Query psy7411
Match_columns 474
No_of_seqs 394 out of 3322
Neff 5.9
Searched_HMMs 29240
Date Fri Aug 16 17:38:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7411.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7411hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vpl_A ABC transporter, ATP-bi 99.9 3.3E-23 1.1E-27 203.6 16.8 120 347-467 14-133 (256)
2 2olj_A Amino acid ABC transpor 99.9 6E-23 2.1E-27 202.6 17.6 120 348-468 24-147 (263)
3 3fvq_A Fe(3+) IONS import ATP- 99.9 1.8E-23 6E-28 215.1 14.1 120 348-468 4-126 (359)
4 3rlf_A Maltose/maltodextrin im 99.9 3.1E-23 1.1E-27 214.7 16.0 119 348-468 3-121 (381)
5 3tui_C Methionine import ATP-b 99.9 5.3E-23 1.8E-27 211.9 17.2 123 346-468 22-151 (366)
6 2pcj_A ABC transporter, lipopr 99.9 9.9E-23 3.4E-27 196.0 16.9 120 348-468 4-128 (224)
7 1b0u_A Histidine permease; ABC 99.9 1E-22 3.4E-27 200.5 17.1 120 348-468 6-140 (262)
8 3gfo_A Cobalt import ATP-bindi 99.9 1.1E-22 3.8E-27 202.0 16.0 122 347-468 6-131 (275)
9 1z47_A CYSA, putative ABC-tran 99.9 9.9E-23 3.4E-27 209.3 15.0 122 346-468 12-133 (355)
10 2it1_A 362AA long hypothetical 99.9 1.7E-22 5.8E-27 208.0 16.5 119 348-468 3-121 (362)
11 1g29_1 MALK, maltose transport 99.9 1.7E-22 5.7E-27 208.8 16.4 120 348-468 3-127 (372)
12 2yyz_A Sugar ABC transporter, 99.9 9.9E-23 3.4E-27 209.5 14.5 119 348-468 3-121 (359)
13 3tif_A Uncharacterized ABC tra 99.9 2.8E-22 9.6E-27 194.2 16.3 120 349-468 2-132 (235)
14 1v43_A Sugar-binding transport 99.9 1.8E-22 6E-27 208.6 14.6 119 348-468 11-129 (372)
15 1oxx_K GLCV, glucose, ABC tran 99.9 1E-22 3.6E-27 208.9 12.7 120 348-468 3-128 (353)
16 1ji0_A ABC transporter; ATP bi 99.9 4.1E-22 1.4E-26 193.6 15.9 119 347-467 5-125 (240)
17 1g6h_A High-affinity branched- 99.9 3E-22 1E-26 196.4 14.5 120 348-468 7-141 (257)
18 1sgw_A Putative ABC transporte 99.9 7.1E-22 2.4E-26 189.4 14.3 99 347-451 9-107 (214)
19 3d31_A Sulfate/molybdate ABC t 99.9 5.7E-22 1.9E-26 203.1 12.9 113 349-467 2-114 (348)
20 4g1u_C Hemin import ATP-bindin 99.9 1.3E-21 4.6E-26 193.1 15.1 118 347-467 10-128 (266)
21 2yz2_A Putative ABC transporte 99.9 3.5E-21 1.2E-25 189.8 13.9 100 348-449 2-106 (266)
22 2ff7_A Alpha-hemolysin translo 99.8 7.1E-21 2.4E-25 185.8 14.9 112 347-461 6-119 (247)
23 2ihy_A ABC transporter, ATP-bi 99.8 5.2E-21 1.8E-25 190.2 12.6 120 347-467 20-148 (279)
24 2onk_A Molybdate/tungstate ABC 99.8 5.9E-21 2E-25 185.8 11.2 112 349-467 2-113 (240)
25 3nh6_A ATP-binding cassette SU 99.8 1.4E-20 4.9E-25 189.6 13.0 113 347-462 52-165 (306)
26 2d2e_A SUFC protein; ABC-ATPas 99.8 2.8E-20 9.5E-25 181.7 14.5 120 348-468 3-129 (250)
27 1mv5_A LMRA, multidrug resista 99.8 6.2E-21 2.1E-25 185.4 9.4 112 349-462 2-114 (243)
28 2zu0_C Probable ATP-dependent 99.8 6.4E-20 2.2E-24 181.0 15.4 121 347-468 19-150 (267)
29 2ixe_A Antigen peptide transpo 99.8 3.5E-20 1.2E-24 183.3 12.1 99 348-447 16-117 (271)
30 2pjz_A Hypothetical protein ST 99.8 9.5E-20 3.3E-24 179.7 12.6 108 349-462 2-113 (263)
31 2nq2_C Hypothetical ABC transp 99.8 2.1E-19 7.2E-24 176.1 14.5 88 348-447 4-91 (253)
32 2ghi_A Transport protein; mult 99.8 2.1E-19 7.2E-24 176.6 13.4 98 347-446 16-116 (260)
33 2qi9_C Vitamin B12 import ATP- 99.8 2E-19 6.9E-24 176.0 12.4 93 348-446 4-97 (249)
34 3gd7_A Fusion complex of cysti 99.8 1.8E-19 6.3E-24 187.1 10.5 111 347-462 18-130 (390)
35 2yl4_A ATP-binding cassette SU 99.8 7.5E-19 2.6E-23 191.0 15.0 113 349-462 342-458 (595)
36 3b60_A Lipid A export ATP-bind 99.8 5.5E-19 1.9E-23 191.6 13.5 114 347-462 340-455 (582)
37 3b5x_A Lipid A export ATP-bind 99.8 4.6E-19 1.6E-23 192.2 12.2 114 347-462 340-455 (582)
38 4a82_A Cystic fibrosis transme 99.8 9.5E-19 3.3E-23 189.7 13.3 113 347-462 338-452 (578)
39 2pze_A Cystic fibrosis transme 99.8 8.3E-19 2.9E-23 169.1 11.4 86 348-446 6-92 (229)
40 3qf4_B Uncharacterized ABC tra 99.8 6.4E-19 2.2E-23 191.8 9.9 112 347-461 353-465 (598)
41 2cbz_A Multidrug resistance-as 99.8 8.2E-19 2.8E-23 170.1 9.3 87 348-447 3-90 (237)
42 3qf4_A ABC transporter, ATP-bi 99.8 1.9E-18 6.6E-23 187.7 11.2 112 347-461 340-453 (587)
43 4f4c_A Multidrug resistance pr 99.7 8.7E-18 3E-22 197.5 13.0 115 348-463 1076-1193(1321)
44 3g5u_A MCG1178, multidrug resi 99.7 6.8E-17 2.3E-21 189.5 14.3 113 347-462 386-501 (1284)
45 4f4c_A Multidrug resistance pr 99.7 1.5E-16 5.2E-21 187.1 13.6 114 347-463 414-530 (1321)
46 3g5u_A MCG1178, multidrug resi 99.7 7.2E-17 2.4E-21 189.3 9.6 116 347-463 1029-1147(1284)
47 2bbs_A Cystic fibrosis transme 99.7 9.3E-17 3.2E-21 160.5 7.8 82 347-444 39-120 (290)
48 1htw_A HI0065; nucleotide-bind 99.5 4.4E-17 1.5E-21 149.0 -10.5 88 352-446 11-98 (158)
49 3bk7_A ABC transporter ATP-bin 99.5 6.3E-14 2.2E-18 153.0 8.7 86 347-446 356-441 (607)
50 1yqt_A RNAse L inhibitor; ATP- 99.4 8.5E-14 2.9E-18 149.9 7.6 86 347-446 286-371 (538)
51 3ozx_A RNAse L inhibitor; ATP 99.4 8.2E-13 2.8E-17 142.4 10.5 87 347-446 268-354 (538)
52 2iw3_A Elongation factor 3A; a 99.4 4.8E-13 1.6E-17 152.4 8.8 90 347-446 670-764 (986)
53 2dpy_A FLII, flagellum-specifi 99.3 6.2E-14 2.1E-18 147.6 -3.3 101 347-448 130-240 (438)
54 3bk7_A ABC transporter ATP-bin 99.3 4.8E-13 1.6E-17 146.1 3.0 93 352-445 95-202 (607)
55 1yqt_A RNAse L inhibitor; ATP- 99.3 9.3E-13 3.2E-17 141.8 2.0 95 350-445 22-132 (538)
56 2iw3_A Elongation factor 3A; a 99.2 1.8E-11 6E-16 139.6 11.1 84 348-445 435-519 (986)
57 3b9q_A Chloroplast SRP recepto 99.2 9.7E-13 3.3E-17 132.0 0.7 84 363-446 88-179 (302)
58 3b85_A Phosphate starvation-in 99.2 9.9E-14 3.4E-18 132.1 -6.6 67 357-431 9-75 (208)
59 1z6g_A Guanylate kinase; struc 99.2 4.1E-14 1.4E-18 134.7 -10.0 71 363-437 11-83 (218)
60 3j16_B RLI1P; ribosome recycli 99.2 1.7E-11 5.8E-16 133.9 7.5 82 352-445 350-436 (608)
61 2jeo_A Uridine-cytidine kinase 99.2 5.1E-12 1.7E-16 121.7 2.7 78 360-451 10-87 (245)
62 1znw_A Guanylate kinase, GMP k 99.2 3E-13 1E-17 126.9 -6.0 98 362-464 9-112 (207)
63 2og2_A Putative signal recogni 99.1 5.1E-12 1.7E-16 129.9 1.1 82 366-447 148-237 (359)
64 3aez_A Pantothenate kinase; tr 99.1 2.5E-13 8.5E-18 136.9 -8.7 98 348-466 43-163 (312)
65 3sop_A Neuronal-specific septi 99.1 1.1E-12 3.6E-17 129.6 -4.4 73 377-451 4-76 (270)
66 1sq5_A Pantothenate kinase; P- 99.1 5.9E-13 2E-17 133.2 -7.1 97 348-451 37-157 (308)
67 3ux8_A Excinuclease ABC, A sub 99.1 1.9E-11 6.6E-16 134.4 3.7 85 361-448 30-161 (670)
68 2gza_A Type IV secretion syste 99.1 2.2E-11 7.4E-16 124.8 3.5 84 365-449 165-251 (361)
69 2yhs_A FTSY, cell division pro 99.1 1.1E-11 3.8E-16 132.0 1.0 83 365-447 283-372 (503)
70 1u0l_A Probable GTPase ENGC; p 99.1 9.7E-12 3.3E-16 124.1 -0.4 75 371-446 165-259 (301)
71 1s96_A Guanylate kinase, GMP k 99.1 8.1E-13 2.8E-17 126.6 -8.6 89 370-461 11-105 (219)
72 2obl_A ESCN; ATPase, hydrolase 99.1 2E-11 6.7E-16 124.8 0.9 84 347-431 44-135 (347)
73 2npi_A Protein CLP1; CLP1-PCF1 99.0 7E-12 2.4E-16 132.7 -4.3 84 347-446 117-205 (460)
74 1tf7_A KAIC; homohexamer, hexa 99.0 8.7E-12 3E-16 133.4 -4.2 81 350-431 14-97 (525)
75 2qm8_A GTPase/ATPase; G protei 99.0 1.2E-12 4.2E-17 132.9 -10.8 88 348-436 29-121 (337)
76 1rj9_A FTSY, signal recognitio 99.0 7.5E-11 2.6E-15 118.4 2.2 73 374-446 101-180 (304)
77 2yv5_A YJEQ protein; hydrolase 99.0 6.7E-11 2.3E-15 118.2 1.3 71 371-443 161-240 (302)
78 3szr_A Interferon-induced GTP- 99.0 1.2E-11 4.2E-16 134.9 -5.0 96 348-446 10-121 (608)
79 1tq4_A IIGP1, interferon-induc 99.0 1.1E-11 3.7E-16 129.7 -5.9 75 362-445 36-130 (413)
80 2v9p_A Replication protein E1; 99.0 2.3E-12 8E-17 129.6 -10.7 57 348-409 101-157 (305)
81 3euj_A Chromosome partition pr 99.0 1.3E-10 4.3E-15 123.7 2.0 61 350-414 8-68 (483)
82 3e70_C DPA, signal recognition 98.9 1.4E-10 4.8E-15 117.7 1.0 77 371-447 125-208 (328)
83 3tr0_A Guanylate kinase, GMP k 98.9 9.3E-12 3.2E-16 115.0 -7.3 73 369-445 1-74 (205)
84 2ehv_A Hypothetical protein PH 98.9 1E-10 3.4E-15 110.8 -2.0 71 371-441 26-98 (251)
85 2qnr_A Septin-2, protein NEDD5 98.9 1.1E-10 3.8E-15 116.6 -1.9 85 352-446 2-87 (301)
86 2qag_B Septin-6, protein NEDD5 98.9 2.2E-11 7.4E-16 127.8 -7.3 87 349-446 17-106 (427)
87 4aby_A DNA repair protein RECN 98.9 1.4E-09 4.7E-14 111.8 5.6 84 363-448 49-172 (415)
88 1t9h_A YLOQ, probable GTPase E 98.9 3.3E-10 1.1E-14 114.1 0.6 74 370-444 168-248 (307)
89 2pt7_A CAG-ALFA; ATPase, prote 98.8 3.4E-10 1.2E-14 114.6 0.6 79 363-447 159-237 (330)
90 2rcn_A Probable GTPase ENGC; Y 98.8 6.3E-10 2.1E-14 114.3 2.1 94 365-467 206-301 (358)
91 3j16_B RLI1P; ribosome recycli 98.8 9E-10 3.1E-14 120.3 3.1 53 353-406 82-134 (608)
92 1zp6_A Hypothetical protein AT 98.8 2.8E-10 9.6E-15 104.0 -1.6 72 371-447 5-76 (191)
93 4a74_A DNA repair and recombin 98.8 2.1E-10 7.1E-15 107.3 -3.4 71 371-447 21-98 (231)
94 3ozx_A RNAse L inhibitor; ATP 98.8 2.7E-09 9.4E-14 114.9 3.9 60 353-414 4-75 (538)
95 2qag_C Septin-7; cell cycle, c 98.7 3.7E-10 1.3E-14 118.2 -3.9 91 348-448 11-101 (418)
96 1p9r_A General secretion pathw 98.7 2.2E-10 7.6E-15 119.8 -5.9 96 349-447 144-259 (418)
97 1qhl_A Protein (cell division 98.7 2.3E-10 7.7E-15 110.5 -5.8 74 348-430 9-91 (227)
98 3ux8_A Excinuclease ABC, A sub 98.7 4.6E-09 1.6E-13 115.5 3.7 52 362-414 335-408 (670)
99 2i3b_A HCR-ntpase, human cance 98.7 1.2E-09 4.2E-14 102.2 -1.5 53 375-430 1-53 (189)
100 4eun_A Thermoresistant glucoki 98.7 8.6E-10 2.9E-14 102.6 -3.1 80 364-447 18-97 (200)
101 2eyu_A Twitching motility prot 98.6 1.7E-09 6E-14 106.0 -2.1 62 363-429 15-77 (261)
102 2oap_1 GSPE-2, type II secreti 98.6 9.9E-09 3.4E-13 109.9 3.4 51 362-412 247-297 (511)
103 3asz_A Uridine kinase; cytidin 98.6 1.4E-08 4.7E-13 94.5 3.5 54 372-446 3-58 (211)
104 4gp7_A Metallophosphoesterase; 98.6 1.1E-08 3.9E-13 93.1 2.5 44 367-410 1-56 (171)
105 3lnc_A Guanylate kinase, GMP k 98.6 1.3E-08 4.5E-13 96.5 2.0 37 363-399 15-52 (231)
106 1pui_A ENGB, probable GTP-bind 98.5 8.3E-09 2.8E-13 95.1 -0.2 56 349-408 4-64 (210)
107 2vf7_A UVRA2, excinuclease ABC 98.5 4.9E-08 1.7E-12 110.1 5.6 47 347-399 501-548 (842)
108 2bdt_A BH3686; alpha-beta prot 98.5 7.9E-09 2.7E-13 94.6 -2.1 65 375-447 2-66 (189)
109 1in4_A RUVB, holliday junction 98.4 5.7E-10 2E-14 112.4 -11.7 94 350-446 20-125 (334)
110 2r6f_A Excinuclease ABC subuni 98.4 7.2E-08 2.5E-12 109.7 3.5 44 347-396 628-671 (972)
111 2ewv_A Twitching motility prot 98.4 9.3E-09 3.2E-13 105.8 -3.8 61 364-429 127-188 (372)
112 2j41_A Guanylate kinase; GMP, 98.4 3.3E-09 1.1E-13 97.7 -6.7 35 370-404 1-35 (207)
113 2bbw_A Adenylate kinase 4, AK4 98.4 8.4E-09 2.9E-13 98.9 -4.4 70 374-446 26-98 (246)
114 2o8b_B DNA mismatch repair pro 98.4 8E-08 2.7E-12 110.6 2.2 54 347-401 749-814 (1022)
115 1lw7_A Transcriptional regulat 98.3 7.2E-09 2.5E-13 105.6 -6.6 66 365-431 158-233 (365)
116 1cr0_A DNA primase/helicase; R 98.3 1.7E-08 5.9E-13 99.2 -4.0 49 362-410 22-71 (296)
117 1ye8_A Protein THEP1, hypothet 98.3 6.7E-08 2.3E-12 89.3 0.0 50 377-431 2-52 (178)
118 2ygr_A Uvrabc system protein A 98.3 1.7E-07 5.7E-12 107.0 3.0 44 347-396 646-689 (993)
119 2x8a_A Nuclear valosin-contain 98.3 4.8E-09 1.6E-13 103.3 -8.5 80 361-444 32-113 (274)
120 2f1r_A Molybdopterin-guanine d 98.3 3.8E-08 1.3E-12 90.7 -2.4 59 376-434 3-73 (171)
121 3c8u_A Fructokinase; YP_612366 98.3 1.6E-07 5.5E-12 87.8 1.8 43 372-414 19-64 (208)
122 1zu4_A FTSY; GTPase, signal re 98.3 1.2E-07 4.2E-12 95.6 1.1 82 365-446 95-187 (320)
123 1nij_A Hypothetical protein YJ 98.3 1.7E-08 5.7E-13 101.4 -5.6 69 376-444 5-100 (318)
124 1n0w_A DNA repair protein RAD5 98.3 7.4E-08 2.5E-12 90.7 -1.0 59 371-429 20-87 (243)
125 1pzn_A RAD51, DNA repair and r 98.3 2E-08 6.8E-13 102.4 -5.5 79 362-446 117-203 (349)
126 1ewq_A DNA mismatch repair pro 98.3 5.2E-08 1.8E-12 109.0 -2.6 82 348-445 550-634 (765)
127 4e22_A Cytidylate kinase; P-lo 98.2 9.6E-08 3.3E-12 92.5 -0.8 59 373-431 25-96 (252)
128 1e69_A Chromosome segregation 98.2 2.9E-07 9.8E-12 92.3 2.6 68 366-434 16-134 (322)
129 1lvg_A Guanylate kinase, GMP k 98.2 1.4E-07 4.8E-12 88.0 0.1 39 373-413 2-53 (198)
130 3a00_A Guanylate kinase, GMP k 98.2 1.7E-07 5.7E-12 86.2 0.4 26 375-400 1-26 (186)
131 1iy2_A ATP-dependent metallopr 98.2 3.5E-09 1.2E-13 103.3 -12.2 93 350-447 51-145 (278)
132 1ixz_A ATP-dependent metallopr 98.2 4.1E-09 1.4E-13 101.2 -11.7 94 350-448 27-122 (254)
133 3kta_A Chromosome segregation 98.2 7.3E-07 2.5E-11 80.8 3.3 42 363-405 13-56 (182)
134 3nwj_A ATSK2; P loop, shikimat 98.2 1E-07 3.5E-12 93.0 -2.8 52 348-399 17-72 (250)
135 3pih_A Uvrabc system protein A 98.1 1.2E-06 4.1E-11 99.7 5.2 31 362-392 597-627 (916)
136 3uie_A Adenylyl-sulfate kinase 98.1 5.8E-08 2E-12 90.1 -4.8 61 352-414 3-65 (200)
137 2w0m_A SSO2452; RECA, SSPF, un 98.1 1E-07 3.4E-12 88.6 -3.3 53 361-413 8-61 (235)
138 3jvv_A Twitching mobility prot 98.1 3.3E-07 1.1E-11 93.9 0.1 81 362-445 103-191 (356)
139 1ni3_A YCHF GTPase, YCHF GTP-b 98.1 4.1E-07 1.4E-11 94.4 0.8 73 371-443 16-105 (392)
140 1knq_A Gluconate kinase; ALFA/ 98.0 2.6E-07 9E-12 83.2 -3.4 67 373-444 6-73 (175)
141 3cr8_A Sulfate adenylyltranfer 97.9 1.1E-07 3.8E-12 102.7 -8.1 43 371-413 365-409 (552)
142 3lda_A DNA repair protein RAD5 97.9 7.9E-07 2.7E-11 92.5 -1.5 59 371-429 174-241 (400)
143 3thx_A DNA mismatch repair pro 97.9 6.4E-06 2.2E-10 94.0 4.2 44 361-404 648-699 (934)
144 3ney_A 55 kDa erythrocyte memb 97.9 7.2E-07 2.5E-11 84.2 -3.1 31 370-400 14-44 (197)
145 1udx_A The GTP-binding protein 97.8 7.8E-06 2.7E-10 85.4 4.0 46 365-410 147-203 (416)
146 1kgd_A CASK, peripheral plasma 97.8 4E-06 1.4E-10 76.5 1.5 35 373-407 3-38 (180)
147 1wb9_A DNA mismatch repair pro 97.8 6.7E-06 2.3E-10 92.5 3.0 71 361-445 594-665 (800)
148 3thx_B DNA mismatch repair pro 97.8 4.3E-06 1.5E-10 95.2 1.1 37 361-397 659-695 (918)
149 2o5v_A DNA replication and rep 97.8 9.7E-06 3.3E-10 83.1 3.7 44 350-397 5-48 (359)
150 3vaa_A Shikimate kinase, SK; s 97.8 8.8E-06 3E-10 75.2 3.0 40 360-399 10-49 (199)
151 2vp4_A Deoxynucleoside kinase; 97.8 6.2E-06 2.1E-10 78.3 1.9 40 370-413 15-54 (230)
152 1vpl_A ABC transporter, ATP-bi 97.8 3.1E-06 1.1E-10 82.7 -0.3 53 44-96 61-113 (256)
153 2kjq_A DNAA-related protein; s 97.8 4.9E-06 1.7E-10 74.5 0.9 41 374-415 35-77 (149)
154 1svm_A Large T antigen; AAA+ f 97.8 1.6E-06 5.4E-11 89.6 -2.8 64 362-432 156-219 (377)
155 1w1w_A Structural maintenance 97.7 8.6E-06 2.9E-10 84.6 2.5 50 348-404 6-55 (430)
156 1rz3_A Hypothetical protein rb 97.7 3.9E-06 1.3E-10 78.0 -0.3 43 371-413 18-60 (201)
157 3ec2_A DNA replication protein 97.7 2.7E-06 9.3E-11 77.1 -1.5 35 370-404 33-67 (180)
158 1oix_A RAS-related protein RAB 97.7 1.6E-05 5.3E-10 72.7 3.6 37 377-413 31-78 (191)
159 1b0u_A Histidine permease; ABC 97.7 6.3E-06 2.1E-10 80.6 0.6 52 44-95 52-117 (262)
160 2olj_A Amino acid ABC transpor 97.7 5.9E-06 2E-10 81.1 0.3 52 44-95 70-124 (263)
161 3tui_C Methionine import ATP-b 97.7 6.4E-06 2.2E-10 84.7 0.1 54 44-97 74-131 (366)
162 1vma_A Cell division protein F 97.7 6.7E-06 2.3E-10 82.5 0.2 49 367-415 96-144 (306)
163 3tau_A Guanylate kinase, GMP k 97.6 1.8E-05 6.2E-10 73.9 2.9 29 373-401 6-34 (208)
164 4ad8_A DNA repair protein RECN 97.6 1.6E-05 5.4E-10 84.8 2.6 86 362-449 48-173 (517)
165 1ls1_A Signal recognition part 97.6 8.9E-06 3E-10 80.9 0.3 61 350-415 78-138 (295)
166 2onk_A Molybdate/tungstate ABC 97.6 5.8E-06 2E-10 79.9 -1.1 52 44-96 44-95 (240)
167 2px0_A Flagellar biosynthesis 97.6 3.3E-05 1.1E-09 76.9 4.1 42 373-414 103-145 (296)
168 3tqc_A Pantothenate kinase; bi 97.6 2.9E-06 1E-10 85.7 -3.6 56 354-410 66-129 (321)
169 1cke_A CK, MSSA, protein (cyti 97.6 3.4E-06 1.2E-10 78.8 -3.1 56 375-430 5-73 (227)
170 1sxj_E Activator 1 40 kDa subu 97.6 1.4E-05 4.8E-10 79.6 0.9 55 378-433 39-94 (354)
171 1sgw_A Putative ABC transporte 97.6 1.1E-05 3.9E-10 76.6 0.1 49 44-96 55-103 (214)
172 1g6h_A High-affinity branched- 97.5 1.7E-05 5.8E-10 77.2 1.3 53 44-96 53-107 (257)
173 2pcj_A ABC transporter, lipopr 97.5 1.3E-05 4.6E-10 76.4 0.4 53 44-96 50-107 (224)
174 3k1j_A LON protease, ATP-depen 97.5 1.4E-05 4.7E-10 86.9 0.1 73 353-430 39-112 (604)
175 3d31_A Sulfate/molybdate ABC t 97.5 1.1E-05 3.8E-10 82.4 -0.6 52 44-96 46-97 (348)
176 1ji0_A ABC transporter; ATP bi 97.5 1.6E-05 5.5E-10 76.6 0.6 52 44-95 52-105 (240)
177 3qf7_A RAD50; ABC-ATPase, ATPa 97.5 6.4E-05 2.2E-09 76.8 5.0 33 363-396 12-44 (365)
178 3fvq_A Fe(3+) IONS import ATP- 97.5 7.5E-06 2.6E-10 84.0 -2.0 54 44-97 50-106 (359)
179 2f9l_A RAB11B, member RAS onco 97.5 4.1E-05 1.4E-09 70.0 3.1 37 377-413 7-54 (199)
180 2ff7_A Alpha-hemolysin translo 97.5 2.3E-05 7.7E-10 76.0 0.8 51 44-95 55-106 (247)
181 3tif_A Uncharacterized ABC tra 97.5 2.4E-05 8.1E-10 75.2 0.9 52 44-95 51-107 (235)
182 2p67_A LAO/AO transport system 97.5 7.6E-06 2.6E-10 82.7 -2.7 65 349-414 31-95 (341)
183 2dr3_A UPF0273 protein PH0284; 97.4 2.5E-05 8.7E-10 73.2 0.7 51 363-413 10-62 (247)
184 2ixe_A Antigen peptide transpo 97.4 2.9E-05 1E-09 76.3 1.1 52 44-96 65-117 (271)
185 1oxx_K GLCV, glucose, ABC tran 97.4 1.1E-05 3.6E-10 82.6 -2.3 54 44-97 51-108 (353)
186 2qt1_A Nicotinamide riboside k 97.4 6.8E-05 2.3E-09 69.3 3.2 30 371-400 17-46 (207)
187 2yyz_A Sugar ABC transporter, 97.4 1.8E-05 6.3E-10 81.1 -1.0 53 44-97 49-101 (359)
188 3nh6_A ATP-binding cassette SU 97.4 2.7E-05 9.4E-10 78.1 0.2 52 44-96 100-152 (306)
189 1odf_A YGR205W, hypothetical 3 97.4 4.9E-05 1.7E-09 75.5 2.0 58 373-446 29-86 (290)
190 1z47_A CYSA, putative ABC-tran 97.4 1.6E-05 5.5E-10 81.4 -1.7 52 44-96 61-112 (355)
191 3m6a_A ATP-dependent protease 97.4 2.3E-05 7.8E-10 84.3 -0.6 59 352-412 87-145 (543)
192 2cvh_A DNA repair and recombin 97.4 5.7E-05 2E-09 69.6 2.2 48 363-412 7-55 (220)
193 2qi9_C Vitamin B12 import ATP- 97.3 4E-05 1.4E-09 74.5 0.9 51 44-95 46-97 (249)
194 1mv5_A LMRA, multidrug resista 97.3 2.2E-05 7.4E-10 75.7 -1.3 51 44-95 48-99 (243)
195 2it1_A 362AA long hypothetical 97.3 2.3E-05 7.9E-10 80.4 -1.2 52 44-96 49-100 (362)
196 3rlf_A Maltose/maltodextrin im 97.3 2.2E-05 7.4E-10 81.2 -1.5 53 44-97 49-101 (381)
197 1g29_1 MALK, maltose transport 97.3 1.9E-05 6.4E-10 81.4 -1.9 53 44-96 49-106 (372)
198 3gfo_A Cobalt import ATP-bindi 97.3 4.3E-05 1.5E-09 75.4 0.7 53 44-97 54-111 (275)
199 1v43_A Sugar-binding transport 97.3 2.1E-05 7.1E-10 81.0 -1.7 53 44-97 57-109 (372)
200 2yz2_A Putative ABC transporte 97.3 3.9E-05 1.3E-09 75.1 0.2 51 44-96 53-104 (266)
201 1kag_A SKI, shikimate kinase I 97.3 7.6E-05 2.6E-09 66.5 1.9 28 374-401 3-30 (173)
202 2www_A Methylmalonic aciduria 97.3 4.9E-05 1.7E-09 77.2 0.5 42 373-414 72-113 (349)
203 3hr8_A Protein RECA; alpha and 97.3 5.2E-05 1.8E-09 77.7 0.7 74 371-446 57-131 (356)
204 4a82_A Cystic fibrosis transme 97.3 6.4E-05 2.2E-09 81.3 1.4 51 44-95 387-438 (578)
205 1tf7_A KAIC; homohexamer, hexa 97.2 5E-05 1.7E-09 81.0 0.4 59 349-412 258-319 (525)
206 4g1u_C Hemin import ATP-bindin 97.2 7.1E-05 2.4E-09 73.4 1.1 53 44-96 57-110 (266)
207 1mky_A Probable GTP-binding pr 97.2 0.00021 7.2E-09 74.4 4.5 37 377-413 182-230 (439)
208 3qf4_A ABC transporter, ATP-bi 97.2 9.5E-05 3.3E-09 80.1 1.5 52 44-96 389-441 (587)
209 3b60_A Lipid A export ATP-bind 97.2 7.5E-05 2.6E-09 80.7 0.6 51 44-95 389-440 (582)
210 3b5x_A Lipid A export ATP-bind 97.1 9E-05 3.1E-09 80.1 1.0 51 44-95 389-440 (582)
211 2yl4_A ATP-binding cassette SU 97.1 7.8E-05 2.7E-09 80.8 0.4 52 44-96 390-442 (595)
212 2pez_A Bifunctional 3'-phospho 97.1 7E-05 2.4E-09 67.6 -0.2 40 373-413 3-44 (179)
213 1f2t_A RAD50 ABC-ATPase; DNA d 97.1 0.00031 1E-08 62.6 3.7 28 368-396 17-44 (149)
214 2dhr_A FTSH; AAA+ protein, hex 97.1 3E-05 1E-09 82.8 -3.4 90 351-445 43-134 (499)
215 3qf4_B Uncharacterized ABC tra 97.1 0.00012 4.2E-09 79.4 1.2 51 44-95 401-452 (598)
216 1nlf_A Regulatory protein REPA 97.0 0.0002 6.7E-09 69.7 2.2 30 371-400 26-55 (279)
217 2ffh_A Protein (FFH); SRP54, s 96.9 0.00017 5.9E-09 75.5 1.0 59 352-415 80-138 (425)
218 1f6b_A SAR1; gtpases, N-termin 96.9 0.00016 5.6E-09 66.2 0.6 56 357-413 8-71 (198)
219 2ghi_A Transport protein; mult 96.9 0.00016 5.6E-09 70.4 0.4 50 44-95 66-116 (260)
220 1j8m_F SRP54, signal recogniti 96.9 0.00013 4.6E-09 72.6 -0.5 61 351-415 77-138 (297)
221 1m7g_A Adenylylsulfate kinase; 96.8 0.00012 4E-09 68.2 -1.2 44 370-413 20-65 (211)
222 2ihy_A ABC transporter, ATP-bi 96.8 0.00013 4.5E-09 72.0 -0.9 52 44-95 67-123 (279)
223 1m2o_B GTP-binding protein SAR 96.8 0.00064 2.2E-08 61.7 3.7 50 363-413 12-69 (190)
224 3ice_A Transcription terminati 96.8 0.00013 4.5E-09 75.7 -1.2 52 348-399 133-198 (422)
225 4eaq_A DTMP kinase, thymidylat 96.8 0.00037 1.3E-08 66.5 1.7 45 364-409 12-59 (229)
226 2dy1_A Elongation factor G; tr 96.7 0.00021 7.1E-09 78.7 -0.4 61 369-430 3-66 (665)
227 3t34_A Dynamin-related protein 96.7 0.00044 1.5E-08 69.9 1.9 43 362-407 24-68 (360)
228 2d2e_A SUFC protein; ABC-ATPas 96.7 0.00027 9.3E-09 68.3 0.3 52 44-95 49-104 (250)
229 2qag_A Septin-2, protein NEDD5 96.7 0.00012 4.2E-09 74.6 -2.3 51 348-405 17-67 (361)
230 2gj8_A MNME, tRNA modification 96.7 0.0012 4E-08 59.0 4.3 40 373-412 2-53 (172)
231 2qtf_A Protein HFLX, GTP-bindi 96.7 0.0011 3.8E-08 67.7 4.7 37 377-413 181-228 (364)
232 2pjz_A Hypothetical protein ST 96.6 0.00019 6.6E-09 70.2 -1.4 48 44-96 50-98 (263)
233 1jjv_A Dephospho-COA kinase; P 96.6 0.00079 2.7E-08 61.9 2.8 22 377-398 4-25 (206)
234 1sxj_C Activator 1 40 kDa subu 96.5 4.6E-05 1.6E-09 76.2 -6.8 47 360-406 29-77 (340)
235 3qkt_A DNA double-strand break 96.5 0.0019 6.3E-08 64.9 5.0 29 367-396 16-44 (339)
236 3qks_A DNA double-strand break 96.5 0.0014 4.6E-08 61.3 3.7 28 368-396 17-44 (203)
237 2yvu_A Probable adenylyl-sulfa 96.5 0.00046 1.6E-08 62.5 0.5 38 370-407 8-45 (186)
238 2wjg_A FEOB, ferrous iron tran 96.5 0.0016 5.5E-08 58.0 3.7 22 377-398 9-30 (188)
239 2wji_A Ferrous iron transport 96.5 0.0028 9.5E-08 55.9 5.2 23 377-399 5-27 (165)
240 2ohf_A Protein OLA1, GTP-bindi 96.3 0.0016 5.5E-08 67.5 3.2 41 371-411 18-69 (396)
241 1y63_A LMAJ004144AAA protein; 96.3 0.0014 4.9E-08 59.5 2.5 32 367-398 2-33 (184)
242 3gd7_A Fusion complex of cysti 96.3 0.00064 2.2E-08 70.3 -0.3 51 44-96 67-118 (390)
243 2qor_A Guanylate kinase; phosp 96.2 0.0016 5.4E-08 60.1 2.2 30 371-400 8-37 (204)
244 3t61_A Gluconokinase; PSI-biol 96.2 0.0006 2.1E-08 62.6 -0.8 35 375-413 18-52 (202)
245 1ega_A Protein (GTP-binding pr 96.2 0.0014 4.7E-08 64.9 1.6 27 373-399 6-32 (301)
246 2if2_A Dephospho-COA kinase; a 96.1 0.0017 5.7E-08 59.5 1.7 22 377-398 3-24 (204)
247 2pze_A Cystic fibrosis transme 96.1 0.00098 3.3E-08 63.5 0.1 39 44-95 54-92 (229)
248 2zr9_A Protein RECA, recombina 96.1 0.0013 4.4E-08 66.9 0.7 74 371-446 57-131 (349)
249 2zej_A Dardarin, leucine-rich 96.0 0.0031 1.1E-07 56.5 2.9 23 377-399 4-26 (184)
250 2zu0_C Probable ATP-dependent 95.9 0.0011 3.9E-08 64.7 -0.3 51 44-94 66-120 (267)
251 3auy_A DNA double-strand break 95.8 0.0063 2.2E-07 61.8 4.5 31 365-396 16-46 (371)
252 3cm0_A Adenylate kinase; ATP-b 95.8 0.0037 1.3E-07 56.1 2.4 24 373-396 2-25 (186)
253 2nq2_C Hypothetical ABC transp 95.7 0.0013 4.5E-08 63.7 -1.0 41 44-96 51-91 (253)
254 1np6_A Molybdopterin-guanine d 95.6 0.0039 1.3E-07 57.2 1.9 38 375-412 6-46 (174)
255 2p5t_B PEZT; postsegregational 95.5 0.0029 1E-07 60.6 0.8 41 371-413 28-68 (253)
256 3kl4_A SRP54, signal recogniti 95.5 0.0029 9.9E-08 66.4 0.7 42 374-415 96-137 (433)
257 3lxx_A GTPase IMAP family memb 95.5 0.0073 2.5E-07 56.8 3.5 27 378-404 32-58 (239)
258 2cbz_A Multidrug resistance-as 95.4 0.0019 6.7E-08 61.8 -0.8 40 44-96 51-90 (237)
259 1lv7_A FTSH; alpha/beta domain 95.4 0.0046 1.6E-07 58.8 1.7 45 365-413 37-81 (257)
260 1q3t_A Cytidylate kinase; nucl 95.4 0.0059 2E-07 57.6 2.3 27 371-397 12-38 (236)
261 2ga8_A Hypothetical 39.9 kDa p 95.4 0.0014 4.9E-08 67.1 -2.1 37 363-399 10-48 (359)
262 3kb2_A SPBC2 prophage-derived 95.1 0.0094 3.2E-07 52.3 2.6 23 377-399 3-25 (173)
263 1qhx_A CPT, protein (chloramph 95.0 0.012 4.1E-07 52.3 3.0 25 375-399 3-27 (178)
264 2vf7_A UVRA2, excinuclease ABC 94.9 0.014 4.7E-07 66.0 3.7 39 348-392 15-53 (842)
265 3ihw_A Centg3; RAS, centaurin, 94.8 0.025 8.6E-07 50.8 4.8 36 378-413 23-67 (184)
266 1kht_A Adenylate kinase; phosp 94.8 0.013 4.6E-07 52.2 2.9 23 375-397 3-25 (192)
267 3lw7_A Adenylate kinase relate 94.8 0.014 4.6E-07 50.9 2.8 19 377-395 3-21 (179)
268 1jal_A YCHF protein; nucleotid 94.7 0.016 5.5E-07 59.4 3.5 36 375-410 2-48 (363)
269 2ius_A DNA translocase FTSK; n 94.7 0.0086 2.9E-07 64.1 1.5 49 366-414 158-208 (512)
270 1fzq_A ADP-ribosylation factor 94.7 0.016 5.4E-07 51.8 3.0 36 377-412 18-61 (181)
271 2rhm_A Putative kinase; P-loop 94.7 0.012 4.1E-07 52.8 2.2 25 373-397 3-27 (193)
272 3k53_A Ferrous iron transport 94.7 0.012 4.2E-07 56.7 2.4 24 377-400 5-28 (271)
273 1ypw_A Transitional endoplasmi 94.6 0.011 3.7E-07 66.5 2.0 42 370-413 233-274 (806)
274 1vht_A Dephospho-COA kinase; s 94.5 0.016 5.6E-07 53.5 2.8 24 374-397 3-26 (218)
275 4ag6_A VIRB4 ATPase, type IV s 94.5 0.01 3.4E-07 60.4 1.3 36 374-409 34-69 (392)
276 2v54_A DTMP kinase, thymidylat 94.5 0.017 6E-07 52.3 2.8 27 373-399 2-28 (204)
277 2bbs_A Cystic fibrosis transme 94.4 0.0055 1.9E-07 60.7 -0.7 37 44-93 84-120 (290)
278 4fcw_A Chaperone protein CLPB; 94.3 0.012 4E-07 57.1 1.3 34 376-409 48-82 (311)
279 2jaq_A Deoxyguanosine kinase; 94.3 0.019 6.6E-07 51.7 2.7 21 377-397 2-22 (205)
280 3sop_A Neuronal-specific septi 94.3 0.003 1E-07 61.8 -3.0 52 44-97 22-73 (270)
281 3r20_A Cytidylate kinase; stru 94.2 0.012 4.2E-07 56.5 1.3 33 374-406 8-43 (233)
282 1gtv_A TMK, thymidylate kinase 94.2 0.0054 1.9E-07 56.1 -1.3 25 377-401 2-26 (214)
