pred hceee
Confidence 88754
No 392
>KOG0062|consensus
Probab=98.42 E-value=3.4e-07 Score=97.73 Aligned_cols=136 Identities=23% Similarity=0.207 Sum_probs=109.8
Q ss_pred hcCCCCCCCcccccccccccccCcCcc-ccccEEEEeeEEEEcCCc-eeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhh
Q psy7411 318 LLGHNGAGKSTTMSMLTGYKRKSKDIV-NASGIQLRGLTKIYKTGK-KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSML 395 (474)
Q Consensus 318 ~~g~~~~~kst~~~~i~g~~~~~~~~~-~~~~I~i~~Lsk~y~~~~-~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L 395 (474)
.++++++++++.++.+.+..-++.+.+ ..+.+++.++++.|..+. ..+.++++++......+.+|+||+||||+++++
T Consensus 331 ~L~kl~~lk~~~~~~~~~~~fP~~~e~~~~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~ 410 (582)
T KOG0062|consen 331 MLGKLPALKSTLIEVLIGFLFPTEGEVLSPPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKIL 410 (582)
T ss_pred HhccCCCCCccceecccceecCCCCCcCCCCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHH
Confidence 467899999988777777766664433 346689999999996555 689999999999999999999999999999999
Q ss_pred cCCCCCCeeEEEECCeecCcchHHhhcceEEEcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy7411 396 TGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLL 463 (474)
Q Consensus 396 ~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~ 463 (474)
.|-..|++|.+.+.+ |.+++|-.|+++=+-++.|-+--...+...|.+++++.+.+.+
T Consensus 411 ~~~l~~~rgi~~~~~----------r~ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~ 468 (582)
T KOG0062|consen 411 KGDLTPTRGIVGRHP----------RLRIKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGS 468 (582)
T ss_pred hccCCcccceeeecc----------cceecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHh
Confidence 999999999887654 5669999999887766666665555566668888888877754
No 393
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=98.41 E-value=4.5e-08 Score=99.21 Aligned_cols=57 Identities=44% Similarity=0.663 Sum_probs=54.5
Q ss_pred cccccccCCCceeEEechhhhhhHHHHHHhhCccCCcccccchhccccccceeeeee
Q psy7411 43 DIAGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAKWR 99 (474)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 99 (474)
=+++++.|++|++.++|+|++.+..++|+++|||||.+.+|+.|||.|||.|+++.+
T Consensus 50 ~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~ 106 (293)
T COG1131 50 ILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLY 106 (293)
T ss_pred HHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHh
Confidence 478899999999999999999999999999999999999999999999999999984
No 394
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.37 E-value=2.1e-07 Score=90.62 Aligned_cols=33 Identities=27% Similarity=0.547 Sum_probs=30.9
Q ss_pred CCceeeeeeeeEEeCCcEEEEeCCCCCChhHHH
Q psy7411 360 TGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTM 392 (474)
Q Consensus 360 ~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL 392 (474)
.+.++|+++||++++||+++|+|+||||||||+
T Consensus 6 ~~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~ 38 (226)
T cd03270 6 AREHNLKNVDVDIPRNKLVVITGVSGSGKSSLA 38 (226)
T ss_pred chhhccccceeecCCCcEEEEEcCCCCCHHHHH
Confidence 456799999999999999999999999999995
No 395
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=98.35 E-value=2.4e-07 Score=89.19 Aligned_cols=79 Identities=18% Similarity=0.273 Sum_probs=51.7
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEe-CCcEEEEeCCCCCChhHHHHhhcC-CCCCCeeEEEECC-eecCcchHHhhcce
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMY-QNQITVLLGHNGAGKSTTMSMLTG-LIIPTSGTAYIDG-HDIWYEMGKVRESL 424 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~-~Gei~gLLGpNGAGKTTLL~~L~G-L~~PtsG~i~i~G-~dI~~~~~~ir~~I 424 (474)
.++++|+. .|.+ . .+++|+.. +|++++++|||||||||++++|++ +..+..+...... .+.. ...+.+..+
T Consensus 5 ~i~l~nf~-~y~~-~---~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~-~~~~~~~~v 78 (213)
T cd03279 5 KLELKNFG-PFRE-E---QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVF-APGEDTAEV 78 (213)
T ss_pred EEEEECCc-CcCC-c---eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHh-cCCCccEEE
Confidence 46788887 6633 2 56667654 589999999999999999999996 5455555444321 0110 112234568
Q ss_pred EEEcCCCC
Q psy7411 425 GLCPQYDL 432 (474)
Q Consensus 425 G~~~Q~~~ 432 (474)
++.+|...
T Consensus 79 ~~~f~~~~ 86 (213)
T cd03279 79 SFTFQLGG 86 (213)
T ss_pred EEEEEECC
Confidence 88888753
No 396
>KOG0066|consensus
Probab=98.33 E-value=7.9e-07 Score=93.45 Aligned_cols=104 Identities=24% Similarity=0.266 Sum_probs=81.1
Q ss_pred ccccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcce
Q psy7411 345 NASGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESL 424 (474)
Q Consensus 345 ~~~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~I 424 (474)
..+.+-++++++.|.+.++.+.+++|-|.-...++++||||.|||||++.|.|-+.|+.|+.+-+ .|-+|
T Consensus 583 ~PPvLGlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKn----------hrL~i 652 (807)
T KOG0066|consen 583 NPPVLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKN----------HRLRI 652 (807)
T ss_pred CCCeeecccccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhcc----------ceeee
Confidence 34568899999999888899999999999999999999999999999999999999999976533 13358
Q ss_pred EEEcCCC--CCCCCCCHHHHHHHHHhcCCCCHHHHHHHH
Q psy7411 425 GLCPQYD--LLFEELTVEDHLQFFAKGKEFNGITYGRAL 461 (474)
Q Consensus 425 G~~~Q~~--~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l 461 (474)
|+.-|+. .|....|..|.| .+..+++.+++.+.|
T Consensus 653 G~FdQh~~E~L~~Eetp~EyL---qr~FNlpyq~ARK~L 688 (807)
T KOG0066|consen 653 GWFDQHANEALNGEETPVEYL---QRKFNLPYQEARKQL 688 (807)
T ss_pred echhhhhHHhhccccCHHHHH---HHhcCCChHHHHHHh
Confidence 8888874 344455555544 445566666655554
No 397
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.32 E-value=1.2e-06 Score=92.63 Aligned_cols=83 Identities=30% Similarity=0.455 Sum_probs=58.2
Q ss_pred EEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEEEc
Q psy7411 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCP 428 (474)
Q Consensus 349 I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~~ 428 (474)
++-.+++|.|+ +. .|+-=.=+++.||++|++||||-||||+.++|+|.++|++|. ..++ ++.|=|
T Consensus 343 v~y~~~~k~~g-~F-~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~~---------~vSyKP 407 (591)
T COG1245 343 VEYPDLKKTYG-DF-KLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EEDL---------KVSYKP 407 (591)
T ss_pred eecchheeecC-ce-EEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Cccc---------eEeecc
Confidence 45556667773 22 333333457888999999999999999999999999999997 2221 366777
Q ss_pred CCCCCCCCCCHHHHHHHH
Q psy7411 429 QYDLLFEELTVEDHLQFF 446 (474)
Q Consensus 429 Q~~~L~~~LTV~E~L~~~ 446 (474)
|.-.-..+.||++-+.-.
T Consensus 408 QyI~~~~~gtV~~~l~~~ 425 (591)
T COG1245 408 QYISPDYDGTVEDLLRSA 425 (591)
T ss_pred eeecCCCCCcHHHHHHHh
Confidence 764444556777776543
No 398
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.31 E-value=4.3e-07 Score=85.40 Aligned_cols=69 Identities=22% Similarity=0.280 Sum_probs=53.0
Q ss_pred CCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhh-cceEEEcCCCCCCCCCCHHHHHHHHH
Q psy7411 374 QNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVR-ESLGLCPQYDLLFEELTVEDHLQFFA 447 (474)
Q Consensus 374 ~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir-~~IG~~~Q~~~L~~~LTV~E~L~~~~ 447 (474)
+||+++++|+|||||||++++|+|++.| +.++|.++.... ..| ...|+.+|+...++..++.+++.+..
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~~~~~~-~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~ 71 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDGDDLHPAK-NIDKMSQGIPLTDEDRLPWLERLNDASYSL 71 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCcccCCHh-HHHHHhcCCCCCcccchHHHHHHHHHHHHH
Confidence 6899999999999999999999999887 588888875432 222 23577777766667778888877543
No 399
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=98.28 E-value=7.8e-07 Score=93.10 Aligned_cols=49 Identities=29% Similarity=0.550 Sum_probs=44.7
Q ss_pred ceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcC--------CCCCCeeEEEECC
Q psy7411 362 KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG--------LIIPTSGTAYIDG 410 (474)
Q Consensus 362 ~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~G--------L~~PtsG~i~i~G 410 (474)
..+++|+||++++|++++++|++||||||+++|+.| .++|++|.+.+--
T Consensus 396 ryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~ 452 (593)
T COG2401 396 RYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPK 452 (593)
T ss_pred eeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccc
Confidence 468999999999999999999999999999999999 5689999987643
No 400
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.25 E-value=4.6e-07 Score=97.61 Aligned_cols=73 Identities=18% Similarity=0.240 Sum_probs=54.6
Q ss_pred eeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEEEcCCCCCCCCCCHHHH
Q psy7411 363 KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDH 442 (474)
Q Consensus 363 ~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~~Q~~~L~~~LTV~E~ 442 (474)
.++++.+..+.+|++++++||||+||||++..|++.+.+..|. ++++++.++. ...++.|+
T Consensus 244 ~~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~----------------~kV~LI~~Dt---~RigA~EQ 304 (484)
T PRK06995 244 PVLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGA----------------SKVALLTTDS---YRIGGHEQ 304 (484)
T ss_pred hhccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCC----------------CeEEEEeCCc---cchhHHHH
Confidence 3566677778889999999999999999999999876655442 2356666653 34577888
Q ss_pred HHHHHhcCCCCH
Q psy7411 443 LQFFAKGKEFNG 454 (474)
Q Consensus 443 L~~~~~lkg~~~ 454 (474)
+.+|+.+.|.+.
T Consensus 305 Lr~~AeilGVpv 316 (484)
T PRK06995 305 LRIYGKILGVPV 316 (484)
T ss_pred HHHHHHHhCCCe
Confidence 888877766543
No 401
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.24 E-value=7.6e-07 Score=90.33 Aligned_cols=76 Identities=21% Similarity=0.236 Sum_probs=58.2
Q ss_pred CcEEEEeCCCCCChhHHHHhhcCCCC--CCeeEEEECCeecCcchHHhhcceEEEcCCCCCCCCCCHHHHHHHHHhcCC
Q psy7411 375 NQITVLLGHNGAGKSTTMSMLTGLII--PTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAKGKE 451 (474)
Q Consensus 375 Gei~gLLGpNGAGKTTLL~~L~GL~~--PtsG~i~i~G~dI~~~~~~ir~~IG~~~Q~~~L~~~LTV~E~L~~~~~lkg 451 (474)
-.++|+.|+|||||||++++|.++.. |++|.+.+-+.|-.....+.++..|+. |.....+.+++.+.+.+...++.