283 3trf_A Shikimate kinase, SK; a 94.2 0.023 7.8E-07 50.9 2.9 24 374-397 4-27 (185)
284 3cf0_A Transitional endoplasmi 94.2 0.016 5.3E-07 57.0 1.9 41 371-413 45-85 (301)
285 3iij_A Coilin-interacting nucl 94.2 0.014 4.6E-07 52.3 1.3 24 373-396 9-32 (180)
286 1ex7_A Guanylate kinase; subst 94.1 0.022 7.4E-07 52.9 2.6 21 377-397 3-23 (186)
287 2plr_A DTMP kinase, probable t 94.1 0.024 8.4E-07 51.3 2.9 27 374-400 3-29 (213)
288 2ygr_A Uvrabc system protein A 94.1 0.023 8E-07 65.1 3.3 31 362-392 33-63 (993)
289 2r6f_A Excinuclease ABC subuni 94.1 0.024 8.1E-07 64.8 3.3 31 362-392 31-61 (972)
290 1ly1_A Polynucleotide kinase; 94.0 0.024 8.2E-07 50.0 2.7 22 376-397 3-24 (181)
291 2ze6_A Isopentenyl transferase 94.0 0.022 7.7E-07 54.6 2.7 22 377-398 3-24 (253)
292 3pih_A Uvrabc system protein A 94.0 0.021 7.1E-07 65.1 2.7 31 362-392 11-41 (916)
293 1gvn_B Zeta; postsegregational 93.9 0.025 8.5E-07 55.5 2.8 35 374-410 32-66 (287)
294 1via_A Shikimate kinase; struc 93.9 0.021 7.1E-07 50.9 2.1 22 377-398 6-27 (175)
295 1htw_A HI0065; nucleotide-bind 93.9 0.0028 9.6E-08 57.2 -3.7 47 43-95 52-98 (158)
296 1uf9_A TT1252 protein; P-loop, 93.9 0.024 8.2E-07 51.2 2.5 24 375-398 8-31 (203)
297 1tev_A UMP-CMP kinase; ploop, 93.9 0.027 9.3E-07 50.2 2.8 24 374-397 2-25 (196)
298 2vli_A Antibiotic resistance p 93.9 0.025 8.4E-07 50.3 2.5 24 374-397 4-27 (183)
299 2wwf_A Thymidilate kinase, put 93.9 0.025 8.7E-07 51.5 2.6 25 373-397 8-32 (212)
300 1nn5_A Similar to deoxythymidy 93.8 0.026 8.8E-07 51.5 2.5 26 372-397 6-31 (215)
301 2c95_A Adenylate kinase 1; tra 93.8 0.026 9.1E-07 50.6 2.6 25 373-397 7-31 (196)
302 2erx_A GTP-binding protein DI- 93.8 0.045 1.5E-06 47.1 3.9 21 377-397 5-25 (172)
303 2r6a_A DNAB helicase, replicat 93.7 0.005 1.7E-07 64.3 -2.7 50 362-411 190-240 (454)
304 3cbq_A GTP-binding protein REM 93.6 0.046 1.6E-06 49.6 3.9 22 377-398 25-46 (195)
305 3q72_A GTP-binding protein RAD 93.6 0.03 1E-06 48.3 2.4 22 378-399 5-26 (166)
306 1z0j_A RAB-22, RAS-related pro 93.5 0.043 1.5E-06 47.3 3.2 22 378-399 9-30 (170)
307 2nzj_A GTP-binding protein REM 93.4 0.034 1.2E-06 48.2 2.6 23 377-399 6-28 (175)
308 3b1v_A Ferrous iron uptake tra 93.4 0.034 1.2E-06 54.2 2.8 23 377-399 5-27 (272)
309 3tw8_B RAS-related protein RAB 93.4 0.036 1.2E-06 48.3 2.7 21 378-398 12-32 (181)
310 2ged_A SR-beta, signal recogni 93.4 0.03 1E-06 49.9 2.1 23 377-399 50-72 (193)
311 3llm_A ATP-dependent RNA helic 93.3 0.025 8.7E-07 53.2 1.5 25 372-396 73-97 (235)
312 2e87_A Hypothetical protein PH 93.3 0.038 1.3E-06 55.6 2.9 25 375-399 167-191 (357)
313 1moz_A ARL1, ADP-ribosylation 93.2 0.029 9.9E-07 49.3 1.8 22 376-397 19-40 (183)
314 1nks_A Adenylate kinase; therm 93.2 0.035 1.2E-06 49.4 2.3 23 377-399 3-25 (194)
315 2lkc_A Translation initiation 93.2 0.048 1.6E-06 47.5 3.1 24 374-397 7-30 (178)
316 2z0h_A DTMP kinase, thymidylat 93.1 0.04 1.4E-06 49.4 2.6 23 377-399 2-24 (197)
317 1v5w_A DMC1, meiotic recombina 93.1 0.044 1.5E-06 55.1 3.1 43 371-413 118-167 (343)
318 1fnn_A CDC6P, cell division co 93.1 0.044 1.5E-06 54.3 3.1 34 377-410 46-81 (389)
319 1z2a_A RAS-related protein RAB 93.1 0.032 1.1E-06 48.0 1.8 20 378-397 8-27 (168)
320 2z43_A DNA repair and recombin 93.1 0.032 1.1E-06 55.5 2.0 42 371-412 103-151 (324)
321 3q85_A GTP-binding protein REM 93.1 0.042 1.4E-06 47.5 2.5 21 378-398 5-25 (169)
322 2ce2_X GTPase HRAS; signaling 93.0 0.029 1E-06 47.8 1.4 21 378-398 6-26 (166)
323 1aky_A Adenylate kinase; ATP:A 93.0 0.048 1.6E-06 50.5 3.0 25 374-398 3-27 (220)
324 1kao_A RAP2A; GTP-binding prot 93.0 0.035 1.2E-06 47.4 1.9 21 377-397 5-25 (167)
325 3ake_A Cytidylate kinase; CMP 93.0 0.045 1.5E-06 49.6 2.6 21 377-397 4-24 (208)
326 1u8z_A RAS-related protein RAL 92.9 0.035 1.2E-06 47.5 1.8 21 377-397 6-26 (168)
327 2bwj_A Adenylate kinase 5; pho 92.9 0.044 1.5E-06 49.2 2.5 25 373-397 10-34 (199)
328 2dyk_A GTP-binding protein; GT 92.9 0.037 1.3E-06 47.4 1.9 23 377-399 3-25 (161)
329 1zuh_A Shikimate kinase; alpha 92.9 0.05 1.7E-06 47.9 2.8 23 375-397 7-29 (168)
330 1xjc_A MOBB protein homolog; s 92.8 0.049 1.7E-06 49.9 2.7 25 376-400 5-29 (169)
331 3iby_A Ferrous iron transport 92.8 0.058 2E-06 51.9 3.4 23 377-399 3-25 (256)
332 3lxw_A GTPase IMAP family memb 92.8 0.045 1.5E-06 52.2 2.5 23 377-399 23-45 (247)
333 1svi_A GTP-binding protein YSX 92.8 0.039 1.3E-06 49.1 1.9 22 377-398 25-46 (195)
334 3pqc_A Probable GTP-binding pr 92.8 0.043 1.5E-06 48.5 2.2 23 377-399 25-47 (195)
335 1zd8_A GTP:AMP phosphotransfer 92.7 0.048 1.7E-06 50.8 2.5 25 373-397 5-29 (227)
336 2qby_A CDC6 homolog 1, cell di 92.7 0.027 9.2E-07 55.5 0.8 38 373-410 43-84 (386)
337 1ky3_A GTP-binding protein YPT 92.6 0.041 1.4E-06 48.0 1.9 22 377-398 10-31 (182)
338 1c1y_A RAS-related protein RAP 92.6 0.041 1.4E-06 47.3 1.8 20 378-397 6-25 (167)
339 1z08_A RAS-related protein RAB 92.6 0.041 1.4E-06 47.5 1.8 21 377-397 8-28 (170)
340 2ce7_A Cell division protein F 92.6 0.017 5.9E-07 61.1 -0.7 36 362-399 38-73 (476)
341 1ek0_A Protein (GTP-binding pr 92.6 0.041 1.4E-06 47.3 1.8 20 378-397 6-25 (170)
342 2cdn_A Adenylate kinase; phosp 92.6 0.06 2.1E-06 48.9 3.0 24 374-397 19-42 (201)
343 2cxx_A Probable GTP-binding pr 92.6 0.043 1.5E-06 48.4 1.9 21 378-398 4-24 (190)
344 3fb4_A Adenylate kinase; psych 92.5 0.054 1.9E-06 49.7 2.6 21 377-397 2-22 (216)
345 2dby_A GTP-binding protein; GD 92.5 0.052 1.8E-06 55.5 2.8 31 378-408 4-45 (368)
346 2pbr_A DTMP kinase, thymidylat 92.5 0.055 1.9E-06 48.2 2.6 21 377-397 2-22 (195)
347 1wms_A RAB-9, RAB9, RAS-relate 92.5 0.044 1.5E-06 47.8 1.9 20 378-397 10-29 (177)
348 3bos_A Putative DNA replicatio 92.5 0.063 2.2E-06 49.1 3.0 26 374-399 51-76 (242)
349 2fn4_A P23, RAS-related protei 92.5 0.039 1.3E-06 48.1 1.5 22 377-398 11-32 (181)
350 1g16_A RAS-related protein SEC 92.4 0.039 1.3E-06 47.5 1.4 21 378-398 6-26 (170)
351 3clv_A RAB5 protein, putative; 92.4 0.045 1.5E-06 48.3 1.9 22 377-398 9-30 (208)
352 1r2q_A RAS-related protein RAB 92.4 0.045 1.6E-06 47.0 1.8 20 378-397 9-28 (170)
353 3a4m_A L-seryl-tRNA(SEC) kinas 92.3 0.063 2.2E-06 51.5 2.9 25 374-398 3-27 (260)
354 1ukz_A Uridylate kinase; trans 92.3 0.061 2.1E-06 48.8 2.6 24 374-397 14-37 (203)
355 3t1o_A Gliding protein MGLA; G 92.3 0.05 1.7E-06 48.1 2.0 23 378-400 17-39 (198)
356 1qf9_A UMP/CMP kinase, protein 92.3 0.058 2E-06 47.9 2.4 23 375-397 6-28 (194)
357 4dsu_A GTPase KRAS, isoform 2B 92.3 0.049 1.7E-06 47.9 1.9 20 378-397 7-26 (189)
358 2hxs_A RAB-26, RAS-related pro 92.2 0.057 1.9E-06 47.1 2.3 21 378-398 9-29 (178)
359 1wf3_A GTP-binding protein; GT 92.2 0.063 2.2E-06 53.0 2.8 22 377-398 9-30 (301)
360 1e6c_A Shikimate kinase; phosp 92.2 0.056 1.9E-06 47.5 2.1 22 376-397 3-24 (173)
361 3bc1_A RAS-related protein RAB 92.2 0.05 1.7E-06 47.9 1.8 21 377-397 13-33 (195)
362 3dl0_A Adenylate kinase; phosp 92.2 0.064 2.2E-06 49.3 2.6 21 377-397 2-22 (216)
363 2pt5_A Shikimate kinase, SK; a 92.1 0.069 2.4E-06 46.8 2.7 21 377-397 2-22 (168)
364 2xtp_A GTPase IMAP family memb 92.1 0.06 2.1E-06 51.0 2.4 22 377-398 24-45 (260)
365 1ksh_A ARF-like protein 2; sma 92.1 0.07 2.4E-06 47.1 2.7 23 376-398 19-41 (186)
366 2oil_A CATX-8, RAS-related pro 92.1 0.052 1.8E-06 48.4 1.8 20 378-397 28-47 (193)
367 1ko7_A HPR kinase/phosphatase; 92.1 0.12 4.1E-06 51.9 4.7 45 363-408 133-181 (314)
368 1upt_A ARL1, ADP-ribosylation 92.0 0.053 1.8E-06 46.8 1.8 21 377-397 9-29 (171)
369 2w58_A DNAI, primosome compone 92.0 0.051 1.7E-06 49.3 1.8 27 376-402 55-81 (202)
370 1zak_A Adenylate kinase; ATP:A 92.0 0.055 1.9E-06 50.1 2.0 24 374-397 4-27 (222)
371 3t5d_A Septin-7; GTP-binding p 92.0 0.062 2.1E-06 51.8 2.4 21 378-398 11-31 (274)
372 1m7b_A RND3/RHOE small GTP-bin 92.0 0.081 2.8E-06 46.9 3.0 21 378-398 10-30 (184)
373 1r8s_A ADP-ribosylation factor 91.9 0.056 1.9E-06 46.5 1.8 20 378-397 3-22 (164)
374 2a9k_A RAS-related protein RAL 91.9 0.057 1.9E-06 47.3 1.8 20 378-397 21-40 (187)
375 3con_A GTPase NRAS; structural 91.9 0.056 1.9E-06 48.0 1.8 20 378-397 24-43 (190)
376 2iyv_A Shikimate kinase, SK; t 91.9 0.061 2.1E-06 48.0 2.0 22 376-397 3-24 (184)
377 1z0f_A RAB14, member RAS oncog 91.9 0.057 2E-06 46.9 1.8 20 378-397 18-37 (179)
378 2g6b_A RAS-related protein RAB 91.9 0.057 2E-06 47.1 1.8 21 377-397 12-32 (180)
379 2h57_A ADP-ribosylation factor 91.8 0.068 2.3E-06 47.6 2.3 22 378-399 24-45 (190)
380 3t5g_A GTP-binding protein RHE 91.8 0.1 3.5E-06 45.7 3.5 21 377-397 8-28 (181)
381 2y8e_A RAB-protein 6, GH09086P 91.7 0.053 1.8E-06 47.1 1.4 20 378-397 17-36 (179)
382 2il1_A RAB12; G-protein, GDP, 91.7 0.083 2.8E-06 47.4 2.7 21 378-398 29-49 (192)
383 1a7j_A Phosphoribulokinase; tr 91.7 0.068 2.3E-06 52.6 2.3 25 374-398 4-28 (290)
384 3a1s_A Iron(II) transport prot 91.6 0.082 2.8E-06 50.9 2.8 23 377-399 7-29 (258)
385 4bas_A ADP-ribosylation factor 91.6 0.088 3E-06 46.8 2.8 21 377-397 19-39 (199)
386 2efe_B Small GTP-binding prote 91.5 0.065 2.2E-06 46.8 1.8 21 378-398 15-35 (181)
387 1vg8_A RAS-related protein RAB 91.5 0.065 2.2E-06 48.1 1.9 22 377-398 10-31 (207)
388 3b9q_A Chloroplast SRP recepto 91.5 0.027 9.3E-07 55.9 -0.8 54 42-95 118-179 (302)
389 1zbd_A Rabphilin-3A; G protein 91.5 0.082 2.8E-06 47.5 2.5 21 378-398 11-31 (203)
390 3b9p_A CG5977-PA, isoform A; A 91.4 0.074 2.5E-06 51.2 2.3 26 374-399 53-78 (297)
391 3i8s_A Ferrous iron transport 91.4 0.078 2.7E-06 51.4 2.4 23 377-399 5-27 (274)
392 1nrj_B SR-beta, signal recogni 91.4 0.072 2.5E-06 48.5 2.1 23 377-399 14-36 (218)
393 2bov_A RAla, RAS-related prote 91.4 0.067 2.3E-06 47.9 1.8 20 378-397 17-36 (206)
394 1mh1_A RAC1; GTP-binding, GTPa 91.4 0.068 2.3E-06 46.8 1.8 21 377-397 7-27 (186)
395 3tkl_A RAS-related protein RAB 91.3 0.071 2.4E-06 47.3 1.8 20 378-397 19-38 (196)
396 2bme_A RAB4A, RAS-related prot 91.3 0.063 2.1E-06 47.2 1.4 21 377-397 12-32 (186)
397 2wsm_A Hydrogenase expression/ 91.3 0.068 2.3E-06 48.9 1.7 23 376-398 31-53 (221)
398 3iev_A GTP-binding protein ERA 91.2 0.092 3.2E-06 51.8 2.8 23 376-398 11-33 (308)
399 2gf0_A GTP-binding protein DI- 91.2 0.065 2.2E-06 47.7 1.5 21 377-397 10-30 (199)
400 2gf9_A RAS-related protein RAB 91.2 0.073 2.5E-06 47.3 1.8 21 378-398 25-45 (189)
401 2xb4_A Adenylate kinase; ATP-b 91.2 0.095 3.2E-06 48.9 2.7 21 377-397 2-22 (223)
402 3kkq_A RAS-related protein M-R 91.2 0.074 2.5E-06 46.7 1.8 20 378-397 21-40 (183)
403 1uj2_A Uridine-cytidine kinase 91.2 0.094 3.2E-06 49.8 2.6 22 376-397 23-44 (252)
404 3tlx_A Adenylate kinase 2; str 91.1 0.099 3.4E-06 49.6 2.8 24 374-397 28-51 (243)
405 1jbk_A CLPB protein; beta barr 91.1 0.11 3.7E-06 45.3 2.8 25 375-399 43-67 (195)
406 4dhe_A Probable GTP-binding pr 91.1 0.05 1.7E-06 49.7 0.6 23 377-399 31-53 (223)
407 2grj_A Dephospho-COA kinase; T 91.1 0.098 3.4E-06 48.4 2.6 23 376-398 13-35 (192)
408 2qu8_A Putative nucleolar GTP- 91.1 0.11 3.7E-06 48.1 3.0 22 377-398 31-52 (228)
409 1zj6_A ADP-ribosylation factor 91.0 0.089 3E-06 46.7 2.1 21 377-397 18-38 (187)
410 3v9p_A DTMP kinase, thymidylat 90.9 0.1 3.4E-06 49.8 2.6 28 372-399 22-49 (227)
411 2o52_A RAS-related protein RAB 90.9 0.091 3.1E-06 47.5 2.2 20 378-397 28-47 (200)
412 1jwy_B Dynamin A GTPase domain 90.9 0.093 3.2E-06 51.0 2.4 23 377-399 26-48 (315)
413 1sky_E F1-ATPase, F1-ATP synth 90.8 0.11 3.8E-06 54.9 3.0 38 362-400 139-176 (473)
414 2f7s_A C25KG, RAS-related prot 90.8 0.11 3.7E-06 47.3 2.6 22 378-399 28-49 (217)
415 4djt_A GTP-binding nuclear pro 90.8 0.079 2.7E-06 48.2 1.7 21 378-398 14-34 (218)
416 3bwd_D RAC-like GTP-binding pr 90.8 0.1 3.6E-06 45.5 2.4 21 377-397 10-30 (182)
417 2fu5_C RAS-related protein RAB 90.8 0.081 2.8E-06 46.5 1.6 22 377-398 10-31 (183)
418 2fg5_A RAB-22B, RAS-related pr 90.7 0.076 2.6E-06 47.5 1.5 20 378-397 26-45 (192)
419 2a5j_A RAS-related protein RAB 90.7 0.086 3E-06 47.0 1.8 20 378-397 24-43 (191)
420 1x3s_A RAS-related protein RAB 90.7 0.086 2.9E-06 46.6 1.8 21 377-397 17-37 (195)
421 3def_A T7I23.11 protein; chlor 90.7 0.1 3.5E-06 49.9 2.4 22 378-399 39-60 (262)
422 2q3h_A RAS homolog gene family 90.7 0.11 3.8E-06 46.5 2.5 22 377-398 22-43 (201)
423 1z06_A RAS-related protein RAB 90.7 0.089 3E-06 46.8 1.9 20 378-397 23-42 (189)
424 3oes_A GTPase rhebl1; small GT 90.6 0.079 2.7E-06 47.8 1.4 22 377-398 26-47 (201)
425 3cnl_A YLQF, putative uncharac 90.6 0.12 4E-06 50.2 2.7 29 376-404 100-128 (262)
426 3be4_A Adenylate kinase; malar 90.6 0.11 3.8E-06 48.1 2.5 24 374-397 4-27 (217)
427 2cjw_A GTP-binding protein GEM 90.5 0.091 3.1E-06 47.5 1.8 21 377-397 8-28 (192)
428 2h17_A ADP-ribosylation factor 90.5 0.088 3E-06 46.5 1.7 20 378-397 24-43 (181)
429 3reg_A RHO-like small GTPase; 90.5 0.093 3.2E-06 46.9 1.8 21 378-398 26-46 (194)
430 3szr_A Interferon-induced GTP- 90.5 0.016 5.5E-07 63.0 -3.9 54 43-96 64-122 (608)
431 2atv_A RERG, RAS-like estrogen 90.5 0.094 3.2E-06 47.0 1.9 21 377-397 30-50 (196)
432 1zd9_A ADP-ribosylation factor 90.4 0.095 3.2E-06 46.7 1.8 20 378-397 25-44 (188)
433 3dz8_A RAS-related protein RAB 90.4 0.084 2.9E-06 47.1 1.4 22 378-399 26-47 (191)
434 2bcg_Y Protein YP2, GTP-bindin 90.4 0.084 2.9E-06 47.6 1.4 21 377-397 10-30 (206)
435 3cph_A RAS-related protein SEC 90.4 0.096 3.3E-06 47.2 1.8 21 377-397 22-42 (213)
436 2p5s_A RAS and EF-hand domain 90.3 0.098 3.3E-06 47.1 1.8 22 377-398 30-51 (199)
437 4edh_A DTMP kinase, thymidylat 90.3 0.14 4.6E-06 48.2 2.9 27 373-399 4-30 (213)
438 1gwn_A RHO-related GTP-binding 90.3 0.14 4.9E-06 46.8 3.0 28 378-405 31-63 (205)
439 1e4v_A Adenylate kinase; trans 90.3 0.11 3.9E-06 47.8 2.3 21 377-397 2-22 (214)
440 2j1l_A RHO-related GTP-binding 90.2 0.11 3.9E-06 47.5 2.2 20 378-397 37-56 (214)
441 2b6h_A ADP-ribosylation factor 90.2 0.12 4.1E-06 46.5 2.3 21 377-397 31-51 (192)
442 2f6r_A COA synthase, bifunctio 90.1 0.11 3.9E-06 50.5 2.3 23 375-397 75-97 (281)
443 3llu_A RAS-related GTP-binding 90.1 0.12 4.1E-06 46.5 2.3 21 378-398 23-43 (196)
444 1ak2_A Adenylate kinase isoenz 90.1 0.15 5.1E-06 47.8 3.0 24 374-397 15-38 (233)
445 1njg_A DNA polymerase III subu 90.1 0.15 5.1E-06 46.0 2.8 23 376-398 46-68 (250)
446 2iwr_A Centaurin gamma 1; ANK 90.0 0.079 2.7E-06 46.3 0.9 21 377-397 9-29 (178)
447 1ltq_A Polynucleotide kinase; 90.0 0.14 4.7E-06 49.5 2.7 22 376-397 3-24 (301)
448 2ew1_A RAS-related protein RAB 89.9 0.096 3.3E-06 47.9 1.4 20 378-397 29-48 (201)
449 2yc2_C IFT27, small RAB-relate 89.8 0.076 2.6E-06 47.5 0.6 22 377-398 22-43 (208)
450 2fh5_B SR-beta, signal recogni 89.8 0.16 5.4E-06 46.1 2.8 21 377-397 9-29 (214)
451 1rj9_A FTSY, signal recognitio 89.8 0.073 2.5E-06 52.9 0.6 53 42-94 120-179 (304)
452 2x77_A ADP-ribosylation factor 89.8 0.11 3.9E-06 46.0 1.8 21 377-397 24-44 (189)
453 2aka_B Dynamin-1; fusion prote 89.7 0.12 3.9E-06 49.8 1.9 23 377-399 28-50 (299)
454 1h65_A Chloroplast outer envel 89.7 0.13 4.6E-06 49.2 2.4 23 377-399 41-63 (270)
455 2i1q_A DNA repair and recombin 89.7 0.16 5.5E-06 50.0 2.9 27 371-397 94-120 (322)
456 3zvl_A Bifunctional polynucleo 89.7 0.17 5.7E-06 52.2 3.1 26 372-397 255-280 (416)
457 2fv8_A H6, RHO-related GTP-bin 89.6 0.11 3.6E-06 47.2 1.5 22 377-398 27-48 (207)
458 3c5c_A RAS-like protein 12; GD 89.6 0.12 4.2E-06 46.1 1.9 28 378-405 24-56 (187)
459 2h92_A Cytidylate kinase; ross 89.4 0.15 5.1E-06 46.8 2.3 23 375-397 3-25 (219)
460 3h4m_A Proteasome-activating n 89.4 0.16 5.6E-06 48.4 2.7 27 373-399 49-75 (285)
461 3umf_A Adenylate kinase; rossm 89.4 0.13 4.5E-06 48.7 2.0 25 373-397 27-51 (217)
462 2p65_A Hypothetical protein PF 89.4 0.14 4.7E-06 44.8 2.0 25 375-399 43-67 (187)
463 2og2_A Putative signal recogni 89.4 0.056 1.9E-06 55.2 -0.7 54 42-95 175-236 (359)
464 3l0i_B RAS-related protein RAB 89.3 0.095 3.2E-06 47.2 0.9 22 378-399 36-57 (199)
465 2zts_A Putative uncharacterize 89.3 0.22 7.5E-06 46.0 3.4 25 371-395 26-50 (251)
466 1l8q_A Chromosomal replication 89.3 0.14 4.7E-06 50.2 2.1 27 375-401 37-63 (324)
467 3lv8_A DTMP kinase, thymidylat 89.3 0.16 5.6E-06 48.6 2.6 26 374-399 26-51 (236)
468 2hf9_A Probable hydrogenase ni 89.2 0.15 5.3E-06 46.7 2.3 23 376-398 39-61 (226)
469 4tmk_A Protein (thymidylate ki 89.2 0.17 5.9E-06 47.5 2.6 27 374-400 2-28 (213)
470 1sxj_D Activator 1 41 kDa subu 89.1 0.051 1.7E-06 53.3 -1.2 22 378-399 61-82 (353)
471 2atx_A Small GTP binding prote 89.0 0.13 4.3E-06 45.9 1.5 20 378-397 21-40 (194)
472 3dm5_A SRP54, signal recogniti 89.0 0.12 4E-06 54.3 1.5 40 374-413 99-138 (443)
473 1p5z_B DCK, deoxycytidine kina 89.0 0.17 5.9E-06 48.2 2.5 27 373-399 22-48 (263)
474 2gco_A H9, RHO-related GTP-bin 89.0 0.13 4.3E-06 46.5 1.4 20 378-397 28-47 (201)
475 2v3c_C SRP54, signal recogniti 89.0 0.071 2.4E-06 55.6 -0.2 38 376-413 100-137 (432)
476 2g3y_A GTP-binding protein GEM 88.8 0.19 6.5E-06 46.8 2.6 21 378-398 40-60 (211)
477 3a8t_A Adenylate isopentenyltr 88.7 0.2 6.7E-06 50.8 2.8 26 374-399 39-64 (339)
478 2ocp_A DGK, deoxyguanosine kin 88.7 0.19 6.5E-06 47.2 2.6 26 374-399 1-26 (241)
479 4dcu_A GTP-binding protein ENG 88.6 0.17 5.9E-06 52.5 2.4 22 377-398 25-46 (456)
480 3tmk_A Thymidylate kinase; pho 88.6 0.2 6.7E-06 47.4 2.5 29 373-401 3-31 (216)
481 2qz4_A Paraplegin; AAA+, SPG7, 88.5 0.21 7.3E-06 46.7 2.8 24 375-398 39-62 (262)
482 4gzl_A RAS-related C3 botulinu 88.5 0.21 7.3E-06 45.2 2.7 21 377-397 32-52 (204)
483 2npi_A Protein CLP1; CLP1-PCF1 88.5 0.07 2.4E-06 56.1 -0.7 45 44-97 158-207 (460)
484 2qmh_A HPR kinase/phosphorylas 88.4 0.33 1.1E-05 45.8 4.0 34 363-397 23-56 (205)
485 1ypw_A Transitional endoplasmi 88.4 0.075 2.6E-06 59.7 -0.6 43 369-413 505-547 (806)
486 3cpj_B GTP-binding protein YPT 88.4 0.17 5.7E-06 46.6 1.9 22 377-398 15-36 (223)
487 3d3q_A TRNA delta(2)-isopenten 88.2 0.21 7.2E-06 50.6 2.6 24 376-399 8-31 (340)
488 3ld9_A DTMP kinase, thymidylat 88.1 0.24 8.2E-06 47.1 2.8 27 373-399 19-45 (223)
489 1u94_A RECA protein, recombina 88.0 0.27 9.3E-06 49.9 3.4 49 363-412 49-101 (356)
490 2hup_A RAS-related protein RAB 88.0 0.16 5.5E-06 46.0 1.5 20 378-397 32-51 (201)
491 3exa_A TRNA delta(2)-isopenten 87.8 0.25 8.6E-06 49.7 2.9 25 375-399 3-27 (322)
492 2z4s_A Chromosomal replication 87.8 0.16 5.6E-06 52.7 1.6 25 375-399 130-154 (440)
493 3bh0_A DNAB-like replicative h 87.8 0.25 8.5E-06 48.9 2.8 36 362-397 55-90 (315)
494 2j0v_A RAC-like GTP-binding pr 87.6 0.17 5.9E-06 45.8 1.4 21 377-397 11-31 (212)
495 3sr0_A Adenylate kinase; phosp 87.6 0.26 8.8E-06 46.1 2.6 21 377-397 2-22 (206)
496 3crm_A TRNA delta(2)-isopenten 87.5 0.25 8.6E-06 49.7 2.7 24 376-399 6-29 (323)
497 3q3j_B RHO-related GTP-binding 87.3 0.21 7E-06 45.9 1.8 29 378-406 30-63 (214)
498 2orw_A Thymidine kinase; TMTK, 87.0 0.29 9.8E-06 44.7 2.6 22 374-395 2-24 (184)
499 3e70_C DPA, signal recognition 86.8 0.13 4.4E-06 51.7 0.1 53 42-94 147-206 (328)
500 1lnz_A SPO0B-associated GTP-bi 86.7 0.39 1.3E-05 48.4 3.6 45 366-410 149-204 (342)
No 1
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.90 E-value=3.3e-23 Score=203.61 Aligned_cols=120 Identities=22% Similarity=0.318 Sum_probs=104.8
Q ss_pred ccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEE
Q psy7411 347 SGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGL 426 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~ 426 (474)
..++++||+|.| +++.+++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.....+.|+.+||
T Consensus 14 ~~l~i~~l~~~y-~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~ 92 (256)
T 1vpl_A 14 GAVVVKDLRKRI-GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISY 92 (256)
T ss_dssp CCEEEEEEEEEE-TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEE
T ss_pred CeEEEEEEEEEE-CCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEE
Confidence 468999999999 5678999999999999999999999999999999999999999999999999986544566788999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhH
Q psy7411 427 CPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSY 467 (474)
Q Consensus 427 ~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~ 467 (474)
+||++.+++.+||+||+.+....++.+.++..+++++++..
T Consensus 93 v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~ 133 (256)
T 1vpl_A 93 LPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEI 133 (256)
T ss_dssp ECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred EcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 99999999999999999998766666665555556666554
No 2
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.90 E-value=6e-23 Score=202.61 Aligned_cols=120 Identities=23% Similarity=0.345 Sum_probs=103.4
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecC---cchHHhhcce
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIW---YEMGKVRESL 424 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~---~~~~~ir~~I 424 (474)
.++++||++.| +++++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++. ....+.|+.+
T Consensus 24 ~l~i~~l~~~y-~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i 102 (263)
T 2olj_A 24 MIDVHQLKKSF-GSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEV 102 (263)
T ss_dssp SEEEEEEEEEE-TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHE
T ss_pred eEEEEeEEEEE-CCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcE
Confidence 58999999999 5678999999999999999999999999999999999999999999999999984 2334567789
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHH-hcCCCCHHHHHHHHHHHHhHh
Q psy7411 425 GLCPQYDLLFEELTVEDHLQFFA-KGKEFNGITYGRALLLMMSYV 468 (474)
Q Consensus 425 G~~~Q~~~L~~~LTV~E~L~~~~-~lkg~~~~~~~~~l~~~~~~~ 468 (474)
||+||++.+++.+||+||+.+.. ..++.+.++..+++++++..+
T Consensus 103 ~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 147 (263)
T 2olj_A 103 GMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKV 147 (263)
T ss_dssp EEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHT
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 99999999999999999999864 566766666566666666543
No 3
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.90 E-value=1.8e-23 Score=215.06 Aligned_cols=120 Identities=21% Similarity=0.371 Sum_probs=106.6
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecC---cchHHhhcce
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIW---YEMGKVRESL 424 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~---~~~~~ir~~I 424 (474)
.++++||+|.| +++.+|+++||++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++. ......++++
T Consensus 4 ~l~i~~ls~~y-~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~i 82 (359)
T 3fvq_A 4 ALHIGHLSKSF-QNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRL 82 (359)
T ss_dssp CEEEEEEEEEE-TTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCC
T ss_pred EEEEEeEEEEE-CCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCE
Confidence 58999999999 5688999999999999999999999999999999999999999999999999983 2223446779
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhHh
Q psy7411 425 GLCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSYV 468 (474)
Q Consensus 425 G~~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~~ 468 (474)
||+||++.+|+.+||+||+.+..+.++.++++..+++++++..+
T Consensus 83 g~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~ 126 (359)
T 3fvq_A 83 GYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELT 126 (359)
T ss_dssp EEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHH
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHc
Confidence 99999999999999999999987777777777777888877654
No 4
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.90 E-value=3.1e-23 Score=214.74 Aligned_cols=119 Identities=23% Similarity=0.338 Sum_probs=107.9
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEEE
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLC 427 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~ 427 (474)
.++++|++|.| +++.+|+++||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.... ..++.+||+
T Consensus 3 ~l~~~~l~~~y-g~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~-~~~r~ig~V 80 (381)
T 3rlf_A 3 SVQLQNVTKAW-GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTP-PAERGVGMV 80 (381)
T ss_dssp CEEEEEEEEEE-TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCC-GGGSCEEEE
T ss_pred EEEEEeEEEEE-CCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCC-HHHCCEEEE
Confidence 47899999999 5688999999999999999999999999999999999999999999999999986432 235679999
Q ss_pred cCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhHh
Q psy7411 428 PQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSYV 468 (474)
Q Consensus 428 ~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~~ 468 (474)
+|++.+++.+||+||+.+..+.++.++++..+++++++..+
T Consensus 81 fQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~ 121 (381)
T 3rlf_A 81 FQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVL 121 (381)
T ss_dssp CTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred ecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 99999999999999999998889999888888888887654
No 5
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.90 E-value=5.3e-23 Score=211.93 Aligned_cols=123 Identities=27% Similarity=0.344 Sum_probs=109.1
Q ss_pred cccEEEEeeEEEEcC---CceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc----chH
Q psy7411 346 ASGIQLRGLTKIYKT---GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY----EMG 418 (474)
Q Consensus 346 ~~~I~i~~Lsk~y~~---~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~----~~~ 418 (474)
...++++||+|.|++ ...+|+++||++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++.. ...