T Consensus 62 p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~~~l~~~g~~-~~~g~P~s~D~~~l~~~L~~Lk~ 139 (290)
T TIGR00554 62 PYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPNQVLKERNLM-KKKGFPESYDMHRLVKFLSDLKS 139 (290)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccHHHHHHcCCc-cccCCChhccHHHHHHHHHHHHC
Confidence 36899999999999999999999988 788988876666543323334445654 66677788899999988877763
No 402
>KOG0927|consensus
Probab=98.22 E-value=1.6e-06 Score=93.19 Aligned_cols=60 Identities=23% Similarity=0.458 Sum_probs=53.9
Q ss_pred ccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEE
Q psy7411 347 SGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAY 407 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~ 407 (474)
..+++.++++.| .++.+++|+.|++.+||.+||+|+|||||||++++++|-..|..-++-
T Consensus 74 ~dvk~~sls~s~-~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d 133 (614)
T KOG0927|consen 74 RDVKIESLSLSF-HGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHID 133 (614)
T ss_pred ccceeeeeeecc-CCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccc
Confidence 468999999999 468999999999999999999999999999999999998888654443
No 403
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.22 E-value=1.1e-06 Score=85.56 Aligned_cols=73 Identities=25% Similarity=0.340 Sum_probs=53.1
Q ss_pred CCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEE----EECCeecCcchHHhhcceEEEcCCCCCCCCCCHHHHHHHHHhc
Q psy7411 374 QNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTA----YIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAKG 449 (474)
Q Consensus 374 ~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i----~i~G~dI~~~~~~ir~~IG~~~Q~~~L~~~LTV~E~L~~~~~l 449 (474)
+..++||.||||||||||++.|++++++++|.+ ..++... ....++..|++++.. ..+.+++.+.+.++..+
T Consensus 32 ~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~---~~~~~~~~g~~~~~~-~~~~~d~~~~~~~l~~l 107 (229)
T PRK09270 32 RRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHL---DNAVLDAHGLRPRKG-APETFDVAGLAALLRRL 107 (229)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccC---CHHHHHhcccccccC-CCCCCCHHHHHHHHHHH
Confidence 467999999999999999999999999999984 4444322 222334467777643 34667888888777665
Q ss_pred C
Q psy7411 450 K 450 (474)
Q Consensus 450 k 450 (474)
+
T Consensus 108 ~ 108 (229)
T PRK09270 108 R 108 (229)
T ss_pred H
Confidence 5
No 404
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.22 E-value=1.7e-06 Score=86.62 Aligned_cols=90 Identities=23% Similarity=0.292 Sum_probs=60.2
Q ss_pred ceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhc--------CC--CCCCe-----------eEEEECCeecCcch---
Q psy7411 362 KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLT--------GL--IIPTS-----------GTAYIDGHDIWYEM--- 417 (474)
Q Consensus 362 ~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~--------GL--~~Pts-----------G~i~i~G~dI~~~~--- 417 (474)
...|++++++++.|+.+++.|++|||||||++.+. +. ..|.. -.+.++..++.+..
T Consensus 8 ~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~ 87 (261)
T cd03271 8 ENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSN 87 (261)
T ss_pred hhcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCc
Confidence 35799999999999999999999999999998541 11 01221 14566666554211
Q ss_pred --------HHhhc----------------ceEEEcCCCCCCCCCCHHHHHHHHHhcCC
Q psy7411 418 --------GKVRE----------------SLGLCPQYDLLFEELTVEDHLQFFAKGKE 451 (474)
Q Consensus 418 --------~~ir~----------------~IG~~~Q~~~L~~~LTV~E~L~~~~~lkg 451 (474)
+++|+ .++|..++.....++|+.|++.|+...++
T Consensus 88 ~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~ 145 (261)
T cd03271 88 PATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPK 145 (261)
T ss_pred HHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhh
Confidence 22222 13444455455678999999999877653
No 405
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.21 E-value=1.9e-06 Score=92.02 Aligned_cols=70 Identities=23% Similarity=0.253 Sum_probs=57.9
Q ss_pred CceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecC---c------chHHhhcceEEEcCCC
Q psy7411 361 GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIW---Y------EMGKVRESLGLCPQYD 431 (474)
Q Consensus 361 ~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~---~------~~~~ir~~IG~~~Q~~ 431 (474)
+.++++++ +.+.+||+++++|+||+|||||+++|+|+.+|+.|.+.+.|++-. . ....+++.+.++.+.+
T Consensus 145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~ 223 (438)
T PRK07721 145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSD 223 (438)
T ss_pred chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCC
Confidence 45799999 999999999999999999999999999999999999999665442 1 1123567789997754
No 406
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.16 E-value=2.8e-06 Score=80.02 Aligned_cols=83 Identities=12% Similarity=-0.001 Sum_probs=54.0
Q ss_pred CcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcc-hHHhhcceEEEcCCCC-CCCCCCHHHHHHHHHhcCCC
Q psy7411 375 NQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYE-MGKVRESLGLCPQYDL-LFEELTVEDHLQFFAKGKEF 452 (474)
Q Consensus 375 Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~-~~~ir~~IG~~~Q~~~-L~~~LTV~E~L~~~~~lkg~ 452 (474)
|++++|+|||||||||++++|++...| .+.+.+..+... ....+..+++.+|+.. ..+.-...+.-......+|.
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~yg~ 78 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHRYITRPASAGSENHIALSEQEFFTRAGQNLFALSWHANGLYYGV 78 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCEECCCccchhHHhheeEcHHHHHHHHHCCchhhHHHHhCCccCC
Confidence 789999999999999999999998876 477777766532 2223456788887632 12222233344445556676
Q ss_pred CHHHHHHHH
Q psy7411 453 NGITYGRAL 461 (474)
Q Consensus 453 ~~~~~~~~l 461 (474)
+. ++++.+
T Consensus 79 ~~-~~~~~l 86 (186)
T PRK10078 79 GI-EIDLWL 86 (186)
T ss_pred cH-HHHHHH
Confidence 65 344444
No 407
>KOG0062|consensus
Probab=98.16 E-value=1.7e-06 Score=92.57 Aligned_cols=51 Identities=25% Similarity=0.445 Sum_probs=47.1
Q ss_pred cccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcC
Q psy7411 346 ASGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 346 ~~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~G 397 (474)
...|.+.+.+..| +++.+|++-++++..|..+||+|+||+|||||||+|+.
T Consensus 78 ~~Di~~~~fdLa~-G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~ 128 (582)
T KOG0062|consen 78 SKDIHIDNFDLAY-GGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN 128 (582)
T ss_pred ccceeeeeeeeee-cchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh
Confidence 3457888999999 67899999999999999999999999999999999987
No 408
>KOG0059|consensus
Probab=98.13 E-value=4.8e-07 Score=104.33 Aligned_cols=69 Identities=46% Similarity=0.756 Sum_probs=58.5
Q ss_pred hcCCCccccccceeeecccccccccCCCceeEEechhhhh--hHHHHHHhhCccCCcccccchhccccccceeeee
Q psy7411 25 LTQPGAMKDYIAGVVFDDDIAGLIIPTSGTAYIDGHDIWY--EMGKVRESLGLCPQYDLLFEELTVEDHLQFFAKW 98 (474)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 98 (474)
|---||-|..+-.. ++|..+||+|+|+|+|||+.. ++.++|+.+|||||+|.|.++||.+|||.||+..
T Consensus 597 LG~NGAGKtT~f~m-----ltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arl 667 (885)
T KOG0059|consen 597 LGVNGAGKTTTFKM-----LTGETKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGREHLEFYARL 667 (885)
T ss_pred ecCCCCCchhhHHH-----HhCCccCCcceEEEecCccccccchhhhhhhcccCCchhhhhhhccHHHHHHHHHHH
Confidence 33456666665553 567789999999999999988 5566999999999999999999999999999977
No 409
>PRK08149 ATP synthase SpaL; Validated
Probab=98.12 E-value=5.4e-06 Score=88.26 Aligned_cols=71 Identities=25% Similarity=0.235 Sum_probs=58.7
Q ss_pred CCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCe---eEEEECCeecCcchHH-----hhcceEEEcCCC
Q psy7411 360 TGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTS---GTAYIDGHDIWYEMGK-----VRESLGLCPQYD 431 (474)
Q Consensus 360 ~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~Pts---G~i~i~G~dI~~~~~~-----ir~~IG~~~Q~~ 431 (474)
.+.++++++ +++.+||+++|+|+||+|||||+++|++...++. |.|-..|+++..-.++ .++++++++...
T Consensus 137 tGi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~s 215 (428)
T PRK08149 137 TGVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATS 215 (428)
T ss_pred CCcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECC
Confidence 456899999 9999999999999999999999999999999987 8999999988642222 235677777653
No 410
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.08 E-value=3.6e-06 Score=81.53 Aligned_cols=95 Identities=25% Similarity=0.313 Sum_probs=69.2
Q ss_pred EEEEeeEEEEc---CCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCC----CeeEEEECCeecCc-chHH-
Q psy7411 349 IQLRGLTKIYK---TGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIP----TSGTAYIDGHDIWY-EMGK- 419 (474)
Q Consensus 349 I~i~~Lsk~y~---~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~P----tsG~i~i~G~dI~~-~~~~- 419 (474)
+.++||+..+. +..++||++|+++.+||+-||+|.+|+|||-..++++|..+- |.-+.++++-++.+ ..++
T Consensus 4 LDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~R 83 (330)
T COG4170 4 LDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRER 83 (330)
T ss_pred ccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHh
Confidence 56788887663 446899999999999999999999999999999999997753 34455555555432 2222
Q ss_pred ---hhcceEEEcCCCC--CCCCCCHHHHH
Q psy7411 420 ---VRESLGLCPQYDL--LFEELTVEDHL 443 (474)
Q Consensus 420 ---ir~~IG~~~Q~~~--L~~~LTV~E~L 443 (474)
+.+.+.+++|++. |.+..++...+
T Consensus 84 Rk~ig~~isMIFQeP~sCLDPS~~iG~Ql 112 (330)
T COG4170 84 RKLVGHNVSMIFQEPQSCLDPSERVGRQL 112 (330)
T ss_pred hhhhccchhhhhcCchhhcChHHHHHHHH
Confidence 2345789999864 66655555443
No 411
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=98.08 E-value=4.6e-06 Score=88.89 Aligned_cols=65 Identities=23% Similarity=0.244 Sum_probs=57.5
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeec
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDI 413 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI 413 (474)
.++.+.+++.+..+.++++++ +.+.+||.++|+|+||+|||||+++|+|+.+|+.|.+...|++-
T Consensus 129 ~~~r~~v~~~l~tGi~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~iGeRg 193 (433)
T PRK07594 129 AMVRQPITQPLMTGIRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERG 193 (433)
T ss_pred ceeccCHhheeCCCceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEEECCCc
Confidence 466777788886567899999 99999999999999999999999999999999999888777654
No 412
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=98.06 E-value=7.1e-06 Score=84.58 Aligned_cols=59 Identities=24% Similarity=0.325 Sum_probs=50.8
Q ss_pred eEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeec
Q psy7411 354 LTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDI 413 (474)
Q Consensus 354 Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI 413 (474)
++..+..+.++++++ +.+.+||+++++|+||+|||||+++|+|+.+|+.|.+...|++-
T Consensus 49 ~~~~l~tGi~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~iGer~ 107 (326)
T cd01136 49 IDEVLPTGVRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIALIGERG 107 (326)
T ss_pred ceeEcCCCcEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEecCC
Confidence 344554557899999 99999999999999999999999999999999999888766543
No 413
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.04 E-value=1.8e-06 Score=82.66 Aligned_cols=74 Identities=15% Similarity=-0.007 Sum_probs=47.1
Q ss_pred eCCcEEEEeCCCCCChhHHHHhhcCCCCC-CeeEEEECCeecCcchHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q psy7411 373 YQNQITVLLGHNGAGKSTTMSMLTGLIIP-TSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFF 446 (474)
Q Consensus 373 ~~Gei~gLLGpNGAGKTTLL~~L~GL~~P-tsG~i~i~G~dI~~~~~~ir~~IG~~~Q~~~L~~~LTV~E~L~~~ 446 (474)
++|+++++.|||||||||+++.|++++++ ..+.+..++.-........++..++.+|.+..++...+.++|.-.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l 78 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYYKDQSHLEMAERKKTNFDHPDAFDNDLLYEHLKNL 78 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccccccChhhCCHHHhcCCCCCCccHhHHHHHHHHHHHH
Confidence 68999999999999999999999999876 233443333211111111233456667766555544555665443
No 414
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=98.02 E-value=1.1e-06 Score=89.56 Aligned_cols=56 Identities=27% Similarity=0.514 Sum_probs=51.1
Q ss_pred cccccccCCCceeEEechhhhhhHHHHHHhhCccCCcccccchhccccccceeeee
Q psy7411 43 DIAGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAKW 98 (474)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 98 (474)
=|+++++|++|+++|+|+|+...-.++|+++|||||...+|+++||.||+.|++..
T Consensus 52 ~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~ 107 (306)
T PRK13537 52 MLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRY 107 (306)
T ss_pred HHhcCCCCCceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHH
Confidence 36788999999999999999887778999999999999999999999999987754
No 415
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.02 E-value=3.8e-06 Score=86.28 Aligned_cols=74 Identities=18% Similarity=0.156 Sum_probs=58.5
Q ss_pred eCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcc-----h--HHhhcceEEEcCCCCCCCCCCHHHHHHH
Q psy7411 373 YQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYE-----M--GKVRESLGLCPQYDLLFEELTVEDHLQF 445 (474)
Q Consensus 373 ~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~-----~--~~ir~~IG~~~Q~~~L~~~LTV~E~L~~ 445 (474)
.+|++++++||||+||||++..|++.+.+..+++.+.+.|..+. . ...+..+++++|.....+..++.+.+..
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~ 191 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQA 191 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHH
Confidence 57899999999999999999999999999889999988887431 1 1224568899987666666677787765
Q ss_pred H
Q psy7411 446 F 446 (474)
Q Consensus 446 ~ 446 (474)
.
T Consensus 192 ~ 192 (318)
T PRK10416 192 A 192 (318)
T ss_pred H
Confidence 3
No 416
>PRK06315 type III secretion system ATPase; Provisional
Probab=97.99 E-value=1.3e-05 Score=85.78 Aligned_cols=91 Identities=15% Similarity=0.203 Sum_probs=61.1
Q ss_pred CceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCC-CeeEEEECC---eecCcc----hHHhhcceEEE-----
Q psy7411 361 GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIP-TSGTAYIDG---HDIWYE----MGKVRESLGLC----- 427 (474)
Q Consensus 361 ~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~P-tsG~i~i~G---~dI~~~----~~~ir~~IG~~----- 427 (474)
+.+++|++ +.+.+||.++++|+||+|||||+++|+|+.++ +.|.+...| +++..- +.+...+.+++
T Consensus 151 Gi~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats 229 (442)
T PRK06315 151 GVRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTS 229 (442)
T ss_pred eEEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCC
Confidence 45799998 99999999999999999999999999998854 446666644 444321 11111234455
Q ss_pred cCCCC--CCCCCCHHHHHHHHHhcCCCC
Q psy7411 428 PQYDL--LFEELTVEDHLQFFAKGKEFN 453 (474)
Q Consensus 428 ~Q~~~--L~~~LTV~E~L~~~~~lkg~~ 453 (474)
+|++. +.+.+ +...++-+.+.+|..
T Consensus 230 ~q~p~~rlnp~~-va~~IAE~~r~~g~~ 256 (442)
T PRK06315 230 DQSSQLRLNAAY-VGTAIAEYFRDQGKT 256 (442)
T ss_pred CCCHHHHhhHHH-HHHHHHHHHHHcCCC
Confidence 77652 44444 555665555555543
No 417
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.98 E-value=4.9e-06 Score=84.09 Aligned_cols=75 Identities=20% Similarity=0.173 Sum_probs=56.4
Q ss_pred CcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEE---CCeecCcchHHhhc-ceEEEcCCCCC---C-CCCCHHHHHHHH
Q psy7411 375 NQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYI---DGHDIWYEMGKVRE-SLGLCPQYDLL---F-EELTVEDHLQFF 446 (474)
Q Consensus 375 Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i---~G~dI~~~~~~ir~-~IG~~~Q~~~L---~-~~LTV~E~L~~~ 446 (474)
+++++++|+||+|||||++.|.|...++.|++.. .|+...+....++. ..|++.+.+.+ . ..++..|....+
T Consensus 161 ~k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~f 240 (287)
T cd01854 161 GKTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGGGLLIDTPGFREFGLLHIDPEELAHYF 240 (287)
T ss_pred cceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCCCEEEECCCCCccCCccCCHHHHHHHh
Confidence 5899999999999999999999999999999876 34433333222332 36789998876 3 467888888776
Q ss_pred Hhc
Q psy7411 447 AKG 449 (474)
Q Consensus 447 ~~l 449 (474)
..+
T Consensus 241 ~~~ 243 (287)
T cd01854 241 PEF 243 (287)
T ss_pred HHH
Confidence 543
No 418
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.96 E-value=3.3e-06 Score=83.05 Aligned_cols=55 Identities=36% Similarity=0.520 Sum_probs=49.1
Q ss_pred cccccccCCCceeEEechhhh----hhHHHHHHhhCccCCcccccchhccccccceeee
Q psy7411 43 DIAGLIIPTSGTAYIDGHDIW----YEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAK 97 (474)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 97 (474)
-|.++++|++|++.|+|.|+. ++..+||+++|++.|+--||.+|||.||..|...
T Consensus 53 ~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplr 111 (263)
T COG1127 53 LILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLR 111 (263)
T ss_pred HHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccchhHhhheehH
Confidence 467899999999999999965 3666999999999999999999999999999543
No 419
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=97.95 E-value=1.5e-05 Score=84.96 Aligned_cols=83 Identities=18% Similarity=0.111 Sum_probs=60.9
Q ss_pred eEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc---chHHh----hcceEE
Q psy7411 354 LTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY---EMGKV----RESLGL 426 (474)
Q Consensus 354 Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~---~~~~i----r~~IG~ 426 (474)
++..+..+.++++++ +.+.+||.++++|+||+|||||+++|+|..+|+.|.+...|++-.. -.++. ....++
T Consensus 125 i~~~l~tG~~~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~~~~ev~~~~~~~~~~~~~~~tv 203 (422)
T TIGR02546 125 IDQPLPTGVRAIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGASADVNVIALIGERGREVREFIEHHLGEEGRKRSV 203 (422)
T ss_pred cccccCCCceeehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEccCCcCHHHHHHHHhccccccceE
Confidence 333443456899999 9999999999999999999999999999999999999886554321 11111 122456
Q ss_pred EcCCCCCCCCC
Q psy7411 427 CPQYDLLFEEL 437 (474)
Q Consensus 427 ~~Q~~~L~~~L 437 (474)
+.+.....+.+
T Consensus 204 vv~~~s~~p~~ 214 (422)
T TIGR02546 204 LVVSTSDRPSL 214 (422)
T ss_pred EEeccccCCHH
Confidence 77766555544
No 420
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=97.95 E-value=1.5e-05 Score=85.09 Aligned_cols=66 Identities=21% Similarity=0.313 Sum_probs=57.2
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecC
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIW 414 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~ 414 (474)
.++.+.+++.+..+.+++|.+ +.+.+||.++++|+||+|||||+++|+|..+|+.|.+...|++..
T Consensus 130 ~~~r~~i~~~l~TGiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg~ 195 (432)
T PRK06793 130 AFEREEITDVFETGIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERGR 195 (432)
T ss_pred chheechhhccCCCCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCcc
Confidence 356667777775556789985 999999999999999999999999999999999999988887654
No 421
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.93 E-value=8e-06 Score=77.87 Aligned_cols=42 Identities=33% Similarity=0.541 Sum_probs=36.0
Q ss_pred eeeeeeeEEeCCc-EEEEeCCCCCChhHHHHhhc--------CCCCCCeeE
Q psy7411 364 AVDNLTLDMYQNQ-ITVLLGHNGAGKSTTMSMLT--------GLIIPTSGT 405 (474)
Q Consensus 364 aL~~lsL~i~~Ge-i~gLLGpNGAGKTTLL~~L~--------GL~~PtsG~ 405 (474)
.+.++|+++.+|+ +++|.||||+||||++++++ |+..|....
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~ 66 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEG 66 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCcccccc
Confidence 4567999999995 79999999999999999999 877776543
No 422
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.90 E-value=7.9e-06 Score=78.77 Aligned_cols=38 Identities=21% Similarity=0.262 Sum_probs=35.3
Q ss_pred CceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCC
Q psy7411 361 GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGL 398 (474)
Q Consensus 361 ~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL 398 (474)
++.+.++++++..+|++++|.||||+||||++++++++
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~ 52 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALL 52 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999999999999999865
No 423
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.90 E-value=4.4e-06 Score=81.15 Aligned_cols=49 Identities=35% Similarity=0.506 Sum_probs=44.3
Q ss_pred ccccccCCCceeEEechhhhh--hHHHHHHhhCccCCcccccchhcccccc
Q psy7411 44 IAGLIIPTSGTAYIDGHDIWY--EMGKVRESLGLCPQYDLLFEELTVEDHL 92 (474)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (474)
+.+|-.|++|+++|||.++.. +..++|+.+||+.|+|.||+.+||.||+
T Consensus 48 lN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv 98 (240)
T COG1126 48 LNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENV 98 (240)
T ss_pred HHCCcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHH
Confidence 456789999999999987654 7899999999999999999999999994
No 424
>PRK09862 putative ATP-dependent protease; Provisional
Probab=97.89 E-value=9.9e-06 Score=87.97 Aligned_cols=63 Identities=19% Similarity=0.305 Sum_probs=57.2
Q ss_pred EEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecC
Q psy7411 351 LRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIW 414 (474)
Q Consensus 351 i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~ 414 (474)
+.++++.+ +.+.+++++++.+..|+.+.++||||+||||+++.|.|+.+|.+|+..+.+..+.
T Consensus 187 ~~d~~~v~-Gq~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~ 249 (506)
T PRK09862 187 QHDLSDVI-GQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAIL 249 (506)
T ss_pred ccCeEEEE-CcHHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhh
Confidence 45888888 5677999999999999999999999999999999999999999999998877664
No 425
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=97.87 E-value=2.1e-05 Score=84.10 Aligned_cols=70 Identities=19% Similarity=0.238 Sum_probs=56.3
Q ss_pred CceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCe---eEEEECCeecCcchHHh----hcceEEEcCCC
Q psy7411 361 GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTS---GTAYIDGHDIWYEMGKV----RESLGLCPQYD 431 (474)
Q Consensus 361 ~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~Pts---G~i~i~G~dI~~~~~~i----r~~IG~~~Q~~ 431 (474)
+.+++|.+ +++.+||+++++|+||+|||||+++|+|+.+|+. |.|-..|+++....++. .+..++++|..