T Consensus 22 ~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~ 101 (366)
T 3tui_C 22 KHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELT 101 (366)
T ss_dssp -CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHH
T ss_pred CceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHH
Confidence 357999999999953 2469999999999999999999999999999999999999999999999999864 233
Q ss_pred HhhcceEEEcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhHh
Q psy7411 419 KVRESLGLCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSYV 468 (474)
Q Consensus 419 ~ir~~IG~~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~~ 468 (474)
+.|+.+||+||++.+++.+||+||+.+....++.++++..+++++++..+
T Consensus 102 ~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~v 151 (366)
T 3tui_C 102 KARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLV 151 (366)
T ss_dssp HHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred HHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc
Confidence 45788999999999999999999999998888888888888888887764
No 6
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.89 E-value=9.9e-23 Score=195.97 Aligned_cols=120 Identities=21% Similarity=0.334 Sum_probs=102.9
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcc-h---HHhh-c
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYE-M---GKVR-E 422 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~-~---~~ir-~ 422 (474)
.++++|+++.| +++++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... . .+.| +
T Consensus 4 ~l~~~~l~~~y-~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 82 (224)
T 2pcj_A 4 ILRAENIKKVI-RGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNR 82 (224)
T ss_dssp EEEEEEEEEEE-TTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHH
T ss_pred EEEEEeEEEEE-CCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhC
Confidence 48999999999 557899999999999999999999999999999999999999999999999998532 1 2333 6
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhHh
Q psy7411 423 SLGLCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSYV 468 (474)
Q Consensus 423 ~IG~~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~~ 468 (474)
.+||+||++.+++.+||+||+.+....++.+.++..+++++++..+
T Consensus 83 ~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~ 128 (224)
T 2pcj_A 83 KLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSEL 128 (224)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred cEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHc
Confidence 7999999999999999999999987777776666666666666553
No 7
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.89 E-value=1e-22 Score=200.55 Aligned_cols=120 Identities=20% Similarity=0.302 Sum_probs=102.9
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc------------
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY------------ 415 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~------------ 415 (474)
.++++||++.| +++++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus 6 ~l~i~~l~~~y-~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 84 (262)
T 1b0u_A 6 KLHVIDLHKRY-GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVAD 84 (262)
T ss_dssp CEEEEEEEEEE-TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESC
T ss_pred eEEEeeEEEEE-CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccC
Confidence 58999999999 56789999999999999999999999999999999999999999999999999851
Q ss_pred --chHHhhcceEEEcCCCCCCCCCCHHHHHHHHH-hcCCCCHHHHHHHHHHHHhHh
Q psy7411 416 --EMGKVRESLGLCPQYDLLFEELTVEDHLQFFA-KGKEFNGITYGRALLLMMSYV 468 (474)
Q Consensus 416 --~~~~ir~~IG~~~Q~~~L~~~LTV~E~L~~~~-~lkg~~~~~~~~~l~~~~~~~ 468 (474)
...+.|+.+||+||++.+++.+||+||+.+.. ..++.+.++..+++++++..+
T Consensus 85 ~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 140 (262)
T 1b0u_A 85 KNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKV 140 (262)
T ss_dssp HHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred hhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHc
Confidence 12345678999999999999999999999864 556666666666666666654
No 8
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.89 E-value=1.1e-22 Score=202.02 Aligned_cols=122 Identities=24% Similarity=0.353 Sum_probs=105.4
Q ss_pred ccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc---chHHhhcc
Q psy7411 347 SGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY---EMGKVRES 423 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~---~~~~ir~~ 423 (474)
..++++||++.|++++.+|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ...+.|+.
T Consensus 6 ~~l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ 85 (275)
T 3gfo_A 6 YILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRES 85 (275)
T ss_dssp EEEEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHS
T ss_pred cEEEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCc
Confidence 358999999999655579999999999999999999999999999999999999999999999999842 23456788
Q ss_pred eEEEcCCC-CCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhHh
Q psy7411 424 LGLCPQYD-LLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSYV 468 (474)
Q Consensus 424 IG~~~Q~~-~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~~ 468 (474)
+||+||++ ..+..+||+||+.+.....+.+.++..+++++.+..+
T Consensus 86 ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~ 131 (275)
T 3gfo_A 86 IGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRT 131 (275)
T ss_dssp EEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHT
T ss_pred EEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 99999986 2333689999999998888888888888888877654
No 9
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.89 E-value=9.9e-23 Score=209.26 Aligned_cols=122 Identities=25% Similarity=0.455 Sum_probs=107.4
Q ss_pred cccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceE
Q psy7411 346 ASGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLG 425 (474)
Q Consensus 346 ~~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG 425 (474)
...++++|++|.|++++++|+++||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++... ...++.+|
T Consensus 12 ~~~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~-~~~~r~ig 90 (355)
T 1z47_A 12 SMTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDL-PPQKRNVG 90 (355)
T ss_dssp CEEEEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTC-CGGGSSEE
T ss_pred CceEEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcC-ChhhCcEE
Confidence 45699999999993346799999999999999999999999999999999999999999999999998542 23467899
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhHh
Q psy7411 426 LCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSYV 468 (474)
Q Consensus 426 ~~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~~ 468 (474)
|+||+..+++.+||+||+.+..+.++.++++..+++++++..+
T Consensus 91 ~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~ 133 (355)
T 1z47_A 91 LVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFM 133 (355)
T ss_dssp EECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred EEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 9999999999999999999988888888777777788877654
No 10
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.88 E-value=1.7e-22 Score=208.04 Aligned_cols=119 Identities=24% Similarity=0.361 Sum_probs=106.0
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEEE
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLC 427 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~ 427 (474)
.++++|++|.| +++++++++||++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++.... ..++++||+
T Consensus 3 ~l~~~~l~~~y-~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~-~~~r~ig~v 80 (362)
T 2it1_A 3 EIKLENIVKKF-GNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELP-PKDRNVGLV 80 (362)
T ss_dssp CEEEEEEEEES-SSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC-GGGTTEEEE
T ss_pred EEEEEeEEEEE-CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCC-HhHCcEEEE
Confidence 37899999999 5678999999999999999999999999999999999999999999999999986422 235679999
Q ss_pred cCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhHh
Q psy7411 428 PQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSYV 468 (474)
Q Consensus 428 ~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~~ 468 (474)
||+..+++++||+||+.+..+.++.++++..+++++++..+
T Consensus 81 ~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~ 121 (362)
T 2it1_A 81 FQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKML 121 (362)
T ss_dssp CTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred ecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc
Confidence 99999999999999999988888888887777888877654
No 11
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.88 E-value=1.7e-22 Score=208.78 Aligned_cols=120 Identities=23% Similarity=0.383 Sum_probs=105.9
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcc-----hHHhhc
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYE-----MGKVRE 422 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~-----~~~ir~ 422 (474)
.++++|++|.| +++.+|+++||++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++... ....++
T Consensus 3 ~l~~~~l~~~y-~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r 81 (372)
T 1g29_1 3 GVRLVDVWKVF-GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDR 81 (372)
T ss_dssp EEEEEEEEEEE-TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGS
T ss_pred EEEEEeEEEEE-CCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHC
Confidence 47899999999 567899999999999999999999999999999999999999999999999998531 223357
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhHh
Q psy7411 423 SLGLCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSYV 468 (474)
Q Consensus 423 ~IG~~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~~ 468 (474)
++||+||+..+++++||+||+.+..+.++.++++..+++++++..+
T Consensus 82 ~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~ 127 (372)
T 1g29_1 82 DIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELL 127 (372)
T ss_dssp SEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHC
Confidence 7999999999999999999999988888888877777777777654
No 12
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.88 E-value=9.9e-23 Score=209.54 Aligned_cols=119 Identities=25% Similarity=0.393 Sum_probs=104.1
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEEE
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLC 427 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~ 427 (474)
.++++|++|.| +++.+|+++||++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++.... ..++++||+
T Consensus 3 ~l~~~~l~~~y-~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~-~~~r~ig~v 80 (359)
T 2yyz_A 3 SIRVVNLKKYF-GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIP-PKYREVGMV 80 (359)
T ss_dssp CEEEEEEEEEE-TTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC-GGGTTEEEE
T ss_pred EEEEEEEEEEE-CCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCC-hhhCcEEEE
Confidence 47899999999 5678999999999999999999999999999999999999999999999999986422 235679999
Q ss_pred cCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhHh
Q psy7411 428 PQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSYV 468 (474)
Q Consensus 428 ~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~~ 468 (474)
||+..+++++||+||+.+..+.++.++++..+++++++..+
T Consensus 81 ~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~ 121 (359)
T 2yyz_A 81 FQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKL 121 (359)
T ss_dssp CSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHT
T ss_pred ecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc
Confidence 99999999999999999987777776666666677776654
No 13
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.88 E-value=2.8e-22 Score=194.24 Aligned_cols=120 Identities=27% Similarity=0.381 Sum_probs=99.9
Q ss_pred EEEEeeEEEEcCC---ceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcc-h---HHh-
Q psy7411 349 IQLRGLTKIYKTG---KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYE-M---GKV- 420 (474)
Q Consensus 349 I~i~~Lsk~y~~~---~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~-~---~~i- 420 (474)
++++||++.|+++ +++|+++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++... . .+.
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHh
Confidence 6899999999532 4699999999999999999999999999999999999999999999999998632 1 122
Q ss_pred hcceEEEcCCCCCCCCCCHHHHHHHHHhcC---CCCHHHHHHHHHHHHhHh
Q psy7411 421 RESLGLCPQYDLLFEELTVEDHLQFFAKGK---EFNGITYGRALLLMMSYV 468 (474)
Q Consensus 421 r~~IG~~~Q~~~L~~~LTV~E~L~~~~~lk---g~~~~~~~~~l~~~~~~~ 468 (474)
|+.+||+||++.+++.+||+||+.+....+ +.+.++..+++.+++..+
T Consensus 82 ~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 132 (235)
T 3tif_A 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMA 132 (235)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHT
T ss_pred hccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHC
Confidence 346999999999999999999999876544 456666666666666543
No 14
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.88 E-value=1.8e-22 Score=208.57 Aligned_cols=119 Identities=28% Similarity=0.419 Sum_probs=98.2
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEEE
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLC 427 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~ 427 (474)
.++++|++|.| +++.+++++||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.... ..++++||+
T Consensus 11 ~l~~~~l~~~y-~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~-~~~r~ig~v 88 (372)
T 1v43_A 11 EVKLENLTKRF-GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLP-PKDRNISMV 88 (372)
T ss_dssp CEEEEEEEEEE-TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC-GGGGTEEEE
T ss_pred eEEEEEEEEEE-CCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCC-hhhCcEEEE
Confidence 48999999999 5678999999999999999999999999999999999999999999999999986422 235679999
Q ss_pred cCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhHh
Q psy7411 428 PQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSYV 468 (474)
Q Consensus 428 ~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~~ 468 (474)
||+..+|+++||+||+.+..+.++.++++..+++++++..+
T Consensus 89 ~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~ 129 (372)
T 1v43_A 89 FQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELL 129 (372)
T ss_dssp EC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHT
T ss_pred ecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc
Confidence 99999999999999999987777778777777788777654
No 15
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.88 E-value=1e-22 Score=208.91 Aligned_cols=120 Identities=22% Similarity=0.372 Sum_probs=105.6
Q ss_pred cEEEEeeEEEEcCCce--eeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcc----hHHhh
Q psy7411 348 GIQLRGLTKIYKTGKK--AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYE----MGKVR 421 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~--aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~----~~~ir 421 (474)
.++++|++|.| ++++ +++++||++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++... ....+
T Consensus 3 ~l~i~~l~~~y-~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~ 81 (353)
T 1oxx_K 3 RIIVKNVSKVF-KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPED 81 (353)
T ss_dssp CEEEEEEEEEE-GGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGG
T ss_pred EEEEEeEEEEE-CCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhh
Confidence 47899999999 4566 99999999999999999999999999999999999999999999999998531 33456
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhHh
Q psy7411 422 ESLGLCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSYV 468 (474)
Q Consensus 422 ~~IG~~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~~ 468 (474)
+++||+||+..+++++||+||+.+..+.++.++++..+++++++..+
T Consensus 82 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~ 128 (353)
T 1oxx_K 82 RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKIL 128 (353)
T ss_dssp SCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHT
T ss_pred CCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 78999999999999999999999987777878777777777777654
No 16
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.88 E-value=4.1e-22 Score=193.56 Aligned_cols=119 Identities=29% Similarity=0.418 Sum_probs=97.8
Q ss_pred ccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcc-hHH-hhcce
Q psy7411 347 SGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYE-MGK-VRESL 424 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~-~~~-ir~~I 424 (474)
+.++++|+++.| +++++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ..+ .++.+
T Consensus 5 ~~l~~~~l~~~y-~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 83 (240)
T 1ji0_A 5 IVLEVQSLHVYY-GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGI 83 (240)
T ss_dssp EEEEEEEEEEEE-TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTE
T ss_pred ceEEEEeEEEEE-CCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCE
Confidence 358999999999 457899999999999999999999999999999999999999999999999998642 222 34569
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhH
Q psy7411 425 GLCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSY 467 (474)
Q Consensus 425 G~~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~ 467 (474)
||+||++.+++.+||+||+.+... .+.+.++..+++++++..
T Consensus 84 ~~v~q~~~l~~~ltv~enl~~~~~-~~~~~~~~~~~~~~~l~~ 125 (240)
T 1ji0_A 84 ALVPEGRRIFPELTVYENLMMGAY-NRKDKEGIKRDLEWIFSL 125 (240)
T ss_dssp EEECSSCCCCTTSBHHHHHHGGGT-TCCCSSHHHHHHHHHHHH
T ss_pred EEEecCCccCCCCcHHHHHHHhhh-cCCCHHHHHHHHHHHHHH
Confidence 999999999999999999988642 222334445555555443
No 17
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.88 E-value=3e-22 Score=196.40 Aligned_cols=120 Identities=19% Similarity=0.307 Sum_probs=100.0
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcc--hHHhhcceE
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYE--MGKVRESLG 425 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~--~~~ir~~IG 425 (474)
.++++|+++.| +++++++++||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++... ....|+.+|
T Consensus 7 ~l~i~~l~~~y-~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 85 (257)
T 1g6h_A 7 ILRTENIVKYF-GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIV 85 (257)
T ss_dssp EEEEEEEEEEE-TTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEE
T ss_pred EEEEeeeEEEE-CCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEE
Confidence 58999999999 567899999999999999999999999999999999999999999999999998532 234567799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHhc--CC-----------CCHHHHHHHHHHHHhHh
Q psy7411 426 LCPQYDLLFEELTVEDHLQFFAKG--KE-----------FNGITYGRALLLMMSYV 468 (474)
Q Consensus 426 ~~~Q~~~L~~~LTV~E~L~~~~~l--kg-----------~~~~~~~~~l~~~~~~~ 468 (474)
|+||++.+++.+||+||+.+.... ++ .+.++..+++++++..+
T Consensus 86 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 141 (257)
T 1g6h_A 86 RTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL 141 (257)
T ss_dssp ECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHT
T ss_pred EEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHc
Confidence 999999999999999999986543 23 23344455566666543
No 18
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.87 E-value=7.1e-22 Score=189.39 Aligned_cols=99 Identities=23% Similarity=0.373 Sum_probs=90.6
Q ss_pred ccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEE
Q psy7411 347 SGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGL 426 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~ 426 (474)
..++++|+++.| ++ ++++++||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++. ..++.+||
T Consensus 9 ~~l~~~~ls~~y-~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~----~~~~~i~~ 82 (214)
T 1sgw_A 9 SKLEIRDLSVGY-DK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT----KVKGKIFF 82 (214)
T ss_dssp CEEEEEEEEEES-SS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG----GGGGGEEE
T ss_pred ceEEEEEEEEEe-CC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh----hhcCcEEE
Confidence 458999999999 45 8999999999999999999999999999999999999999999999999885 35678999
Q ss_pred EcCCCCCCCCCCHHHHHHHHHhcCC
Q psy7411 427 CPQYDLLFEELTVEDHLQFFAKGKE 451 (474)
Q Consensus 427 ~~Q~~~L~~~LTV~E~L~~~~~lkg 451 (474)
+||++.+++.+||+||+.+....++
T Consensus 83 v~q~~~~~~~~tv~enl~~~~~~~~ 107 (214)
T 1sgw_A 83 LPEEIIVPRKISVEDYLKAVASLYG 107 (214)
T ss_dssp ECSSCCCCTTSBHHHHHHHHHHHTT
T ss_pred EeCCCcCCCCCCHHHHHHHHHHhcC
Confidence 9999999999999999998765554
No 19
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.86 E-value=5.7e-22 Score=203.11 Aligned_cols=113 Identities=25% Similarity=0.451 Sum_probs=96.2
Q ss_pred EEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEEEc
Q psy7411 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCP 428 (474)
Q Consensus 349 I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~~ 428 (474)
++++|++|.| +++ +++++||++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++.. ....++++||+|
T Consensus 2 l~~~~l~~~y-~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~-~~~~~r~ig~v~ 78 (348)
T 3d31_A 2 IEIESLSRKW-KNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTD-LSPEKHDIAFVY 78 (348)
T ss_dssp EEEEEEEEEC-SSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTT-SCHHHHTCEEEC
T ss_pred EEEEEEEEEE-CCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCC-CchhhCcEEEEe
Confidence 6899999999 456 9999999999999999999999999999999999999999999999999864 223467899999
Q ss_pred CCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhH
Q psy7411 429 QYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSY 467 (474)
Q Consensus 429 Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~ 467 (474)
|+..+++++||+||+.+..+.++.+++ +++++++..
T Consensus 79 Q~~~l~~~ltv~enl~~~~~~~~~~~~---~~v~~~l~~ 114 (348)
T 3d31_A 79 QNYSLFPHMNVKKNLEFGMRMKKIKDP---KRVLDTARD 114 (348)
T ss_dssp TTCCCCTTSCHHHHHHHHHHHHCCCCH---HHHHHHHHH
T ss_pred cCcccCCCCCHHHHHHHHHHHcCCCHH---HHHHHHHHH
Confidence 999999999999999997766554433 344444443
No 20
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.86 E-value=1.3e-21 Score=193.09 Aligned_cols=118 Identities=20% Similarity=0.285 Sum_probs=98.9
Q ss_pred ccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chHHhhcceE
Q psy7411 347 SGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMGKVRESLG 425 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~~ir~~IG 425 (474)
..++++|+++.| +++++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ...+.++.+|
T Consensus 10 ~~l~~~~l~~~~-~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~ 88 (266)
T 4g1u_C 10 ALLEASHLHYHV-QQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRA 88 (266)
T ss_dssp CEEEEEEEEEEE-TTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEE
T ss_pred ceEEEEeEEEEe-CCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEE
Confidence 468999999999 56889999999999999999999999999999999999999999999999999874 3445667799
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhH
Q psy7411 426 LCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSY 467 (474)
Q Consensus 426 ~~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~ 467 (474)
+++|++.+++.+||+||+.+....++. ++..+++++.+..
T Consensus 89 ~v~q~~~~~~~~tv~e~l~~~~~~~~~--~~~~~~~~~~l~~ 128 (266)
T 4g1u_C 89 VMRQYSELAFPFSVSEVIQMGRAPYGG--SQDRQALQQVMAQ 128 (266)
T ss_dssp EECSCCCCCSCCBHHHHHHGGGTTSCS--TTHHHHHHHHHHH
T ss_pred EEecCCccCCCCCHHHHHHhhhhhcCc--HHHHHHHHHHHHH
Confidence 999999998889999999987654432 2333444444443
No 21
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.85 E-value=3.5e-21 Score=189.78 Aligned_cols=100 Identities=31% Similarity=0.492 Sum_probs=88.0
Q ss_pred cEEEEeeEEEEc-CC---ceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcc
Q psy7411 348 GIQLRGLTKIYK-TG---KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRES 423 (474)
Q Consensus 348 ~I~i~~Lsk~y~-~~---~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~ 423 (474)
.++++|+++.|+ ++ +.+++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... +.|+.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~--~~~~~ 79 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY--EIRRN 79 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH--HHGGG
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH--Hhhhh
Confidence 378999999995 24 5799999999999999999999999999999999999999999999999998643 56778
Q ss_pred eEEEcCCC-CCCCCCCHHHHHHHHHhc
Q psy7411 424 LGLCPQYD-LLFEELTVEDHLQFFAKG 449 (474)
Q Consensus 424 IG~~~Q~~-~L~~~LTV~E~L~~~~~l 449 (474)
+||+||++ .+++.+||+||+.+....
T Consensus 80 i~~v~q~~~~~~~~~tv~enl~~~~~~ 106 (266)
T 2yz2_A 80 IGIAFQYPEDQFFAERVFDEVAFAVKN 106 (266)
T ss_dssp EEEECSSGGGGCCCSSHHHHHHHTTTT
T ss_pred EEEEeccchhhcCCCcHHHHHHHHHHh
Confidence 99999985 456678999999986543
No 22
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.85 E-value=7.1e-21 Score=185.83 Aligned_cols=112 Identities=25% Similarity=0.424 Sum_probs=93.7
Q ss_pred ccEEEEeeEEEEc-CCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chHHhhcce
Q psy7411 347 SGIQLRGLTKIYK-TGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMGKVRESL 424 (474)
Q Consensus 347 ~~I~i~~Lsk~y~-~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~~ir~~I 424 (474)
..++++||++.|+ +++.+++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ...++|+.+
T Consensus 6 ~~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i 85 (247)
T 2ff7_A 6 HDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV 85 (247)
T ss_dssp EEEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred CceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcE
Confidence 4589999999993 34689999999999999999999999999999999999999999999999999864 344567789
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHH
Q psy7411 425 GLCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRAL 461 (474)
Q Consensus 425 G~~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l 461 (474)
||+||++.+++ .||+||+.+.. ...+.+++.+.+
T Consensus 86 ~~v~Q~~~l~~-~tv~enl~~~~--~~~~~~~~~~~l 119 (247)
T 2ff7_A 86 GVVLQDNVLLN-RSIIDNISLAN--PGMSVEKVIYAA 119 (247)
T ss_dssp EEECSSCCCTT-SBHHHHHTTTC--TTCCHHHHHHHH
T ss_pred EEEeCCCcccc-ccHHHHHhccC--CCCCHHHHHHHH
Confidence 99999999886 59999998752 223444444443
No 23
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.84 E-value=5.2e-21 Score=190.21 Aligned_cols=120 Identities=23% Similarity=0.178 Sum_probs=93.7
Q ss_pred ccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecC--c-chHHhhcc
Q psy7411 347 SGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIW--Y-EMGKVRES 423 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~--~-~~~~ir~~ 423 (474)
..++++||++.| +++++++++||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++. . ...+.|+.
T Consensus 20 ~~l~~~~l~~~y-~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 98 (279)
T 2ihy_A 20 MLIQLDQIGRMK-QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQH 98 (279)
T ss_dssp EEEEEEEEEEEE-TTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTT
T ss_pred ceEEEEeEEEEE-CCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCc
Confidence 358999999999 5578999999999999999999999999999999999999999999999999885 2 34456778
Q ss_pred eEEEcCCCCC--CCCCCHHHHHHHHHh----cCCCCHHHHHHHHHHHHhH
Q psy7411 424 LGLCPQYDLL--FEELTVEDHLQFFAK----GKEFNGITYGRALLLMMSY 467 (474)
Q Consensus 424 IG~~~Q~~~L--~~~LTV~E~L~~~~~----lkg~~~~~~~~~l~~~~~~ 467 (474)
+||+||++.+ .+.+||+||+.+... ..+...++..+++++++..
T Consensus 99 i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 148 (279)
T 2ihy_A 99 IGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKL 148 (279)
T ss_dssp EEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHH
T ss_pred EEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHH
Confidence 9999998654 345799999987421 1222233334455555543
No 24
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.84 E-value=5.9e-21 Score=185.81 Aligned_cols=112 Identities=26% Similarity=0.345 Sum_probs=92.8
Q ss_pred EEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEEEc
Q psy7411 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCP 428 (474)
Q Consensus 349 I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~~ 428 (474)
++++|+++.| ++ +++++||++++ |+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ....++++||+|
T Consensus 2 l~~~~l~~~y-~~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~i~~v~ 76 (240)
T 2onk_A 2 FLKVRAEKRL-GN--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITP-LPPERRGIGFVP 76 (240)
T ss_dssp CEEEEEEEEE-TT--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTT-SCTTTSCCBCCC
T ss_pred EEEEEEEEEe-CC--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCc-CchhhCcEEEEc
Confidence 6799999999 43 59999999999 9999999999999999999999999999999999999853 223467799999
Q ss_pred CCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHhH
Q psy7411 429 QYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSY 467 (474)
Q Consensus 429 Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~~ 467 (474)
|++.+++.+||+||+.+....++.+. ..+++++++..
T Consensus 77 q~~~l~~~ltv~enl~~~~~~~~~~~--~~~~~~~~l~~ 113 (240)
T 2onk_A 77 QDYALFPHLSVYRNIAYGLRNVERVE--RDRRVREMAEK 113 (240)
T ss_dssp SSCCCCTTSCHHHHHHTTCTTSCHHH--HHHHHHHHHHT
T ss_pred CCCccCCCCcHHHHHHHHHHHcCCch--HHHHHHHHHHH
Confidence 99999999999999998655444222 14445555543
No 25
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.83 E-value=1.4e-20 Score=189.59 Aligned_cols=113 Identities=26% Similarity=0.426 Sum_probs=96.3
Q ss_pred ccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chHHhhcceE
Q psy7411 347 SGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMGKVRESLG 425 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~~ir~~IG 425 (474)
..++++||++.|++++++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ...++|+.+|
T Consensus 52 ~~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~ 131 (306)
T 3nh6_A 52 GRIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIG 131 (306)
T ss_dssp CCEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEE
T ss_pred CeEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceE
Confidence 358999999999656789999999999999999999999999999999999999999999999999974 4566788999
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHH
Q psy7411 426 LCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALL 462 (474)
Q Consensus 426 ~~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~ 462 (474)
|+||++.+|+. ||+||+.+.... ...+++.++++
T Consensus 132 ~v~Q~~~lf~~-Tv~eNi~~~~~~--~~~~~~~~~~~ 165 (306)
T 3nh6_A 132 VVPQDTVLFND-TIADNIRYGRVT--AGNDEVEAAAQ 165 (306)
T ss_dssp EECSSCCCCSE-EHHHHHHTTSTT--CCHHHHHHHHH
T ss_pred EEecCCccCcc-cHHHHHHhhccc--CCHHHHHHHHH
Confidence 99999999964 999999875432 23444444433
No 26
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.83 E-value=2.8e-20 Score=181.70 Aligned_cols=120 Identities=22% Similarity=0.308 Sum_probs=96.1
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCC--CCCCeeEEEECCeecCcc-hHH-hhcc
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGL--IIPTSGTAYIDGHDIWYE-MGK-VRES 423 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL--~~PtsG~i~i~G~dI~~~-~~~-ir~~ 423 (474)
.++++|+++.| +++++++++||++++||+++|+||||||||||+++|+|+ ++|++|+|.++|+++... ..+ .++.
T Consensus 3 ~l~~~~l~~~y-~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (250)
T 2d2e_A 3 QLEIRDLWASI-DGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKG 81 (250)
T ss_dssp EEEEEEEEEEE-TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTT
T ss_pred eEEEEeEEEEE-CCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCc
Confidence 47899999999 557899999999999999999999999999999999998 789999999999998642 222 2456
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHHHh-cCC--CCHHHHHHHHHHHHhHh
Q psy7411 424 LGLCPQYDLLFEELTVEDHLQFFAK-GKE--FNGITYGRALLLMMSYV 468 (474)
Q Consensus 424 IG~~~Q~~~L~~~LTV~E~L~~~~~-lkg--~~~~~~~~~l~~~~~~~ 468 (474)
++|+||++.+++.+||+||+.+... ..+ .+.++..+++++++..+
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 129 (250)
T 2d2e_A 82 LFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELL 129 (250)
T ss_dssp BCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHH
T ss_pred EEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHc
Confidence 9999999999999999999987642 222 23344445556555543
No 27
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.83 E-value=6.2e-21 Score=185.43 Aligned_cols=112 Identities=22% Similarity=0.385 Sum_probs=92.1
Q ss_pred EEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chHHhhcceEEE
Q psy7411 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMGKVRESLGLC 427 (474)
Q Consensus 349 I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~~ir~~IG~~ 427 (474)
++++|+++.|++++.+++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ...+.|+.+||+
T Consensus 2 l~~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v 81 (243)
T 1mv5_A 2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFV 81 (243)
T ss_dssp EEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEE
T ss_pred EEEEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEE
Confidence 6899999999434679999999999999999999999999999999999999999999999999853 223457789999
Q ss_pred cCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHH
Q psy7411 428 PQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALL 462 (474)
Q Consensus 428 ~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~ 462 (474)
||++.+++ .||+||+.+... .+...+++.+.++
T Consensus 82 ~q~~~l~~-~tv~enl~~~~~-~~~~~~~~~~~l~ 114 (243)
T 1mv5_A 82 SQDSAIMA-GTIRENLTYGLE-GDYTDEDLWQVLD 114 (243)
T ss_dssp CCSSCCCC-EEHHHHTTSCTT-SCSCHHHHHHHHH
T ss_pred cCCCcccc-ccHHHHHhhhcc-CCCCHHHHHHHHH
Confidence 99999887 499999987522 2234444444433
No 28
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.82 E-value=6.4e-20 Score=180.98 Aligned_cols=121 Identities=20% Similarity=0.266 Sum_probs=97.3
Q ss_pred ccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCC--CCCCeeEEEECCeecCcc-hHHh-hc
Q psy7411 347 SGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGL--IIPTSGTAYIDGHDIWYE-MGKV-RE 422 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL--~~PtsG~i~i~G~dI~~~-~~~i-r~ 422 (474)
..++++||++.| +++++++++||++++||+++|+||||||||||+++|+|+ .+|++|+|.++|+++... .... ++
T Consensus 19 ~~l~~~~l~~~y-~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~ 97 (267)
T 2zu0_C 19 HMLSIKDLHVSV-EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGE 97 (267)
T ss_dssp -CEEEEEEEEEE-TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHH
T ss_pred ceEEEEeEEEEE-CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhC
Confidence 358999999999 567899999999999999999999999999999999999 479999999999998642 2222 44
Q ss_pred ceEEEcCCCCCCCCCCHHHHHHHHHh-c---C---CCCHHHHHHHHHHHHhHh
Q psy7411 423 SLGLCPQYDLLFEELTVEDHLQFFAK-G---K---EFNGITYGRALLLMMSYV 468 (474)
Q Consensus 423 ~IG~~~Q~~~L~~~LTV~E~L~~~~~-l---k---g~~~~~~~~~l~~~~~~~ 468 (474)
.+||++|++.+++.+|+.||+.+... . . +.+.++..+++++++..+
T Consensus 98 ~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 150 (267)
T 2zu0_C 98 GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALL 150 (267)
T ss_dssp TEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHT
T ss_pred CEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHc
Confidence 69999999999999999999987431 1 1 234455556666666543
No 29
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.82 E-value=3.5e-20 Score=183.29 Aligned_cols=99 Identities=24% Similarity=0.455 Sum_probs=88.4
Q ss_pred cEEEEeeEEEEcC--CceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chHHhhcce
Q psy7411 348 GIQLRGLTKIYKT--GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMGKVRESL 424 (474)
Q Consensus 348 ~I~i~~Lsk~y~~--~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~~ir~~I 424 (474)
.++++||++.|++ .+++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .....|+.+
T Consensus 16 ~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 95 (271)
T 2ixe_A 16 LVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQV 95 (271)
T ss_dssp CEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHE
T ss_pred eEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccE
Confidence 5899999999953 2679999999999999999999999999999999999999999999999999864 334567789
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHH
Q psy7411 425 GLCPQYDLLFEELTVEDHLQFFA 447 (474)
Q Consensus 425 G~~~Q~~~L~~~LTV~E~L~~~~ 447 (474)
||+||++.+++ .||+||+.+..
T Consensus 96 ~~v~Q~~~l~~-~tv~enl~~~~ 117 (271)
T 2ixe_A 96 AAVGQEPLLFG-RSFRENIAYGL 117 (271)
T ss_dssp EEECSSCCCCS-SBHHHHHHTTC
T ss_pred EEEecCCcccc-ccHHHHHhhhc
Confidence 99999999887 59999998854
No 30
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.81 E-value=9.5e-20 Score=179.71 Aligned_cols=108 Identities=23% Similarity=0.403 Sum_probs=90.4
Q ss_pred EEEEeeEEEEcCC---ceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceE
Q psy7411 349 IQLRGLTKIYKTG---KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLG 425 (474)
Q Consensus 349 I~i~~Lsk~y~~~---~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG 425 (474)
++++|+++.|++. +.+++++||+++ ||+++|+||||||||||+++|+|+. |++|+|.++|+++... .. |+++|
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~-~~-~~~i~ 77 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI-RN-YIRYS 77 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC-SC-CTTEE
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch-HH-hhheE
Confidence 6899999999431 679999999999 9999999999999999999999999 9999999999998643 33 67899
Q ss_pred -EEcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHH
Q psy7411 426 -LCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALL 462 (474)
Q Consensus 426 -~~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~ 462 (474)
|+||++.+ .+||+||+.++...++...+++.+.++
T Consensus 78 ~~v~Q~~~l--~~tv~enl~~~~~~~~~~~~~~~~~l~ 113 (263)
T 2pjz_A 78 TNLPEAYEI--GVTVNDIVYLYEELKGLDRDLFLEMLK 113 (263)
T ss_dssp ECCGGGSCT--TSBHHHHHHHHHHHTCCCHHHHHHHHH
T ss_pred EEeCCCCcc--CCcHHHHHHHhhhhcchHHHHHHHHHH
Confidence 99999887 789999999976655444444444433
No 31
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.81 E-value=2.1e-19 Score=176.05 Aligned_cols=88 Identities=27% Similarity=0.412 Sum_probs=80.8
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEEE
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLC 427 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~ 427 (474)
.++++|+++.|++++++++++||++++||+++|+||||||||||+++|+|+++|++|+|. .++.+||+
T Consensus 4 ~l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~------------~~~~i~~v 71 (253)
T 2nq2_C 4 ALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE------------VYQSIGFV 71 (253)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE------------ECSCEEEE
T ss_pred eEEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE------------EeccEEEE
Confidence 489999999994157899999999999999999999999999999999999999999998 24679999
Q ss_pred cCCCCCCCCCCHHHHHHHHH
Q psy7411 428 PQYDLLFEELTVEDHLQFFA 447 (474)
Q Consensus 428 ~Q~~~L~~~LTV~E~L~~~~ 447 (474)
||++.+++.+||+||+.+..
T Consensus 72 ~q~~~~~~~~tv~enl~~~~ 91 (253)
T 2nq2_C 72 PQFFSSPFAYSVLDIVLMGR 91 (253)
T ss_dssp CSCCCCSSCCBHHHHHHGGG
T ss_pred cCCCccCCCCCHHHHHHHhh
Confidence 99999998999999999864
No 32
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.80 E-value=2.1e-19 Score=176.65 Aligned_cols=98 Identities=21% Similarity=0.401 Sum_probs=86.7
Q ss_pred ccEEEEeeEEEEcCC--ceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chHHhhcc
Q psy7411 347 SGIQLRGLTKIYKTG--KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMGKVRES 423 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~~--~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~~ir~~ 423 (474)
..++++|+++.|++. +++++++||++++||+++|+||||||||||+++|+|+++| +|+|.++|+++.. ...++|+.
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 358999999999532 4699999999999999999999999999999999999987 8999999999864 34456788
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHH
Q psy7411 424 LGLCPQYDLLFEELTVEDHLQFF 446 (474)
Q Consensus 424 IG~~~Q~~~L~~~LTV~E~L~~~ 446 (474)
+||+||++.+++ .||+||+.+.
T Consensus 95 i~~v~Q~~~l~~-~tv~enl~~~ 116 (260)
T 2ghi_A 95 IGIVPQDTILFN-ETIKYNILYG 116 (260)
T ss_dssp EEEECSSCCCCS-EEHHHHHHTT
T ss_pred EEEEcCCCcccc-cCHHHHHhcc
Confidence 999999999986 5999999874
No 33
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.80 E-value=2e-19 Score=175.99 Aligned_cols=93 Identities=22% Similarity=0.230 Sum_probs=84.1
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chHHhhcceEE
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMGKVRESLGL 426 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~~ir~~IG~ 426 (474)
.++++|+++. ++++++||++++||+++|+||||||||||+++|+|+++|+ |+|.++|+++.. ...+.|+.+||
T Consensus 4 ~l~~~~l~~~-----~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~ 77 (249)
T 2qi9_C 4 VMQLQDVAES-----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAY 77 (249)
T ss_dssp EEEEEEEEET-----TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEE
T ss_pred EEEEEceEEE-----EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEE
Confidence 4789999875 5899999999999999999999999999999999999999 999999999853 34456778999
Q ss_pred EcCCCCCCCCCCHHHHHHHH
Q psy7411 427 CPQYDLLFEELTVEDHLQFF 446 (474)
Q Consensus 427 ~~Q~~~L~~~LTV~E~L~~~ 446 (474)
+||++.+++.+||+||+.+.