T Consensus 162 GiraID~l-l~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~~~d~iv~g~Igerg~ev~e~~~~~~~~~~~~~tvVv~~~ 238 (455)
T PRK07960 162 GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVKDFIENILGAEGRARSVVIAAP 238 (455)
T ss_pred cceeeeec-ccccCCcEEEEECCCCCCccHHHHHHhCCCCCCEEEEEEEEECCeEHHHHHHhhcCcCCCceEEEEEEC
Confidence 45678777 9999999999999999999999999999999986 99999999885422221 23467777763
No 426
>PRK01889 GTPase RsgA; Reviewed
Probab=97.84 E-value=1.7e-05 Score=82.65 Aligned_cols=69 Identities=26% Similarity=0.307 Sum_probs=54.8
Q ss_pred eeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEEEcCCCCCCC
Q psy7411 365 VDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFE 435 (474)
Q Consensus 365 L~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~~Q~~~L~~ 435 (474)
++.+.-.+.+|++++++|+||+|||||+++|+|..+|+.|++..++..... ...++.+++++|...+++
T Consensus 185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~--tt~~~~l~~l~~~~~l~D 253 (356)
T PRK01889 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRH--TTTHRELHPLPSGGLLID 253 (356)
T ss_pred HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcc--hhhhccEEEecCCCeecC
Confidence 555555677899999999999999999999999999999999998754322 123456888888766654
No 427
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=97.83 E-value=2e-05 Score=83.76 Aligned_cols=76 Identities=22% Similarity=0.228 Sum_probs=59.5
Q ss_pred EEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcch---------HHhhcceE
Q psy7411 355 TKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEM---------GKVRESLG 425 (474)
Q Consensus 355 sk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~---------~~ir~~IG 425 (474)
++.+..+.+++|++ +.+.+||+++++|+||+|||||+++|++..+|+.|.+...|++.+... +.+++.+-
T Consensus 118 ~~~~~tGi~~iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~~~~~gvi~~~Ger~~ev~e~~~~~l~~~~~~~~v~ 196 (413)
T TIGR03497 118 RDPLETGIKAIDGL-LTIGKGQRVGIFAGSGVGKSTLLGMIARNAKADINVIALIGERGREVRDFIEKDLGEEGLKRSVV 196 (413)
T ss_pred hhhccccceeeeeE-EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccchHHHHHHHHHHhcccccceEEE
Confidence 34554456799999 999999999999999999999999999999999999988887654211 11234466
Q ss_pred EEcCCC
Q psy7411 426 LCPQYD 431 (474)
Q Consensus 426 ~~~Q~~ 431 (474)
++.+.+
T Consensus 197 v~~tsd 202 (413)
T TIGR03497 197 VVATSD 202 (413)
T ss_pred EEECCC
Confidence 776654
No 428
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=97.82 E-value=2.3e-05 Score=83.37 Aligned_cols=62 Identities=23% Similarity=0.215 Sum_probs=52.6
Q ss_pred EeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecC
Q psy7411 352 RGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIW 414 (474)
Q Consensus 352 ~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~ 414 (474)
..++..+..+..+++ .++.+.+||.++|+|+||+|||||+++|+++.+|+.|.+...|++-+
T Consensus 118 ~~i~~~l~tGi~aiD-~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~~~~~gvi~~iGer~~ 179 (418)
T TIGR03498 118 ARVGEPLDTGVRVID-TFLPLCRGQRLGIFAGSGVGKSTLLSMLARNTDADVVVIALVGERGR 179 (418)
T ss_pred cCcccccCCccEEEe-eeccccCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEeeech
Confidence 344455545567776 59999999999999999999999999999999999999998888654
No 429
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=97.81 E-value=2.9e-05 Score=82.49 Aligned_cols=63 Identities=19% Similarity=0.230 Sum_probs=53.0
Q ss_pred EEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeec
Q psy7411 350 QLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDI 413 (474)
Q Consensus 350 ~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI 413 (474)
+-..+++.|..+.++++.+ +.+.+||+++|+|+||+|||||+++|+++.+|+.+.+...|++-
T Consensus 113 ~R~~~~~~~~tGi~~id~l-~~i~~Gq~~~I~G~sG~GKTtLl~~I~~~~~~~~~vi~~iGer~ 175 (411)
T TIGR03496 113 KRAPIDEPLDVGVRAINGL-LTVGRGQRMGIFAGSGVGKSTLLGMMARYTEADVVVVGLIGERG 175 (411)
T ss_pred hccCcceEeeeeEEeecce-EEEecCcEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEEecCh
Confidence 3445666665457899999 99999999999999999999999999999999988777666653
No 430
>PRK09099 type III secretion system ATPase; Provisional
Probab=97.79 E-value=2.6e-05 Score=83.36 Aligned_cols=53 Identities=26% Similarity=0.278 Sum_probs=48.9
Q ss_pred CCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeec
Q psy7411 360 TGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDI 413 (474)
Q Consensus 360 ~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI 413 (474)
.+.++++++ +.+.+||+++++|+||+|||||+++++++..++.|.+...|+.-
T Consensus 149 TGi~~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d~~vi~~iGer~ 201 (441)
T PRK09099 149 TGVRIVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQCDVNVIALIGERG 201 (441)
T ss_pred CCceeccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccCh
Confidence 456799999 99999999999999999999999999999999999999888654
No 431
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.77 E-value=1.5e-05 Score=77.59 Aligned_cols=70 Identities=27% Similarity=0.233 Sum_probs=44.1
Q ss_pred EEEEeCCCCCChhHHHHhhcCCCCC--CeeEEEE---CCeecCcchHHhhcceEEEcCCCCCCCCCCHHHHHHHHHhcC
Q psy7411 377 ITVLLGHNGAGKSTTMSMLTGLIIP--TSGTAYI---DGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAKGK 450 (474)
Q Consensus 377 i~gLLGpNGAGKTTLL~~L~GL~~P--tsG~i~i---~G~dI~~~~~~ir~~IG~~~Q~~~L~~~LTV~E~L~~~~~lk 450 (474)
++|+.|+|||||||+++.|.+++.+ .++.+.+ +|.-.. . +.++..|.. |.....+.+.+...+.....++
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~~~--~-~~~~~~~~~-~~~g~p~~~d~~~l~~~L~~l~ 75 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFLYP--N-KELIERGLM-DRKGFPESYDMEALLKFLKDIK 75 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcccCc--H-HHHHHhhhh-hcCCCcccCCHHHHHHHHHHHH
Confidence 5799999999999999999999875 4565554 554221 1 122334544 4334445566666655554444
No 432
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=97.74 E-value=6.5e-05 Score=76.68 Aligned_cols=79 Identities=19% Similarity=0.132 Sum_probs=53.7
Q ss_pred eeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEEEcCCCC-CCCCCCHHHHHHHH
Q psy7411 368 LTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDL-LFEELTVEDHLQFF 446 (474)
Q Consensus 368 lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~~Q~~~-L~~~LTV~E~L~~~ 446 (474)
+++.++.|+.+++.||+||||||++++|+++.+|..|.+.+.. ..+.....+..+.+..+... -....|..+.+...
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied--~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~ 214 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIED--TREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSC 214 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcC--ccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHH
Confidence 5678889999999999999999999999999999999888853 22110011233455444321 13346777776554
Q ss_pred Hh
Q psy7411 447 AK 448 (474)
Q Consensus 447 ~~ 448 (474)
.+
T Consensus 215 Lr 216 (308)
T TIGR02788 215 LR 216 (308)
T ss_pred hc
Confidence 33
No 433
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=97.74 E-value=2.8e-05 Score=83.26 Aligned_cols=56 Identities=25% Similarity=0.321 Sum_probs=48.7
Q ss_pred EEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeec
Q psy7411 357 IYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDI 413 (474)
Q Consensus 357 ~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI 413 (474)
.+..+.+++|++ +.+.+||.++++|+||+|||||+++|+|..+|+.|.+...|++-
T Consensus 146 ~l~TGi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r~ 201 (440)
T TIGR01026 146 ILSTGVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERG 201 (440)
T ss_pred cccceeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeecc
Confidence 343446799999 99999999999999999999999999999999998877766654
No 434
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=97.74 E-value=2e-05 Score=76.46 Aligned_cols=71 Identities=23% Similarity=0.305 Sum_probs=46.9
Q ss_pred CceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEEEcCCCCCCCCCCHH
Q psy7411 361 GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVE 440 (474)
Q Consensus 361 ~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~~Q~~~L~~~LTV~ 440 (474)
.+.+.++++++..+ ++++|.||||+||||++|+++++.-.. . .|..+. .-+.+++++.| ++..+++.
T Consensus 17 ~~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l~--~---~g~~vp----~~~~~i~~~~~---i~~~~~~~ 83 (216)
T cd03284 17 EPFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALLA--Q---IGSFVP----ASKAEIGVVDR---IFTRIGAS 83 (216)
T ss_pred CceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHHh--c---cCCeec----cccceecceee---EeccCCch
Confidence 34588999999877 999999999999999999998643211 0 122221 11234555543 45666776
Q ss_pred HHHH
Q psy7411 441 DHLQ 444 (474)
Q Consensus 441 E~L~ 444 (474)
|++.
T Consensus 84 ~~ls 87 (216)
T cd03284 84 DDLA 87 (216)
T ss_pred hhhc
Confidence 6664
No 435
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=97.72 E-value=7.2e-06 Score=83.19 Aligned_cols=56 Identities=29% Similarity=0.503 Sum_probs=50.2
Q ss_pred cccccccCCCceeEEechhhhhhHHHHHHhhCccCCcccccchhccccccceeeee
Q psy7411 43 DIAGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAKW 98 (474)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 98 (474)
=|+++++|++|+++++|.++...-.++|+.+|||||+..+|+++||.||+.|++..
T Consensus 47 ~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~ 102 (301)
T TIGR03522 47 IITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGI 102 (301)
T ss_pred HHhCCCCCCceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHH
Confidence 36788899999999999999876678999999999999999999999999987654
No 436
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=97.72 E-value=1e-05 Score=77.94 Aligned_cols=75 Identities=35% Similarity=0.421 Sum_probs=56.6
Q ss_pred CchhhhhhhcCCCccccccceeeecccccccccCCCceeEEechhhhhh--HHHHHHhhCccCCcccccchhccccccce
Q psy7411 17 NSSELQDALTQPGAMKDYIAGVVFDDDIAGLIIPTSGTAYIDGHDIWYE--MGKVRESLGLCPQYDLLFEELTVEDHLQF 94 (474)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 94 (474)
|+-|.--.|-.-||=|--.- --++|++.||+|.+.+||.||..- .+.-|.-+||.||..|+|.+|||+||+.-
T Consensus 28 ~~GEiVGLLGPNGAGKTT~F-----ymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~LtV~dNi~~ 102 (243)
T COG1137 28 NSGEIVGLLGPNGAGKTTTF-----YMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMA 102 (243)
T ss_pred cCCcEEEEECCCCCCceeEE-----EEEEEEEecCCceEEECCcccccCChHHHhhcCcccccccchHhhcCcHHHHHHH
Confidence 44555556666676664221 236789999999999999998765 35566678899999999999999999754
Q ss_pred ee
Q psy7411 95 FA 96 (474)
Q Consensus 95 ~~ 96 (474)
-.
T Consensus 103 vl 104 (243)
T COG1137 103 VL 104 (243)
T ss_pred HH
Confidence 33
No 437
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=97.72 E-value=8.4e-06 Score=82.71 Aligned_cols=54 Identities=41% Similarity=0.645 Sum_probs=48.6
Q ss_pred ccccccCCCceeEEechhhhhhHHHHHHhhCccCCcccccchhccccccceeee
Q psy7411 44 IAGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAK 97 (474)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 97 (474)
|+++++|++|+++++|.++...-.++|+.+|||||++.+|+.+||.||+.|++.
T Consensus 39 l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~ 92 (302)
T TIGR01188 39 LTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENLEMMGR 92 (302)
T ss_pred HhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHHHHHHHH
Confidence 678899999999999999876666789999999999999999999999988654
No 438
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=97.71 E-value=6.4e-06 Score=85.32 Aligned_cols=54 Identities=30% Similarity=0.471 Sum_probs=49.3
Q ss_pred ccccccCCCceeEEechhhhhhHHHHHHhhCccCCcccccchhccccccceeee
Q psy7411 44 IAGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAK 97 (474)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 97 (474)
|+++++|++|+++|+|.++.+.-.++|+++|||||...+|.++||.||+.|++.
T Consensus 87 L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~ 140 (340)
T PRK13536 87 ILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGR 140 (340)
T ss_pred HHcCCCCCceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHH
Confidence 677889999999999999987777899999999999999999999999998764
No 439
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=97.70 E-value=3.2e-05 Score=82.56 Aligned_cols=61 Identities=23% Similarity=0.306 Sum_probs=52.0
Q ss_pred eEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc
Q psy7411 354 LTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY 415 (474)
Q Consensus 354 Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~ 415 (474)
++..+..+.++++++ +++.+||+++++|+||+|||||+++|++...++.+.+...|++-+.
T Consensus 137 i~~~l~tgi~aid~l-~~i~~Gq~~~i~G~sG~GKStLl~~i~~~~~~~v~vi~~iGergre 197 (434)
T PRK08472 137 IDEVFSVGVKSIDGL-LTCGKGQKLGIFAGSGVGKSTLMGMIVKGCLAPIKVVALIGERGRE 197 (434)
T ss_pred cceeccchhHHhhhc-ceecCCCEEEEECCCCCCHHHHHHHHhhccCCCEEEEEeeCccchh
Confidence 444443345699999 9999999999999999999999999999998999999888877653
No 440
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.69 E-value=3.2e-05 Score=77.89 Aligned_cols=54 Identities=28% Similarity=0.196 Sum_probs=38.9
Q ss_pred EEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEEEcCCC
Q psy7411 377 ITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYD 431 (474)
Q Consensus 377 i~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~~Q~~ 431 (474)
++|+.|+|||||||++++|++++++..|.+...+ +.....++.|+..|+.++++
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~D-d~~~~~~~~r~~~g~~~~~p 54 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLD-DYHSLDRKGRKETGITALDP 54 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECc-ccccCCHHHHHHhhcccccc
Confidence 4799999999999999999999999877655443 44332223345567766654
No 441
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.68 E-value=2.5e-05 Score=73.99 Aligned_cols=39 Identities=38% Similarity=0.510 Sum_probs=33.6
Q ss_pred eCCcEEEEeCCCCCChhHHHHhhcCCCC------------CCeeEEEECCeec
Q psy7411 373 YQNQITVLLGHNGAGKSTTMSMLTGLII------------PTSGTAYIDGHDI 413 (474)
Q Consensus 373 ~~Gei~gLLGpNGAGKTTLL~~L~GL~~------------PtsG~i~i~G~dI 413 (474)
++|++++++||+|||||||+++|++..+ |..|+ ++|.+.