T Consensus 78 v~q~~~~~~~~tv~e~l~~~ 97 (249)
T 2qi9_C 78 LSQQQTPPFATPVWHYLTLH 97 (249)
T ss_dssp ECSCCCCCTTCBHHHHHHTT
T ss_pred ECCCCccCCCCcHHHHHHHh
Confidence 99999999999999999875
No 34
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.79 E-value=1.8e-19 Score=187.10 Aligned_cols=111 Identities=26% Similarity=0.360 Sum_probs=92.8
Q ss_pred ccEEEEeeEEEEc-CCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chHHhhcce
Q psy7411 347 SGIQLRGLTKIYK-TGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMGKVRESL 424 (474)
Q Consensus 347 ~~I~i~~Lsk~y~-~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~~ir~~I 424 (474)
..++++||+|.|+ +++.+|+++||++++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++.. ...+.|+.+
T Consensus 18 ~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~i 96 (390)
T 3gd7_A 18 GQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKAF 96 (390)
T ss_dssp CCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHTE
T ss_pred CeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCCE
Confidence 3589999999995 34689999999999999999999999999999999999998 99999999999864 345567889
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHH
Q psy7411 425 GLCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALL 462 (474)
Q Consensus 425 G~~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~ 462 (474)
||+||++.+|+ +||+||+.++. ...++++.+.++
T Consensus 97 g~v~Q~~~lf~-~tv~enl~~~~---~~~~~~v~~~l~ 130 (390)
T 3gd7_A 97 GVIPQKVFIFS-GTFRKNLDPNA---AHSDQEIWKVAD 130 (390)
T ss_dssp EEESCCCCCCS-EEHHHHHCTTC---CSCHHHHHHHHH
T ss_pred EEEcCCcccCc-cCHHHHhhhcc---ccCHHHHHHHHH
Confidence 99999999997 59999997432 234444444443
No 35
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.78 E-value=7.5e-19 Score=191.00 Aligned_cols=113 Identities=26% Similarity=0.421 Sum_probs=96.2
Q ss_pred EEEEeeEEEEcCC--ceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chHHhhcceE
Q psy7411 349 IQLRGLTKIYKTG--KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMGKVRESLG 425 (474)
Q Consensus 349 I~i~~Lsk~y~~~--~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~~ir~~IG 425 (474)
++++|+++.|++. +++++|+||++++||+++++||||||||||+++|+|+++|++|+|.++|+++.. ..++.|+++|
T Consensus 342 i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 421 (595)
T 2yl4_A 342 LEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIG 421 (595)
T ss_dssp EEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEE
T ss_pred EEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceE
Confidence 8999999999532 479999999999999999999999999999999999999999999999999974 4556788899
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHhc-CCCCHHHHHHHHH
Q psy7411 426 LCPQYDLLFEELTVEDHLQFFAKG-KEFNGITYGRALL 462 (474)
Q Consensus 426 ~~~Q~~~L~~~LTV~E~L~~~~~l-kg~~~~~~~~~l~ 462 (474)
++||++.+++. |++||+.+.... ++.+++++++.++
T Consensus 422 ~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~ 458 (595)
T 2yl4_A 422 TVSQEPILFSC-SIAENIAYGADDPSSVTAEEIQRVAE 458 (595)
T ss_dssp EECSSCCCCSS-BHHHHHHTTSSSTTTSCHHHHHHHHH
T ss_pred EEccCCcccCC-CHHHHHhhcCCCccccCHHHHHHHHH
Confidence 99999999975 999999986432 1245555555544
No 36
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.78 E-value=5.5e-19 Score=191.59 Aligned_cols=114 Identities=25% Similarity=0.431 Sum_probs=97.0
Q ss_pred ccEEEEeeEEEEcCC-ceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chHHhhcce
Q psy7411 347 SGIQLRGLTKIYKTG-KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMGKVRESL 424 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~~-~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~~ir~~I 424 (474)
..++++|+++.|+++ +++++|+||++++||+++++||||||||||+++|+|+++|++|+|.++|+++.. ..++.|+++
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i 419 (582)
T 3b60_A 340 GDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQV 419 (582)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTE
T ss_pred CcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhC
Confidence 358999999999533 679999999999999999999999999999999999999999999999999964 456678889
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHH
Q psy7411 425 GLCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALL 462 (474)
Q Consensus 425 G~~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~ 462 (474)
||+||++.+++. |++||+.+... .+.+++++++.++
T Consensus 420 ~~v~Q~~~l~~~-tv~eni~~~~~-~~~~~~~~~~~l~ 455 (582)
T 3b60_A 420 ALVSQNVHLFND-TVANNIAYART-EEYSREQIEEAAR 455 (582)
T ss_dssp EEECSSCCCCSS-BHHHHHHTTTT-SCCCHHHHHHHHH
T ss_pred eEEccCCcCCCC-CHHHHHhccCC-CCCCHHHHHHHHH
Confidence 999999999985 99999998531 2345555555443
No 37
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.78 E-value=4.6e-19 Score=192.15 Aligned_cols=114 Identities=25% Similarity=0.450 Sum_probs=96.8
Q ss_pred ccEEEEeeEEEEcCC-ceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chHHhhcce
Q psy7411 347 SGIQLRGLTKIYKTG-KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMGKVRESL 424 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~~-~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~~ir~~I 424 (474)
..++++|+++.|+++ +++++|+||++++||+++++||||||||||+++|+|+++|++|+|.++|+++.. ..++.|+++
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i 419 (582)
T 3b5x_A 340 GEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHF 419 (582)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCe
Confidence 358999999999532 679999999999999999999999999999999999999999999999999864 455678889
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHH
Q psy7411 425 GLCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALL 462 (474)
Q Consensus 425 G~~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~ 462 (474)
||+||++.+++. |++||+.+... .+.+++++++.++
T Consensus 420 ~~v~Q~~~l~~~-tv~eni~~~~~-~~~~~~~~~~~~~ 455 (582)
T 3b5x_A 420 ALVSQNVHLFND-TIANNIAYAAE-GEYTREQIEQAAR 455 (582)
T ss_pred EEEcCCCccccc-cHHHHHhccCC-CCCCHHHHHHHHH
Confidence 999999999985 99999998531 2344555555544
No 38
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.77 E-value=9.5e-19 Score=189.65 Aligned_cols=113 Identities=24% Similarity=0.390 Sum_probs=96.4
Q ss_pred ccEEEEeeEEEEcC-CceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chHHhhcce
Q psy7411 347 SGIQLRGLTKIYKT-GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMGKVRESL 424 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~-~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~~ir~~I 424 (474)
..++++|++++|++ ++++++|+||++++||+++++||||||||||+++|+|+++|++|+|.++|+++.. ..++.|+++
T Consensus 338 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i 417 (578)
T 4a82_A 338 GRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQI 417 (578)
T ss_dssp CCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTE
T ss_pred CeEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence 35899999999964 3579999999999999999999999999999999999999999999999999974 456678899
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHH
Q psy7411 425 GLCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALL 462 (474)
Q Consensus 425 G~~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~ 462 (474)
|||||++.+++. ||+||+.+.. ...+.+++.++++
T Consensus 418 ~~v~Q~~~l~~~-tv~eni~~~~--~~~~~~~~~~~~~ 452 (578)
T 4a82_A 418 GLVQQDNILFSD-TVKENILLGR--PTATDEEVVEAAK 452 (578)
T ss_dssp EEECSSCCCCSS-BHHHHHGGGC--SSCCHHHHHHHHH
T ss_pred EEEeCCCccCcc-cHHHHHhcCC--CCCCHHHHHHHHH
Confidence 999999999987 9999998753 2234455555443
No 39
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.77 E-value=8.3e-19 Score=169.09 Aligned_cols=86 Identities=20% Similarity=0.523 Sum_probs=79.7
Q ss_pred cEEEEeeEEEEc-CCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEE
Q psy7411 348 GIQLRGLTKIYK-TGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGL 426 (474)
Q Consensus 348 ~I~i~~Lsk~y~-~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~ 426 (474)
.++++|+++.|+ +++++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++| .+||
T Consensus 6 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g------------~i~~ 73 (229)
T 2pze_A 6 EVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------RISF 73 (229)
T ss_dssp EEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS------------CEEE
T ss_pred eEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC------------EEEE
Confidence 589999999995 246799999999999999999999999999999999999999999999998 3899
Q ss_pred EcCCCCCCCCCCHHHHHHHH
Q psy7411 427 CPQYDLLFEELTVEDHLQFF 446 (474)
Q Consensus 427 ~~Q~~~L~~~LTV~E~L~~~ 446 (474)
+||++.+++. ||+||+.+.
T Consensus 74 v~q~~~~~~~-tv~enl~~~ 92 (229)
T 2pze_A 74 CSQFSWIMPG-TIKENIIFG 92 (229)
T ss_dssp ECSSCCCCSB-CHHHHHHTT
T ss_pred EecCCcccCC-CHHHHhhcc
Confidence 9999999886 999999874
No 40
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.76 E-value=6.4e-19 Score=191.82 Aligned_cols=112 Identities=24% Similarity=0.384 Sum_probs=95.8
Q ss_pred ccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chHHhhcceE
Q psy7411 347 SGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMGKVRESLG 425 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~~ir~~IG 425 (474)
..++++|+++.|++++++++|+||++++||+++++||||||||||+++|+|+++|++|+|.++|+++.. ..++.|+++|
T Consensus 353 ~~i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~ 432 (598)
T 3qf4_B 353 GEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIG 432 (598)
T ss_dssp CCEEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEE
T ss_pred CeEEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceE
Confidence 358999999999655679999999999999999999999999999999999999999999999999974 4567788999
Q ss_pred EEcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHH
Q psy7411 426 LCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRAL 461 (474)
Q Consensus 426 ~~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l 461 (474)
++||++.+++. |++||+.+.. .+.+.+++.+++
T Consensus 433 ~v~Q~~~lf~~-tv~eni~~~~--~~~~~~~~~~~~ 465 (598)
T 3qf4_B 433 IVLQDTILFST-TVKENLKYGN--PGATDEEIKEAA 465 (598)
T ss_dssp EECTTCCCCSS-BHHHHHHSSS--TTCCTTHHHHHT
T ss_pred EEeCCCccccc-cHHHHHhcCC--CCCCHHHHHHHH
Confidence 99999999975 9999998752 223444444443
No 41
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.76 E-value=8.2e-19 Score=170.07 Aligned_cols=87 Identities=21% Similarity=0.382 Sum_probs=79.1
Q ss_pred cEEEEeeEEEEcC-CceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEE
Q psy7411 348 GIQLRGLTKIYKT-GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGL 426 (474)
Q Consensus 348 ~I~i~~Lsk~y~~-~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~ 426 (474)
.++++|+++.|++ ++++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++| .+||
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g------------~i~~ 70 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG------------SVAY 70 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS------------CEEE
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC------------EEEE
Confidence 4789999999953 46899999999999999999999999999999999999999999999998 3899
Q ss_pred EcCCCCCCCCCCHHHHHHHHH
Q psy7411 427 CPQYDLLFEELTVEDHLQFFA 447 (474)
Q Consensus 427 ~~Q~~~L~~~LTV~E~L~~~~ 447 (474)
+||++.+ +.+||+||+.+..
T Consensus 71 v~Q~~~~-~~~tv~enl~~~~ 90 (237)
T 2cbz_A 71 VPQQAWI-QNDSLRENILFGC 90 (237)
T ss_dssp ECSSCCC-CSEEHHHHHHTTS
T ss_pred EcCCCcC-CCcCHHHHhhCcc
Confidence 9999875 4789999998754
No 42
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.75 E-value=1.9e-18 Score=187.71 Aligned_cols=112 Identities=21% Similarity=0.378 Sum_probs=95.3
Q ss_pred ccEEEEeeEEEEc-CCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chHHhhcce
Q psy7411 347 SGIQLRGLTKIYK-TGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMGKVRESL 424 (474)
Q Consensus 347 ~~I~i~~Lsk~y~-~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~~ir~~I 424 (474)
..++++|++++|+ +.+++++|+||++++||+++++||||||||||+++|+|+++|++|+|.++|+++.. ..++.|+++
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i 419 (587)
T 3qf4_A 340 GSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHI 419 (587)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHE
T ss_pred CcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhhe
Confidence 3589999999995 34679999999999999999999999999999999999999999999999999974 456678899
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHH
Q psy7411 425 GLCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRAL 461 (474)
Q Consensus 425 G~~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l 461 (474)
||+||++.+++. |++||+.+... ..+.+++.+++
T Consensus 420 ~~v~Q~~~lf~~-tv~eni~~~~~--~~~~~~~~~~~ 453 (587)
T 3qf4_A 420 SAVPQETVLFSG-TIKENLKWGRE--DATDDEIVEAA 453 (587)
T ss_dssp EEECSSCCCCSE-EHHHHHTTTCS--SCCHHHHHHHH
T ss_pred EEECCCCcCcCc-cHHHHHhccCC--CCCHHHHHHHH
Confidence 999999999976 99999986432 23444444443
No 43
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.73 E-value=8.7e-18 Score=197.54 Aligned_cols=115 Identities=19% Similarity=0.314 Sum_probs=101.3
Q ss_pred cEEEEeeEEEEcC--CceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chHHhhcce
Q psy7411 348 GIQLRGLTKIYKT--GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMGKVRESL 424 (474)
Q Consensus 348 ~I~i~~Lsk~y~~--~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~~ir~~I 424 (474)
.++++|++.+|++ ..++|+|+||++++||.+|++||||||||||+++|.|+++|++|+|.++|.|+.+ ..+.+|+++
T Consensus 1076 ~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i 1155 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQI 1155 (1321)
T ss_dssp CEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTE
T ss_pred eEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhhe
Confidence 5999999999953 3469999999999999999999999999999999999999999999999999985 677899999
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy7411 425 GLCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLL 463 (474)
Q Consensus 425 G~~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~ 463 (474)
++|||++.||+. |++|||.+...-...+.+++.++++.
T Consensus 1156 ~~V~Qdp~LF~g-TIreNI~~gld~~~~sd~ei~~Al~~ 1193 (1321)
T 4f4c_A 1156 AIVSQEPTLFDC-SIAENIIYGLDPSSVTMAQVEEAARL 1193 (1321)
T ss_dssp EEECSSCCCCSE-EHHHHHSSSSCTTTSCHHHHHHHHHH
T ss_pred EEECCCCEeeCc-cHHHHHhccCCCCCCCHHHHHHHHHH
Confidence 999999999987 99999987533344567777777653
No 44
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.69 E-value=6.8e-17 Score=189.53 Aligned_cols=113 Identities=25% Similarity=0.446 Sum_probs=97.3
Q ss_pred ccEEEEeeEEEEcC--CceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chHHhhcc
Q psy7411 347 SGIQLRGLTKIYKT--GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMGKVRES 423 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~--~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~~ir~~ 423 (474)
..++++|++++|++ .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+.+|++
T Consensus 386 g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~ 465 (1284)
T 3g5u_A 386 GNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREI 465 (1284)
T ss_dssp CCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHH
T ss_pred CeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhh
Confidence 35899999999953 2479999999999999999999999999999999999999999999999999974 56678889
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHH
Q psy7411 424 LGLCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALL 462 (474)
Q Consensus 424 IG~~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~ 462 (474)
+|+|||++.+++. |++||+.+... ..+.+++.++++
T Consensus 466 i~~v~Q~~~l~~~-ti~eNi~~g~~--~~~~~~~~~~~~ 501 (1284)
T 3g5u_A 466 IGVVSQEPVLFAT-TIAENIRYGRE--DVTMDEIEKAVK 501 (1284)
T ss_dssp EEEECSSCCCCSS-CHHHHHHHHCS--SCCHHHHHHHHH
T ss_pred eEEEcCCCccCCc-cHHHHHhcCCC--CCCHHHHHHHHH
Confidence 9999999999987 99999998642 344555555543
No 45
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.67 E-value=1.5e-16 Score=187.05 Aligned_cols=114 Identities=22% Similarity=0.312 Sum_probs=100.0
Q ss_pred ccEEEEeeEEEEcC--CceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chHHhhcc
Q psy7411 347 SGIQLRGLTKIYKT--GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMGKVRES 423 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~--~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~~ir~~ 423 (474)
..++++|++++|++ ++++|+|+||++++||.++++||+||||||++++|.|+++|++|+|.++|.|++. +.+.+|++
T Consensus 414 g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~ 493 (1321)
T 4f4c_A 414 GDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKN 493 (1321)
T ss_dssp CCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHH
T ss_pred CcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhc
Confidence 35999999999953 4579999999999999999999999999999999999999999999999999985 66778999
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy7411 424 LGLCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLL 463 (474)
Q Consensus 424 IG~~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~ 463 (474)
+|||+|++.||+. |++|||.+.. ...+.+++.++++.
T Consensus 494 i~~v~Q~~~Lf~~-TI~eNI~~g~--~~~~~~~v~~a~~~ 530 (1321)
T 4f4c_A 494 VAVVSQEPALFNC-TIEENISLGK--EGITREEMVAACKM 530 (1321)
T ss_dssp EEEECSSCCCCSE-EHHHHHHTTC--TTCCHHHHHHHHHH
T ss_pred ccccCCcceeeCC-chhHHHhhhc--ccchHHHHHHHHHH
Confidence 9999999999987 9999998753 23466666666554
No 46
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.66 E-value=7.2e-17 Score=189.35 Aligned_cols=116 Identities=24% Similarity=0.428 Sum_probs=99.6
Q ss_pred ccEEEEeeEEEEcCC--ceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chHHhhcc
Q psy7411 347 SGIQLRGLTKIYKTG--KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMGKVRES 423 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~~--~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~~ir~~ 423 (474)
..++++|+++.|++. .++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|+++.. ..+.+|++
T Consensus 1029 g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~ 1108 (1284)
T 3g5u_A 1029 GNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQ 1108 (1284)
T ss_dssp CCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTS
T ss_pred CcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhc
Confidence 358999999999532 369999999999999999999999999999999999999999999999999974 45678889
Q ss_pred eEEEcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy7411 424 LGLCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLL 463 (474)
Q Consensus 424 IG~~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~ 463 (474)
+|++||++.+++ .|++||+.+.......+.+++.++++.
T Consensus 1109 i~~v~Q~~~l~~-~ti~eNi~~~~~~~~~~~~~i~~~~~~ 1147 (1284)
T 3g5u_A 1109 LGIVSQEPILFD-CSIAENIAYGDNSRVVSYEEIVRAAKE 1147 (1284)
T ss_dssp CEEEESSCCCCS-SBHHHHHTCCCSSCCCCHHHHHHHHHH
T ss_pred eEEECCCCcccc-ccHHHHHhccCCCCCCCHHHHHHHHHH
Confidence 999999999886 599999988655445566666666554
No 47
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.65 E-value=9.3e-17 Score=160.50 Aligned_cols=82 Identities=17% Similarity=0.459 Sum_probs=66.8
Q ss_pred ccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEE
Q psy7411 347 SGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGL 426 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~ 426 (474)
..++++|+++.+ +++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++| ++||
T Consensus 39 ~~l~~~~l~~~~---~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g------------~i~~ 103 (290)
T 2bbs_A 39 DSLSFSNFSLLG---TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------RISF 103 (290)
T ss_dssp -----------C---CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS------------CEEE
T ss_pred ceEEEEEEEEcC---ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC------------EEEE
Confidence 358899999853 5799999999999999999999999999999999999999999999987 3899
Q ss_pred EcCCCCCCCCCCHHHHHH
Q psy7411 427 CPQYDLLFEELTVEDHLQ 444 (474)
Q Consensus 427 ~~Q~~~L~~~LTV~E~L~ 444 (474)
+||++.+++. ||+||+.
T Consensus 104 v~Q~~~l~~~-tv~enl~ 120 (290)
T 2bbs_A 104 CSQNSWIMPG-TIKENII 120 (290)
T ss_dssp ECSSCCCCSS-BHHHHHH
T ss_pred EeCCCccCcc-cHHHHhh
Confidence 9999999885 9999997
No 48
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.50 E-value=4.4e-17 Score=148.98 Aligned_cols=88 Identities=22% Similarity=0.120 Sum_probs=74.3
Q ss_pred EeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEEEcCCC
Q psy7411 352 RGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYD 431 (474)
Q Consensus 352 ~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~~Q~~ 431 (474)
+++++.| +++.+++++||++++|++++|+||||||||||+|+|+|++ |++|+|.+.|+++.... +.+ .+++|+.
T Consensus 11 ~~~~~~~-g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~~-~~~---~~~~q~~ 84 (158)
T 1htw_A 11 EFSMLRF-GKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEEY-NIA---GKMIYHF 84 (158)
T ss_dssp HHHHHHH-HHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEEE-EET---TEEEEEE
T ss_pred HHHHHHH-HHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeeec-cCC---Ccceecc
Confidence 4567777 4567999999999999999999999999999999999999 99999999998875321 112 2789998
Q ss_pred CCCCCCCHHHHHHHH
Q psy7411 432 LLFEELTVEDHLQFF 446 (474)
Q Consensus 432 ~L~~~LTV~E~L~~~ 446 (474)
.++ .+|+.|++.++
T Consensus 85 ~l~-~ltv~e~l~~~ 98 (158)
T 1htw_A 85 DLY-RLADPEELEFM 98 (158)
T ss_dssp ECT-TCSCTTHHHHS
T ss_pred ccc-cCCcHHHHHHc
Confidence 898 89999999764
No 49
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.46 E-value=6.3e-14 Score=153.02 Aligned_cols=86 Identities=26% Similarity=0.285 Sum_probs=76.5
Q ss_pred ccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEE
Q psy7411 347 SGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGL 426 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~ 426 (474)
..++++|+++.|+ + ..++.+++++++||+++|+||||||||||+++|+|+.+|++|+|.+ ++.+||
T Consensus 356 ~~l~~~~l~~~~~-~-~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~------------~~~i~~ 421 (607)
T 3bk7_A 356 TLVEYPRLVKDYG-S-FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW------------DLTVAY 421 (607)
T ss_dssp EEEEECCEEEECS-S-CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC------------CCCEEE
T ss_pred eEEEEeceEEEec-c-eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE------------eeEEEE
Confidence 4689999999994 3 4789999999999999999999999999999999999999999875 245999
Q ss_pred EcCCCCCCCCCCHHHHHHHH
Q psy7411 427 CPQYDLLFEELTVEDHLQFF 446 (474)
Q Consensus 427 ~~Q~~~L~~~LTV~E~L~~~ 446 (474)
+||+..+.+.+||.|++...
T Consensus 422 v~Q~~~~~~~~tv~e~~~~~ 441 (607)
T 3bk7_A 422 KPQYIKAEYEGTVYELLSKI 441 (607)
T ss_dssp ECSSCCCCCSSBHHHHHHHH
T ss_pred EecCccCCCCCcHHHHHHhh
Confidence 99998887889999988764
No 50
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.44 E-value=8.5e-14 Score=149.93 Aligned_cols=86 Identities=26% Similarity=0.271 Sum_probs=76.2
Q ss_pred ccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEE
Q psy7411 347 SGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGL 426 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~ 426 (474)
..++++|+++.|+ + ..++.++|++++||+++|+||||||||||+++|+|+.+|++|+|.+ +..+||
T Consensus 286 ~~l~~~~l~~~~~-~-~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~------------~~~i~~ 351 (538)
T 1yqt_A 286 TLVTYPRLVKDYG-S-FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW------------DLTVAY 351 (538)
T ss_dssp EEEEECCEEEEET-T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC------------CCCEEE
T ss_pred eEEEEeeEEEEEC-C-EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE------------CceEEE
Confidence 4689999999994 3 4789999999999999999999999999999999999999999875 235999
Q ss_pred EcCCCCCCCCCCHHHHHHHH
Q psy7411 427 CPQYDLLFEELTVEDHLQFF 446 (474)
Q Consensus 427 ~~Q~~~L~~~LTV~E~L~~~ 446 (474)
+||+....+.+||.|++...
T Consensus 352 v~Q~~~~~~~~tv~~~~~~~ 371 (538)
T 1yqt_A 352 KPQYIKADYEGTVYELLSKI 371 (538)
T ss_dssp ECSSCCCCCSSBHHHHHHHH
T ss_pred EecCCcCCCCCcHHHHHHhh
Confidence 99998877889999988754
No 51
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.38 E-value=8.2e-13 Score=142.35 Aligned_cols=87 Identities=22% Similarity=0.197 Sum_probs=76.8
Q ss_pred ccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEE
Q psy7411 347 SGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGL 426 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~ 426 (474)
..+++++++|.|+ + ..++..|+++++||++||+||||||||||+++|+|+.+|++|+|.+++ +.+++
T Consensus 268 ~~l~~~~l~~~~~-~-~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~-----------~~i~~ 334 (538)
T 3ozx_A 268 TKMKWTKIIKKLG-D-FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK-----------QILSY 334 (538)
T ss_dssp EEEEECCEEEEET-T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC-----------CCEEE
T ss_pred ceEEEcceEEEEC-C-EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-----------eeeEe
Confidence 4688999999994 3 568888999999999999999999999999999999999999998654 35889
Q ss_pred EcCCCCCCCCCCHHHHHHHH
Q psy7411 427 CPQYDLLFEELTVEDHLQFF 446 (474)
Q Consensus 427 ~~Q~~~L~~~LTV~E~L~~~ 446 (474)
+||+......+||.||+...
T Consensus 335 ~~q~~~~~~~~tv~~~l~~~ 354 (538)
T 3ozx_A 335 KPQRIFPNYDGTVQQYLENA 354 (538)
T ss_dssp ECSSCCCCCSSBHHHHHHHH
T ss_pred echhcccccCCCHHHHHHHh
Confidence 99987776788999999874
No 52
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.38 E-value=4.8e-13 Score=152.42 Aligned_cols=90 Identities=23% Similarity=0.380 Sum_probs=77.1
Q ss_pred ccEEEEeeEEEEcC-CceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceE
Q psy7411 347 SGIQLRGLTKIYKT-GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLG 425 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~-~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG 425 (474)
..++++|+++.|++ .+++++++||++++||+++|+||||||||||+|+|+|+.+|++|+|.++|. .++|
T Consensus 670 ~mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~----------~~I~ 739 (986)
T 2iw3_A 670 AIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN----------CRIA 739 (986)
T ss_dssp EEEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT----------CCEE
T ss_pred ceEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc----------cceE
Confidence 46999999999953 367999999999999999999999999999999999999999999999762 2489
Q ss_pred EEcCCCC----CCCCCCHHHHHHHH
Q psy7411 426 LCPQYDL----LFEELTVEDHLQFF 446 (474)
Q Consensus 426 ~~~Q~~~----L~~~LTV~E~L~~~ 446 (474)
|++|+.. ...+.|+.|++.+.
T Consensus 740 yv~Q~~~~~l~~~~~~t~~e~i~~~ 764 (986)
T 2iw3_A 740 YIKQHAFAHIESHLDKTPSEYIQWR 764 (986)
T ss_dssp EECHHHHHHGGGCTTSCHHHHHHHH
T ss_pred eeccchhhhhhcccccCHHHHHHHH
Confidence 9999852 12346999998763
No 53
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.31 E-value=6.2e-14 Score=147.58 Aligned_cols=101 Identities=16% Similarity=0.127 Sum_probs=85.4
Q ss_pred ccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCe---ecCcc------h
Q psy7411 347 SGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGH---DIWYE------M 417 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~---dI~~~------~ 417 (474)
..++++++++.|+.+.++++++ |++.+||+++|+||||||||||+++|+|+.+|++|.+.+.|+ ++... .
T Consensus 130 ~~l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~ 208 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGP 208 (438)
T ss_dssp CTTTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHH
T ss_pred CceEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccc
Confidence 3578899999995357899999 999999999999999999999999999999999999999998 44321 2
Q ss_pred HHhhcceEEEcCC-CCCCCCCCHHHHHHHHHh
Q psy7411 418 GKVRESLGLCPQY-DLLFEELTVEDHLQFFAK 448 (474)
Q Consensus 418 ~~ir~~IG~~~Q~-~~L~~~LTV~E~L~~~~~ 448 (474)
...++.+++++|+ ..+++.+++.+|+.+.+.
T Consensus 209 ~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae 240 (438)
T 2dpy_A 209 DGRARSVVIAAPADVSPLLRMQGAAYATRIAE 240 (438)
T ss_dssp HHHHTEEEEEECTTSCHHHHHHHHHHHHHHHH
T ss_pred cccCceEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 3466789999995 567788899999987654
No 54
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.30 E-value=4.8e-13 Score=146.08 Aligned_cols=93 Identities=20% Similarity=0.268 Sum_probs=70.0
Q ss_pred EeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEE---------EECCeecCcchH---H
Q psy7411 352 RGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTA---------YIDGHDIWYEMG---K 419 (474)
Q Consensus 352 ~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i---------~i~G~dI~~~~~---~ 419 (474)
+|++++|++...+++++| ++++||+++|+||||||||||+++|+|+++|++|++ .+.|.++..... .
T Consensus 95 ~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~ 173 (607)
T 3bk7_A 95 EDCVHRYGVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKN 173 (607)
T ss_dssp GSEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHH
T ss_pred CCeEEEECCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhh
Confidence 789999943225999999 999999999999999999999999999999999995 345655432111 1
Q ss_pred hhcceEEEcCCCCCCC---CCCHHHHHHH
Q psy7411 420 VRESLGLCPQYDLLFE---ELTVEDHLQF 445 (474)
Q Consensus 420 ir~~IG~~~Q~~~L~~---~LTV~E~L~~ 445 (474)
.+..+++++|...+.+ ..|+.|++..
T Consensus 174 ~~~~i~~~~q~~~~~~~~~~~tv~e~l~~ 202 (607)
T 3bk7_A 174 GEIRPVVKPQYVDLLPKAVKGKVRELLKK 202 (607)
T ss_dssp TSCCCEEECSCGGGGGGTCCSBHHHHHHH
T ss_pred hhcceEEeechhhhchhhccccHHHHhhh
Confidence 2345889998743322 2389998864
No 55
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.26 E-value=9.3e-13 Score=141.84 Aligned_cols=95 Identities=23% Similarity=0.276 Sum_probs=69.5
Q ss_pred EE-EeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEE---------EECCeecCcchH-
Q psy7411 350 QL-RGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTA---------YIDGHDIWYEMG- 418 (474)
Q Consensus 350 ~i-~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i---------~i~G~dI~~~~~- 418 (474)
++ +|++|.|++...+++++| ++++||+++|+||||||||||+|+|+|+++|++|++ .++|.++.....
T Consensus 22 ~~~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~ 100 (538)
T 1yqt_A 22 QLEEDCVHRYGVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEK 100 (538)
T ss_dssp --CCCEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHH
T ss_pred hHhcCcEEEECCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHH
Confidence 44 589999943225899999 999999999999999999999999999999999985 345554432111
Q ss_pred --HhhcceEEEcCCCCCCCC---CCHHHHHHH
Q psy7411 419 --KVRESLGLCPQYDLLFEE---LTVEDHLQF 445 (474)
Q Consensus 419 --~ir~~IG~~~Q~~~L~~~---LTV~E~L~~ 445 (474)
..+..+++++|...+.+. .|+.|++..
T Consensus 101 ~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~ 132 (538)
T 1yqt_A 101 LKNGEIRPVVKPQYVDLIPKAVKGKVIELLKK 132 (538)
T ss_dssp HHTTSCCCEEECSCGGGSGGGCCSBHHHHHHH
T ss_pred HHHHhhhhhhhhhhhhhcchhhhccHHHHHhh
Confidence 112458899987543332 388888753
No 56
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.23 E-value=1.8e-11 Score=139.64 Aligned_cols=84 Identities=19% Similarity=0.157 Sum_probs=68.0
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEEE
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLC 427 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~ 427 (474)
.+...|+++.| +++.+++++||++++||+++|+||||||||||+|+|+| |++ .|.+... +.+++|+
T Consensus 435 ~L~~~~ls~~y-g~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~-----~~~~~~v 500 (986)
T 2iw3_A 435 DLCNCEFSLAY-GAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQE-----ECRTVYV 500 (986)
T ss_dssp EEEEEEEEEEE-TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTT-----TSCEEET
T ss_pred eeEEeeEEEEE-CCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCcccc-----ceeEEEE
Confidence 46677999999 56789999999999999999999999999999999995 433 4443311 1237899
Q ss_pred cCCC-CCCCCCCHHHHHHH
Q psy7411 428 PQYD-LLFEELTVEDHLQF 445 (474)
Q Consensus 428 ~Q~~-~L~~~LTV~E~L~~ 445 (474)
+|+. .+++.+|+.|++.+
T Consensus 501 ~q~~~~~~~~ltv~e~l~~ 519 (986)
T 2iw3_A 501 EHDIDGTHSDTSVLDFVFE 519 (986)
T ss_dssp TCCCCCCCTTSBHHHHHHT
T ss_pred cccccccccCCcHHHHHHH
Confidence 9874 67889999999976
No 57
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.23 E-value=9.7e-13 Score=131.98 Aligned_cols=84 Identities=13% Similarity=0.173 Sum_probs=70.4
Q ss_pred eeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcc-----hHHh--hcceEEEcCCCC-CC
Q psy7411 363 KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYE-----MGKV--RESLGLCPQYDL-LF 434 (474)
Q Consensus 363 ~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~-----~~~i--r~~IG~~~Q~~~-L~ 434 (474)
.++++++|++++|++++++||||||||||+++|+|+++|++|++.+.|.|+.+. .... |+.+++++|++. ++
T Consensus 88 ~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~ 167 (302)
T 3b9q_A 88 NSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 167 (302)
T ss_dssp -CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCC
T ss_pred ccccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccC
Confidence 345678999999999999999999999999999999999999999999998642 1222 346999999988 88
Q ss_pred CCCCHHHHHHHH
Q psy7411 435 EELTVEDHLQFF 446 (474)
Q Consensus 435 ~~LTV~E~L~~~ 446 (474)
+.+|++|++.+.
T Consensus 168 ~~~~v~e~l~~~ 179 (302)
T 3b9q_A 168 AATVLSKAVKRG 179 (302)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999874
No 58
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.23 E-value=9.9e-14 Score=132.05 Aligned_cols=67 Identities=22% Similarity=0.122 Sum_probs=51.5
Q ss_pred EEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEEEcCCC
Q psy7411 357 IYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYD 431 (474)
Q Consensus 357 ~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~~Q~~ 431 (474)
+| +++.+|+++ ++||+++|+||||||||||+++|+|+ +|++|+|. +.++.....+.++.+||+||++
T Consensus 9 ~~-g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~--~~~~~~~~~~~~~~ig~v~q~~ 75 (208)
T 3b85_A 9 TL-GQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVS--RIILTRPAVEAGEKLGFLPGTL 75 (208)
T ss_dssp SH-HHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCS--EEEEEECSCCTTCCCCSSCC--
T ss_pred CH-hHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeee--eEEecCCchhhhcceEEecCCH
Confidence 45 346788885 89999999999999999999999999 99999994 2333222223567799999975
No 59
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.22 E-value=4.1e-14 Score=134.68 Aligned_cols=71 Identities=20% Similarity=0.139 Sum_probs=48.3
Q ss_pred eeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcc--hHHhhcceEEEcCCCCCCCCC
Q psy7411 363 KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYE--MGKVRESLGLCPQYDLLFEEL 437 (474)
Q Consensus 363 ~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~--~~~ir~~IG~~~Q~~~L~~~L 437 (474)
.-|+++||++++|++++|+||||||||||+++|+|++ | |++.+ |.++.+. ....++.++|++|++.+++.+
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 83 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDK 83 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHH
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHh
Confidence 4799999999999999999999999999999999998 6 99999 7766432 112356789999987666543
No 60
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.19 E-value=1.7e-11 Score=133.93 Aligned_cols=82 Identities=26% Similarity=0.329 Sum_probs=67.5
Q ss_pred EeeEEEEcCCceeeeeeeeEEeCC-----cEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEE
Q psy7411 352 RGLTKIYKTGKKAVDNLTLDMYQN-----QITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGL 426 (474)
Q Consensus 352 ~~Lsk~y~~~~~aL~~lsL~i~~G-----ei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~ 426 (474)
+++.+.|++.+.++++++|++.+| |+++|+||||||||||+++|+|+.+|++|+. +. +..+++
T Consensus 350 ~~~~~~y~~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~------~~~i~~ 417 (608)
T 3j16_B 350 ASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP------KLNVSM 417 (608)
T ss_dssp SSSCCEECCEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC------SCCEEE
T ss_pred cceeEEecCcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc------CCcEEE
Confidence 456667754456899999999998 8899999999999999999999999999962 21 346899
Q ss_pred EcCCCCCCCCCCHHHHHHH
Q psy7411 427 CPQYDLLFEELTVEDHLQF 445 (474)
Q Consensus 427 ~~Q~~~L~~~LTV~E~L~~ 445 (474)
+||+.......||+|++..
T Consensus 418 ~~q~~~~~~~~tv~e~~~~ 436 (608)
T 3j16_B 418 KPQKIAPKFPGTVRQLFFK 436 (608)
T ss_dssp ECSSCCCCCCSBHHHHHHH
T ss_pred ecccccccCCccHHHHHHH
Confidence 9999776667799998754
No 61
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.18 E-value=5.1e-12 Score=121.67 Aligned_cols=78 Identities=17% Similarity=0.233 Sum_probs=52.8
Q ss_pred CCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEEEcCCCCCCCCCCH
Q psy7411 360 TGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTV 439 (474)
Q Consensus 360 ~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~~Q~~~L~~~LTV 439 (474)
+++.+|+++||++++|+++||+|||||||||++++|+|++ |.+.++ ..++.+++++|+. +++.+|+
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~---------~~~~~i~~v~~d~-~~~~l~~ 75 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE---------QRQRKVVILSQDR-FYKVLTA 75 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC---------GGGCSEEEEEGGG-GBCCCCH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc---------ccCCceEEEeCCc-CccccCH
Confidence 4567999999999999999999999999999999999976 333222 3467799999985 7778999
Q ss_pred HHHHHHHHhcCC
Q psy7411 440 EDHLQFFAKGKE 451 (474)
Q Consensus 440 ~E~L~~~~~lkg 451 (474)
.+++.+.....+
T Consensus 76 ~~~~~~~~~~~~ 87 (245)
T 2jeo_A 76 EQKAKALKGQYN 87 (245)
T ss_dssp HHHHHHHTTCCC
T ss_pred hHhhhhhccCCC
Confidence 999987655444
No 62
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.18 E-value=3e-13 Score=126.92 Aligned_cols=98 Identities=14% Similarity=0.005 Sum_probs=60.6
Q ss_pred ceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEEEcCCCCCCCCCCHHH
Q psy7411 362 KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVED 441 (474)
Q Consensus 362 ~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~~Q~~~L~~~LTV~E 441 (474)
.+++++ .++++||+++|+||||||||||+++|+|+++...+.+.+.+.+ .....++.+||++|+..+++.+|+.+
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~---~~~~~~~~i~~~~q~~~~~~~~~~~~ 83 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRA---PRPGEVDGVDYHFIDPTRFQQLIDQG 83 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSC---CCTTCCBTTTBEECCHHHHHHHHHTT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCceEEcccccccC---CcccccCCCeeEecCHHHHHHHHhcC
Confidence 456777 6999999999999999999999999999986433322221111 11123567999999988888888877
Q ss_pred HHHH----HH--hcCCCCHHHHHHHHHHH
Q psy7411 442 HLQF----FA--KGKEFNGITYGRALLLM 464 (474)
Q Consensus 442 ~L~~----~~--~lkg~~~~~~~~~l~~~ 464 (474)
++.. +. ..+|.+++++.+++++.
T Consensus 84 ~l~~~~~~~~n~~~~g~~~~~~~~~~~~~ 112 (207)
T 1znw_A 84 ELLEWAEIHGGLHRSGTLAQPVRAAAATG 112 (207)
T ss_dssp CEEEEEEEGGGTEEEEEEHHHHHHHHHHT
T ss_pred CceeehhhcCchhhcCCcHHHHHHHHHcC
Confidence 7642 22 44566666666665543
No 63
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.15 E-value=5.1e-12 Score=129.86 Aligned_cols=82 Identities=13% Similarity=0.175 Sum_probs=71.2
Q ss_pred eeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcc-----hHHh--hcceEEEcCCCC-CCCCC
Q psy7411 366 DNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYE-----MGKV--RESLGLCPQYDL-LFEEL 437 (474)
Q Consensus 366 ~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~-----~~~i--r~~IG~~~Q~~~-L~~~L 437 (474)
++++|++++|++++++||||||||||++.|+|+++|++|++.+.|.|+.+. .... |+.+++++|++. +++.+
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 568899999999999999999999999999999999999999999998642 1222 456999999988 88889
Q ss_pred CHHHHHHHHH
Q psy7411 438 TVEDHLQFFA 447 (474)
Q Consensus 438 TV~E~L~~~~ 447 (474)
+++|++.+..
T Consensus 228 tv~e~l~~~~ 237 (359)
T 2og2_A 228 VLSKAVKRGK 237 (359)
T ss_dssp HHHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 9999998753
No 64
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.15 E-value=2.5e-13 Score=136.88 Aligned_cols=98 Identities=20% Similarity=0.230 Sum_probs=74.1
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeE-----------------------EeCCcEEEEeCCCCCChhHHHHhhcCCCCCCee
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLD-----------------------MYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSG 404 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~-----------------------i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG 404 (474)
.|++++|+|.|. ++++++++. +++|+++||+||||||||||+++|+|+++|+.|
T Consensus 43 ~i~~~~v~~~y~---p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G 119 (312)
T 3aez_A 43 QIDLLEVEEVYL---PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARWDH 119 (312)
T ss_dssp CCCHHHHHHTHH---HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTT
T ss_pred eEEeeehhhhhh---hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhccccCC
Confidence 467889999883 466666653 899999999999999999999999999999765
Q ss_pred EEEECCeecCcchHHhhcceEEEcCCCCCCCCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q psy7411 405 TAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMS 466 (474)
Q Consensus 405 ~i~i~G~dI~~~~~~ir~~IG~~~Q~~~L~~~LTV~E~L~~~~~lkg~~~~~~~~~l~~~~~ 466 (474)
. +++++++|++.+++. |+.||+.+.. .+|.+.....+.+.+++.
T Consensus 120 ~----------------~~v~~v~qd~~~~~~-t~~e~~~~~~-~~g~~~~~d~~~~~~~L~ 163 (312)
T 3aez_A 120 H----------------PRVDLVTTDGFLYPN-AELQRRNLMH-RKGFPESYNRRALMRFVT 163 (312)
T ss_dssp C----------------CCEEEEEGGGGBCCH-HHHHHTTCTT-CTTSGGGBCHHHHHHHHH
T ss_pred C----------------CeEEEEecCccCCcc-cHHHHHHHHH-hcCCChHHHHHHHHHHHH
Confidence 3 458999999998888 9999986643 245544332333444443
No 65
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.14 E-value=1.1e-12 Score=129.59 Aligned_cols=73 Identities=19% Similarity=0.158 Sum_probs=46.3
Q ss_pred EEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEEEcCCCCCCCCCCHHHHHHHHHhcCC
Q psy7411 377 ITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAKGKE 451 (474)
Q Consensus 377 i~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~~Q~~~L~~~LTV~E~L~~~~~lkg 451 (474)
.++++||||||||||+|+|+|+.+|++|++.++|+++... ..++.+|+++|++.+++.+||.|++.+.....+
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~--~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~ 76 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKT--VEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINN 76 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCC--CSCCEEEESCC----CCEEEEECCCC--CCSBC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcc--eeeeeeEEEeecCCCcCCceEEechhhhhhccc
Confidence 4789999999999999999999999999999999987432 235679999999999999999999988765443
No 66
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.12 E-value=5.9e-13 Score=133.21 Aligned_cols=97 Identities=23% Similarity=0.258 Sum_probs=82.7
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEE-------------------eCCcEEEEeCCCCCChhHHHHhhcCCCC--CCeeEE
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDM-------------------YQNQITVLLGHNGAGKSTTMSMLTGLII--PTSGTA 406 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i-------------------~~Gei~gLLGpNGAGKTTLL~~L~GL~~--PtsG~i 406 (474)
.+++++|+|.| .++++++++.+ .+|+++||+||||||||||+++|+|+++ |++|++
T Consensus 37 ~i~~~~v~~~y---~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i 113 (308)
T 1sq5_A 37 DLSLEEVAEIY---LPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRV 113 (308)
T ss_dssp TCCHHHHHHTH---HHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCE
T ss_pred ccchHhHHHHH---HHHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeE
Confidence 47789999999 26899999988 9999999999999999999999999998 999999
Q ss_pred EE---CCeecCcchHHhhcceEEEcCCCCCCCCCCHHHHHHHHHhcCC
Q psy7411 407 YI---DGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAKGKE 451 (474)
Q Consensus 407 ~i---~G~dI~~~~~~ir~~IG~~~Q~~~L~~~LTV~E~L~~~~~lkg 451 (474)
.+ +|..... ..++.+|++ |...+++.+++.+++.+...+++
T Consensus 114 ~vi~~d~~~~~~---~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~~ 157 (308)
T 1sq5_A 114 ELITTDGFLHPN---QVLKERGLM-KKKGFPESYDMHRLVKFVSDLKS 157 (308)
T ss_dssp EEEEGGGGBCCH---HHHHHHTCT-TCTTSGGGBCHHHHHHHHHHHTT
T ss_pred EEEecCCccCcH---HHHHhCCEe-ecCCCCCCccHHHHHHHHHHHhC
Confidence 99 8876432 334568888 88788888999999998877654
No 67
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.11 E-value=1.9e-11 Score=134.42 Aligned_cols=85 Identities=21% Similarity=0.338 Sum_probs=44.1
Q ss_pred CceeeeeeeeEEeCCcEEEEeCCCCCChhHHH---------------------HhhcCCCCCCe-------eEEEECCee
Q psy7411 361 GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTM---------------------SMLTGLIIPTS-------GTAYIDGHD 412 (474)
Q Consensus 361 ~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL---------------------~~L~GL~~Pts-------G~i~i~G~d 412 (474)
.+++|+++||++++||+++|+||||||||||+ +++.|+.+|+. |.+.+++.+
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 35699999999999999999999999999998 89999999994 455555554
Q ss_pred cCcchHHhhcceEEEcCCCC-------------------CCCCCCHHHHHHHHHh
Q psy7411 413 IWYEMGKVRESLGLCPQYDL-------------------LFEELTVEDHLQFFAK 448 (474)
Q Consensus 413 I~~~~~~ir~~IG~~~Q~~~-------------------L~~~LTV~E~L~~~~~ 448 (474)
... ..++.+|+++|... .++.+||+||+.++..
T Consensus 110 ~~~---~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~ 161 (670)
T 3ux8_A 110 TSR---NPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDG 161 (670)
T ss_dssp --------CCBHHHHTTCC-------------------------CC---------
T ss_pred hhc---cchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhc
Confidence 421 11233445444322 3467899999988643
No 68
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.11 E-value=2.2e-11 Score=124.78 Aligned_cols=84 Identities=17% Similarity=0.078 Sum_probs=64.7
Q ss_pred eeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEEEc-CCCCC--CCCCCHHH
Q psy7411 365 VDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCP-QYDLL--FEELTVED 441 (474)
Q Consensus 365 L~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~~-Q~~~L--~~~LTV~E 441 (474)
++++++.+++|++++++||||||||||+++|+|+++|++|.|.++|.+-. .....++.+++++ |++.+ +...|+++
T Consensus 165 ~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~-~~~~~~~~v~~v~~q~~~~~~~~~~t~~~ 243 (361)
T 2gza_A 165 MSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPEL-FLPDHPNHVHLFYPSEAKEEENAPVTAAT 243 (361)
T ss_dssp HHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCC-CCTTCSSEEEEECC----------CCHHH
T ss_pred HHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCcccc-CccccCCEEEEeecCccccccccccCHHH
Confidence 49999999999999999999999999999999999999999999875311 1223466799999 77655 46789999
Q ss_pred HHHHHHhc
Q psy7411 442 HLQFFAKG 449 (474)
Q Consensus 442 ~L~~~~~l 449 (474)
++....+.
T Consensus 244 ~i~~~l~~ 251 (361)
T 2gza_A 244 LLRSCLRM 251 (361)
T ss_dssp HHHHHTTS
T ss_pred HHHHHHhc
Confidence 99986543
No 69
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.10 E-value=1.1e-11 Score=132.03 Aligned_cols=83 Identities=17% Similarity=0.195 Sum_probs=72.3
Q ss_pred eeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcc-----hHH--hhcceEEEcCCCCCCCCC
Q psy7411 365 VDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYE-----MGK--VRESLGLCPQYDLLFEEL 437 (474)
Q Consensus 365 L~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~-----~~~--ir~~IG~~~Q~~~L~~~L 437 (474)
-+++||++++|++++|+|+||||||||+++|+|+++|++|+|.+.|.++.+. ... .|+.+++++|+..+++.+
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~ 362 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS 362 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence 4789999999999999999999999999999999999999999988887542 122 356799999998888889
Q ss_pred CHHHHHHHHH
Q psy7411 438 TVEDHLQFFA 447 (474)
Q Consensus 438 TV~E~L~~~~ 447 (474)
++++++.+..
T Consensus 363 tV~e~l~~a~ 372 (503)
T 2yhs_A 363 VIFDAIQAAK 372 (503)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998864
No 70
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.08 E-value=9.7e-12 Score=124.10 Aligned_cols=75 Identities=15% Similarity=0.173 Sum_probs=52.6
Q ss_pred EEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEE---CCeecCcchHHhh-cceEEEcCCCC--------------
Q psy7411 371 DMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYI---DGHDIWYEMGKVR-ESLGLCPQYDL-------------- 432 (474)
Q Consensus 371 ~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i---~G~dI~~~~~~ir-~~IG~~~Q~~~-------------- 432 (474)
++.+|++++++||||||||||+|+|+|+.+|++|++.+ +|+++.......+ +.+|+++|.+.
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~~ 244 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEEL 244 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHHH
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHHH
Confidence 34578999999999999999999999999999999999 8988764322222 35899999874
Q ss_pred --CCCCCCHHHHHHHH
Q psy7411 433 --LFEELTVEDHLQFF 446 (474)
Q Consensus 433 --L~~~LTV~E~L~~~ 446 (474)
+++++|+ ||+.|.
T Consensus 245 ~~l~~~~~~-~n~~~~ 259 (301)
T 1u0l_A 245 KHYFKEFGD-KQCFFS 259 (301)
T ss_dssp GGGSTTSSS-CCCSST
T ss_pred HHHHHhccc-ccCcCC
Confidence 5888999 988875
No 71
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.07 E-value=8.1e-13 Score=126.59 Aligned_cols=89 Identities=16% Similarity=0.050 Sum_probs=67.0
Q ss_pred eEEeCCcEEEEeCCCCCChhHHHHhhcCCCCC--CeeEEEECCeecCcchHHhhcceEEEcCCCCCCCCCCH----HHHH
Q psy7411 370 LDMYQNQITVLLGHNGAGKSTTMSMLTGLIIP--TSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTV----EDHL 443 (474)
Q Consensus 370 L~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~P--tsG~i~i~G~dI~~~~~~ir~~IG~~~Q~~~L~~~LTV----~E~L 443 (474)
-.+++|++++|+||||||||||+++|+|+.+| .+|.+.+.+.+... ..++.++|+||+..+|+.+++ .||+
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~---~e~~gi~y~fq~~~~f~~~~~~~~f~E~~ 87 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP---GEVHGEHYFFVNHDEFKEMISRDAFLEHA 87 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT---TCCBTTTBEECCHHHHHHHHHTTCEEEEE
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc---ccccCceEEECCHHHHHHHHhcCHHHHHH
Confidence 35789999999999999999999999999986 68999888766532 234568999999888888888 6777
Q ss_pred HHHHhcCCCCHHHHHHHH
Q psy7411 444 QFFAKGKEFNGITYGRAL 461 (474)
Q Consensus 444 ~~~~~lkg~~~~~~~~~l 461 (474)
.++...+|.+.+++.+.+
T Consensus 88 ~~~~~~yg~~~~~v~~~l 105 (219)
T 1s96_A 88 EVFGNYYGTSREAIEQVL 105 (219)
T ss_dssp EETTEEEEEEHHHHHHHH
T ss_pred HHHhccCCCCHHHHHHHH
Confidence 766666666655444433
No 72
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.06 E-value=2e-11 Score=124.83 Aligned_cols=84 Identities=17% Similarity=0.136 Sum_probs=69.3
Q ss_pred ccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcc--------hH
Q psy7411 347 SGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYE--------MG 418 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~--------~~ 418 (474)
+.++++++++.|+.+.++++++ |++.+||+++|+||||||||||+++|+|+.+|+.|.+.+.|++.... ..
T Consensus 44 ~~i~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~~ 122 (347)
T 2obl_A 44 DPLLRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQS 122 (347)
T ss_dssp CSTTCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCHH
T ss_pred CCeeecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhhh
Confidence 3577899999995367899999 99999999999999999999999999999999999999998763211 11
Q ss_pred HhhcceEEEcCCC
Q psy7411 419 KVRESLGLCPQYD 431 (474)
Q Consensus 419 ~ir~~IG~~~Q~~ 431 (474)
..++.+++++|.+
T Consensus 123 ~~~~~v~~~~~~~ 135 (347)
T 2obl_A 123 TLSKCVLVVTTSD 135 (347)
T ss_dssp HHTTEEEEEECTT
T ss_pred hhhceEEEEECCC
Confidence 2345688888864
No 73
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.03 E-value=7e-12 Score=132.71 Aligned_cols=84 Identities=12% Similarity=0.165 Sum_probs=71.5
Q ss_pred ccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCee-E-EEECCeecCcchHHhhcce
Q psy7411 347 SGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSG-T-AYIDGHDIWYEMGKVRESL 424 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG-~-i~i~G~dI~~~~~~ir~~I 424 (474)
..++++|+++.|+ ++||++++|++++|+||||||||||+|+|+|+.+|++| + +.++|. .++.+
T Consensus 117 ~mi~~~nl~~~y~-------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~--------~~~~i 181 (460)
T 2npi_A 117 TMKYIYNLHFMLE-------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLD--------PQQPI 181 (460)
T ss_dssp THHHHHHHHHHHH-------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECC--------TTSCS
T ss_pred chhhhhhhhehhh-------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCC--------ccCCe
Confidence 3467778888772 69999999999999999999999999999999999999 9 999981 36779
Q ss_pred EEEcCCCC---CCCCCCHHHHHHHH
Q psy7411 425 GLCPQYDL---LFEELTVEDHLQFF 446 (474)
Q Consensus 425 G~~~Q~~~---L~~~LTV~E~L~~~ 446 (474)
+++||+.. +.+.+|++||+ +.
T Consensus 182 ~~vpq~~~l~~~~~~~tv~eni-~~ 205 (460)
T 2npi_A 182 FTVPGCISATPISDILDAQLPT-WG 205 (460)
T ss_dssp SSCSSCCEEEECCSCCCTTCTT-CS
T ss_pred eeeccchhhcccccccchhhhh-cc
Confidence 99999974 34567999888 53
No 74
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.01 E-value=8.7e-12 Score=133.41 Aligned_cols=81 Identities=16% Similarity=0.169 Sum_probs=67.2
Q ss_pred EEEeeEEEEcCCceeeeeeee-EEeCCcEEEEeCCCCCChhHHHHh--hcCCCCCCeeEEEECCeecCcchHHhhcceEE
Q psy7411 350 QLRGLTKIYKTGKKAVDNLTL-DMYQNQITVLLGHNGAGKSTTMSM--LTGLIIPTSGTAYIDGHDIWYEMGKVRESLGL 426 (474)
Q Consensus 350 ~i~~Lsk~y~~~~~aL~~lsL-~i~~Gei~gLLGpNGAGKTTLL~~--L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~ 426 (474)
+.+++.+.. .+.++|+++++ .+++||+++|+||||||||||+++ ++|+.+|++|.++++|++......+.++.+|+
T Consensus 14 ~~~~~~~~~-~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~ 92 (525)
T 1tf7_A 14 EHQAIAKMR-TMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGW 92 (525)
T ss_dssp CCSSCCEEC-CCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTC
T ss_pred ccccccccc-CCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCC
Confidence 334555544 56789999999 999999999999999999999999 78999999999999998854444455667899
Q ss_pred EcCCC
Q psy7411 427 CPQYD 431 (474)
Q Consensus 427 ~~Q~~ 431 (474)
++|+.
T Consensus 93 ~~q~~ 97 (525)
T 1tf7_A 93 DLAKL 97 (525)
T ss_dssp CHHHH
T ss_pred ChHHh
Confidence 99874
No 75
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.00 E-value=1.2e-12 Score=132.92 Aligned_cols=88 Identities=15% Similarity=0.035 Sum_probs=75.1
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcch-----HHhhc
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEM-----GKVRE 422 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~-----~~ir~ 422 (474)
.++++++++.| +.+.+++++++++.+|++++|+|+||||||||+++|+|+++|++|++.+.|.++.... ...++
T Consensus 29 ~ie~~~~~~~~-~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~ 107 (337)
T 2qm8_A 29 LAESRRADHRA-AVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKT 107 (337)
T ss_dssp HHTCSSHHHHH-HHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGG
T ss_pred HHeeCCccccc-ChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhh
Confidence 35677888888 4567999999999999999999999999999999999999999999999999885321 23566
Q ss_pred ceEEEcCCCCCCCC
Q psy7411 423 SLGLCPQYDLLFEE 436 (474)
Q Consensus 423 ~IG~~~Q~~~L~~~ 436 (474)
++|+++|++.++..
T Consensus 108 ~i~~v~q~~~~~~~ 121 (337)
T 2qm8_A 108 RMARLAIDRNAFIR 121 (337)
T ss_dssp GSTTGGGCTTEEEE
T ss_pred hheeeccCcccccc
Confidence 79999999887753
No 76
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.00 E-value=7.5e-11 Score=118.40 Aligned_cols=73 Identities=18% Similarity=0.200 Sum_probs=63.3
Q ss_pred CCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcc-----hHHh--hcceEEEcCCCCCCCCCCHHHHHHHH
Q psy7411 374 QNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYE-----MGKV--RESLGLCPQYDLLFEELTVEDHLQFF 446 (474)
Q Consensus 374 ~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~-----~~~i--r~~IG~~~Q~~~L~~~LTV~E~L~~~ 446 (474)
+|++++++||||||||||+++|+|+++|++|++.+.|.|+.+. .... |+.+++++|++.+++.+++.|++...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999998532 1222 35699999999999999999999764
No 77
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.99 E-value=6.7e-11 Score=118.25 Aligned_cols=71 Identities=17% Similarity=0.091 Sum_probs=52.9
Q ss_pred EEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEE---CCeecCcchHHhh-cceEEEcCCCCCC-----CCCCHHH
Q psy7411 371 DMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYI---DGHDIWYEMGKVR-ESLGLCPQYDLLF-----EELTVED 441 (474)
Q Consensus 371 ~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i---~G~dI~~~~~~ir-~~IG~~~Q~~~L~-----~~LTV~E 441 (474)
++.+|++++++||||+|||||+|+|+ +.+|++|+|.+ +|+++.+.....+ +.+|+++|++.+. +++|+ |
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e 238 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-R 238 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-G
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-H
Confidence 34568999999999999999999999 99999999999 8988764332333 3689999998653 68899 8
Q ss_pred HH
Q psy7411 442 HL 443 (474)
Q Consensus 442 ~L 443 (474)
++
T Consensus 239 ~l 240 (302)
T 2yv5_A 239 EV 240 (302)
T ss_dssp GG
T ss_pred HH
Confidence 87
No 78
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.98 E-value=1.2e-11 Score=134.92 Aligned_cols=96 Identities=18% Similarity=0.235 Sum_probs=60.5
Q ss_pred cEEEEeeEEEEcCC-ceeeeee----------eeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCC-CeeEEEECCeecCc
Q psy7411 348 GIQLRGLTKIYKTG-KKAVDNL----------TLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIP-TSGTAYIDGHDIWY 415 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~-~~aL~~l----------sL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~P-tsG~i~i~G~dI~~ 415 (474)
.+.++++++.|++. +++++.+ +++++. ++++||||||||||+++|+|+..| ++|.+.++|.++..
T Consensus 10 ~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~ 86 (608)
T 3szr_A 10 SVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKL 86 (608)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEE
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEE
Confidence 36788999999522 2334333 366655 999999999999999999999988 89999999998631
Q ss_pred ----chHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q psy7411 416 ----EMGKVRESLGLCPQYDLLFEELTVEDHLQFF 446 (474)
Q Consensus 416 ----~~~~ir~~IG~~~Q~~~L~~~LTV~E~L~~~ 446 (474)
...+.++.+|+++|+..+++.+||+|++.+.
T Consensus 87 ~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~ 121 (608)
T 3szr_A 87 KKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKA 121 (608)
T ss_dssp EECSSSSCCEEEESCC---CCCCCHHHHHTTHHHH
T ss_pred ecCCccccceeEEeeecccccCCCHHHHHHHHHHH
Confidence 1235677899999999999999999999875
No 79
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.96 E-value=1.1e-11 Score=129.66 Aligned_cols=75 Identities=16% Similarity=0.139 Sum_probs=61.2
Q ss_pred ceeeeeeeeEEeCCc--------------------EEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhh
Q psy7411 362 KKAVDNLTLDMYQNQ--------------------ITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVR 421 (474)
Q Consensus 362 ~~aL~~lsL~i~~Ge--------------------i~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir 421 (474)
+.+++++++++++|+ +++|+||||||||||+|+|+|+.+|++|+|.++|.++. |
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t------~ 109 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT------M 109 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----------C
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc------e
Confidence 568999999999999 99999999999999999999999999999999987652 1
Q ss_pred cceEEEcCCCCCCCCCCHHHHHHH
Q psy7411 422 ESLGLCPQYDLLFEELTVEDHLQF 445 (474)
Q Consensus 422 ~~IG~~~Q~~~L~~~LTV~E~L~~ 445 (474)
.++++|++ .++.+|+.|++.+
T Consensus 110 --~~~v~q~~-~~~~ltv~D~~g~ 130 (413)
T 1tq4_A 110 --ERHPYKHP-NIPNVVFWDLPGI 130 (413)
T ss_dssp --CCEEEECS-SCTTEEEEECCCG
T ss_pred --eEEecccc-ccCCeeehHhhcc
Confidence 26888874 4666777766543
No 80
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.96 E-value=2.3e-12 Score=129.64 Aligned_cols=57 Identities=14% Similarity=0.134 Sum_probs=51.4
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEEC
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYID 409 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~ 409 (474)
.++++||++.|+ +++|+++||++++|++++|+||||||||||+++|+|++ +|+|...
T Consensus 101 ~i~~~~vs~~y~--~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~~~ 157 (305)
T 2v9p_A 101 FFNYQNIELITF--INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVLSF 157 (305)
T ss_dssp HHHHTTCCHHHH--HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEECG
T ss_pred eEEEEEEEEEcC--hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEEEE
Confidence 367889999994 67999999999999999999999999999999999998 7988543
No 81
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.96 E-value=1.3e-10 Score=123.73 Aligned_cols=61 Identities=33% Similarity=0.332 Sum_probs=53.4
Q ss_pred EEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecC
Q psy7411 350 QLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIW 414 (474)
Q Consensus 350 ~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~ 414 (474)
++.+++... ..+++++||++++ |+++|+||||||||||+++|+|+++|++|+|.++|+++.
T Consensus 8 ~l~~l~~~~---~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~ 68 (483)
T 3euj_A 8 KFRSLTLIN---WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEA 68 (483)
T ss_dssp EEEEEEEEE---ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSC
T ss_pred ceeEEEEec---cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcc
Confidence 344554432 4689999999999 999999999999999999999999999999999998875
No 82
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.93 E-value=1.4e-10 Score=117.65 Aligned_cols=77 Identities=16% Similarity=0.179 Sum_probs=64.9
Q ss_pred EEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcc-----hHHhhcc--eEEEcCCCCCCCCCCHHHHH
Q psy7411 371 DMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYE-----MGKVRES--LGLCPQYDLLFEELTVEDHL 443 (474)
Q Consensus 371 ~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~-----~~~ir~~--IG~~~Q~~~L~~~LTV~E~L 443 (474)
..++|++++++||||||||||+++|+|+++|++|++.+.|.|+.+. ....+++ +.+++|...+++.++++|++
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 3478999999999999999999999999999999999999998642 2222333 55999999999999999999
Q ss_pred HHHH
Q psy7411 444 QFFA 447 (474)
Q Consensus 444 ~~~~ 447 (474)
.+..
T Consensus 205 ~~~~ 208 (328)
T 3e70_C 205 QHAK 208 (328)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8753
No 83
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.92 E-value=9.3e-12 Score=114.99 Aligned_cols=73 Identities=14% Similarity=0.107 Sum_probs=53.1
Q ss_pred eeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcch-HHhhcceEEEcCCCCCCCCCCHHHHHHH
Q psy7411 369 TLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEM-GKVRESLGLCPQYDLLFEELTVEDHLQF 445 (474)
Q Consensus 369 sL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~-~~ir~~IG~~~Q~~~L~~~LTV~E~L~~ 445 (474)
|+++.+|++++|+|||||||||++++|+|+.+ .+.+.+.++.... ...+..++|++|+..+++.+++.+++..
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLE 74 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEe
Confidence 56788999999999999999999999999964 4677776665322 2235568999998877777776655443
No 84
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.88 E-value=1e-10 Score=110.81 Aligned_cols=71 Identities=14% Similarity=0.128 Sum_probs=53.2
Q ss_pred EEeCCcEEEEeCCCCCChhHHHHhhc--CCCCCCeeEEEECCeecCcchHHhhcceEEEcCCCCCCCCCCHHH
Q psy7411 371 DMYQNQITVLLGHNGAGKSTTMSMLT--GLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVED 441 (474)
Q Consensus 371 ~i~~Gei~gLLGpNGAGKTTLL~~L~--GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~~Q~~~L~~~LTV~E 441 (474)
.+++|++++|+||||||||||+++|+ |+.++.+|.+.+.+.+......+.++.+|+.+|+....+.+++.+
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 98 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVD 98 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEE
Confidence 68999999999999999999999999 775777888888876654444444566888888654333333333
No 85
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.88 E-value=1.1e-10 Score=116.61 Aligned_cols=85 Identities=19% Similarity=0.141 Sum_probs=36.7
Q ss_pred EeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCC-CCCCeeEEEECCeecCcchHHhhcceEEEcCC
Q psy7411 352 RGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGL-IIPTSGTAYIDGHDIWYEMGKVRESLGLCPQY 430 (474)
Q Consensus 352 ~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL-~~PtsG~i~i~G~dI~~~~~~ir~~IG~~~Q~ 430 (474)
.||+|.| +++.++++++|++ +++|+||+|||||+++|.|. ..|++| +.+.|.++.... . ++.+++++|.
T Consensus 2 ~~l~~~~-~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t~-~-~~~~~~~~q~ 71 (301)
T 2qnr_A 2 SNLPNQV-HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERTV-Q-IEASTVEIEE 71 (301)
T ss_dssp -----------------CEEE------EEEEETTSSHHHHHHHHHC---------------------------CEEEEC-
T ss_pred CCCcceE-CCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCcc-e-EeeEEEEecC
Confidence 4789999 5678999999998 99999999999999999998 889999 888887764322 1 3458999998
Q ss_pred CCCCCCCCHHHHHHHH
Q psy7411 431 DLLFEELTVEDHLQFF 446 (474)
Q Consensus 431 ~~L~~~LTV~E~L~~~ 446 (474)
+.+...+|+.|+..+.
T Consensus 72 ~~~~~~ltv~Dt~g~~ 87 (301)
T 2qnr_A 72 RGVKLRLTVVDTPGYG 87 (301)
T ss_dssp --CCEEEEEEEEC---
T ss_pred CCcccCcchhhhhhhh
Confidence 8877778888877664
No 86
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.88 E-value=2.2e-11 Score=127.80 Aligned_cols=87 Identities=21% Similarity=0.147 Sum_probs=60.4
Q ss_pred EEEEeeEEEEcCCceeeeeeeeEEeCCcE--EEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chHHhhcceE
Q psy7411 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQI--TVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMGKVRESLG 425 (474)
Q Consensus 349 I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei--~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~~ir~~IG 425 (474)
+++++ ++.| ++.+ ++++|+++++|++ ++|+||||||||||+++|+|+. ++|.++.. .....++.++
T Consensus 17 l~~~~-~~~y-~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~~i~ 85 (427)
T 2qag_B 17 VPLAG-HVGF-DSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQSNT 85 (427)
T ss_dssp CCCCC-CC-C-C--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEEEEE
T ss_pred EEEee-EEEE-CCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEeeEE
Confidence 45566 7888 4456 9999999999999 9999999999999999999984 23333321 1112345799
Q ss_pred EEcCCCCCCCCCCHHHHHHHH
Q psy7411 426 LCPQYDLLFEELTVEDHLQFF 446 (474)
Q Consensus 426 ~~~Q~~~L~~~LTV~E~L~~~ 446 (474)
+++|++.+++.+|+.|++.+.
T Consensus 86 ~v~Q~~~l~~~ltv~D~~~~g 106 (427)
T 2qag_B 86 YDLQESNVRLKLTIVSTVGFG 106 (427)
T ss_dssp EEEEC--CEEEEEEEEEECCC
T ss_pred EEeecCccccccchhhhhhhh
Confidence 999998888888998888654
No 87
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=98.86 E-value=1.4e-09 Score=111.80 Aligned_cols=84 Identities=19% Similarity=0.243 Sum_probs=67.3
Q ss_pred eeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCC--------------------------------------CCee
Q psy7411 363 KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLII--------------------------------------PTSG 404 (474)
Q Consensus 363 ~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~--------------------------------------PtsG 404 (474)
.++++++|++.+| +++|+||||||||||+++|.++.. +.+|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 5799999999999 999999999999999999976654 5578
Q ss_pred EEEECCeecCc-chHHhhcc-eEEEcCCCCCCCCCCHHHHHHHHHh
Q psy7411 405 TAYIDGHDIWY-EMGKVRES-LGLCPQYDLLFEELTVEDHLQFFAK 448 (474)
Q Consensus 405 ~i~i~G~dI~~-~~~~ir~~-IG~~~Q~~~L~~~LTV~E~L~~~~~ 448 (474)
++.++|+++.. ...++.+. +++++|++.++.. +..++..+...
T Consensus 128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~ 172 (415)
T 4aby_A 128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDR 172 (415)
T ss_dssp EEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHT
T ss_pred EEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHH
Confidence 99999999864 34455544 8999999877654 66666666544
No 88
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.85 E-value=3.3e-10 Score=114.06 Aligned_cols=74 Identities=18% Similarity=0.258 Sum_probs=46.1
Q ss_pred eEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEE---CCeecCcchHHhhcceEEEcCCCCCCC----CCCHHHH
Q psy7411 370 LDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYI---DGHDIWYEMGKVRESLGLCPQYDLLFE----ELTVEDH 442 (474)
Q Consensus 370 L~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i---~G~dI~~~~~~ir~~IG~~~Q~~~L~~----~LTV~E~ 442 (474)
+++.+|++++++||||+|||||+|+|+|+.+|++|++.+ .|+.+.+.....+..+|+++|.+.+.+ .+|+ |+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e~ 246 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-EE 246 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-HH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-HH
Confidence 556789999999999999999999999999999999998 887765432222323799999987765 6899 88
Q ss_pred HH
Q psy7411 443 LQ 444 (474)
Q Consensus 443 L~ 444 (474)
+.
T Consensus 247 l~ 248 (307)
T 1t9h_A 247 LG 248 (307)
T ss_dssp HG
T ss_pred HH
Confidence 83
No 89
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.85 E-value=3.4e-10 Score=114.64 Aligned_cols=79 Identities=15% Similarity=0.182 Sum_probs=64.5
Q ss_pred eeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEEEcCCCCCCCCCCHHHH
Q psy7411 363 KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDH 442 (474)
Q Consensus 363 ~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~~Q~~~L~~~LTV~E~ 442 (474)
++++++++.+++|++++++||||||||||+++|+|+++|++|.+.++|.+... ....++.++++++ ...+.++.
T Consensus 159 ~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~-~~~~~~~i~~~~g-----gg~~~r~~ 232 (330)
T 2pt7_A 159 QAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIV-FKHHKNYTQLFFG-----GNITSADC 232 (330)
T ss_dssp HHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCC-CSSCSSEEEEECB-----TTBCHHHH
T ss_pred HHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccc-cccchhEEEEEeC-----CChhHHHH
Confidence 47899999999999999999999999999999999999999999999875321 1224566888875 45677777
Q ss_pred HHHHH
Q psy7411 443 LQFFA 447 (474)
Q Consensus 443 L~~~~ 447 (474)
++...
T Consensus 233 la~aL 237 (330)
T 2pt7_A 233 LKSCL 237 (330)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 76543
No 90
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.84 E-value=6.3e-10 Score=114.28 Aligned_cols=94 Identities=16% Similarity=0.177 Sum_probs=64.3
Q ss_pred eeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCC-CCeeEEEEC-CeecCcchHHhhcceEEEcCCCCCCCCCCHHHH
Q psy7411 365 VDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLII-PTSGTAYID-GHDIWYEMGKVRESLGLCPQYDLLFEELTVEDH 442 (474)
Q Consensus 365 L~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~-PtsG~i~i~-G~dI~~~~~~ir~~IG~~~Q~~~L~~~LTV~E~ 442 (474)
++++++. .+|++++++||||+|||||+++|+|+.+ |++|+|.+. |++..+ ..++.+++++|...+++..+++|+
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~t---t~~~~i~~v~q~~~l~dtpgv~e~ 281 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHT---TTAARLYHFPHGGDVIDSPGVREF 281 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC----------------CCCEEEECTTSCEEEECHHHHTC
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccc---eEEEEEEEECCCCEecCcccHHHh
Confidence 4445543 3799999999999999999999999999 999999987 765432 235569999999888888888884
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHhH
Q psy7411 443 LQFFAKGKEFNGITYGRALLLMMSY 467 (474)
Q Consensus 443 L~~~~~lkg~~~~~~~~~l~~~~~~ 467 (474)
.+.+.+.+++.+..++++.+
T Consensus 282 -----~l~~l~~~e~~~~~~e~l~~ 301 (358)
T 2rcn_A 282 -----GLWHLEPEQITQGFVEFHDY 301 (358)
T ss_dssp -----CCCCCCHHHHHHTSGGGGGG
T ss_pred -----hhcCCCHHHHHHHHHHHHHH
Confidence 24456666666666665544
No 91
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.83 E-value=9e-10 Score=120.31 Aligned_cols=53 Identities=30% Similarity=0.426 Sum_probs=45.9
Q ss_pred eeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEE
Q psy7411 353 GLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTA 406 (474)
Q Consensus 353 ~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i 406 (474)
+++++|+++...+++++ .+++||++||+||||||||||+++|+|+++|++|++
T Consensus 82 ~~~~~Y~~~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i 134 (608)
T 3j16_B 82 HVTHRYSANSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRF 134 (608)
T ss_dssp TEEEECSTTSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTT
T ss_pred CeEEEECCCceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceE
Confidence 45678854445677777 689999999999999999999999999999999987
No 92
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.81 E-value=2.8e-10 Score=104.03 Aligned_cols=72 Identities=26% Similarity=0.304 Sum_probs=54.3
Q ss_pred EEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEEEcCCCCCCCCCCHHHHHHHHH
Q psy7411 371 DMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFA 447 (474)
Q Consensus 371 ~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~~Q~~~L~~~LTV~E~L~~~~ 447 (474)
.+++|++++|+|||||||||++++|+|. |+.|.+.++|.++.... ..++.+++++|... +.+++.|++.+.+
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~-~~~~~~~~~~~~~~--~~~~v~~~l~~~~ 76 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYI-KHGRIDPWLPQSHQ--QNRMIMQIAADVA 76 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTC-CSSCCCTTSSSHHH--HHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhh-hcccccCCccchhh--hhHHHHHHHHHHH
Confidence 4679999999999999999999999998 78899999987763221 11233567777543 4568888887653
No 93
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.78 E-value=2.1e-10 Score=107.28 Aligned_cols=71 Identities=20% Similarity=0.247 Sum_probs=51.7
Q ss_pred EEeCCcEEEEeCCCCCChhHHHHhhcCCCCC-------CeeEEEECCeecCcchHHhhcceEEEcCCCCCCCCCCHHHHH
Q psy7411 371 DMYQNQITVLLGHNGAGKSTTMSMLTGLIIP-------TSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHL 443 (474)
Q Consensus 371 ~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~P-------tsG~i~i~G~dI~~~~~~ir~~IG~~~Q~~~L~~~LTV~E~L 443 (474)
.+++||+++|+||||||||||+++|+|+..| ..|.+++++++... ++++++++|...+++. ++.||+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~-----~~~i~~~~~~~~~~~~-~~~~~~ 94 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR-----PERIREIAQNRGLDPD-EVLKHI 94 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC-----HHHHHHHHHHTTSCHH-HHHHTE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC-----HHHHHHHHHHcCCCHH-HHhhcE
Confidence 6899999999999999999999999996554 44588888765321 1224455666566555 788887
Q ss_pred HHHH
Q psy7411 444 QFFA 447 (474)
Q Consensus 444 ~~~~ 447 (474)
.+..