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge--~~g~~~ 53 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGE--VDGVDY 53 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCC--cCCCee
Confidence 5899999999999999999999999875 77777 466664
No 442
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=97.67 E-value=3.5e-05 Score=75.88 Aligned_cols=53 Identities=26% Similarity=0.505 Sum_probs=38.7
Q ss_pred EEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEEC
Q psy7411 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYID 409 (474)
Q Consensus 349 I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~ 409 (474)
++++|. +.|. +...++ ..+ .+++|+|||||||||++.+|+++..+.+|+....
T Consensus 4 i~l~nf-~~~~-~~~~~~-----~~~-~~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~ 56 (247)
T cd03275 4 LELENF-KSYK-GRHVIG-----PFD-RFTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSK 56 (247)
T ss_pred EEEECc-cccC-CCeeec-----CCC-CeEEEECCCCCCHHHHHHHHHHHhCCCccccccc
Confidence 567776 5663 222232 223 4999999999999999999999988877776544
No 443
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=97.66 E-value=4e-05 Score=82.09 Aligned_cols=56 Identities=23% Similarity=0.339 Sum_probs=45.9
Q ss_pred EcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCe---eEEEECCeecC
Q psy7411 358 YKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTS---GTAYIDGHDIW 414 (474)
Q Consensus 358 y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~Pts---G~i~i~G~dI~ 414 (474)
+..+.+++|++ +.+.+||+++|+|+||+|||||+++++|+.+|+. |.+-..+.++.
T Consensus 152 l~TGi~aID~l-~~I~~GqrigI~G~sG~GKSTLl~~I~g~~~~dv~V~g~Ig~rg~ev~ 210 (451)
T PRK05688 152 LDVGIRSINGL-LTVGRGQRLGLFAGTGVGKSVLLGMMTRFTEADIIVVGLIGERGREVK 210 (451)
T ss_pred cccceeeecce-EEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEeCcCcHhHH
Confidence 33456899999 9999999999999999999999999999988873 54545554443
No 444
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.66 E-value=3.7e-05 Score=73.33 Aligned_cols=32 Identities=19% Similarity=0.224 Sum_probs=27.3
Q ss_pred eeeeeEEeCCcEEEEeCCCCCChhHHHHhhcC
Q psy7411 366 DNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 366 ~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~G 397 (474)
-..++++.+|++++|+||||+||||+++++++
T Consensus 20 ~~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 20 VPNDINLGSGRLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred EeeeEEEcCCeEEEEECCCCCccHHHHHHHHH
Confidence 44555666899999999999999999999993
No 445
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=97.65 E-value=8.7e-05 Score=86.12 Aligned_cols=42 Identities=24% Similarity=0.440 Sum_probs=36.3
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhh
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSML 395 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L 395 (474)
.+++++++ ...|+++|+++++||++++.|+||||||||++.+
T Consensus 614 ~L~v~~l~------~~~L~~isl~Ip~GeivgVtGvsGSGKSTLl~~~ 655 (943)
T PRK00349 614 FLKLKGAR------ENNLKNVDVEIPLGKFTCVTGVSGSGKSTLINET 655 (943)
T ss_pred eEEecCCc------cCCcCceEEEEeCCCEEEEEcCCCCCHHHHHHHH
Confidence 46777765 1359999999999999999999999999999865
No 446
>PRK00098 GTPase RsgA; Reviewed
Probab=97.62 E-value=6.6e-05 Score=76.32 Aligned_cols=74 Identities=23% Similarity=0.268 Sum_probs=53.1
Q ss_pred CCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEE---CCeecCcchHHh-hcceEEEcCCCCCC----CCCCHHHHHHH
Q psy7411 374 QNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYI---DGHDIWYEMGKV-RESLGLCPQYDLLF----EELTVEDHLQF 445 (474)
Q Consensus 374 ~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i---~G~dI~~~~~~i-r~~IG~~~Q~~~L~----~~LTV~E~L~~ 445 (474)
+|++++++|+||+|||||+|.|.|...+..|++.. .|+...+..... ....|++.+.+.+. ..++..|....
T Consensus 163 ~gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~ 242 (298)
T PRK00098 163 AGKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGGGLLIDTPGFSSFGLHDLEAEELEHY 242 (298)
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCCcEEEECCCcCccCCCCCCHHHHHHH
Confidence 58899999999999999999999999999999986 343333221111 12357888887765 45677666555
Q ss_pred HH
Q psy7411 446 FA 447 (474)
Q Consensus 446 ~~ 447 (474)
+.
T Consensus 243 f~ 244 (298)
T PRK00098 243 FP 244 (298)
T ss_pred HH
Confidence 54
No 447
>PLN02318 phosphoribulokinase/uridine kinase
Probab=97.60 E-value=6.2e-05 Score=82.84 Aligned_cols=66 Identities=15% Similarity=0.125 Sum_probs=53.4
Q ss_pred cEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEEEcCCCCCCCCCCHHHHHHHHHh
Q psy7411 376 QITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAK 448 (474)
Q Consensus 376 ei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~~Q~~~L~~~LTV~E~L~~~~~ 448 (474)
-++||.|||||||||+++.|+++. |..|.+..+|+.-. .+.+++.+|++.+++..++.+||.-...
T Consensus 66 iIIGIaGpSGSGKTTLAk~LaglL-p~vgvIsmDdy~~~------~~~i~~nfD~P~a~D~d~L~enL~~Lr~ 131 (656)
T PLN02318 66 ILVGVAGPSGAGKTVFTEKVLNFM-PSIAVISMDNYNDS------SRIIDGNFDDPRLTDYDTLLDNIHDLKA 131 (656)
T ss_pred EEEEEECCCCCcHHHHHHHHHhhC-CCcEEEEEcceecc------hhhhCccCCChhhcchhHHHHHHHHHhC
Confidence 489999999999999999999987 67899999997521 1235677888888888899999866544
No 448
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.60 E-value=0.00012 Score=67.99 Aligned_cols=65 Identities=18% Similarity=0.209 Sum_probs=44.5
Q ss_pred CcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEE-----------CCeecCc----ch-HHh-hcceEEEcCCCCCCCCC
Q psy7411 375 NQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYI-----------DGHDIWY----EM-GKV-RESLGLCPQYDLLFEEL 437 (474)
Q Consensus 375 Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i-----------~G~dI~~----~~-~~i-r~~IG~~~Q~~~L~~~L 437 (474)
|++++++|||||||||+++.|++.+.+. |.+.+ +|.+... .. ... .+.++...|...++...
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 79 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGD-PRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYGI 79 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCcC-CcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCccccC
Confidence 5789999999999999999999987654 44433 3433321 11 112 23488889988777776
Q ss_pred CHH
Q psy7411 438 TVE 440 (474)
Q Consensus 438 TV~ 440 (474)
++.
T Consensus 80 ~~~ 82 (179)
T TIGR02322 80 PAE 82 (179)
T ss_pred hHH
Confidence 664
No 449
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.59 E-value=2.1e-05 Score=78.21 Aligned_cols=51 Identities=39% Similarity=0.486 Sum_probs=46.7
Q ss_pred ccccccCCCceeEEechhhhh-hHHHHHHhhCccCCcccccchhccccccce
Q psy7411 44 IAGLIIPTSGTAYIDGHDIWY-EMGKVRESLGLCPQYDLLFEELTVEDHLQF 94 (474)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 94 (474)
|-.|+.||+|+++|||.|+.+ +..|+|+++||+=|.-.||+.+||+||+.+
T Consensus 47 INrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~ 98 (309)
T COG1125 47 INRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIAT 98 (309)
T ss_pred HhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHHHHHHh
Confidence 456899999999999999876 688999999999999999999999999654
No 450
>PRK05922 type III secretion system ATPase; Validated
Probab=97.59 E-value=0.0001 Score=78.77 Aligned_cols=57 Identities=26% Similarity=0.321 Sum_probs=48.4
Q ss_pred EEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeec
Q psy7411 356 KIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDI 413 (474)
Q Consensus 356 k~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI 413 (474)
..+..+.+++|.+ +.+.+||.++++|+||+|||||+++|++..+++.|.+...|+.-
T Consensus 139 e~l~TGIr~ID~l-l~I~~GqrigI~G~nG~GKSTLL~~Ia~~~~~d~gvi~liGerg 195 (434)
T PRK05922 139 EIFPTGIKAIDAF-LTLGKGQRIGVFSEPGSGKSSLLSTIAKGSKSTINVIALIGERG 195 (434)
T ss_pred eecCCCceeecce-EEEcCCcEEEEECCCCCChHHHHHHHhccCCCCceEEEEeCCCC
Confidence 3343445688887 99999999999999999999999999999999999887766643
No 451
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=97.58 E-value=0.00027 Score=86.30 Aligned_cols=40 Identities=30% Similarity=0.513 Sum_probs=34.9
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHH
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMS 393 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~ 393 (474)
.+++++++ ...|+++|+++++||++++.|+||||||||++
T Consensus 600 ~L~l~~~~------~~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~ 639 (1809)
T PRK00635 600 TLTLSKAT------KHNLKDLTISLPLGRLTVVTGVSGSGKSSLIN 639 (1809)
T ss_pred eEEEeccc------cCCccceEEEEcCCcEEEEEcCCCCCHHHHHH
Confidence 46666664 23799999999999999999999999999999
No 452
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.57 E-value=5.4e-05 Score=74.04 Aligned_cols=48 Identities=17% Similarity=0.189 Sum_probs=41.5
Q ss_pred ceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcC-CCCCCeeEEEEC
Q psy7411 362 KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG-LIIPTSGTAYID 409 (474)
Q Consensus 362 ~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~G-L~~PtsG~i~i~ 409 (474)
+.+.+++++++.+|+++++.||||+||||+++++++ .+.+..|.....
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a 66 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPA 66 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEc
Confidence 468999999999999999999999999999999999 556777764433
No 453
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.57 E-value=0.0001 Score=77.84 Aligned_cols=55 Identities=16% Similarity=0.289 Sum_probs=49.0
Q ss_pred ccEEEEeeEEEEcCCceeee-----------eeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCC
Q psy7411 347 SGIQLRGLTKIYKTGKKAVD-----------NLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIP 401 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~~~~aL~-----------~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~P 401 (474)
..+.++||+..|++.+.+|+ |+.+.+.+||..+++||.|+||||+++.++..+..
T Consensus 129 ~ri~Fe~LTf~YP~er~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~~ 194 (415)
T TIGR00767 129 NRVLFENLTPLYPNERLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAITR 194 (415)
T ss_pred CCeEEEEeeecCCCccceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhcc
Confidence 35899999999976667886 99999999999999999999999999999986543
No 454
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=97.51 E-value=2.5e-05 Score=74.83 Aligned_cols=54 Identities=35% Similarity=0.634 Sum_probs=47.6
Q ss_pred cccccccCCCceeEEechhhhhhHHHHHHhhCccCCcccccchhccccccceee
Q psy7411 43 DIAGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFA 96 (474)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 96 (474)
=|+++++|++|+++++|.++...-.+.|+.+||+||+..+|+.+||.||+.+..