T Consensus 95 ~~~~ 98 (231)
T 4a74_A 95 YVAR 98 (231)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 6543
No 94
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.76 E-value=2.7e-09 Score=114.92 Aligned_cols=60 Identities=33% Similarity=0.566 Sum_probs=46.4
Q ss_pred eeEEEEcCCceeeeeeeeEE-eCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEE-----------EECCeecC
Q psy7411 353 GLTKIYKTGKKAVDNLTLDM-YQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTA-----------YIDGHDIW 414 (474)
Q Consensus 353 ~Lsk~y~~~~~aL~~lsL~i-~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i-----------~i~G~dI~ 414 (474)
+.+-+|+.+ .++-..|.+ ++||++||+||||||||||+|+|+|+++|++|++ .+.|+++.
T Consensus 4 ~~~~~~~~~--~f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~ 75 (538)
T 3ozx_A 4 EVIHRYKVN--GFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIY 75 (538)
T ss_dssp CEEEESSTT--SCEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTH
T ss_pred CCceecCCC--ceeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHH
Confidence 345577432 344444544 5999999999999999999999999999999998 56676654
No 95
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.73 E-value=3.7e-10 Score=118.18 Aligned_cols=91 Identities=16% Similarity=0.086 Sum_probs=56.4
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEEE
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLC 427 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~ 427 (474)
.+.+++|++.| +++.++++++|++ +|+|+||+|||||+++|+|+..|+.|. .|.++.......++.++++
T Consensus 11 ~l~~~~l~~~y-~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~---~~~~~~~~~t~~~~~i~~v 80 (418)
T 2qag_C 11 YVGFANLPNQV-YRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEY---PGPSHRIKKTVQVEQSKVL 80 (418)
T ss_dssp ----CCCCCCT-TTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCC---CSCC-----CCEEEEEECC
T ss_pred cEEEEecceeE-CCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCC---CCcccCCccceeeeeEEEE
Confidence 47899999999 5678999999998 999999999999999999998866551 2222211101113458999
Q ss_pred cCCCCCCCCCCHHHHHHHHHh
Q psy7411 428 PQYDLLFEELTVEDHLQFFAK 448 (474)
Q Consensus 428 ~Q~~~L~~~LTV~E~L~~~~~ 448 (474)
+|.+.++..+|+.|++.+...
T Consensus 81 ~q~~~~~~~Ltv~Dt~g~~~~ 101 (418)
T 2qag_C 81 IKEGGVQLLLTIVDTPGFGDA 101 (418)
T ss_dssp ------CEEEEEEECC-----
T ss_pred EecCCcccceeeeechhhhhh
Confidence 999888888899888877543
No 96
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.72 E-value=2.2e-10 Score=119.85 Aligned_cols=96 Identities=18% Similarity=0.162 Sum_probs=69.8
Q ss_pred EEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcch-----HHhhcc
Q psy7411 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEM-----GKVRES 423 (474)
Q Consensus 349 I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~-----~~ir~~ 423 (474)
++++++.+.| +...+++++ +. .+|++++++||||||||||+++|+|+++|++|+|.+.+.++.... .++++.
T Consensus 144 ~~l~~Lg~~~-~~~~~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~ 220 (418)
T 1p9r_A 144 LDLHSLGMTA-HNHDNFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPR 220 (418)
T ss_dssp CCGGGSCCCH-HHHHHHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGG
T ss_pred CCHHHcCCCH-HHHHHHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccc
Confidence 3455565555 334577777 54 899999999999999999999999999999999999887763211 123444
Q ss_pred eEEEc---------CCCCC--CCC----CCHHHHHHHHH
Q psy7411 424 LGLCP---------QYDLL--FEE----LTVEDHLQFFA 447 (474)
Q Consensus 424 IG~~~---------Q~~~L--~~~----LTV~E~L~~~~ 447 (474)
+|+.+ |++.. +.+ +|+.+++.+..
T Consensus 221 ~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~ 259 (418)
T 1p9r_A 221 VDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASL 259 (418)
T ss_dssp GTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHH
T ss_pred cCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHH
Confidence 56544 87654 233 68999998764
No 97
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.71 E-value=2.3e-10 Score=110.52 Aligned_cols=74 Identities=26% Similarity=0.314 Sum_probs=50.3
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcc---------hH
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYE---------MG 418 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~---------~~ 418 (474)
.++++|+.+.+ +. ++++.+ ++++|+||||||||||+++|+|++.|++|+|.++|.++... ..
T Consensus 9 ~l~l~~~~~~~-~~-------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (227)
T 1qhl_A 9 SLTLINWNGFF-AR-------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHG 79 (227)
T ss_dssp EEEEEEETTEE-EE-------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------CGG
T ss_pred EEEEEeeeccc-CC-------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccchhh
Confidence 46777876655 21 445555 89999999999999999999999999999999999887311 11
Q ss_pred HhhcceEEEcCC
Q psy7411 419 KVRESLGLCPQY 430 (474)
Q Consensus 419 ~ir~~IG~~~Q~ 430 (474)
.+++.+++++|.
T Consensus 80 ~~~~~i~~v~~~ 91 (227)
T 1qhl_A 80 KLKAGVCYSMLD 91 (227)
T ss_dssp GBCSSEEEEEEE
T ss_pred HhhcCcEEEEEe
Confidence 245679999974
No 98
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.71 E-value=4.6e-09 Score=115.50 Aligned_cols=52 Identities=23% Similarity=0.303 Sum_probs=43.9
Q ss_pred ceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhh----------------------cCCCCCCeeEEEECCeecC
Q psy7411 362 KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSML----------------------TGLIIPTSGTAYIDGHDIW 414 (474)
Q Consensus 362 ~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L----------------------~GL~~PtsG~i~i~G~dI~ 414 (474)
+.+|+++||++++||+++|+||||||||||++++ .|+.+++ |.+.+++.++.
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~~-~~i~~~~~~~~ 408 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLD-KVIDIDQSPIG 408 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGCS-EEEECCSSCSC
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhcccccccccccccccccC-ceeEeccccCC
Confidence 4689999999999999999999999999999874 4555554 68888887764
No 99
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.68 E-value=1.2e-09 Score=102.19 Aligned_cols=53 Identities=23% Similarity=0.297 Sum_probs=46.6
Q ss_pred CcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEEEcCC
Q psy7411 375 NQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQY 430 (474)
Q Consensus 375 Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~~Q~ 430 (474)
|++++++||||||||||+++|+|+++ ++| +.++|.++. +....++++|+++|+
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~-~~~~~~~~ig~~~~~ 53 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTE-EVRQGGRRIGFDVVT 53 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECC-EEETTSSEEEEEEEE
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecc-hhHhhhceEEEEEEe
Confidence 78999999999999999999999999 999 999998874 334567789999997
No 100
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.67 E-value=8.6e-10 Score=102.59 Aligned_cols=80 Identities=11% Similarity=0.031 Sum_probs=56.0
Q ss_pred eeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEEEcCCCCCCCCCCHHHHH
Q psy7411 364 AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHL 443 (474)
Q Consensus 364 aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~~Q~~~L~~~LTV~E~L 443 (474)
.+.+..++.++|++++|+|||||||||++++|++.+ |.+.+++.++.......+...|+++|+....+.+++.+++
T Consensus 18 ~~~~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 93 (200)
T 4eun_A 18 LYFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAEW 93 (200)
T ss_dssp ----------CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred hHHHhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHHH
Confidence 333334667789999999999999999999999976 8899998887543222333578899987777777888887
Q ss_pred HHHH
Q psy7411 444 QFFA 447 (474)
Q Consensus 444 ~~~~ 447 (474)
....
T Consensus 94 ~~~~ 97 (200)
T 4eun_A 94 MDAR 97 (200)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 101
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.64 E-value=1.7e-09 Score=106.02 Aligned_cols=62 Identities=24% Similarity=0.252 Sum_probs=51.3
Q ss_pred eeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCC-eeEEEECCeecCcchHHhhcceEEEcC
Q psy7411 363 KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPT-SGTAYIDGHDIWYEMGKVRESLGLCPQ 429 (474)
Q Consensus 363 ~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~Pt-sG~i~i~G~dI~~~~~~ir~~IG~~~Q 429 (474)
+++++++ +++|++++++||||||||||+++|+|+++|+ +|+|.+.|.++.... +..+++++|
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~---~~~~~~v~q 77 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF---KHKKSIVNQ 77 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC---CCSSSEEEE
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec---CCcceeeeH
Confidence 4788888 8999999999999999999999999999998 999999988764211 223456666
No 102
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.63 E-value=9.9e-09 Score=109.95 Aligned_cols=51 Identities=20% Similarity=0.332 Sum_probs=47.8
Q ss_pred ceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCee
Q psy7411 362 KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHD 412 (474)
Q Consensus 362 ~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~d 412 (474)
..+++++++.+++|++++++||||||||||+++|+|+++|++|.+.+.|.+
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~ 297 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTR 297 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSC
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcc
Confidence 357889999999999999999999999999999999999999999998865
No 103
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.62 E-value=1.4e-08 Score=94.49 Aligned_cols=54 Identities=19% Similarity=0.212 Sum_probs=44.9
Q ss_pred EeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEEEcCCCCCC--CCCCHHHHHHHH
Q psy7411 372 MYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLF--EELTVEDHLQFF 446 (474)
Q Consensus 372 i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~~Q~~~L~--~~LTV~E~L~~~ 446 (474)
.++|++++|+|||||||||++++|+|+++| .+++++|++.++ ..+++.+++.+.
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~---------------------~i~~v~~d~~~~~~~~~~~~~~~~~~ 58 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE---------------------RVALLPMDHYYKDLGHLPLEERLRVN 58 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG---------------------GEEEEEGGGCBCCCTTSCHHHHHHSC
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC---------------------CeEEEecCccccCcccccHHHhcCCC
Confidence 578999999999999999999999998765 478999988776 567898887653
No 104
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.60 E-value=1.1e-08 Score=93.14 Aligned_cols=44 Identities=27% Similarity=0.489 Sum_probs=36.9
Q ss_pred eeeeEEeCCcEEEEeCCCCCChhHHHH------------hhcCCCCCCeeEEEECC
Q psy7411 367 NLTLDMYQNQITVLLGHNGAGKSTTMS------------MLTGLIIPTSGTAYIDG 410 (474)
Q Consensus 367 ~lsL~i~~Gei~gLLGpNGAGKTTLL~------------~L~GL~~PtsG~i~i~G 410 (474)
++||++++||+++++||||||||||++ .+.|+..++.|...+.+
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~~g~~~~~~~~~~~~~ 56 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLMSDDENDQTVTG 56 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGGEEEHHHHHHHHCSSTTCGGGHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCeEEccHHHHHHhcCcccchhhHH
Confidence 689999999999999999999999999 66777777766554443
No 105
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.57 E-value=1.3e-08 Score=96.51 Aligned_cols=37 Identities=22% Similarity=0.143 Sum_probs=22.9
Q ss_pred eeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhc-CCC
Q psy7411 363 KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLT-GLI 399 (474)
Q Consensus 363 ~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~-GL~ 399 (474)
+-.+++||++++|++++|+|||||||||++++|+ |+.
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4678999999999999999999999999999999 998
No 106
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.54 E-value=8.3e-09 Score=95.06 Aligned_cols=56 Identities=18% Similarity=0.243 Sum_probs=37.0
Q ss_pred EEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCC-----CCCeeEEEE
Q psy7411 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLI-----IPTSGTAYI 408 (474)
Q Consensus 349 I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~-----~PtsG~i~i 408 (474)
++++|+++.|+ ..++++ |.+.+|+.++++|+||+|||||++.|+|.. .|+.|++..
T Consensus 4 l~~~~~~~~~~--~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~ 64 (210)
T 1pui_A 4 LNYQQTHFVMS--APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQL 64 (210)
T ss_dssp -------CEEE--ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CC
T ss_pred hhhhhhhheee--cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCcccee
Confidence 68899999994 367777 889999999999999999999999999998 888887764
No 107
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.53 E-value=4.9e-08 Score=110.09 Aligned_cols=47 Identities=32% Similarity=0.499 Sum_probs=40.9
Q ss_pred ccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHh-hcCCC
Q psy7411 347 SGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSM-LTGLI 399 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~-L~GL~ 399 (474)
..++++++++ .+|+++||++++||+++++|+||||||||+++ |+|+.
T Consensus 501 ~~L~v~~l~~------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l 548 (842)
T 2vf7_A 501 GWLELNGVTR------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDAL 548 (842)
T ss_dssp CEEEEEEEEE------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHH
T ss_pred ceEEEEeeee------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHH
Confidence 4588999864 26999999999999999999999999999997 77543
No 108
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.48 E-value=7.9e-09 Score=94.62 Aligned_cols=65 Identities=23% Similarity=0.248 Sum_probs=49.9
Q ss_pred CcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEEEcCCCCCCCCCCHHHHHHHHH
Q psy7411 375 NQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFA 447 (474)
Q Consensus 375 Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~~Q~~~L~~~LTV~E~L~~~~ 447 (474)
|++++|+|||||||||++++|++ |.+|.+.++|.++... ...|+++|.....+.+++++++....
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~ 66 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM-----VVGGYRPPWESDELLALTWKNITDLT 66 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT-----CCTTCCCGGGCHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh-----hccccccCccchhHHHHHHHHHHHHH
Confidence 68999999999999999999987 6789999988655321 23567777655555668888887654
No 109
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.44 E-value=5.7e-10 Score=112.44 Aligned_cols=94 Identities=19% Similarity=0.240 Sum_probs=70.2
Q ss_pred EEEeeEEEEcCCceeeeeeeeEEeCC-------cEEEEeCCCCCChhHHHHhhcCCC----CCCeeEEEECCeecCcchH
Q psy7411 350 QLRGLTKIYKTGKKAVDNLTLDMYQN-------QITVLLGHNGAGKSTTMSMLTGLI----IPTSGTAYIDGHDIWYEMG 418 (474)
Q Consensus 350 ~i~~Lsk~y~~~~~aL~~lsL~i~~G-------ei~gLLGpNGAGKTTLL~~L~GL~----~PtsG~i~i~G~dI~~~~~ 418 (474)
+.+++++.| +...+++++++.+.+| +.++|.||||+|||||+++++|.. .|++|.+...+.++.....
T Consensus 20 r~~~l~~~~-g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~ 98 (334)
T 1in4_A 20 RPKSLDEFI-GQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILT 98 (334)
T ss_dssp SCSSGGGCC-SCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHH
T ss_pred CCccHHHcc-CcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHH
Confidence 344555666 4567889999988776 889999999999999999999987 6777777666655432222
Q ss_pred Hh-hcceEEEcCCCCCCCCCCHHHHHHHH
Q psy7411 419 KV-RESLGLCPQYDLLFEELTVEDHLQFF 446 (474)
Q Consensus 419 ~i-r~~IG~~~Q~~~L~~~LTV~E~L~~~ 446 (474)
.. ++.++++.|.+.+.+ ++.|++...
T Consensus 99 ~~~~~~v~~iDE~~~l~~--~~~e~L~~~ 125 (334)
T 1in4_A 99 SLERGDVLFIDEIHRLNK--AVEELLYSA 125 (334)
T ss_dssp HCCTTCEEEEETGGGCCH--HHHHHHHHH
T ss_pred HccCCCEEEEcchhhcCH--HHHHHHHHH
Confidence 22 456999999888876 788888544
No 110
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.43 E-value=7.2e-08 Score=109.67 Aligned_cols=44 Identities=18% Similarity=0.348 Sum_probs=38.3
Q ss_pred ccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhc
Q psy7411 347 SGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLT 396 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~ 396 (474)
..++++++++ .+|+++||++++||+++|+|+||||||||++++.
T Consensus 628 ~~L~v~~l~~------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll 671 (972)
T 2r6f_A 628 RWLEVVGARE------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 671 (972)
T ss_dssp CEEEEEEECS------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTH
T ss_pred eEEEEecCcc------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHH
Confidence 3578888752 3799999999999999999999999999999864
No 111
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.42 E-value=9.3e-09 Score=105.76 Aligned_cols=61 Identities=25% Similarity=0.246 Sum_probs=50.0
Q ss_pred eeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCC-eeEEEECCeecCcchHHhhcceEEEcC
Q psy7411 364 AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPT-SGTAYIDGHDIWYEMGKVRESLGLCPQ 429 (474)
Q Consensus 364 aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~Pt-sG~i~i~G~dI~~~~~~ir~~IG~~~Q 429 (474)
++++++ +++|++++++||||||||||+++|+|+++|+ +|+|...+.++.. ..++.+++++|
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~---~~~~~~~~v~Q 188 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEY---VFKHKKSIVNQ 188 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCS---CCCCSSSEEEE
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhh---hhccCceEEEe
Confidence 455544 7899999999999999999999999999998 8999877655531 24567899999
No 112
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.41 E-value=3.3e-09 Score=97.70 Aligned_cols=35 Identities=23% Similarity=0.220 Sum_probs=29.9
Q ss_pred eEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCee
Q psy7411 370 LDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSG 404 (474)
Q Consensus 370 L~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG 404 (474)
+++++|++++|+|||||||||++++|+++..|+.|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 46789999999999999999999999999877666
No 113
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.40 E-value=8.4e-09 Score=98.89 Aligned_cols=70 Identities=21% Similarity=0.190 Sum_probs=55.3
Q ss_pred CCcEEEEeCCCCCChhHHHHhhc---CCCCCCeeEEEECCeecCcchHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q psy7411 374 QNQITVLLGHNGAGKSTTMSMLT---GLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFF 446 (474)
Q Consensus 374 ~Gei~gLLGpNGAGKTTLL~~L~---GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~~Q~~~L~~~LTV~E~L~~~ 446 (474)
++++++|+|||||||||++++|+ |+..|++|++.++|.+... ...+.++.++|+..+++..++.+++...
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~v~~~l~~~ 98 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAST---EVGEMAKQYIEKSLLVPDHVITRLMMSE 98 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTC---HHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCC---hHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 47999999999999999999999 9999999998877654321 2233345567777788888999999763
No 114
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=98.37 E-value=8e-08 Score=110.58 Aligned_cols=54 Identities=24% Similarity=0.338 Sum_probs=42.7
Q ss_pred ccEEEEe-----eEEEEcCCceeeeeeeeEEeC-------CcEEEEeCCCCCChhHHHHhhcCCCCC
Q psy7411 347 SGIQLRG-----LTKIYKTGKKAVDNLTLDMYQ-------NQITVLLGHNGAGKSTTMSMLTGLIIP 401 (474)
Q Consensus 347 ~~I~i~~-----Lsk~y~~~~~aL~~lsL~i~~-------Gei~gLLGpNGAGKTTLL~~L~GL~~P 401 (474)
..+++++ |++.|.+++.+++|++|++.+ |++++|+|||||||||+||++ |+..+
T Consensus 749 ~~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~ 814 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV 814 (1022)
T ss_dssp CCEEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH
T ss_pred ceEEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH
Confidence 3589999 999984456899999999987 999999999999999999999 98753
No 115
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.34 E-value=7.2e-09 Score=105.59 Aligned_cols=66 Identities=18% Similarity=0.253 Sum_probs=50.1
Q ss_pred eeeeeeEEeC--CcEEEEeCCCCCChhHHHHhhcCCCCCCe----eEEEEC----CeecCcchHHhhcceEEEcCCC
Q psy7411 365 VDNLTLDMYQ--NQITVLLGHNGAGKSTTMSMLTGLIIPTS----GTAYID----GHDIWYEMGKVRESLGLCPQYD 431 (474)
Q Consensus 365 L~~lsL~i~~--Gei~gLLGpNGAGKTTLL~~L~GL~~Pts----G~i~i~----G~dI~~~~~~ir~~IG~~~Q~~ 431 (474)
.+.+++++++ |+.++|+||||||||||+++|+|+++|++ |++.++ |.++.....++ +++++++|..
T Consensus 158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~~~~~~~~-~~I~~~~q~~ 233 (365)
T 1lw7_A 158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDY-PQMALGHQRY 233 (365)
T ss_dssp GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTTSSCTTTH-HHHHHHHHHH
T ss_pred hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcccCChhHH-HHHHHHHHHH
Confidence 4679999999 99999999999999999999999999999 888763 43332122222 3366666543
No 116
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.33 E-value=1.7e-08 Score=99.19 Aligned_cols=49 Identities=16% Similarity=0.133 Sum_probs=43.9
Q ss_pred ceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCee-EEEECC
Q psy7411 362 KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSG-TAYIDG 410 (474)
Q Consensus 362 ~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG-~i~i~G 410 (474)
.++|+++++.+++|++++|+||||+|||||+++|+|...|++| .+.+.+
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 3589999999999999999999999999999999999999878 665543
No 117
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.32 E-value=6.7e-08 Score=89.31 Aligned_cols=50 Identities=14% Similarity=0.075 Sum_probs=35.3
Q ss_pred EEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcch-HHhhcceEEEcCCC
Q psy7411 377 ITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEM-GKVRESLGLCPQYD 431 (474)
Q Consensus 377 i~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~-~~ir~~IG~~~Q~~ 431 (474)
.++|+||||||||||+++|+|+++ +.++|.+..... ...++.+|+++|+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~ 52 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT 52 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC
Confidence 579999999999999999999985 455665542211 14467799999874
No 118
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.31 E-value=1.7e-07 Score=107.01 Aligned_cols=44 Identities=18% Similarity=0.328 Sum_probs=38.3
Q ss_pred ccEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhc
Q psy7411 347 SGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLT 396 (474)
Q Consensus 347 ~~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~ 396 (474)
..++++++++ .+|+++||++++||+++|+|+||||||||++++.
T Consensus 646 ~~L~v~~l~~------~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il 689 (993)
T 2ygr_A 646 RQLTVVGARE------HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDIL 689 (993)
T ss_dssp SEEEEEEECS------TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTH
T ss_pred ceEEEecCcc------ccccCceEEECCCCEEEEEcCCCCCHHHHHHHHH
Confidence 3578888752 3699999999999999999999999999999853
No 119
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.31 E-value=4.8e-09 Score=103.26 Aligned_cols=80 Identities=14% Similarity=0.093 Sum_probs=58.4
Q ss_pred CceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc-chHHhhcceEEEcCCC-CCCCCCC
Q psy7411 361 GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY-EMGKVRESLGLCPQYD-LLFEELT 438 (474)
Q Consensus 361 ~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~-~~~~ir~~IG~~~Q~~-~L~~~LT 438 (474)
...+++++++++++| ++|.||||+|||||+++|+|...+ |.+.++|.++.. ...+.++.+++++|.. ...+.++
T Consensus 32 ~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~ 107 (274)
T 2x8a_A 32 NPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVI 107 (274)
T ss_dssp SHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEE
T ss_pred CHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeE
Confidence 356889999999999 999999999999999999999877 799999988753 2233344566666653 2333344
Q ss_pred HHHHHH
Q psy7411 439 VEDHLQ 444 (474)
Q Consensus 439 V~E~L~ 444 (474)
+.|++.
T Consensus 108 ~~Deid 113 (274)
T 2x8a_A 108 FFDEVD 113 (274)
T ss_dssp EEETCT
T ss_pred eeehhh
Confidence 444443
No 120
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=98.29 E-value=3.8e-08 Score=90.74 Aligned_cols=59 Identities=15% Similarity=0.268 Sum_probs=43.4
Q ss_pred cEEEEeCCCCCChhHHHHhhcCCCCCC---eeEEEECCeecCc-c---hHHhh-cceE----EEcCCCCCC
Q psy7411 376 QITVLLGHNGAGKSTTMSMLTGLIIPT---SGTAYIDGHDIWY-E---MGKVR-ESLG----LCPQYDLLF 434 (474)
Q Consensus 376 ei~gLLGpNGAGKTTLL~~L~GL~~Pt---sG~i~i~G~dI~~-~---~~~ir-~~IG----~~~Q~~~L~ 434 (474)
++++++|+||||||||++.|+|+++|+ .|.|.++|.++.. + .+..| +.+| +++|+..++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~ 73 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF 73 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE
Confidence 589999999999999999999999998 9999999988542 1 34555 4577 888876655
No 121
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.29 E-value=1.6e-07 Score=87.76 Aligned_cols=43 Identities=26% Similarity=0.311 Sum_probs=38.3
Q ss_pred EeCCcEEEEeCCCCCChhHHHHhhcCCCCC---CeeEEEECCeecC
Q psy7411 372 MYQNQITVLLGHNGAGKSTTMSMLTGLIIP---TSGTAYIDGHDIW 414 (474)
Q Consensus 372 i~~Gei~gLLGpNGAGKTTLL~~L~GL~~P---tsG~i~i~G~dI~ 414 (474)
.++|++++|+||||||||||+++|+|+++| +.|.+..+|..+.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~ 64 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLD 64 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCC
Confidence 478999999999999999999999999985 5899999887653
No 122
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.29 E-value=1.2e-07 Score=95.59 Aligned_cols=82 Identities=16% Similarity=0.137 Sum_probs=66.7
Q ss_pred eeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcch-----HHh-----hcceEEE-cCCCCC
Q psy7411 365 VDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEM-----GKV-----RESLGLC-PQYDLL 433 (474)
Q Consensus 365 L~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~-----~~i-----r~~IG~~-~Q~~~L 433 (474)
+++++|+..+|++++++|+||+||||++..|++.+.+..|++.+.+.|+.+.. ..+ +..++++ +|....
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~ 174 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNA 174 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTC
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCC
Confidence 36788889999999999999999999999999999999999999988886421 223 4568999 777666
Q ss_pred CCCCCHHHHHHHH
Q psy7411 434 FEELTVEDHLQFF 446 (474)
Q Consensus 434 ~~~LTV~E~L~~~ 446 (474)
.+..++.+++...
T Consensus 175 ~p~~~~~~~l~~~ 187 (320)
T 1zu4_A 175 DPASVVFDAIKKA 187 (320)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 6666778888764
No 123
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=98.28 E-value=1.7e-08 Score=101.39 Aligned_cols=69 Identities=19% Similarity=0.116 Sum_probs=52.4
Q ss_pred cEEEEeCCCCCChhHHHHhhcCCC--------CCCeeEEEECCeecCcc----------------hHHhhcceEEE---c
Q psy7411 376 QITVLLGHNGAGKSTTMSMLTGLI--------IPTSGTAYIDGHDIWYE----------------MGKVRESLGLC---P 428 (474)
Q Consensus 376 ei~gLLGpNGAGKTTLL~~L~GL~--------~PtsG~i~i~G~dI~~~----------------~~~ir~~IG~~---~ 428 (474)
++++|+|+||||||||++.|.|+. .|+.|++.++|.++... ..+.++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 689999999999999999999987 88999999999887532 12344556666 5
Q ss_pred CCCCCCCCCCHHHHHH
Q psy7411 429 QYDLLFEELTVEDHLQ 444 (474)
Q Consensus 429 Q~~~L~~~LTV~E~L~ 444 (474)
|+..++.+.++.|++.
T Consensus 85 q~~~~~~~~~v~E~~~ 100 (318)
T 1nij_A 85 DKGNIQFDRLVIECTG 100 (318)
T ss_dssp HHTSCCCSEEEEEEET
T ss_pred hcCCCCCCEEEEeCCC
Confidence 7665555666666553
No 124
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.27 E-value=7.4e-08 Score=90.67 Aligned_cols=59 Identities=22% Similarity=0.278 Sum_probs=45.5
Q ss_pred EEeCCcEEEEeCCCCCChhHHHHhhcC--CCCC-----CeeEEEECCeecC--cchHHhhcceEEEcC
Q psy7411 371 DMYQNQITVLLGHNGAGKSTTMSMLTG--LIIP-----TSGTAYIDGHDIW--YEMGKVRESLGLCPQ 429 (474)
Q Consensus 371 ~i~~Gei~gLLGpNGAGKTTLL~~L~G--L~~P-----tsG~i~i~G~dI~--~~~~~ir~~IG~~~Q 429 (474)
.+++|++++|+||||+|||||++.+++ +.+| ..|.+++++++.. ....+.++.+|+.+|
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~ 87 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGS 87 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHH
Confidence 478999999999999999999999999 5665 6789999987732 223334445666664
No 125
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.26 E-value=2e-08 Score=102.37 Aligned_cols=79 Identities=24% Similarity=0.334 Sum_probs=61.1
Q ss_pred ceeeeee-eeEEeCCcEEEEeCCCCCChhHHHHhhcCCC--CCCe----eE-EEECCeecCcchHHhhcceEEEcCCCCC
Q psy7411 362 KKAVDNL-TLDMYQNQITVLLGHNGAGKSTTMSMLTGLI--IPTS----GT-AYIDGHDIWYEMGKVRESLGLCPQYDLL 433 (474)
Q Consensus 362 ~~aL~~l-sL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~--~Pts----G~-i~i~G~dI~~~~~~ir~~IG~~~Q~~~L 433 (474)
.+.||.+ +..+++|++++|+||||||||||++.+++.. +|++ |. +++++++.. .++++++++|...+
T Consensus 117 ~~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~-----~~~~i~~i~q~~~~ 191 (349)
T 1pzn_A 117 SKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF-----RPERIREIAQNRGL 191 (349)
T ss_dssp CHHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC-----CHHHHHHHHHTTTC
T ss_pred CHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC-----CHHHHHHHHHHcCC
Confidence 3456665 6899999999999999999999999999988 6776 67 899887652 13346677787776
Q ss_pred CCCCCHHHHHHHH
Q psy7411 434 FEELTVEDHLQFF 446 (474)
Q Consensus 434 ~~~LTV~E~L~~~ 446 (474)
++. ++.||+.+.
T Consensus 192 ~~~-~v~~ni~~~ 203 (349)
T 1pzn_A 192 DPD-EVLKHIYVA 203 (349)
T ss_dssp CHH-HHGGGEEEE
T ss_pred CHH-HHhhCEEEE
Confidence 655 777776554
No 126
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.26 E-value=5.2e-08 Score=109.01 Aligned_cols=82 Identities=18% Similarity=0.234 Sum_probs=54.7
Q ss_pred cEEEEeeEEEE-c-CCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCC-CCeeEEEECCeecCcchHHhhcce
Q psy7411 348 GIQLRGLTKIY-K-TGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLII-PTSGTAYIDGHDIWYEMGKVRESL 424 (474)
Q Consensus 348 ~I~i~~Lsk~y-~-~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~-PtsG~i~i~G~dI~~~~~~ir~~I 424 (474)
.+++++...-. + +++.+++|++|+ |++++|+|||||||||++|+++|+.. |+.|.+. . ..+..+
T Consensus 550 ~i~i~~~rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v------p----a~~~~i 616 (765)
T 1ewq_A 550 RLQIRAGRHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV------P----AEEAHL 616 (765)
T ss_dssp SEEEEEECCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB------S----SSEEEE
T ss_pred cEEEEEeECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee------e----hhccce
Confidence 35666542211 1 235789999999 99999999999999999999999874 6767532 1 113457
Q ss_pred EEEcCCCCCCCCCCHHHHHHH
Q psy7411 425 GLCPQYDLLFEELTVEDHLQF 445 (474)
Q Consensus 425 G~~~Q~~~L~~~LTV~E~L~~ 445 (474)
|+++| +++.+++.||+..
T Consensus 617 ~~v~~---i~~~~~~~d~l~~ 634 (765)
T 1ewq_A 617 PLFDG---IYTRIGASDDLAG 634 (765)
T ss_dssp CCCSE---EEEECCC------
T ss_pred eeHHH---hhccCCHHHHHHh
Confidence 88776 5677788888754
No 127
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.25 E-value=9.6e-08 Score=92.47 Aligned_cols=59 Identities=22% Similarity=0.204 Sum_probs=51.4
Q ss_pred eCCcEEEEeCCCCCChhHHHHhhc---CCCCCCeeEEE--------ECCeecCc--chHHhhcceEEEcCCC
Q psy7411 373 YQNQITVLLGHNGAGKSTTMSMLT---GLIIPTSGTAY--------IDGHDIWY--EMGKVRESLGLCPQYD 431 (474)
Q Consensus 373 ~~Gei~gLLGpNGAGKTTLL~~L~---GL~~PtsG~i~--------i~G~dI~~--~~~~ir~~IG~~~Q~~ 431 (474)
.+|++++|+|||||||||++++|+ |+..|++|.+. .+|.++.. ...++++.+|+++|.+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 96 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQ 96 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecC
Confidence 689999999999999999999999 99999999999 88888742 4566778899999753
No 128
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.25 E-value=2.9e-07 Score=92.27 Aligned_cols=68 Identities=18% Similarity=0.341 Sum_probs=50.4
Q ss_pred eeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCC----------------------------------------------
Q psy7411 366 DNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLI---------------------------------------------- 399 (474)
Q Consensus 366 ~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~---------------------------------------------- 399 (474)
+++++++.+| +++|+|+|||||||++.+|..+.
T Consensus 16 ~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~ 94 (322)
T 1e69_A 16 RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVA 94 (322)
T ss_dssp SCEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEE
T ss_pred CCeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEE
Confidence 3567888888 99999999999999999998443
Q ss_pred ----CCCeeEEEECCeecCc-chHHhhcceEEEcCCCCCC
Q psy7411 400 ----IPTSGTAYIDGHDIWY-EMGKVRESLGLCPQYDLLF 434 (474)
Q Consensus 400 ----~PtsG~i~i~G~dI~~-~~~~ir~~IG~~~Q~~~L~ 434 (474)
++.+|.+.++|.++.. +.....+.+|+.||+..+.
T Consensus 95 r~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv 134 (322)
T 1e69_A 95 RELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIV 134 (322)
T ss_dssp EEEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEE
T ss_pred EEEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeE
Confidence 3345788899988742 3444455677777765544
No 129
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.24 E-value=1.4e-07 Score=87.96 Aligned_cols=39 Identities=38% Similarity=0.443 Sum_probs=30.6
Q ss_pred eCCcEEEEeCCCCCChhHHHHhhcCCCC-------------CCeeEEEECCeec
Q psy7411 373 YQNQITVLLGHNGAGKSTTMSMLTGLII-------------PTSGTAYIDGHDI 413 (474)
Q Consensus 373 ~~Gei~gLLGpNGAGKTTLL~~L~GL~~-------------PtsG~i~i~G~dI 413 (474)
++|++++|+||||||||||+++|+|+++ |..|+ ++|.++
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~ 53 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDY 53 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTB
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceE
Confidence 5799999999999999999999999875 66775 466554
No 130
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.23 E-value=1.7e-07 Score=86.16 Aligned_cols=26 Identities=31% Similarity=0.358 Sum_probs=24.8
Q ss_pred CcEEEEeCCCCCChhHHHHhhcCCCC
Q psy7411 375 NQITVLLGHNGAGKSTTMSMLTGLII 400 (474)
Q Consensus 375 Gei~gLLGpNGAGKTTLL~~L~GL~~ 400 (474)
|++++|+|||||||||++++|+|+++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 67899999999999999999999998
No 131
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.20 E-value=3.5e-09 Score=103.34 Aligned_cols=93 Identities=12% Similarity=0.120 Sum_probs=68.0
Q ss_pred EEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcc-hHHhhcceEEEc
Q psy7411 350 QLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYE-MGKVRESLGLCP 428 (474)
Q Consensus 350 ~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~-~~~ir~~IG~~~ 428 (474)
+++++.+.| +...+++++++++++| +.|+||||+|||||+++|++... .|.+.+++.++... ....++.++.++
T Consensus 51 ~l~~l~~~~-~~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~~ 125 (278)
T 1iy2_A 51 ELKEIVEFL-KNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLF 125 (278)
T ss_dssp HHHHHHHHH-HCHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHHHH
T ss_pred HHHHHHHHH-HCHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHHHH
Confidence 345666666 3467899999999999 88999999999999999999875 78999988765321 122234466677
Q ss_pred CCCC-CCCCCCHHHHHHHHH
Q psy7411 429 QYDL-LFEELTVEDHLQFFA 447 (474)
Q Consensus 429 Q~~~-L~~~LTV~E~L~~~~ 447 (474)
|... ..+.+++.|++....
T Consensus 126 ~~~~~~~~~i~~iDeid~l~ 145 (278)
T 1iy2_A 126 ETAKRHAPCIVFIDEIDAVG 145 (278)
T ss_dssp HHHHTSCSEEEEEETHHHHH
T ss_pred HHHHhcCCcEEehhhhHhhh
Confidence 7642 456677778886554
No 132
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.19 E-value=4.1e-09 Score=101.16 Aligned_cols=94 Identities=12% Similarity=0.128 Sum_probs=67.7
Q ss_pred EEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcc-hHHhhcceEEEc
Q psy7411 350 QLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYE-MGKVRESLGLCP 428 (474)
Q Consensus 350 ~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~-~~~ir~~IG~~~ 428 (474)
+++++.+.| +...+++++++++++| +.|+||||+|||||++++++... .|.+.+++.++... ....++.++.++
T Consensus 27 ~l~~l~~~~-~~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~~ 101 (254)
T 1ixz_A 27 ELKEIVEFL-KNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLF 101 (254)
T ss_dssp HHHHHHHHH-HCHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHHHHH
T ss_pred HHHHHHHHH-HCHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHHHHH
Confidence 345666666 3457899999999999 88999999999999999999875 78899988765321 122234466677
Q ss_pred CCC-CCCCCCCHHHHHHHHHh
Q psy7411 429 QYD-LLFEELTVEDHLQFFAK 448 (474)
Q Consensus 429 Q~~-~L~~~LTV~E~L~~~~~ 448 (474)
|.. ...+.+++.|++.....
T Consensus 102 ~~~~~~~~~i~~~Deid~l~~ 122 (254)
T 1ixz_A 102 ETAKRHAPCIVFIDEIDAVGR 122 (254)
T ss_dssp HHHTTSSSEEEEEETHHHHHC
T ss_pred HHHHhcCCeEEEehhhhhhhc
Confidence 763 34566777788855543
No 133
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.17 E-value=7.3e-07 Score=80.79 Aligned_cols=42 Identities=21% Similarity=0.319 Sum_probs=36.7
Q ss_pred eee--eeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeE
Q psy7411 363 KAV--DNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGT 405 (474)
Q Consensus 363 ~aL--~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~ 405 (474)
..+ +++++++.+| +++|+|||||||||++++|.+++.+++|.
T Consensus 13 ~~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~ 56 (182)
T 3kta_A 13 KSYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAK 56 (182)
T ss_dssp GGGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTG
T ss_pred EeecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCccc
Confidence 355 7888999998 99999999999999999999988876654
No 134
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.16 E-value=1e-07 Score=93.04 Aligned_cols=52 Identities=13% Similarity=0.246 Sum_probs=35.7
Q ss_pred cEEEEee-EEEEcCCceeeeeeeeEEeC---CcEEEEeCCCCCChhHHHHhhcCCC
Q psy7411 348 GIQLRGL-TKIYKTGKKAVDNLTLDMYQ---NQITVLLGHNGAGKSTTMSMLTGLI 399 (474)
Q Consensus 348 ~I~i~~L-sk~y~~~~~aL~~lsL~i~~---Gei~gLLGpNGAGKTTLL~~L~GL~ 399 (474)
.++++|+ ++.|++.+++|+++||++++ |++++|+|++||||||+.++|++.+
T Consensus 17 ~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ---------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5789999 99994456899999999999 9999999999999999999998743
No 135
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.15 E-value=1.2e-06 Score=99.71 Aligned_cols=31 Identities=19% Similarity=0.428 Sum_probs=29.3
Q ss_pred ceeeeeeeeEEeCCcEEEEeCCCCCChhHHH
Q psy7411 362 KKAVDNLTLDMYQNQITVLLGHNGAGKSTTM 392 (474)
Q Consensus 362 ~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL 392 (474)
...|+++||++++|++++|+|+||||||||+
T Consensus 597 ~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl 627 (916)
T 3pih_A 597 HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLV 627 (916)
T ss_dssp STTCCSEEEEEESSSEEEEECSTTSSHHHHH
T ss_pred cccccccceEEcCCcEEEEEccCCCChhhhH
Confidence 3579999999999999999999999999997
No 136
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.14 E-value=5.8e-08 Score=90.12 Aligned_cols=61 Identities=21% Similarity=0.287 Sum_probs=46.7
Q ss_pred EeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEE--EECCeecC
Q psy7411 352 RGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTA--YIDGHDIW 414 (474)
Q Consensus 352 ~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i--~i~G~dI~ 414 (474)
+|+++.+ +...+.++.++..++|++++|+|||||||||++++|++.+. .+|.+ .++|.++.
T Consensus 3 ~~~~~~~-~~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 3 TNIKWHE-CSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVR 65 (200)
T ss_dssp --------CCCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHT
T ss_pred CCCcccc-cccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhh
Confidence 3566666 45667788888889999999999999999999999999887 67877 88877664
No 137
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.13 E-value=1e-07 Score=88.61 Aligned_cols=53 Identities=17% Similarity=0.142 Sum_probs=45.5
Q ss_pred Cceeeeeeee-EEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeec
Q psy7411 361 GKKAVDNLTL-DMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDI 413 (474)
Q Consensus 361 ~~~aL~~lsL-~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI 413 (474)
+.+.||++.. .+++|++++++||||||||||++.+++...+++|.+.+.+.+.
T Consensus 8 g~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~ 61 (235)
T 2w0m_A 8 GILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE 61 (235)
T ss_dssp SCHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS
T ss_pred CchHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc
Confidence 3567888887 8999999999999999999999999998888888887766544
No 138
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.13 E-value=3.3e-07 Score=93.88 Aligned_cols=81 Identities=17% Similarity=0.195 Sum_probs=54.9
Q ss_pred ceeeeeeee-------EEeCCcEEEEeCCCCCChhHHHHhhcCCCCCC-eeEEEECCeecCcchHHhhcceEEEcCCCCC
Q psy7411 362 KKAVDNLTL-------DMYQNQITVLLGHNGAGKSTTMSMLTGLIIPT-SGTAYIDGHDIWYEMGKVRESLGLCPQYDLL 433 (474)
Q Consensus 362 ~~aL~~lsL-------~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~Pt-sG~i~i~G~dI~~~~~~ir~~IG~~~Q~~~L 433 (474)
...++++++ ...+|++++++||||||||||+++|+|+++|+ +|.+...+.++... .+...++++|....
T Consensus 103 ~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~---~~~~~~~v~q~~~~ 179 (356)
T 3jvv_A 103 VLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFV---HESKKCLVNQREVH 179 (356)
T ss_dssp CCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSC---CCCSSSEEEEEEBT
T ss_pred CCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhh---hhccccceeeeeec
Confidence 345666665 67889999999999999999999999999987 56665443333211 12334566666554
Q ss_pred CCCCCHHHHHHH
Q psy7411 434 FEELTVEDHLQF 445 (474)
Q Consensus 434 ~~~LTV~E~L~~ 445 (474)
...++..+-++-
T Consensus 180 ~~~~~~~~~La~ 191 (356)
T 3jvv_A 180 RDTLGFSEALRS 191 (356)
T ss_dssp TTBSCHHHHHHH
T ss_pred cccCCHHHHHHH
Confidence 455666664443
No 139
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.13 E-value=4.1e-07 Score=94.38 Aligned_cols=73 Identities=18% Similarity=0.063 Sum_probs=53.5
Q ss_pred EEeCCcEEEEeCCCCCChhHHHHhhcC------------CCCCCeeEEEECCeecCcch--HHhhcce---EEEcCCCCC
Q psy7411 371 DMYQNQITVLLGHNGAGKSTTMSMLTG------------LIIPTSGTAYIDGHDIWYEM--GKVRESL---GLCPQYDLL 433 (474)
Q Consensus 371 ~i~~Gei~gLLGpNGAGKTTLL~~L~G------------L~~PtsG~i~i~G~dI~~~~--~~ir~~I---G~~~Q~~~L 433 (474)
++.+|+.+|++|+||+|||||+++|+| ...|++|.+.+.|.++.... .+.++.+ ..+.+.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 457899999999999999999999999 66799999999885542111 1112223 366777777
Q ss_pred CCCCCHHHHH
Q psy7411 434 FEELTVEDHL 443 (474)
Q Consensus 434 ~~~LTV~E~L 443 (474)
.+..+..|++
T Consensus 96 ~~~~s~~e~L 105 (392)
T 1ni3_A 96 TKGASTGVGL 105 (392)
T ss_dssp CCCCCSSSSS
T ss_pred ccCCcHHHHH
Confidence 7776665555
No 140
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.99 E-value=2.6e-07 Score=83.22 Aligned_cols=67 Identities=22% Similarity=0.248 Sum_probs=45.8
Q ss_pred eCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhc-ceEEEcCCCCCCCCCCHHHHHH
Q psy7411 373 YQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRE-SLGLCPQYDLLFEELTVEDHLQ 444 (474)
Q Consensus 373 ~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~-~IG~~~Q~~~L~~~LTV~E~L~ 444 (474)
.+|++++|+|+|||||||++++|++.+ |.+.+++.++... ..+++ ..|+.+|+....+.+++.+++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 73 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLHPR-RNIEKMASGEPLNDDDRKPWLQALNDAA 73 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGCCH-HHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccccch-HHHHHhhcCcCCCccccccHHHHHHHHH
Confidence 468999999999999999999999865 7888888766432 12222 3566666533334445555543
No 141
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.94 E-value=1.1e-07 Score=102.73 Aligned_cols=43 Identities=28% Similarity=0.377 Sum_probs=38.4
Q ss_pred EEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCee-EEE-ECCeec
Q psy7411 371 DMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSG-TAY-IDGHDI 413 (474)
Q Consensus 371 ~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG-~i~-i~G~dI 413 (474)
.+++|++++|+|+|||||||++++|+|++.|++| ++. ++|.++
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 4679999999999999999999999999999987 674 888665
No 142
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.93 E-value=7.9e-07 Score=92.47 Aligned_cols=59 Identities=27% Similarity=0.366 Sum_probs=44.5
Q ss_pred EEeCCcEEEEeCCCCCChhHHHH--hhcCCCCCCee-----EEEECCeecCc--chHHhhcceEEEcC
Q psy7411 371 DMYQNQITVLLGHNGAGKSTTMS--MLTGLIIPTSG-----TAYIDGHDIWY--EMGKVRESLGLCPQ 429 (474)
Q Consensus 371 ~i~~Gei~gLLGpNGAGKTTLL~--~L~GL~~PtsG-----~i~i~G~dI~~--~~~~ir~~IG~~~Q 429 (474)
-+++|+++.|+||||+|||||++ ++.++.+|+.| .+++++++... ...++++++|+.+|
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~ 241 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD 241 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH
Confidence 68999999999999999999999 45678777544 88999887432 23334455776665
No 143
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=97.86 E-value=6.4e-06 Score=93.97 Aligned_cols=44 Identities=18% Similarity=0.272 Sum_probs=39.3
Q ss_pred CceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhh--------cCCCCCCee
Q psy7411 361 GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSML--------TGLIIPTSG 404 (474)
Q Consensus 361 ~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L--------~GL~~PtsG 404 (474)
.+.+++|++|++.+|++++|+|||||||||+||++ .|...|.++
T Consensus 648 ~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~ 699 (934)
T 3thx_A 648 IAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCES 699 (934)
T ss_dssp CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEE
T ss_pred ceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccc
Confidence 35688999999999999999999999999999999 787777654
No 144
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.85 E-value=7.2e-07 Score=84.24 Aligned_cols=31 Identities=26% Similarity=0.314 Sum_probs=26.6
Q ss_pred eEEeCCcEEEEeCCCCCChhHHHHhhcCCCC
Q psy7411 370 LDMYQNQITVLLGHNGAGKSTTMSMLTGLII 400 (474)
Q Consensus 370 L~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~ 400 (474)
+...+|++++|+||||||||||++.|.+..+
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3445899999999999999999999998775
No 145
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.84 E-value=7.8e-06 Score=85.41 Aligned_cols=46 Identities=24% Similarity=0.321 Sum_probs=39.9
Q ss_pred eeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCC-----------CCCCeeEEEECC
Q psy7411 365 VDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGL-----------IIPTSGTAYIDG 410 (474)
Q Consensus 365 L~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL-----------~~PtsG~i~i~G 410 (474)
-++++|+++.|+.++|+|+||||||||+++|+|. ..|+.|.+.+++
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~ 203 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE 203 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC
Confidence 4899999999999999999999999999999998 355666666654
No 146
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.83 E-value=4e-06 Score=76.51 Aligned_cols=35 Identities=20% Similarity=0.142 Sum_probs=29.2
Q ss_pred eCCcEEEEeCCCCCChhHHHHhhcCCCCC-CeeEEE
Q psy7411 373 YQNQITVLLGHNGAGKSTTMSMLTGLIIP-TSGTAY 407 (474)
Q Consensus 373 ~~Gei~gLLGpNGAGKTTLL~~L~GL~~P-tsG~i~ 407 (474)
.+|++++|+||||||||||+++|+++.++ ..|.+.
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~ 38 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIP 38 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeee
Confidence 36899999999999999999999998864 445443
No 147
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=97.80 E-value=6.7e-06 Score=92.47 Aligned_cols=71 Identities=21% Similarity=0.239 Sum_probs=45.9
Q ss_pred CceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCC-CeeEEEECCeecCcchHHhhcceEEEcCCCCCCCCCCH
Q psy7411 361 GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIP-TSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTV 439 (474)
Q Consensus 361 ~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~P-tsG~i~i~G~dI~~~~~~ir~~IG~~~Q~~~L~~~LTV 439 (474)
++.+++|++|+ ++|++++|+|||||||||++|+++|+..+ ..| ..+.. .+..++++.| ++..+++
T Consensus 594 ~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G------~~vpa----~~~~i~~~~~---i~~~~~~ 659 (800)
T 1wb9_A 594 EPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIG------SYVPA----QKVEIGPIDR---IFTRVGA 659 (800)
T ss_dssp SCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTT------CCBSS----SEEEECCCCE---EEEEEC-
T ss_pred Cceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcC------cccch----hcccceeHHH---HHhhCCH
Confidence 45789999999 99999999999999999999999997432 222 11211 1234566555 5666677
Q ss_pred HHHHHH
Q psy7411 440 EDHLQF 445 (474)
Q Consensus 440 ~E~L~~ 445 (474)
.|++..
T Consensus 660 ~d~l~~ 665 (800)
T 1wb9_A 660 ADDLAS 665 (800)
T ss_dssp ------
T ss_pred HHHHHh
Confidence 777654
No 148
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=97.78 E-value=4.3e-06 Score=95.24 Aligned_cols=37 Identities=19% Similarity=0.267 Sum_probs=34.4
Q ss_pred CceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcC
Q psy7411 361 GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 361 ~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~G 397 (474)
++.+++|++|++.+|++++|+|||||||||+||++++
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHH
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHH
Confidence 4578999999999999999999999999999999874
No 149
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=97.78 E-value=9.7e-06 Score=83.10 Aligned_cols=44 Identities=25% Similarity=0.385 Sum_probs=36.7
Q ss_pred EEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcC
Q psy7411 350 QLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 350 ~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~G 397 (474)
.+++|+.. +.+.++++++++.+| +++++||||+||||++++|.+
T Consensus 5 ~i~~L~l~---~~~~~~~~~~~~~~g-~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 5 RLSALSTL---NYRNLAPGTLNFPEG-VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp CEEEEEEE---SBTTCCSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred EEeEEEEe---CccceeeeEEEEcCC-eEEEECCCCCChhHHHHHHHH
Confidence 45555553 234678999999999 999999999999999999997
No 150
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.78 E-value=8.8e-06 Score=75.23 Aligned_cols=40 Identities=23% Similarity=0.177 Sum_probs=24.3
Q ss_pred CCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCC
Q psy7411 360 TGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLI 399 (474)
Q Consensus 360 ~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~ 399 (474)
....+++++||++.+|++++|+|++||||||+.+.|++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 10 GVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp --------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3457899999999999999999999999999999998644
No 151
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.78 E-value=6.2e-06 Score=78.32 Aligned_cols=40 Identities=15% Similarity=0.202 Sum_probs=35.5
Q ss_pred eEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeec
Q psy7411 370 LDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDI 413 (474)
Q Consensus 370 L~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI 413 (474)
.+.++|++++|.|+|||||||++++|+|+ .|++.+.+++.
T Consensus 15 ~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~ 54 (230)
T 2vp4_A 15 AEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPV 54 (230)
T ss_dssp TTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTH
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCH
Confidence 35578999999999999999999999998 68899888765
No 152
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.77 E-value=3.1e-06 Score=82.67 Aligned_cols=53 Identities=26% Similarity=0.382 Sum_probs=48.2
Q ss_pred ccccccCCCceeEEechhhhhhHHHHHHhhCccCCcccccchhccccccceee
Q psy7411 44 IAGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFA 96 (474)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 96 (474)
|+++++|++|+++++|.++.+...++|+++||+||+..+|+.+||.||+.|++
T Consensus 61 l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~ 113 (256)
T 1vpl_A 61 ISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVA 113 (256)
T ss_dssp HTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHH
T ss_pred HhcCCCCCceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHH
Confidence 67889999999999999987766778999999999999999999999998864
No 153
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.76 E-value=4.9e-06 Score=74.46 Aligned_cols=41 Identities=29% Similarity=0.480 Sum_probs=36.0
Q ss_pred CCcEEEEeCCCCCChhHHHHhhcCCCCCCee--EEEECCeecCc
Q psy7411 374 QNQITVLLGHNGAGKSTTMSMLTGLIIPTSG--TAYIDGHDIWY 415 (474)
Q Consensus 374 ~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG--~i~i~G~dI~~ 415 (474)
+|+.++|+||||+|||||++++++..++ +| .+++++.++..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~ 77 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPL 77 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhH
Confidence 8999999999999999999999998877 58 88888776643
No 154
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.76 E-value=1.6e-06 Score=89.56 Aligned_cols=64 Identities=17% Similarity=0.189 Sum_probs=47.5
Q ss_pred ceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEEEcCCCC
Q psy7411 362 KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDL 432 (474)
Q Consensus 362 ~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~~Q~~~ 432 (474)
..+++++++++++|++++++||||+||||++++|+|. .+|.+...+ ... +..+..+|+++|...
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~~~--~~~--~~~~~~lg~~~q~~~ 219 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL---CGGKALNVN--LPL--DRLNFELGVAIDQFL 219 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH---HCCEEECCS--SCT--TTHHHHHGGGTTCSC
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh---cCCcEEEEe--ccc--hhHHHHHHHhcchhH
Confidence 3689999999999999999999999999999999985 367665411 111 122234677777754
No 155
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.74 E-value=8.6e-06 Score=84.60 Aligned_cols=50 Identities=28% Similarity=0.501 Sum_probs=38.0
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCee
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSG 404 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG 404 (474)
.++++|+ +.| +.. . .+++.+|++++++|||||||||++++|+++..|+++
T Consensus 6 ~l~~~~~-~~~-~~~---~--~~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~~~~ 55 (430)
T 1w1w_A 6 GLELSNF-KSY-RGV---T--KVGFGESNFTSIIGPNGSGKSNMMDAISFVLGVRSN 55 (430)
T ss_dssp EEEEESC-SSC-CSE---E--EEECTTCSEEEEECSTTSSHHHHHHHHHHHTTC---
T ss_pred EEEEeCE-EEE-CCc---e--eEEecCCCEEEEECCCCCCHHHHHHHHHhhhccccc
Confidence 4678888 677 332 2 244667999999999999999999999999888663
No 156
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.73 E-value=3.9e-06 Score=77.99 Aligned_cols=43 Identities=14% Similarity=0.057 Sum_probs=37.5
Q ss_pred EEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeec
Q psy7411 371 DMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDI 413 (474)
Q Consensus 371 ~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI 413 (474)
...+|+++++.|+|||||||++++|++++++.+|.+.+.+.|.
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD 60 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCc
Confidence 3568899999999999999999999999988889888765553
No 157
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.72 E-value=2.7e-06 Score=77.10 Aligned_cols=35 Identities=17% Similarity=0.239 Sum_probs=31.1
Q ss_pred eEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCee
Q psy7411 370 LDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSG 404 (474)
Q Consensus 370 L~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG 404 (474)
+++.+|+.++|.||||+|||||++++++...|++|
T Consensus 33 ~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g 67 (180)
T 3ec2_A 33 FNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKG 67 (180)
T ss_dssp CCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSC
T ss_pred ccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcC
Confidence 45567999999999999999999999999887777
No 158
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.72 E-value=1.6e-05 Score=72.72 Aligned_cols=37 Identities=32% Similarity=0.489 Sum_probs=32.5
Q ss_pred EEEEeCCCCCChhHHHHhhcCCCCC-----------CeeEEEECCeec
Q psy7411 377 ITVLLGHNGAGKSTTMSMLTGLIIP-----------TSGTAYIDGHDI 413 (474)
Q Consensus 377 i~gLLGpNGAGKTTLL~~L~GL~~P-----------tsG~i~i~G~dI 413 (474)
.++++|+||+|||||++.++|...| ++|++.++|+++
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~ 78 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 78 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEE
Confidence 4789999999999999999998765 579999999765
No 159
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.70 E-value=6.3e-06 Score=80.61 Aligned_cols=52 Identities=23% Similarity=0.271 Sum_probs=45.8
Q ss_pred ccccccCCCceeEEechhhh--------------hhHHHHHHhhCccCCcccccchhcccccccee
Q psy7411 44 IAGLIIPTSGTAYIDGHDIW--------------YEMGKVRESLGLCPQYDLLFEELTVEDHLQFF 95 (474)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 95 (474)
|+++++|++|+++++|.++. .+..++|+++||+||+..+|+.+||.||+.|.
T Consensus 52 l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~ 117 (262)
T 1b0u_A 52 INFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEA 117 (262)
T ss_dssp HTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHH
T ss_pred HhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhh
Confidence 67889999999999999985 23457889999999999999999999999874
No 160
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.69 E-value=5.9e-06 Score=81.08 Aligned_cols=52 Identities=29% Similarity=0.337 Sum_probs=46.2
Q ss_pred ccccccCCCceeEEechhhh---hhHHHHHHhhCccCCcccccchhcccccccee
Q psy7411 44 IAGLIIPTSGTAYIDGHDIW---YEMGKVRESLGLCPQYDLLFEELTVEDHLQFF 95 (474)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 95 (474)
|+++++|++|+++++|.++. .+..++|+++||+||+..+|+.+||.||+.|.
T Consensus 70 l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~ 124 (263)
T 2olj_A 70 LNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLA 124 (263)
T ss_dssp HTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHH
T ss_pred HHcCCCCCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHH
Confidence 67889999999999999984 34567899999999999999999999999874
No 161
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.66 E-value=6.4e-06 Score=84.74 Aligned_cols=54 Identities=26% Similarity=0.329 Sum_probs=47.8
Q ss_pred ccccccCCCceeEEechhhh----hhHHHHHHhhCccCCcccccchhccccccceeee
Q psy7411 44 IAGLIIPTSGTAYIDGHDIW----YEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAK 97 (474)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 97 (474)
|+++++|++|+++++|.|+. .+..++|+++||+||++.||+.+||.||+.|...
T Consensus 74 i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~ 131 (366)
T 3tui_C 74 VNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLE 131 (366)
T ss_dssp HHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHH
T ss_pred HhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHH
Confidence 57889999999999999985 3567789999999999999999999999987543
No 162
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.66 E-value=6.7e-06 Score=82.48 Aligned_cols=49 Identities=18% Similarity=0.354 Sum_probs=43.6
Q ss_pred eeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc
Q psy7411 367 NLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY 415 (474)
Q Consensus 367 ~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~ 415 (474)
.++++..+|++++++|+||+||||+++.|++.+.++.|++.+.+.|..+
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r 144 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR 144 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccccc
Confidence 3456677899999999999999999999999999999999998888764
No 163
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.64 E-value=1.8e-05 Score=73.92 Aligned_cols=29 Identities=24% Similarity=0.209 Sum_probs=27.4
Q ss_pred eCCcEEEEeCCCCCChhHHHHhhcCCCCC
Q psy7411 373 YQNQITVLLGHNGAGKSTTMSMLTGLIIP 401 (474)
Q Consensus 373 ~~Gei~gLLGpNGAGKTTLL~~L~GL~~P 401 (474)
++|++++|+|||||||||++++|++.++|
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 58999999999999999999999999876
No 164
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=97.64 E-value=1.6e-05 Score=84.77 Aligned_cols=86 Identities=19% Similarity=0.215 Sum_probs=61.0
Q ss_pred ceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCC----------------------C----------------CCCe
Q psy7411 362 KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGL----------------------I----------------IPTS 403 (474)
Q Consensus 362 ~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL----------------------~----------------~Pts 403 (474)
...++++++++.+| +.+|+|+|||||||++.+|..+ + +...
T Consensus 48 f~~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~llg~r~~~~~i~~g~~~a~v~~~f~~~~~~~~~~i~r~~~~~g~ 126 (517)
T 4ad8_A 48 LATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGR 126 (517)
T ss_dssp BTTBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHHTCSCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSC
T ss_pred ccceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHHhcCCcHHHHhcCCCCcEEEEEEEEecCCCCeEEEEEEEecCCC
Confidence 34678899999998 9999999999999999999544 3 2335
Q ss_pred eEEEECCeecCc-chHHh-hcceEEEcCCCCCCCCCCHHHHHHHHHhc
Q psy7411 404 GTAYIDGHDIWY-EMGKV-RESLGLCPQYDLLFEELTVEDHLQFFAKG 449 (474)
Q Consensus 404 G~i~i~G~dI~~-~~~~i-r~~IG~~~Q~~~L~~~LTV~E~L~~~~~l 449 (474)
+.++++|+.+.. ...++ ...+.+++|+..+... .-.++..+....
T Consensus 127 ~~~~ing~~v~~~~l~~~~~~li~i~~q~~~~~l~-~~~~rr~~LD~~ 173 (517)
T 4ad8_A 127 GAARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRR 173 (517)
T ss_dssp CEEESSSSBCCHHHHHHHHTTTEEEESGGGGGTTT-SHHHHHHHHHTS
T ss_pred cEEEECCEECCHHHHHHHhhhheEEeCCchHHhcC-CHHHHHHHHHHH
Confidence 678888888753 23333 3447889998766543 555555554443
No 165
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.62 E-value=8.9e-06 Score=80.88 Aligned_cols=61 Identities=20% Similarity=0.216 Sum_probs=51.6
Q ss_pred EEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc
Q psy7411 350 QLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY 415 (474)
Q Consensus 350 ~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~ 415 (474)
..+++++.|+ ... ++++++ +|++++++|+||+||||+++.|++++.+..|++.+.+.|.+.
T Consensus 78 ~~~~l~~~~~-~~~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~ 138 (295)
T 1ls1_A 78 VYEALKEALG-GEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR 138 (295)
T ss_dssp HHHHHHHHTT-SSC--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSC
T ss_pred HHHHHHHHHC-CCC--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCccc
Confidence 4556667773 222 778888 999999999999999999999999999999999999988864
No 166
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.61 E-value=5.8e-06 Score=79.93 Aligned_cols=52 Identities=31% Similarity=0.515 Sum_probs=45.7
Q ss_pred ccccccCCCceeEEechhhhhhHHHHHHhhCccCCcccccchhccccccceee
Q psy7411 44 IAGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFA 96 (474)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 96 (474)
++++++|++|+++++|.++.+ +.+.|+++||+||+..+|+.+||.||+.|..
T Consensus 44 l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~ 95 (240)
T 2onk_A 44 IAGIVKPDRGEVRLNGADITP-LPPERRGIGFVPQDYALFPHLSVYRNIAYGL 95 (240)
T ss_dssp HHTSSCCSEEEEEETTEECTT-SCTTTSCCBCCCSSCCCCTTSCHHHHHHTTC
T ss_pred HhCCCCCCceEEEECCEECCc-CchhhCcEEEEcCCCccCCCCcHHHHHHHHH
Confidence 578899999999999999854 4556889999999999999999999998764
No 167
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.60 E-value=3.3e-05 Score=76.93 Aligned_cols=42 Identities=26% Similarity=0.411 Sum_probs=35.6
Q ss_pred eCCcEEEEeCCCCCChhHHHHhhcCCCCCCee-EEEECCeecC
Q psy7411 373 YQNQITVLLGHNGAGKSTTMSMLTGLIIPTSG-TAYIDGHDIW 414 (474)
Q Consensus 373 ~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG-~i~i~G~dI~ 414 (474)
.+|++++++|+||+||||+++.|++.+.+++| ++.+-+.|..
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~ 145 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTY 145 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcc
Confidence 47899999999999999999999999988778 6666555543
No 168
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.59 E-value=2.9e-06 Score=85.75 Aligned_cols=56 Identities=23% Similarity=0.299 Sum_probs=43.6
Q ss_pred eEEEEcCCceeeeeeeeEEeCCc------EEEEeCCCCCChhHHHHhhcCCCC--CCeeEEEECC
Q psy7411 354 LTKIYKTGKKAVDNLTLDMYQNQ------ITVLLGHNGAGKSTTMSMLTGLII--PTSGTAYIDG 410 (474)
Q Consensus 354 Lsk~y~~~~~aL~~lsL~i~~Ge------i~gLLGpNGAGKTTLL~~L~GL~~--PtsG~i~i~G 410 (474)
++..| +.+.++++++..+.+++ ++||+|||||||||++++|.+++. |++|.+.+-+
T Consensus 66 l~~~~-~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~ 129 (321)
T 3tqc_A 66 LSFYV-TARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVIT 129 (321)
T ss_dssp HHHHH-HHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEE
T ss_pred HHHhh-cchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEe
Confidence 44445 45677888888887776 999999999999999999999987 5666654433
No 169
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.59 E-value=3.4e-06 Score=78.80 Aligned_cols=56 Identities=20% Similarity=0.244 Sum_probs=44.3
Q ss_pred CcEEEEeCCCCCChhHHHHhhcCCC---CCCeeEEEE--------CCeecCc--chHHhhcceEEEcCC
Q psy7411 375 NQITVLLGHNGAGKSTTMSMLTGLI---IPTSGTAYI--------DGHDIWY--EMGKVRESLGLCPQY 430 (474)
Q Consensus 375 Gei~gLLGpNGAGKTTLL~~L~GL~---~PtsG~i~i--------~G~dI~~--~~~~ir~~IG~~~Q~ 430 (474)
+.+++|+||+||||||+.++|++.+ .+++|.+.. .|.++.. ...++++.+|+++|.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 73 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVS 73 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeec
Confidence 5689999999999999999998765 778888877 6666542 344567778888875
No 170
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.57 E-value=1.4e-05 Score=79.61 Aligned_cols=55 Identities=24% Similarity=0.201 Sum_probs=33.2
Q ss_pred EEEeCCCCCChhHHHHhhcC-CCCCCeeEEEECCeecCcchHHhhcceEEEcCCCCC
Q psy7411 378 TVLLGHNGAGKSTTMSMLTG-LIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLL 433 (474)
Q Consensus 378 ~gLLGpNGAGKTTLL~~L~G-L~~PtsG~i~i~G~dI~~~~~~ir~~IG~~~Q~~~L 433 (474)
+.+.||||+||||+++++++ +..|+.|.+.++|.+...... .+..+++++|.+.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~-~~~~~~~~~~~~~~ 94 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASN-RKLELNVVSSPYHL 94 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTCCC-------------------CCEECSSEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccc-ccceeeeecccceE
Confidence 78999999999999999999 899999999999987643222 25567888886543
No 171
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.55 E-value=1.1e-05 Score=76.65 Aligned_cols=49 Identities=27% Similarity=0.365 Sum_probs=44.5
Q ss_pred ccccccCCCceeEEechhhhhhHHHHHHhhCccCCcccccchhccccccceee
Q psy7411 44 IAGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFA 96 (474)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 96 (474)
|+++++|++|+++++|.++. +.|+++||+||+..+|+++||.||+.++.
T Consensus 55 l~Gl~~p~~G~I~~~g~~~~----~~~~~i~~v~q~~~~~~~~tv~enl~~~~ 103 (214)
T 1sgw_A 55 ISTYLKPLKGEIIYNGVPIT----KVKGKIFFLPEEIIVPRKISVEDYLKAVA 103 (214)
T ss_dssp HTTSSCCSEEEEEETTEEGG----GGGGGEEEECSSCCCCTTSBHHHHHHHHH
T ss_pred HhcCCCCCCeEEEECCEEhh----hhcCcEEEEeCCCcCCCCCCHHHHHHHHH
Confidence 67889999999999999986 46899999999999999999999998764
No 172
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.55 E-value=1.7e-05 Score=77.18 Aligned_cols=53 Identities=21% Similarity=0.228 Sum_probs=45.3
Q ss_pred ccccccCCCceeEEechhhhhh--HHHHHHhhCccCCcccccchhccccccceee
Q psy7411 44 IAGLIIPTSGTAYIDGHDIWYE--MGKVRESLGLCPQYDLLFEELTVEDHLQFFA 96 (474)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 96 (474)
|+++++|++|+++++|.++... ....|+.+||+||+..+|+.+||.||+.+..
T Consensus 53 l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~ 107 (257)
T 1g6h_A 53 ITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGE 107 (257)
T ss_dssp HTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGG
T ss_pred HhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHH
Confidence 6788999999999999998542 2456888999999999999999999997743
No 173
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.54 E-value=1.3e-05 Score=76.35 Aligned_cols=53 Identities=28% Similarity=0.514 Sum_probs=44.9
Q ss_pred ccccccCCCceeEEechhhhh----hHHHHH-HhhCccCCcccccchhccccccceee
Q psy7411 44 IAGLIIPTSGTAYIDGHDIWY----EMGKVR-ESLGLCPQYDLLFEELTVEDHLQFFA 96 (474)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~f~~ 96 (474)
|+++++|++|+++++|.++.. +..++| +.+||+||+..+|+++||.||+.|..
T Consensus 50 l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~ 107 (224)
T 2pcj_A 50 LGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPM 107 (224)
T ss_dssp HTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHH
T ss_pred HhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHH
Confidence 678899999999999999753 234555 78999999999999999999987754
No 174
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.52 E-value=1.4e-05 Score=86.89 Aligned_cols=73 Identities=15% Similarity=0.160 Sum_probs=57.4
Q ss_pred eeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCe-eEEEECCeecCcchHHhhcceEEEcCC
Q psy7411 353 GLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTS-GTAYIDGHDIWYEMGKVRESLGLCPQY 430 (474)
Q Consensus 353 ~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~Pts-G~i~i~G~dI~~~~~~ir~~IG~~~Q~ 430 (474)
++...| +...+++++++.+.+|+.+.|+||||+||||++++|+++.++.. |.+.+.+.+... ....+++||+.
T Consensus 39 ~l~~i~-G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~----~~p~i~~~p~g 112 (604)
T 3k1j_A 39 LIDQVI-GQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDE----NMPRIKTVPAC 112 (604)
T ss_dssp HHHHCC-SCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCT----TSCEEEEEETT
T ss_pred ccceEE-CchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccc----cCCcEEEEecc
Confidence 334445 56789999999999999999999999999999999999999887 788887765431 23346666553
No 175
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.52 E-value=1.1e-05 Score=82.39 Aligned_cols=52 Identities=29% Similarity=0.499 Sum_probs=46.2
Q ss_pred ccccccCCCceeEEechhhhhhHHHHHHhhCccCCcccccchhccccccceee
Q psy7411 44 IAGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFA 96 (474)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 96 (474)
|+++++|++|+++++|.++.+ ....|+++||+||+..||+.+||.||+.|..
T Consensus 46 iaGl~~p~~G~I~~~g~~i~~-~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~ 97 (348)
T 3d31_A 46 IAGFHVPDSGRILLDGKDVTD-LSPEKHDIAFVYQNYSLFPHMNVKKNLEFGM 97 (348)
T ss_dssp HHTSSCCSEEEEEETTEECTT-SCHHHHTCEEECTTCCCCTTSCHHHHHHHHH
T ss_pred HHcCCCCCCcEEEECCEECCC-CchhhCcEEEEecCcccCCCCCHHHHHHHHH
Confidence 678899999999999999854 5566889999999999999999999998854
No 176
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.51 E-value=1.6e-05 Score=76.58 Aligned_cols=52 Identities=33% Similarity=0.449 Sum_probs=43.7
Q ss_pred ccccccCCCceeEEechhhhhh-HHH-HHHhhCccCCcccccchhcccccccee
Q psy7411 44 IAGLIIPTSGTAYIDGHDIWYE-MGK-VRESLGLCPQYDLLFEELTVEDHLQFF 95 (474)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~f~ 95 (474)
|+++++|++|+++++|.++.+. ..+ .|+++||+||+..+|+.+||.||+.|.
T Consensus 52 l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~ 105 (240)
T 1ji0_A 52 IAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMG 105 (240)
T ss_dssp HTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGG
T ss_pred HhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHh
Confidence 6788999999999999998542 233 355699999999999999999998775
No 177
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=97.51 E-value=6.4e-05 Score=76.81 Aligned_cols=33 Identities=33% Similarity=0.577 Sum_probs=29.9
Q ss_pred eeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhc
Q psy7411 363 KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLT 396 (474)
Q Consensus 363 ~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~ 396 (474)
..++++++++.+| +++|+|||||||||++.+|+
T Consensus 12 ~~~~~~~i~~~~g-~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 12 LGLKNVDIEFQSG-ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp TTEEEEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cCccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 4577889999998 89999999999999999998
No 178
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.51 E-value=7.5e-06 Score=84.01 Aligned_cols=54 Identities=28% Similarity=0.411 Sum_probs=46.7
Q ss_pred ccccccCCCceeEEechhhh---hhHHHHHHhhCccCCcccccchhccccccceeee
Q psy7411 44 IAGLIIPTSGTAYIDGHDIW---YEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAK 97 (474)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 97 (474)
|+++++|++|+++++|.|+. .+....|+++||+||+..||+.+||.||+.|-..
T Consensus 50 iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~ 106 (359)
T 3fvq_A 50 LAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLG 106 (359)
T ss_dssp HHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTST
T ss_pred HhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHH
Confidence 67889999999999999984 2344567889999999999999999999988654
No 179
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.50 E-value=4.1e-05 Score=69.96 Aligned_cols=37 Identities=35% Similarity=0.518 Sum_probs=30.9
Q ss_pred EEEEeCCCCCChhHHHHhhcCCCC-----CC------eeEEEECCeec
Q psy7411 377 ITVLLGHNGAGKSTTMSMLTGLII-----PT------SGTAYIDGHDI 413 (474)
Q Consensus 377 i~gLLGpNGAGKTTLL~~L~GL~~-----Pt------sG~i~i~G~dI 413 (474)
.++++|+||+|||||++.++|... |+ .|++.++|+++
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~ 54 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 54 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEE
Confidence 478999999999999999999742 43 67899999765
No 180
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.46 E-value=2.3e-05 Score=75.98 Aligned_cols=51 Identities=27% Similarity=0.522 Sum_probs=44.6
Q ss_pred ccccccCCCceeEEechhhhh-hHHHHHHhhCccCCcccccchhcccccccee
Q psy7411 44 IAGLIIPTSGTAYIDGHDIWY-EMGKVRESLGLCPQYDLLFEELTVEDHLQFF 95 (474)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 95 (474)
|+++++|++|+++++|.++.+ ...++|+++||+||+..+|+ .||.||+.|.