T Consensus 50 ~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~ 103 (218)
T cd03266 50 MLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFA 103 (218)
T ss_pred HHhCCcCCCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHHHHHHH
Confidence 357888999999999999987666778999999999999999999999987643
No 455
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.48 E-value=2.1e-05 Score=81.39 Aligned_cols=54 Identities=33% Similarity=0.454 Sum_probs=48.8
Q ss_pred ccccccCCCceeEEechhhhhhHHHHHHhhCccCCcccccchhccccccceeeee
Q psy7411 44 IAGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAKW 98 (474)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 98 (474)
||||..||+|+++|||.||.+ +.--+|.+||++|...||+-+||.||+.|=.++
T Consensus 49 IAGLe~~~~G~I~i~g~~vt~-l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~ 102 (338)
T COG3839 49 IAGLEEPTSGEILIDGRDVTD-LPPEKRGIAMVFQNYALYPHMTVYENIAFGLKL 102 (338)
T ss_pred HhCCCCCCCceEEECCEECCC-CChhHCCEEEEeCCccccCCCcHHHHhhhhhhh
Confidence 688999999999999999876 667789999999999999999999999886554
No 456
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=97.47 E-value=7.9e-05 Score=69.25 Aligned_cols=49 Identities=31% Similarity=0.426 Sum_probs=40.7
Q ss_pred eeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcC--------CCCCCeeEEEECCeec
Q psy7411 364 AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG--------LIIPTSGTAYIDGHDI 413 (474)
Q Consensus 364 aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~G--------L~~PtsG~i~i~G~dI 413 (474)
+++++++..+++++ +++|++|+|||||++.+++ ...|+.+++.+++.++
T Consensus 9 ~~~~~~~~~~~~ki-~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~~~i~~~~~~~ 65 (190)
T cd00879 9 VLSSLGLYNKEAKI-LFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELTIGNIKF 65 (190)
T ss_pred HHHHhhcccCCCEE-EEECCCCCCHHHHHHHHhcCCCcccCCccCcceEEEEECCEEE
Confidence 57778888777777 9999999999999999998 4566778888887654
No 457
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.45 E-value=0.00013 Score=82.56 Aligned_cols=49 Identities=22% Similarity=0.306 Sum_probs=38.8
Q ss_pred eeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCee--EEEECCee
Q psy7411 364 AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSG--TAYIDGHD 412 (474)
Q Consensus 364 aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG--~i~i~G~d 412 (474)
++++.++.+.+|++++++||||+||||++..|++.+....| .|.+-..|
T Consensus 174 il~~~~~~~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~D 224 (767)
T PRK14723 174 VLRDEDALLAQGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTD 224 (767)
T ss_pred hccCCCcccCCCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCc
Confidence 56667777788999999999999999999999998766655 45444333
No 458
>PLN02796 D-glycerate 3-kinase
Probab=97.44 E-value=4.2e-05 Score=79.35 Aligned_cols=52 Identities=21% Similarity=0.157 Sum_probs=42.5
Q ss_pred eeeeeeeeEE---eCCcE-----EEEeCCCCCChhHHHHhhcCCCCCC---eeEEEECCeecC
Q psy7411 363 KAVDNLTLDM---YQNQI-----TVLLGHNGAGKSTTMSMLTGLIIPT---SGTAYIDGHDIW 414 (474)
Q Consensus 363 ~aL~~lsL~i---~~Gei-----~gLLGpNGAGKTTLL~~L~GL~~Pt---sG~i~i~G~dI~ 414 (474)
.++++++..+ ++|+. +||.|++||||||+++.|.+++++. .|.+.++|..+.
T Consensus 80 ~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt 142 (347)
T PLN02796 80 WCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLT 142 (347)
T ss_pred HHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccc
Confidence 4566666665 45665 9999999999999999999999875 688999998765
No 459
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=97.43 E-value=3e-05 Score=81.07 Aligned_cols=53 Identities=28% Similarity=0.438 Sum_probs=45.2
Q ss_pred ccccccCCCceeEEechhhhh-hHHHH----HHhhCccCCcccccchhccccccceee
Q psy7411 44 IAGLIIPTSGTAYIDGHDIWY-EMGKV----RESLGLCPQYDLLFEELTVEDHLQFFA 96 (474)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~f~~ 96 (474)
|+++++|++|++++||.|+.. +-.++ |+++||+||++.||+.+||.||+.|-.
T Consensus 39 L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~TV~eNi~~~~ 96 (363)
T TIGR01186 39 LNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMTILQNTSLGP 96 (363)
T ss_pred HhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCCHHHHHHHHH
Confidence 678899999999999999864 23344 678999999999999999999998753
No 460
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=97.41 E-value=3.2e-05 Score=78.47 Aligned_cols=53 Identities=30% Similarity=0.503 Sum_probs=47.1
Q ss_pred ccccccCCCceeEEechhhhhhHHHHHHhhCccCCcccccchhccccccceee
Q psy7411 44 IAGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFA 96 (474)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 96 (474)
|+++++|++|+++++|.++...-.+.|+++||+||+..+|+++||.||+.+++
T Consensus 50 l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~ 102 (303)
T TIGR01288 50 LLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFG 102 (303)
T ss_pred HhCCCCCCceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcHHHHHHHHH
Confidence 57888999999999999986655678999999999999999999999998754
No 461
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=97.41 E-value=0.00037 Score=72.84 Aligned_cols=60 Identities=18% Similarity=0.196 Sum_probs=40.9
Q ss_pred eCCcEEEEeCCCCCChhHHHHhhcCCCCC--Cee-EEEECCeecCcchHHhhcceEEEcCCCC
Q psy7411 373 YQNQITVLLGHNGAGKSTTMSMLTGLIIP--TSG-TAYIDGHDIWYEMGKVRESLGLCPQYDL 432 (474)
Q Consensus 373 ~~Gei~gLLGpNGAGKTTLL~~L~GL~~P--tsG-~i~i~G~dI~~~~~~ir~~IG~~~Q~~~ 432 (474)
+++..+.+.||+||||||++++|++.+.+ ..+ .+...+.++....+..++..+.+.|...
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v 194 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSEI 194 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeeec
Confidence 57899999999999999999999998743 333 5544443442233334444577777643
No 462
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.40 E-value=5.5e-05 Score=72.46 Aligned_cols=52 Identities=31% Similarity=0.447 Sum_probs=45.4
Q ss_pred ccccccCCCceeEEechhhhh----hHHHHHHhhCccCCcccccchhcccccccee
Q psy7411 44 IAGLIIPTSGTAYIDGHDIWY----EMGKVRESLGLCPQYDLLFEELTVEDHLQFF 95 (474)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 95 (474)
|+++++|++|+++++|.++.+ +..+.|+++||+||+..+|+++||.||+.+.
T Consensus 49 l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~ 104 (216)
T TIGR00960 49 ILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFP 104 (216)
T ss_pred HhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCccccccccHHHHHHHH
Confidence 678889999999999998853 3456889999999999999999999998764
No 463
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.40 E-value=0.00012 Score=57.74 Aligned_cols=38 Identities=29% Similarity=0.514 Sum_probs=29.1
Q ss_pred eeeeeeEEeC-CcEEEEeCCCCCChhHHHHhhcCCCCCC
Q psy7411 365 VDNLTLDMYQ-NQITVLLGHNGAGKSTTMSMLTGLIIPT 402 (474)
Q Consensus 365 L~~lsL~i~~-Gei~gLLGpNGAGKTTLL~~L~GL~~Pt 402 (474)
.++-.+++.+ |+++.+.|+||+||||++.++.-++-|.
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~~ 50 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYGN 50 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 3445556654 5699999999999999999887765554
No 464
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.40 E-value=0.00012 Score=70.22 Aligned_cols=56 Identities=20% Similarity=0.202 Sum_probs=38.8
Q ss_pred EEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcc-hHHhhcceEEEcCCCCC
Q psy7411 377 ITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYE-MGKVRESLGLCPQYDLL 433 (474)
Q Consensus 377 i~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~-~~~ir~~IG~~~Q~~~L 433 (474)
.++++|++||||||+++.+.+.+++..|.. +...+.... ..+..++.|+++|+..+
T Consensus 3 ~i~i~G~~GsGKTTll~~l~~~l~~~~~~~-~~~~d~~~~~~~~~~~~~~~~~~~~~~ 59 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALTRALRQKYQLA-VITNDIYTQEDAEFLVKNSALPPERIL 59 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCcCCcEE-EEeCCcCChhHHHHHHHcCCCCcCcee
Confidence 578999999999999999999888865544 444454332 22333456777776543
No 465
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.37 E-value=0.0002 Score=86.23 Aligned_cols=54 Identities=33% Similarity=0.546 Sum_probs=40.6
Q ss_pred CcEEEEeCCCCCChhHHHHhh----cCCCCCC-eeEEEECCeecCcchHHhhcceEEEcC
Q psy7411 375 NQITVLLGHNGAGKSTTMSML----TGLIIPT-SGTAYIDGHDIWYEMGKVRESLGLCPQ 429 (474)
Q Consensus 375 Gei~gLLGpNGAGKTTLL~~L----~GL~~Pt-sG~i~i~G~dI~~~~~~ir~~IG~~~Q 429 (474)
..+++|+|||||||||++.+| +|..+|. .|.+.+.+.++... ...+..+.+.++
T Consensus 28 ~~~~~I~G~NGaGKTTil~ai~~al~G~~~~~~~g~~~i~~~~~~~~-~~~~a~V~l~F~ 86 (1311)
T TIGR00606 28 SPLTILVGPNGAGKTTIIECLKYICTGDFPPGTKGNTFVHDPKVAQE-TDVRAQIRLQFR 86 (1311)
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCceEecCCCcCcc-HhhhheeEEEEE
Confidence 359999999999999999998 6999996 78888887665432 233444555553
No 466
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=97.37 E-value=5.3e-05 Score=72.17 Aligned_cols=53 Identities=26% Similarity=0.363 Sum_probs=46.3
Q ss_pred cccccccCCCceeEEechhhhhhHHHHHHhhCccCCcccccchhccccccceee
Q psy7411 43 DIAGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFA 96 (474)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 96 (474)
=|+++++|++|+++++|.++... .+.|+.+||+||+..+|+.+||.||+.++.
T Consensus 45 ~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~ 97 (208)
T cd03268 45 IILGLIKPDSGEITFDGKSYQKN-IEALRRIGALIEAPGFYPNLTARENLRLLA 97 (208)
T ss_pred HHhCCcCCCceEEEECCCcccch-HHHHhhEEEecCCCccCccCcHHHHHHHHH
Confidence 36678899999999999998654 677889999999999999999999987654
No 467
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=97.36 E-value=4.2e-05 Score=70.91 Aligned_cols=62 Identities=21% Similarity=0.205 Sum_probs=45.8
Q ss_pred eCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhh-cceEEEcCCCCCCCCCCHHHHHHHHH
Q psy7411 381 LGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVR-ESLGLCPQYDLLFEELTVEDHLQFFA 447 (474)
Q Consensus 381 LGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir-~~IG~~~Q~~~L~~~LTV~E~L~~~~ 447 (474)
+|++||||||++++|++.+ |.+.++|..+.. ...++ ...|+.+|+....+.+++.++..+..
T Consensus 1 ~G~sGsGKSTla~~la~~l----~~~~~~~d~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 63 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQL----HAAFLDGDFLHP-RRNIEKMASGEPLNDDDRKPWLQALNDAAFAM 63 (163)
T ss_pred CCCCCCcHHHHHHHHHHHh----CCeEEeCccCCc-hhhhccccCCCCCChhhHHHHHHHHHHHHHHH
Confidence 5999999999999999987 668888844422 22233 34688888877777788888887753
No 468
>PRK06820 type III secretion system ATPase; Validated
Probab=97.36 E-value=0.00025 Score=75.98 Aligned_cols=58 Identities=24% Similarity=0.318 Sum_probs=48.0
Q ss_pred eEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCee
Q psy7411 354 LTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHD 412 (474)
Q Consensus 354 Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~d 412 (474)
++..+..+.+++|.+ +++.+||.++|+|+||+|||||++++++..+|+.+.+-.-|++
T Consensus 143 ~~~~l~TGi~aID~l-~~i~~Gqri~I~G~sG~GKStLl~~I~~~~~~dv~V~~~iGer 200 (440)
T PRK06820 143 IEQMLTTGIRAIDGI-LSCGEGQRIGIFAAAGVGKSTLLGMLCADSAADVMVLALIGER 200 (440)
T ss_pred chhhccCCCceecce-EEecCCCEEEEECCCCCChHHHHHHHhccCCCCEEEEEEEccC
Confidence 334444457899999 9999999999999999999999999999999988655445554
No 469
>PRK03846 adenylylsulfate kinase; Provisional
Probab=97.36 E-value=0.00013 Score=69.44 Aligned_cols=56 Identities=21% Similarity=0.296 Sum_probs=43.0
Q ss_pred eCCcEEEEeCCCCCChhHHHHhhcCCCCCC-eeEEEECCeecCcchHHhhcceEEEcCCC
Q psy7411 373 YQNQITVLLGHNGAGKSTTMSMLTGLIIPT-SGTAYIDGHDIWYEMGKVRESLGLCPQYD 431 (474)
Q Consensus 373 ~~Gei~gLLGpNGAGKTTLL~~L~GL~~Pt-sG~i~i~G~dI~~~~~~ir~~IG~~~Q~~ 431 (474)
++|++++++|+|||||||+.+.|.+.+.+. .|.+.++|.++... +...+++.+|+.
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~---~~~~~~~~~~~~ 78 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHG---LCSDLGFSDADR 78 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhh---hhhcCCcCcccH
Confidence 578899999999999999999999976554 46899998776532 223467777764
No 470
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=97.34 E-value=0.00028 Score=75.39 Aligned_cols=41 Identities=27% Similarity=0.388 Sum_probs=37.8
Q ss_pred CceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCC
Q psy7411 361 GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPT 402 (474)
Q Consensus 361 ~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~Pt 402 (474)
+.++++.+ +.+.+||+++++|+||+|||||+++|++...++
T Consensus 149 Gi~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d 189 (444)
T PRK08972 149 GVRAINAM-LTVGKGQRMGLFAGSGVGKSVLLGMMTRGTTAD 189 (444)
T ss_pred cceeecce-EEEcCCCEEEEECCCCCChhHHHHHhccCCCCC
Confidence 45688888 999999999999999999999999999988885
No 471
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.31 E-value=0.00011 Score=72.02 Aligned_cols=54 Identities=15% Similarity=0.236 Sum_probs=43.5
Q ss_pred EEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHH-HHhhcCCCCCCeeEEEECCee
Q psy7411 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTT-MSMLTGLIIPTSGTAYIDGHD 412 (474)
Q Consensus 349 I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTL-L~~L~GL~~PtsG~i~i~G~d 412 (474)
+.+.+|.+.+++ .+++|+++.+.|+||+||||+ ++++.++.++....+++..+.
T Consensus 8 ~~~~~ld~~l~g----------gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~ 62 (230)
T PRK08533 8 LSRDELHKRLGG----------GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQL 62 (230)
T ss_pred EEEeeeehhhCC----------CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 456677777643 278999999999999999999 699999888777778887544
No 472
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=97.30 E-value=6.4e-05 Score=78.05 Aligned_cols=53 Identities=30% Similarity=0.348 Sum_probs=46.1
Q ss_pred ccccccCCCceeEEechhhhh----hHHHHHHhhCccCCcccccchhccccccceee
Q psy7411 44 IAGLIIPTSGTAYIDGHDIWY----EMGKVRESLGLCPQYDLLFEELTVEDHLQFFA 96 (474)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 96 (474)
|+++++|++|++++||.++.. +..+.|+++||+||++.||+.+||.||+.|..
T Consensus 51 I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~ 107 (343)
T TIGR02314 51 VNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPL 107 (343)
T ss_pred HhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHH
Confidence 568889999999999999853 34567899999999999999999999998753
No 473
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.29 E-value=0.00028 Score=68.89 Aligned_cols=36 Identities=22% Similarity=0.266 Sum_probs=32.7
Q ss_pred CCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhh
Q psy7411 360 TGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSML 395 (474)
Q Consensus 360 ~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L 395 (474)
+.+.+.+|++++..++++++|.||||+||||+++++
T Consensus 15 ~~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i 50 (222)
T cd03285 15 DVAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQI 50 (222)
T ss_pred CCCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHH
Confidence 345689999999999999999999999999999985
No 474
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.28 E-value=6.9e-05 Score=72.09 Aligned_cols=53 Identities=36% Similarity=0.434 Sum_probs=46.1
Q ss_pred ccccccCCCceeEEechhhhhhHHHHHHhhCccCCcccccchhccccccceee
Q psy7411 44 IAGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFA 96 (474)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 96 (474)
|+++++|++|+++++|.++...-.+.|+++||+||+..+++++||.||+.+..
T Consensus 46 i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~ 98 (220)
T cd03265 46 LTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHA 98 (220)
T ss_pred HhCCCCCCceEEEECCEecCcChHHHhhcEEEecCCccccccCcHHHHHHHHH
Confidence 56788999999999999876544677889999999999999999999987753
No 475
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.28 E-value=8.2e-05 Score=70.69 Aligned_cols=52 Identities=19% Similarity=0.277 Sum_probs=46.6
Q ss_pred ccccccCCCceeEEechhhhhhHHHHHHhhCccCCcccccchhcccccccee
Q psy7411 44 IAGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFF 95 (474)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 95 (474)
|+++++|++|++++||.++.....+.|+++||+||...+++.+||.+|+.|.
T Consensus 47 i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~ 98 (200)
T PRK13540 47 IAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHRSGINPYLTLRENCLYD 98 (200)
T ss_pred HhcCCCCCCeeEEECCCccccCHHHHHhheEEeccccccCcCCCHHHHHHHH
Confidence 6778899999999999998765567889999999999999999999998875
No 476
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.28 E-value=0.00018 Score=75.51 Aligned_cols=38 Identities=26% Similarity=0.326 Sum_probs=33.4
Q ss_pred ceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCC
Q psy7411 362 KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLI 399 (474)
Q Consensus 362 ~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~ 399 (474)
..++++.++.+.+|++++++||||+||||++..|++..
T Consensus 124 l~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 124 LPVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred chhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 35677788889999999999999999999999999854
No 477
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.27 E-value=0.00026 Score=85.45 Aligned_cols=47 Identities=34% Similarity=0.393 Sum_probs=40.2
Q ss_pred eeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCee
Q psy7411 365 VDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHD 412 (474)
Q Consensus 365 L~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~d 412 (474)
+.+..|++.+| +++|+|+|||||||+|++|++++.|+.|.+.+++.+
T Consensus 18 ~~~~~~~f~~~-~~~l~G~NGaGKSTll~ai~~~l~~~~~~~~f~~~~ 64 (1486)
T PRK04863 18 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTT 64 (1486)
T ss_pred ccceEEEecCC-eEEEECCCCCCHHHHHHHHHccccCCCCeEEECCcc
Confidence 44556777765 999999999999999999999999999998888654
No 478
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.25 E-value=7.8e-05 Score=72.44 Aligned_cols=52 Identities=40% Similarity=0.613 Sum_probs=45.2
Q ss_pred ccccccCCCceeEEechhhhh----hHHHHHHhhCccCCcccccchhcccccccee
Q psy7411 44 IAGLIIPTSGTAYIDGHDIWY----EMGKVRESLGLCPQYDLLFEELTVEDHLQFF 95 (474)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 95 (474)
|+++++|++|+++++|.++.. +..++|+.+||+||++.+|+++||.||+.+.
T Consensus 46 l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~ 101 (235)
T cd03261 46 IVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFP 101 (235)
T ss_pred HhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCcHHHHHHHH
Confidence 578889999999999998753 2356789999999999999999999998765
No 479
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=97.25 E-value=0.00034 Score=63.69 Aligned_cols=38 Identities=37% Similarity=0.582 Sum_probs=32.3
Q ss_pred cEEEEeCCCCCChhHHHHhhcCC----CCCCee----EEEECCeec
Q psy7411 376 QITVLLGHNGAGKSTTMSMLTGL----IIPTSG----TAYIDGHDI 413 (474)
Q Consensus 376 ei~gLLGpNGAGKTTLL~~L~GL----~~PtsG----~i~i~G~dI 413 (474)
-.++++|++|+|||||++.++|. ..|+.| .+..+|.++
T Consensus 15 ~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~i~~~~~~~ 60 (173)
T cd04155 15 PRILILGLDNAGKTTILKQLASEDISHITPTQGFNIKTVQSDGFKL 60 (173)
T ss_pred cEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEE
Confidence 34789999999999999999996 568888 777777765
No 480
>PRK06936 type III secretion system ATPase; Provisional
Probab=97.25 E-value=0.00044 Score=74.01 Aligned_cols=51 Identities=24% Similarity=0.261 Sum_probs=42.8
Q ss_pred CceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCee
Q psy7411 361 GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHD 412 (474)
Q Consensus 361 ~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~d 412 (474)
+.++++++ +.+.+||.++|+|+||+||||+++++++...++---+-.-|+.
T Consensus 149 Gi~vid~l-~~i~~Gq~~~I~G~sG~GKStLl~~Ia~~~~~dv~V~~liGER 199 (439)
T PRK06936 149 GVRVIDGL-LTCGEGQRMGIFAAAGGGKSTLLASLIRSAEVDVTVLALIGER 199 (439)
T ss_pred Ccceeeee-EEecCCCEEEEECCCCCChHHHHHHHhcCCCCCEEEEEEEccC
Confidence 45799999 9999999999999999999999999999998875333334444
No 481
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.25 E-value=9.8e-05 Score=69.63 Aligned_cols=56 Identities=38% Similarity=0.536 Sum_probs=49.4
Q ss_pred eecccccccccCCCceeEEechhhhh-hHHHHHHhhCccCCcccccchhcccccccee
Q psy7411 39 VFDDDIAGLIIPTSGTAYIDGHDIWY-EMGKVRESLGLCPQYDLLFEELTVEDHLQFF 95 (474)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 95 (474)
++-.-+|+|+.||+|+++..|.||.. +-.+.|++|.||-|.+-||.| |||+|+.|=
T Consensus 44 tllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~-tVeDNlifP 100 (223)
T COG4619 44 TLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGD-TVEDNLIFP 100 (223)
T ss_pred HHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCcccccc-chhhccccc
Confidence 34456899999999999999999864 678899999999999999987 999998874
No 482
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.25 E-value=8.9e-05 Score=71.84 Aligned_cols=52 Identities=35% Similarity=0.460 Sum_probs=44.9
Q ss_pred ccccccCCCceeEEechhhhh----hHHHHHHhhCccCCcccccchhcccccccee
Q psy7411 44 IAGLIIPTSGTAYIDGHDIWY----EMGKVRESLGLCPQYDLLFEELTVEDHLQFF 95 (474)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 95 (474)
|+++++|++|+++++|.++.. +..+.|+.+||+||+..+|+.+||.||+.+.
T Consensus 51 l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~ 106 (233)
T cd03258 51 INGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALP 106 (233)
T ss_pred HhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHH
Confidence 678889999999999999753 2345688999999999999999999998764
No 483
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=97.25 E-value=0.00024 Score=86.62 Aligned_cols=54 Identities=17% Similarity=0.248 Sum_probs=42.5
Q ss_pred EEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEEC
Q psy7411 351 LRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYID 409 (474)
Q Consensus 351 i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~ 409 (474)
..+++..+ ...+.++++++++++||++++.|+||||||||+..+ +.+ .|++.+.
T Consensus 938 ~~~i~i~~-~~~~~lk~isl~i~~gei~~itG~nGsGKStL~~~~--L~~--~G~~~~~ 991 (1809)
T PRK00635 938 PADITIKN-AYQHNLKHIDLSLPRNALTAVTGPSASGKHSLVFDI--LYA--AGNIAYA 991 (1809)
T ss_pred cceEEEec-cccccccceeEEecCCcEEEEECCCCCChhHHHHHH--HHh--hccEeee
Confidence 45566655 334579999999999999999999999999988766 433 7887654
No 484
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=97.24 E-value=5.7e-05 Score=78.69 Aligned_cols=53 Identities=38% Similarity=0.485 Sum_probs=45.8
Q ss_pred ccccccCCCceeEEechhhhhhHHHHHHhhCccCCcccccchhccccccceeee
Q psy7411 44 IAGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAK 97 (474)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 97 (474)
|+|+..|++|++++||.++.. +..-|+.+||+||+..||+.+||.||+.|...
T Consensus 50 iaGl~~p~~G~I~i~g~~~~~-~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~ 102 (353)
T TIGR03265 50 IAGLERQTAGTIYQGGRDITR-LPPQKRDYGIVFQSYALFPNLTVADNIAYGLK 102 (353)
T ss_pred HHCCCCCCceEEEECCEECCC-CCHHHCCEEEEeCCcccCCCCcHHHHHHHHHH
Confidence 577889999999999998853 44457889999999999999999999988654
No 485
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=97.24 E-value=8.9e-05 Score=71.13 Aligned_cols=53 Identities=55% Similarity=0.982 Sum_probs=46.5
Q ss_pred ccccccCCCceeEEechhhhhhHHHHHHhhCccCCcccccchhccccccceee
Q psy7411 44 IAGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFA 96 (474)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 96 (474)
|+++++|++|+++++|.++...-.+.|+++||+||...+|+.+||+||+.+..
T Consensus 48 l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~ 100 (220)
T cd03263 48 LTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYA 100 (220)
T ss_pred HhCCCCCCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHHHHHHHH
Confidence 56788999999999999987655677889999999999999999999987643
No 486
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=97.24 E-value=8.7e-05 Score=72.33 Aligned_cols=52 Identities=29% Similarity=0.303 Sum_probs=45.4
Q ss_pred ccccccCCCceeEEechhhhh---hHHHHHHhhCccCCcccccchhcccccccee
Q psy7411 44 IAGLIIPTSGTAYIDGHDIWY---EMGKVRESLGLCPQYDLLFEELTVEDHLQFF 95 (474)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 95 (474)
|+++++|++|+++++|.++.. +...+|+.+||+||+..+|+.+||.||+.|.
T Consensus 47 l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~ 101 (240)
T PRK09493 47 INKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFG 101 (240)
T ss_pred HhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCcHHHHHHhH
Confidence 667889999999999999864 4467789999999999999999999998764
No 487
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.23 E-value=0.0001 Score=70.33 Aligned_cols=52 Identities=35% Similarity=0.566 Sum_probs=45.6
Q ss_pred ccccccCCCceeEEechhhhhhHHHHHHhhCccCCcccccchhcccccccee
Q psy7411 44 IAGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFF 95 (474)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 95 (474)
|+++++|++|+++++|.++.+.-.+.|+.+||+||+..+|..+||.||+.+.
T Consensus 45 l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~ 96 (211)
T cd03264 45 LATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYI 96 (211)
T ss_pred HhCCCCCCccEEEECCCccccchHHHHhheEEecCCCcccccCCHHHHHHHH
Confidence 6788999999999999987543367789999999999999999999998764
No 488
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=97.22 E-value=6.1e-05 Score=79.15 Aligned_cols=53 Identities=30% Similarity=0.461 Sum_probs=46.3
Q ss_pred ccccccCCCceeEEechhhhhhHHHHHHhhCccCCcccccchhccccccceeee
Q psy7411 44 IAGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAK 97 (474)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 97 (474)
|+++.+|++|++++||.++. ++..-|+.+||+||+..||+.+||.||+.|-..
T Consensus 65 IaGl~~p~~G~I~i~g~~i~-~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~ 117 (377)
T PRK11607 65 LAGFEQPTAGQIMLDGVDLS-HVPPYQRPINMMFQSYALFPHMTVEQNIAFGLK 117 (377)
T ss_pred HhCCCCCCceEEEECCEECC-CCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHH
Confidence 67888999999999999875 355668899999999999999999999988643
No 489
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=97.22 E-value=0.00016 Score=78.75 Aligned_cols=55 Identities=25% Similarity=0.435 Sum_probs=50.5
Q ss_pred CCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecC
Q psy7411 360 TGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIW 414 (474)
Q Consensus 360 ~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~ 414 (474)
+...+++.+++.+..|+.+.++||||+||||+++++.++.+|.+|++.+.+..+.
T Consensus 196 Gq~~~~~al~~aa~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~ 250 (499)
T TIGR00368 196 GQQHAKRALEIAAAGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIW 250 (499)
T ss_pred CcHHHHhhhhhhccCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccc
Confidence 4567899999999999999999999999999999999999999999998877764
No 490
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.22 E-value=8.3e-05 Score=72.63 Aligned_cols=53 Identities=38% Similarity=0.555 Sum_probs=46.2
Q ss_pred ccccccCCCceeEEechhhhh-hHHHHHHhhCccCCcccccchhccccccceee
Q psy7411 44 IAGLIIPTSGTAYIDGHDIWY-EMGKVRESLGLCPQYDLLFEELTVEDHLQFFA 96 (474)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 96 (474)
|+++++|++|++.++|.++.. +..++|+.+||+||+..+|..+||.||+.+..
T Consensus 47 l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~ 100 (242)
T cd03295 47 INRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVP 100 (242)
T ss_pred HhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHHHHHHHHH
Confidence 578889999999999998754 44577889999999999999999999988754
No 491
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.22 E-value=8.7e-05 Score=70.79 Aligned_cols=50 Identities=32% Similarity=0.605 Sum_probs=44.3
Q ss_pred ccccccCCCceeEEechhhhhhHHHHHHhhCccCCcccccchhccccccceee
Q psy7411 44 IAGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFA 96 (474)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 96 (474)
|+++++|++|+++++|.++.. +.|+++||+||+..+|+.+||.||+.+..
T Consensus 46 l~G~~~~~~G~i~~~g~~~~~---~~~~~i~~~~q~~~~~~~~tv~e~l~~~~ 95 (210)
T cd03269 46 ILGIILPDSGEVLFDGKPLDI---AARNRIGYLPEERGLYPKMKVIDQLVYLA 95 (210)
T ss_pred HhCCCCCCceEEEECCCchhH---HHHccEEEeccCCcCCcCCcHHHHHHHHH
Confidence 667889999999999999864 46789999999999999999999988754
No 492
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.22 E-value=0.00029 Score=81.77 Aligned_cols=40 Identities=28% Similarity=0.470 Sum_probs=35.2
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHH
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMS 393 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~ 393 (474)
.+++++++. ..|+++++++++||++++.|+||||||||++
T Consensus 612 ~l~l~~~~~------~~Lk~vsl~Ip~Geiv~VtGvsGSGKSTLl~ 651 (924)
T TIGR00630 612 FLTLKGARE------NNLKNITVSIPLGLFTCITGVSGSGKSTLIN 651 (924)
T ss_pred eEEEEeCcc------CCcCceEEEEeCCCEEEEECCCCCCHHHHHH
Confidence 467777652 3699999999999999999999999999997
No 493
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=97.21 E-value=9e-05 Score=76.77 Aligned_cols=53 Identities=34% Similarity=0.375 Sum_probs=46.2
Q ss_pred ccccccCCCceeEEechhhhh----hHHHHHHhhCccCCcccccchhccccccceee
Q psy7411 44 IAGLIIPTSGTAYIDGHDIWY----EMGKVRESLGLCPQYDLLFEELTVEDHLQFFA 96 (474)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 96 (474)
|+++++|++|+++++|.++.. +..+.|+++||+||++.+|.++||.||+.+.+
T Consensus 51 L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~ 107 (343)
T PRK11153 51 INLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPL 107 (343)
T ss_pred HhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHH
Confidence 678899999999999999863 34567899999999999999999999998764
No 494
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.21 E-value=8.2e-05 Score=77.42 Aligned_cols=53 Identities=36% Similarity=0.523 Sum_probs=48.1
Q ss_pred ccccccCCCceeEEechhhhhhHHHHHHhhCccCCcccccchhccccccceeee
Q psy7411 44 IAGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAK 97 (474)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 97 (474)
|||+..||+|+++++|.||.. +--=||.+|||+|.--||+.|||.||+.|=.+
T Consensus 51 IAGfe~p~~G~I~l~G~~i~~-lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk 103 (352)
T COG3842 51 IAGFEQPSSGEILLDGEDITD-VPPEKRPIGMVFQSYALFPHMTVEENVAFGLK 103 (352)
T ss_pred HhCCCCCCCceEEECCEECCC-CChhhcccceeecCcccCCCCcHHHHhhhhhh
Confidence 567889999999999999987 66668999999999999999999999988776
No 495
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.19 E-value=0.0001 Score=70.36 Aligned_cols=53 Identities=26% Similarity=0.342 Sum_probs=45.8
Q ss_pred ccccccCCCceeEEechhhhh----hHHHHHHhhCccCCcccccchhccccccceee
Q psy7411 44 IAGLIIPTSGTAYIDGHDIWY----EMGKVRESLGLCPQYDLLFEELTVEDHLQFFA 96 (474)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 96 (474)
|+++++|++|+++++|.++.. +..+.|+.++|+||+..+|+.+||.||+.+..
T Consensus 47 l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~ 103 (214)
T cd03292 47 IYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFAL 103 (214)
T ss_pred HhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHH
Confidence 677889999999999998753 34568899999999999999999999987754
No 496
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.18 E-value=9.7e-05 Score=70.40 Aligned_cols=53 Identities=25% Similarity=0.353 Sum_probs=47.2
Q ss_pred ccccccCCCceeEEechhhhhhHHHHHHhhCccCCcccccchhccccccceee
Q psy7411 44 IAGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFA 96 (474)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 96 (474)
|+++++|++|+++++|.++.....+.|+++||+||++.+++++||.||+.+.+
T Consensus 47 l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~ 99 (204)
T PRK13538 47 LAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTALENLRFYQ 99 (204)
T ss_pred HhCCCCCCCcEEEECCEEcccchHHhhhheEEeCCccccCcCCcHHHHHHHHH
Confidence 67888999999999999987655678899999999999999999999998764
No 497
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=97.18 E-value=0.00015 Score=70.58 Aligned_cols=52 Identities=33% Similarity=0.465 Sum_probs=44.6
Q ss_pred cccccccCCCceeEEechhhhh----hHHHHHHhhCccCCcccccchhccccccce
Q psy7411 43 DIAGLIIPTSGTAYIDGHDIWY----EMGKVRESLGLCPQYDLLFEELTVEDHLQF 94 (474)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 94 (474)
=|+++++|++|+++++|.++.. +....|+.+||+||+..+|+.+||.||+.+
T Consensus 47 ~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~ 102 (243)
T TIGR02315 47 CINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLH 102 (243)
T ss_pred HHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccccccHHHHHhh
Confidence 3678889999999999998753 234578999999999999999999999865
No 498
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.17 E-value=0.00012 Score=71.06 Aligned_cols=51 Identities=35% Similarity=0.503 Sum_probs=44.5
Q ss_pred ccccccCCCceeEEechhhhhh----HHHHHHhhCccCCcccccchhccccccce
Q psy7411 44 IAGLIIPTSGTAYIDGHDIWYE----MGKVRESLGLCPQYDLLFEELTVEDHLQF 94 (474)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 94 (474)
|+++++|++|+++++|.++... ..+.|+.+||+||+..+|+.+||.||+.+
T Consensus 47 l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~ 101 (241)
T cd03256 47 LNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLS 101 (241)
T ss_pred HhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccccCcHHHHHHh
Confidence 6788899999999999987532 45678999999999999999999999865
No 499
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=97.17 E-value=7.6e-05 Score=77.71 Aligned_cols=53 Identities=26% Similarity=0.424 Sum_probs=46.2
Q ss_pred ccccccCCCceeEEechhhhhhHHHHHHhhCccCCcccccchhccccccceeee
Q psy7411 44 IAGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAK 97 (474)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 97 (474)
|+++.+|++|++++||.++.. ...-|+++||+||+..||+.+||.||+.|-..
T Consensus 52 IaGl~~p~~G~I~~~g~~i~~-~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~ 104 (351)
T PRK11432 52 VAGLEKPTEGQIFIDGEDVTH-RSIQQRDICMVFQSYALFPHMSLGENVGYGLK 104 (351)
T ss_pred HHCCCCCCceEEEECCEECCC-CCHHHCCEEEEeCCcccCCCCCHHHHHHHHHh
Confidence 578899999999999999854 44457899999999999999999999998654
No 500
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=97.16 E-value=7.6e-05 Score=77.82 Aligned_cols=53 Identities=23% Similarity=0.349 Sum_probs=45.3
Q ss_pred ccccccCCCceeEEechhhhhhHHHHHHhhCccCCcccccchhccccccceeee
Q psy7411 44 IAGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAK 97 (474)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 97 (474)
|+++.+|++|++++||.++.+ ...-|+.+||+||+..||+.+||.||+.|-..
T Consensus 50 iaGl~~p~~G~I~~~g~~i~~-~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~ 102 (356)
T PRK11650 50 VAGLERITSGEIWIGGRVVNE-LEPADRDIAMVFQNYALYPHMSVRENMAYGLK 102 (356)
T ss_pred HHCCCCCCceEEEECCEECCC-CCHHHCCEEEEeCCccccCCCCHHHHHHhHHh
Confidence 578889999999999999854 33346899999999999999999999988643
Done!