T Consensus 55 l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~ 106 (247)
T 2ff7_A 55 IQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLN-RSIIDNISLA 106 (247)
T ss_dssp HTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTT-SBHHHHHTTT
T ss_pred HhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCcccc-ccHHHHHhcc
Confidence 678899999999999999864 35678999999999999996 6999998775
No 181
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.46 E-value=2.4e-05 Score=75.23 Aligned_cols=52 Identities=31% Similarity=0.367 Sum_probs=43.4
Q ss_pred ccccccCCCceeEEechhhhh----hHHHHH-HhhCccCCcccccchhcccccccee
Q psy7411 44 IAGLIIPTSGTAYIDGHDIWY----EMGKVR-ESLGLCPQYDLLFEELTVEDHLQFF 95 (474)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~f~ 95 (474)
|+++++|++|+++++|.|+.. +..+.| +.+||+||++.+|+.+||.||+.+-
T Consensus 51 l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~ 107 (235)
T 3tif_A 51 IGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELP 107 (235)
T ss_dssp HTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHH
T ss_pred HhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHH
Confidence 678899999999999998743 333444 5699999999999999999998764
No 182
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.45 E-value=7.6e-06 Score=82.74 Aligned_cols=65 Identities=18% Similarity=0.093 Sum_probs=52.9
Q ss_pred EEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecC
Q psy7411 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIW 414 (474)
Q Consensus 349 I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~ 414 (474)
++.+++.+.| +.+.+++++++...+|.+++++|+||+||||+++.|++...+..|++.+-+.+..
T Consensus 31 ie~~~~~~~~-~~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~ 95 (341)
T 2p67_A 31 VESRHPRHQA-LSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPS 95 (341)
T ss_dssp HHCCCHHHHH-HHHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred hhcCCchhhh-HHHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCC
Confidence 3445555556 3457889999999999999999999999999999999998888888777666553
No 183
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.43 E-value=2.5e-05 Score=73.19 Aligned_cols=51 Identities=18% Similarity=0.223 Sum_probs=38.1
Q ss_pred eeeeee-eeEEeCCcEEEEeCCCCCChhHHH-HhhcCCCCCCeeEEEECCeec
Q psy7411 363 KAVDNL-TLDMYQNQITVLLGHNGAGKSTTM-SMLTGLIIPTSGTAYIDGHDI 413 (474)
Q Consensus 363 ~aL~~l-sL~i~~Gei~gLLGpNGAGKTTLL-~~L~GL~~PtsG~i~i~G~dI 413 (474)
+.||++ +--+++|+++.+.||||+||||++ +++.+..++..+.+++..+..
T Consensus 10 ~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~ 62 (247)
T 2dr3_A 10 PGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEH 62 (247)
T ss_dssp TTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSC
T ss_pred hhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCC
Confidence 345555 557899999999999999999995 455556566666777776543
No 184
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.42 E-value=2.9e-05 Score=76.25 Aligned_cols=52 Identities=19% Similarity=0.337 Sum_probs=45.1
Q ss_pred ccccccCCCceeEEechhhhh-hHHHHHHhhCccCCcccccchhccccccceee
Q psy7411 44 IAGLIIPTSGTAYIDGHDIWY-EMGKVRESLGLCPQYDLLFEELTVEDHLQFFA 96 (474)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 96 (474)
|+++++|++|+++++|.++.+ ...++|+++||+||+..+|+ .||.||+.|..
T Consensus 65 l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~ 117 (271)
T 2ixe_A 65 LQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFG-RSFRENIAYGL 117 (271)
T ss_dssp HTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHTTC
T ss_pred HhcCCCCCCCEEEECCEEcccCCHHHHhccEEEEecCCcccc-ccHHHHHhhhc
Confidence 678899999999999999864 34578899999999999997 59999998754
No 185
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=97.41 E-value=1.1e-05 Score=82.59 Aligned_cols=54 Identities=26% Similarity=0.385 Sum_probs=46.8
Q ss_pred ccccccCCCceeEEechhhhhh----HHHHHHhhCccCCcccccchhccccccceeee
Q psy7411 44 IAGLIIPTSGTAYIDGHDIWYE----MGKVRESLGLCPQYDLLFEELTVEDHLQFFAK 97 (474)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 97 (474)
|+++++|++|+++++|.++.+. ....|+++||+||+..||+.+||.||+.|...
T Consensus 51 iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~ 108 (353)
T 1oxx_K 51 IAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLT 108 (353)
T ss_dssp HHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGT
T ss_pred HhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHH
Confidence 6788999999999999998642 45568899999999999999999999988643
No 186
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.40 E-value=6.8e-05 Score=69.28 Aligned_cols=30 Identities=20% Similarity=0.135 Sum_probs=27.3
Q ss_pred EEeCCcEEEEeCCCCCChhHHHHhhcCCCC
Q psy7411 371 DMYQNQITVLLGHNGAGKSTTMSMLTGLII 400 (474)
Q Consensus 371 ~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~ 400 (474)
++++|+++++.|++||||||+.+.|++.++
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 567889999999999999999999999764
No 187
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.38 E-value=1.8e-05 Score=81.06 Aligned_cols=53 Identities=26% Similarity=0.386 Sum_probs=45.5
Q ss_pred ccccccCCCceeEEechhhhhhHHHHHHhhCccCCcccccchhccccccceeee
Q psy7411 44 IAGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAK 97 (474)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 97 (474)
|+++++|++|+++++|.++.+ ...-|+++||+||+..||+.+||.||+.|...
T Consensus 49 iaGl~~p~~G~I~i~g~~i~~-~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~ 101 (359)
T 2yyz_A 49 LAGIYKPTSGEIYFDDVLVND-IPPKYREVGMVFQNYALYPHMTVFENIAFPLR 101 (359)
T ss_dssp HHTSSCCSEEEEEETTEECTT-SCGGGTTEEEECSSCCCCTTSCHHHHHHGGGS
T ss_pred HHCCCCCCccEEEECCEECCC-CChhhCcEEEEecCcccCCCCCHHHHHHHHHH
Confidence 678899999999999999854 33347889999999999999999999998643
No 188
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.38 E-value=2.7e-05 Score=78.07 Aligned_cols=52 Identities=29% Similarity=0.458 Sum_probs=45.0
Q ss_pred ccccccCCCceeEEechhhhh-hHHHHHHhhCccCCcccccchhccccccceee
Q psy7411 44 IAGLIIPTSGTAYIDGHDIWY-EMGKVRESLGLCPQYDLLFEELTVEDHLQFFA 96 (474)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 96 (474)
|++++.|++|++++||.|+.+ +..++|+.+||+||+..||. .||.||+.|..
T Consensus 100 l~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~-~Tv~eNi~~~~ 152 (306)
T 3nh6_A 100 LFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFN-DTIADNIRYGR 152 (306)
T ss_dssp HTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCS-EEHHHHHHTTS
T ss_pred HHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCc-ccHHHHHHhhc
Confidence 567889999999999999864 45778999999999999995 59999987653
No 189
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.37 E-value=4.9e-05 Score=75.47 Aligned_cols=58 Identities=17% Similarity=0.146 Sum_probs=45.3
Q ss_pred eCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcchHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q psy7411 373 YQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFF 446 (474)
Q Consensus 373 ~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~~~~ir~~IG~~~Q~~~L~~~LTV~E~L~~~ 446 (474)
.++.+++|.|++||||||+.+.|.+++++. | . . ++.+.+++|++.+++. +.++|+.+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~-------~-~~~~~iv~~D~f~~~~-~~~~~l~~~ 86 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------G-------G-EKSIGYASIDDFYLTH-EDQLKLNEQ 86 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------G-------G-GSCEEEEEGGGGBCCH-HHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------C-------C-CceEEEeccccccCCh-HHHHHHhcc
Confidence 467899999999999999999999988763 1 0 1 3345566999888765 888888775
No 190
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.36 E-value=1.6e-05 Score=81.41 Aligned_cols=52 Identities=35% Similarity=0.496 Sum_probs=45.7
Q ss_pred ccccccCCCceeEEechhhhhhHHHHHHhhCccCCcccccchhccccccceee
Q psy7411 44 IAGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFA 96 (474)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 96 (474)
|+++++|++|+++++|.++.. ....|+++||+||+..||+.+||.||+.|..
T Consensus 61 iaGl~~p~~G~I~i~g~~i~~-~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l 112 (355)
T 1z47_A 61 IAGLERPTKGDVWIGGKRVTD-LPPQKRNVGLVFQNYALFQHMTVYDNVSFGL 112 (355)
T ss_dssp HHTSSCCSEEEEEETTEECTT-CCGGGSSEEEECGGGCCCTTSCHHHHHHHHH
T ss_pred HhCCCCCCccEEEECCEECCc-CChhhCcEEEEecCcccCCCCCHHHHHHHHH
Confidence 678899999999999999854 4455789999999999999999999998864
No 191
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.36 E-value=2.3e-05 Score=84.28 Aligned_cols=59 Identities=19% Similarity=0.183 Sum_probs=47.5
Q ss_pred EeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCee
Q psy7411 352 RGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHD 412 (474)
Q Consensus 352 ~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~d 412 (474)
+++.+.+ +...+++++++++ +|+++.|+||||+||||++++|++...+..|.+...|..
T Consensus 87 ~~vk~~i-~~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~ 145 (543)
T 3m6a_A 87 EKVKERI-LEYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVR 145 (543)
T ss_dssp HHHHHHH-HHHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--
T ss_pred HHHHHHH-HHHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccc
Confidence 4455555 3345777788877 899999999999999999999999999999999887743
No 192
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.36 E-value=5.7e-05 Score=69.61 Aligned_cols=48 Identities=23% Similarity=0.279 Sum_probs=39.0
Q ss_pred eeeeeeee-EEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCee
Q psy7411 363 KAVDNLTL-DMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHD 412 (474)
Q Consensus 363 ~aL~~lsL-~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~d 412 (474)
+.||++.. .+++|++++++||||+||||+++.+++ ++..+.++++.++
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEG 55 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSC
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCC
Confidence 45666654 689999999999999999999999999 5556677777654
No 193
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.34 E-value=4e-05 Score=74.46 Aligned_cols=51 Identities=16% Similarity=0.066 Sum_probs=45.1
Q ss_pred ccccccCCCceeEEechhhhh-hHHHHHHhhCccCCcccccchhcccccccee
Q psy7411 44 IAGLIIPTSGTAYIDGHDIWY-EMGKVRESLGLCPQYDLLFEELTVEDHLQFF 95 (474)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 95 (474)
|+++++|+ |+++++|.++.+ ...++|+++||+||+..+|..+||.||+.|.
T Consensus 46 l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~ 97 (249)
T 2qi9_C 46 MAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLH 97 (249)
T ss_dssp HTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTT
T ss_pred HhCCCCCC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHHHHHh
Confidence 67889999 999999999853 3467899999999999999999999999875
No 194
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.32 E-value=2.2e-05 Score=75.73 Aligned_cols=51 Identities=24% Similarity=0.415 Sum_probs=44.0
Q ss_pred ccccccCCCceeEEechhhhh-hHHHHHHhhCccCCcccccchhcccccccee
Q psy7411 44 IAGLIIPTSGTAYIDGHDIWY-EMGKVRESLGLCPQYDLLFEELTVEDHLQFF 95 (474)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 95 (474)
|+++++|++|+++++|.++.+ ...++|+++||+||+..+|+. ||.||+.|.
T Consensus 48 l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~ 99 (243)
T 1mv5_A 48 LERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAG-TIRENLTYG 99 (243)
T ss_dssp HTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCE-EHHHHTTSC
T ss_pred HhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCccccc-cHHHHHhhh
Confidence 678899999999999999854 234678899999999999984 999999875
No 195
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.31 E-value=2.3e-05 Score=80.43 Aligned_cols=52 Identities=33% Similarity=0.455 Sum_probs=44.9
Q ss_pred ccccccCCCceeEEechhhhhhHHHHHHhhCccCCcccccchhccccccceee
Q psy7411 44 IAGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFA 96 (474)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 96 (474)
|+++++|++|+++++|.++.+ +..-|+++||+||+..||+.+||.||+.|..
T Consensus 49 iaGl~~p~~G~I~i~g~~i~~-~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~ 100 (362)
T 2it1_A 49 IAGIYKPTSGKIYFDEKDVTE-LPPKDRNVGLVFQNWALYPHMTVYKNIAFPL 100 (362)
T ss_dssp HHTSSCCSEEEEEETTEECTT-SCGGGTTEEEECTTCCCCTTSCHHHHHHHHH
T ss_pred HhcCCCCCceEEEECCEECCc-CCHhHCcEEEEecCcccCCCCCHHHHHHHHH
Confidence 678899999999999999853 3334678999999999999999999998854
No 196
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.31 E-value=2.2e-05 Score=81.22 Aligned_cols=53 Identities=28% Similarity=0.362 Sum_probs=46.0
Q ss_pred ccccccCCCceeEEechhhhhhHHHHHHhhCccCCcccccchhccccccceeee
Q psy7411 44 IAGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAK 97 (474)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 97 (474)
|+++++|++|+++++|.|+.. ...-|+.+||+||...||+.+||.||+.|...
T Consensus 49 iaGl~~p~~G~I~i~G~~~~~-~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~ 101 (381)
T 3rlf_A 49 IAGLETITSGDLFIGEKRMND-TPPAERGVGMVFQSYALYPHLSVAENMSFGLK 101 (381)
T ss_dssp HHTSSCCSEEEEEETTEECTT-CCGGGSCEEEECTTCCCCTTSCHHHHHTHHHH
T ss_pred HHcCCCCCCeEEEECCEECCC-CCHHHCCEEEEecCCcCCCCCCHHHHHHHHHH
Confidence 678899999999999999853 44456789999999999999999999998654
No 197
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.31 E-value=1.9e-05 Score=81.36 Aligned_cols=53 Identities=26% Similarity=0.341 Sum_probs=45.5
Q ss_pred ccccccCCCceeEEechhhhhh-----HHHHHHhhCccCCcccccchhccccccceee
Q psy7411 44 IAGLIIPTSGTAYIDGHDIWYE-----MGKVRESLGLCPQYDLLFEELTVEDHLQFFA 96 (474)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 96 (474)
|+++++|++|+++++|.++.+. ...-|+++||+||+..||+.+||.||+.|..
T Consensus 49 iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~ 106 (372)
T 1g29_1 49 IAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPL 106 (372)
T ss_dssp HHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHH
T ss_pred HHcCCCCCccEEEECCEECccccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHH
Confidence 6788999999999999998641 3344788999999999999999999998864
No 198
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.30 E-value=4.3e-05 Score=75.42 Aligned_cols=53 Identities=32% Similarity=0.429 Sum_probs=44.5
Q ss_pred ccccccCCCceeEEechhhh---hhHHHHHHhhCccCCcc--cccchhccccccceeee
Q psy7411 44 IAGLIIPTSGTAYIDGHDIW---YEMGKVRESLGLCPQYD--LLFEELTVEDHLQFFAK 97 (474)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~f~~~ 97 (474)
|+++++|++|+++++|.|+. .+..++|+.+||+||+. .+| .+||.||+.|...
T Consensus 54 l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~-~~tv~e~l~~~~~ 111 (275)
T 3gfo_A 54 FNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLF-SASVYQDVSFGAV 111 (275)
T ss_dssp HTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCC-SSBHHHHHHHHHH
T ss_pred HHcCCCCCCeEEEECCEECCcccccHHHHhCcEEEEEcCcccccc-cCcHHHHHHHHHH
Confidence 67889999999999999983 45678899999999986 355 7999999987643
No 199
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.30 E-value=2.1e-05 Score=81.04 Aligned_cols=53 Identities=28% Similarity=0.448 Sum_probs=39.7
Q ss_pred ccccccCCCceeEEechhhhhhHHHHHHhhCccCCcccccchhccccccceeee
Q psy7411 44 IAGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAK 97 (474)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 97 (474)
|+++++|++|+++++|.++.+ +..-|+++||+||+..||+.+||.||+.|...
T Consensus 57 iaGl~~p~~G~I~i~g~~i~~-~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~ 109 (372)
T 1v43_A 57 IAGLEEPTEGRIYFGDRDVTY-LPPKDRNISMVFQSYAVWPHMTVYENIAFPLK 109 (372)
T ss_dssp HHTSSCCSEEEEEETTEECTT-SCGGGGTEEEEEC------CCCHHHHHHTTCC
T ss_pred HHcCCCCCceEEEECCEECCC-CChhhCcEEEEecCcccCCCCCHHHHHHHHHH
Confidence 678899999999999999853 33346889999999999999999999998654
No 200
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.29 E-value=3.9e-05 Score=75.06 Aligned_cols=51 Identities=35% Similarity=0.454 Sum_probs=44.2
Q ss_pred ccccccCCCceeEEechhhhhhHHHHHHhhCccCCcc-cccchhccccccceee
Q psy7411 44 IAGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYD-LLFEELTVEDHLQFFA 96 (474)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~f~~ 96 (474)
|+++++|++|+++++|.++.+. ++|+++||+||+. .++..+||.||+.|..
T Consensus 53 i~Gl~~p~~G~I~~~g~~~~~~--~~~~~i~~v~q~~~~~~~~~tv~enl~~~~ 104 (266)
T 2yz2_A 53 VAGLIEPTSGDVLYDGERKKGY--EIRRNIGIAFQYPEDQFFAERVFDEVAFAV 104 (266)
T ss_dssp HTTSSCCSEEEEEETTEECCHH--HHGGGEEEECSSGGGGCCCSSHHHHHHHTT
T ss_pred HhCCCCCCCcEEEECCEECchH--HhhhhEEEEeccchhhcCCCcHHHHHHHHH
Confidence 6788999999999999998654 7899999999995 5677899999998754
No 201
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.27 E-value=7.6e-05 Score=66.52 Aligned_cols=28 Identities=32% Similarity=0.330 Sum_probs=25.1
Q ss_pred CCcEEEEeCCCCCChhHHHHhhcCCCCC
Q psy7411 374 QNQITVLLGHNGAGKSTTMSMLTGLIIP 401 (474)
Q Consensus 374 ~Gei~gLLGpNGAGKTTLL~~L~GL~~P 401 (474)
.|++++|+|+|||||||+.++|++.+.+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4788999999999999999999997654
No 202
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.26 E-value=4.9e-05 Score=77.19 Aligned_cols=42 Identities=21% Similarity=0.109 Sum_probs=36.2
Q ss_pred eCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecC
Q psy7411 373 YQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIW 414 (474)
Q Consensus 373 ~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~ 414 (474)
+++.+++|+|++|||||||++.|+|...|++|++.+.+.|..
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~ 113 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPS 113 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCC
Confidence 457889999999999999999999998888888888776654
No 203
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.26 E-value=5.2e-05 Score=77.68 Aligned_cols=74 Identities=19% Similarity=0.227 Sum_probs=55.1
Q ss_pred EEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEE-EECCeecCcchHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q psy7411 371 DMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTA-YIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFF 446 (474)
Q Consensus 371 ~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i-~i~G~dI~~~~~~ir~~IG~~~Q~~~L~~~LTV~E~L~~~ 446 (474)
-+++|+++.|.||+|+|||||+..+++...+..|.+ +++++...... ..+++|+.+|+..+....++.+.+...
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~--ra~rlgv~~~~l~i~~~~~~e~~l~~~ 131 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPV--YAKNLGVDLKSLLISQPDHGEQALEIV 131 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH--HHHHHTCCGGGCEEECCSSHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchH--HHHHcCCchhhhhhhhccCHHHHHHHH
Confidence 478999999999999999999999998877777754 67766543322 334578877776665666777766543
No 204
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=97.26 E-value=6.4e-05 Score=81.27 Aligned_cols=51 Identities=35% Similarity=0.541 Sum_probs=45.2
Q ss_pred ccccccCCCceeEEechhhhh-hHHHHHHhhCccCCcccccchhcccccccee
Q psy7411 44 IAGLIIPTSGTAYIDGHDIWY-EMGKVRESLGLCPQYDLLFEELTVEDHLQFF 95 (474)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 95 (474)
++++++|++|++++||.|+.+ +..+.|+++||+||+..||++ ||.||+.|-
T Consensus 387 l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-tv~eni~~~ 438 (578)
T 4a82_A 387 IPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSD-TVKENILLG 438 (578)
T ss_dssp TTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSS-BHHHHHGGG
T ss_pred HhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcc-cHHHHHhcC
Confidence 567889999999999999865 467899999999999999987 999998764
No 205
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.24 E-value=5e-05 Score=81.01 Aligned_cols=59 Identities=12% Similarity=0.144 Sum_probs=43.1
Q ss_pred EEEEeeEEEEcCCceeeeee-eeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeE--EEECCee
Q psy7411 349 IQLRGLTKIYKTGKKAVDNL-TLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGT--AYIDGHD 412 (474)
Q Consensus 349 I~i~~Lsk~y~~~~~aL~~l-sL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~--i~i~G~d 412 (474)
+++++++..++ -++.+ +..+++|++++|+|+||+|||||+++++|+.+|+ |. +++.+++
T Consensus 258 ~~~~~l~~g~~----~ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~~vi~~~~ee 319 (525)
T 1tf7_A 258 SSNVRVSSGVV----RLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KERAILFAYEE 319 (525)
T ss_dssp CCCCEECCSCH----HHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TCCEEEEESSS
T ss_pred cccceeecChH----HHHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CCCEEEEEEeC
Confidence 34555554442 13322 4489999999999999999999999999999886 54 4665544
No 206
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.21 E-value=7.1e-05 Score=73.37 Aligned_cols=53 Identities=17% Similarity=0.282 Sum_probs=46.7
Q ss_pred ccccccCCCceeEEechhhhh-hHHHHHHhhCccCCcccccchhccccccceee
Q psy7411 44 IAGLIIPTSGTAYIDGHDIWY-EMGKVRESLGLCPQYDLLFEELTVEDHLQFFA 96 (474)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 96 (474)
|+++++|++|+++++|.|+.. ...+.|+.+||+||+..++..+||.||+.|..
T Consensus 57 l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~ 110 (266)
T 4g1u_C 57 LTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGR 110 (266)
T ss_dssp HTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGG
T ss_pred HhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhh
Confidence 678899999999999999864 45678899999999999999999999998754
No 207
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.19 E-value=0.00021 Score=74.44 Aligned_cols=37 Identities=24% Similarity=0.434 Sum_probs=31.9
Q ss_pred EEEEeCCCCCChhHHHHhhcCCCC------------CCeeEEEECCeec
Q psy7411 377 ITVLLGHNGAGKSTTMSMLTGLII------------PTSGTAYIDGHDI 413 (474)
Q Consensus 377 i~gLLGpNGAGKTTLL~~L~GL~~------------PtsG~i~i~G~dI 413 (474)
.++++|+||+|||||++.|+|... |.+|.+.++|+++
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~ 230 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKY 230 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEE
Confidence 578999999999999999999754 6789999999865
No 208
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.16 E-value=9.5e-05 Score=80.14 Aligned_cols=52 Identities=27% Similarity=0.467 Sum_probs=45.5
Q ss_pred ccccccCCCceeEEechhhhh-hHHHHHHhhCccCCcccccchhccccccceee
Q psy7411 44 IAGLIIPTSGTAYIDGHDIWY-EMGKVRESLGLCPQYDLLFEELTVEDHLQFFA 96 (474)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 96 (474)
++++++|++|++++||.|+.+ +..++|+++||+||++.||.. ||.||+.+..
T Consensus 389 l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~ 441 (587)
T 3qf4_A 389 IPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSG-TIKENLKWGR 441 (587)
T ss_dssp TTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSE-EHHHHHTTTC
T ss_pred HhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCc-cHHHHHhccC
Confidence 567889999999999999865 567889999999999999976 9999987643
No 209
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=97.15 E-value=7.5e-05 Score=80.73 Aligned_cols=51 Identities=25% Similarity=0.462 Sum_probs=44.9
Q ss_pred ccccccCCCceeEEechhhhh-hHHHHHHhhCccCCcccccchhcccccccee
Q psy7411 44 IAGLIIPTSGTAYIDGHDIWY-EMGKVRESLGLCPQYDLLFEELTVEDHLQFF 95 (474)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 95 (474)
++++++|++|++++||.|+.+ +..++|+++||+||+..+|+. ||.||+.+.
T Consensus 389 l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~ 440 (582)
T 3b60_A 389 ITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFND-TVANNIAYA 440 (582)
T ss_dssp HTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSS-BHHHHHHTT
T ss_pred HhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCC-CHHHHHhcc
Confidence 467889999999999999864 467889999999999999986 999998764
No 210
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=97.13 E-value=9e-05 Score=80.10 Aligned_cols=51 Identities=24% Similarity=0.469 Sum_probs=44.9
Q ss_pred ccccccCCCceeEEechhhhh-hHHHHHHhhCccCCcccccchhcccccccee
Q psy7411 44 IAGLIIPTSGTAYIDGHDIWY-EMGKVRESLGLCPQYDLLFEELTVEDHLQFF 95 (474)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 95 (474)
++++++|++|++++||.|+.+ +..+.|+++||+||++.+|++ ||.||+.+.
T Consensus 389 l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~ 440 (582)
T 3b5x_A 389 FTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFND-TIANNIAYA 440 (582)
T ss_pred HhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccc-cHHHHHhcc
Confidence 567889999999999999864 457789999999999999986 999998764
No 211
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=97.13 E-value=7.8e-05 Score=80.80 Aligned_cols=52 Identities=31% Similarity=0.470 Sum_probs=45.3
Q ss_pred ccccccCCCceeEEechhhhh-hHHHHHHhhCccCCcccccchhccccccceee
Q psy7411 44 IAGLIIPTSGTAYIDGHDIWY-EMGKVRESLGLCPQYDLLFEELTVEDHLQFFA 96 (474)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 96 (474)
++++++|++|++++||.|+.+ +..++|+++||+||+..||+. ||.||+.|..
T Consensus 390 l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~ 442 (595)
T 2yl4_A 390 LLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSC-SIAENIAYGA 442 (595)
T ss_dssp HTTSSCCSEEEEEETTEETTTBCHHHHHHSEEEECSSCCCCSS-BHHHHHHTTS
T ss_pred HhcCcCCCCcEEEECCEEhhhCCHHHHHhceEEEccCCcccCC-CHHHHHhhcC
Confidence 567889999999999999865 457789999999999999975 9999987643
No 212
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.10 E-value=7e-05 Score=67.62 Aligned_cols=40 Identities=30% Similarity=0.435 Sum_probs=32.0
Q ss_pred eCCcEEEEeCCCCCChhHHHHhhcCCCCCCee--EEEECCeec
Q psy7411 373 YQNQITVLLGHNGAGKSTTMSMLTGLIIPTSG--TAYIDGHDI 413 (474)
Q Consensus 373 ~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG--~i~i~G~dI 413 (474)
++|+++++.|++||||||+.++|++.++| .| .+.+++..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHH
Confidence 47899999999999999999999998766 45 565665444
No 213
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.07 E-value=0.00031 Score=62.65 Aligned_cols=28 Identities=25% Similarity=0.606 Sum_probs=22.5
Q ss_pred eeeEEeCCcEEEEeCCCCCChhHHHHhhc
Q psy7411 368 LTLDMYQNQITVLLGHNGAGKSTTMSMLT 396 (474)
Q Consensus 368 lsL~i~~Gei~gLLGpNGAGKTTLL~~L~ 396 (474)
..+++.+ .+++++|||||||||++.+|.
T Consensus 17 ~~i~f~~-g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 17 TVVEFKE-GINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEcCC-CeEEEECCCCCCHHHHHHHHH
Confidence 3444444 489999999999999999886
No 214
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.07 E-value=3e-05 Score=82.76 Aligned_cols=90 Identities=12% Similarity=0.115 Sum_probs=60.4
Q ss_pred EEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCcc-hHHhhcceEEEcC
Q psy7411 351 LRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYE-MGKVRESLGLCPQ 429 (474)
Q Consensus 351 i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~~-~~~ir~~IG~~~Q 429 (474)
++++.+.+ +...+++++++++++| +.|.||||+|||||++++++... .+.+.+++.++... ....+++++.++|
T Consensus 43 l~~lv~~l-~~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~lfq 117 (499)
T 2dhr_A 43 LKEIVEFL-KNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFE 117 (499)
T ss_dssp HHHHHHHH-HCGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHHHTT
T ss_pred HHHHHHHh-hchhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHHHHH
Confidence 34444445 3346788999999999 88999999999999999999864 78899998776431 1122233445566
Q ss_pred CCC-CCCCCCHHHHHHH
Q psy7411 430 YDL-LFEELTVEDHLQF 445 (474)
Q Consensus 430 ~~~-L~~~LTV~E~L~~ 445 (474)
... ..+...+.|++..
T Consensus 118 ~a~~~~p~il~IDEId~ 134 (499)
T 2dhr_A 118 TAKRHAPCIVFIDEIDA 134 (499)
T ss_dssp TSSSSSSCEEEEECGGG
T ss_pred HHHhcCCCEEEEehHHH
Confidence 532 3344455555543
No 215
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.06 E-value=0.00012 Score=79.41 Aligned_cols=51 Identities=27% Similarity=0.449 Sum_probs=45.0
Q ss_pred ccccccCCCceeEEechhhhh-hHHHHHHhhCccCCcccccchhcccccccee
Q psy7411 44 IAGLIIPTSGTAYIDGHDIWY-EMGKVRESLGLCPQYDLLFEELTVEDHLQFF 95 (474)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 95 (474)
+++++.|++|++++||.|+.+ +..++|+++||+||++.||.. ||.||+.+.
T Consensus 401 l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~ 452 (598)
T 3qf4_B 401 LMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFST-TVKENLKYG 452 (598)
T ss_dssp HTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSS-BHHHHHHSS
T ss_pred HhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCccccc-cHHHHHhcC
Confidence 567889999999999999865 567899999999999999965 999999875
No 216
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.03 E-value=0.0002 Score=69.67 Aligned_cols=30 Identities=30% Similarity=0.392 Sum_probs=27.1
Q ss_pred EEeCCcEEEEeCCCCCChhHHHHhhcCCCC
Q psy7411 371 DMYQNQITVLLGHNGAGKSTTMSMLTGLII 400 (474)
Q Consensus 371 ~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~ 400 (474)
.+++|++++|+||||+|||||++.+++...
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 378999999999999999999999998654
No 217
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.94 E-value=0.00017 Score=75.47 Aligned_cols=59 Identities=19% Similarity=0.188 Sum_probs=49.8
Q ss_pred EeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc
Q psy7411 352 RGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY 415 (474)
Q Consensus 352 ~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~ 415 (474)
++|++.|++ .. ++++++ ++++++++|+||+||||++..|++.+.+..|++.+.+.|+..
T Consensus 80 ~~L~~~~~~-~~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r 138 (425)
T 2ffh_A 80 EALKEALGG-EA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR 138 (425)
T ss_dssp HHHHHHTTS-SC--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSC
T ss_pred HHHHHHhCC-Cc--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccC
Confidence 456667732 22 678888 899999999999999999999999999999999998888764
No 218
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.93 E-value=0.00016 Score=66.24 Aligned_cols=56 Identities=32% Similarity=0.400 Sum_probs=40.2
Q ss_pred EEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcC--------CCCCCeeEEEECCeec
Q psy7411 357 IYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG--------LIIPTSGTAYIDGHDI 413 (474)
Q Consensus 357 ~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~G--------L~~PtsG~i~i~G~dI 413 (474)
.|++-..+++++++..++.+ ++++|++|+|||||++.+++ -..++.+++.++|.++
T Consensus 8 ~~~~~~~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~l 71 (198)
T 1f6b_A 8 IYSGFSSVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTF 71 (198)
T ss_dssp -----CHHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEE
T ss_pred HHHHHHHHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEEE
Confidence 34444467888888887775 67999999999999999997 2344567888877543
No 219
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.90 E-value=0.00016 Score=70.39 Aligned_cols=50 Identities=20% Similarity=0.375 Sum_probs=42.0
Q ss_pred ccccccCCCceeEEechhhhh-hHHHHHHhhCccCCcccccchhcccccccee
Q psy7411 44 IAGLIIPTSGTAYIDGHDIWY-EMGKVRESLGLCPQYDLLFEELTVEDHLQFF 95 (474)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 95 (474)
|+++++| +|+++++|.|+.+ ...++|+++||+||+..+|+ .||.||+.|.
T Consensus 66 l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~ 116 (260)
T 2ghi_A 66 LYRFYDA-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFN-ETIKYNILYG 116 (260)
T ss_dssp HTTSSCC-EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCS-EEHHHHHHTT
T ss_pred HhccCCC-CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccc-cCHHHHHhcc
Confidence 5677776 8999999999864 34678999999999999996 5999998763
No 220
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.87 E-value=0.00013 Score=72.57 Aligned_cols=61 Identities=21% Similarity=0.323 Sum_probs=49.2
Q ss_pred EEeeEEEEcCCceeeee-eeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc
Q psy7411 351 LRGLTKIYKTGKKAVDN-LTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY 415 (474)
Q Consensus 351 i~~Lsk~y~~~~~aL~~-lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~ 415 (474)
.+++.+.|++ .. ++ ++++.+ +++++++|+||+||||++..|++...+..|++.+.+.|.++
T Consensus 77 ~~~l~~~~~~-~~--~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r 138 (297)
T 1j8m_F 77 YDELSNLFGG-DK--EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYR 138 (297)
T ss_dssp HHHHHHHTTC-SC--CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred HHHHHHHhcc-cc--ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 3456666633 22 56 788766 99999999999999999999999999888999998888764
No 221
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.84 E-value=0.00012 Score=68.22 Aligned_cols=44 Identities=25% Similarity=0.287 Sum_probs=37.5
Q ss_pred eEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCee--EEEECCeec
Q psy7411 370 LDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSG--TAYIDGHDI 413 (474)
Q Consensus 370 L~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG--~i~i~G~dI 413 (474)
+.+.+|.++++.|++||||||+.+.|++.++|+.| .+.+++.++
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 34568899999999999999999999999888888 888876544
No 222
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.83 E-value=0.00013 Score=71.96 Aligned_cols=52 Identities=25% Similarity=0.148 Sum_probs=43.1
Q ss_pred ccccccCCCceeEEechhhh---hhHHHHHHhhCccCCccccc--chhcccccccee
Q psy7411 44 IAGLIIPTSGTAYIDGHDIW---YEMGKVRESLGLCPQYDLLF--EELTVEDHLQFF 95 (474)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~f~ 95 (474)
|+++++|++|+++++|.++. .+..++|+++||+||+..++ ..+||.||+.|.
T Consensus 67 l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~ 123 (279)
T 2ihy_A 67 LNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISG 123 (279)
T ss_dssp HTTSSCCSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTT
T ss_pred HhCCCCCCCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhh
Confidence 67889999999999999984 24567899999999998653 357999998764
No 223
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.83 E-value=0.00064 Score=61.70 Aligned_cols=50 Identities=28% Similarity=0.312 Sum_probs=29.1
Q ss_pred eeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcC--------CCCCCeeEEEECCeec
Q psy7411 363 KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG--------LIIPTSGTAYIDGHDI 413 (474)
Q Consensus 363 ~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~G--------L~~PtsG~i~i~G~dI 413 (474)
.++++++++.++. .++++|++|+|||||++.+++ -..++.+++.++|..+
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~ 69 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKF 69 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTEEE
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCEEE
Confidence 4788899888777 568999999999999999987 2334467777777543
No 224
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.81 E-value=0.00013 Score=75.72 Aligned_cols=52 Identities=17% Similarity=0.256 Sum_probs=47.1
Q ss_pred cEEEEeeEEEEcCCceeee--------------eeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCC
Q psy7411 348 GIQLRGLTKIYKTGKKAVD--------------NLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLI 399 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~--------------~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~ 399 (474)
.+.++||+..|+..+..++ |+.+.+.+||..+|+||+|+|||||++.|++..
T Consensus 133 ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 133 KILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp SCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CceeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 4778899999977777898 899999999999999999999999999998864
No 225
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.78 E-value=0.00037 Score=66.46 Aligned_cols=45 Identities=13% Similarity=0.220 Sum_probs=31.5
Q ss_pred eeeeeeeEEe---CCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEEC
Q psy7411 364 AVDNLTLDMY---QNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYID 409 (474)
Q Consensus 364 aL~~lsL~i~---~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~ 409 (474)
-+.+.++... +|.++++.|++||||||+++.|+..+++ .+.+...
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 3555555554 8999999999999999999999998877 6666543
No 226
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=96.73 E-value=0.00021 Score=78.68 Aligned_cols=61 Identities=18% Similarity=0.077 Sum_probs=41.4
Q ss_pred eeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCC--CeeEEEECCeecCc-chHHhhcceEEEcCC
Q psy7411 369 TLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIP--TSGTAYIDGHDIWY-EMGKVRESLGLCPQY 430 (474)
Q Consensus 369 sL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~P--tsG~i~i~G~dI~~-~~~~ir~~IG~~~Q~ 430 (474)
++++.+++.++++|++|+|||||++.|++...+ ..|++ .+|..+.. ...+.++.+++.+|.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~ 66 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGV 66 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEE
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecc
Confidence 456788999999999999999999999976654 66777 55655542 223334455555543
No 227
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=96.71 E-value=0.00044 Score=69.89 Aligned_cols=43 Identities=21% Similarity=0.325 Sum_probs=33.1
Q ss_pred ceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcC--CCCCCeeEEE
Q psy7411 362 KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG--LIIPTSGTAY 407 (474)
Q Consensus 362 ~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~G--L~~PtsG~i~ 407 (474)
..+|++++++++ .++++|++||||||+++.|+| +.++.+|.++
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT 68 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVT 68 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCC
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCccc
Confidence 358899999988 789999999999999999999 6677777554
No 228
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.71 E-value=0.00027 Score=68.33 Aligned_cols=52 Identities=25% Similarity=0.333 Sum_probs=40.7
Q ss_pred cccc--ccCCCceeEEechhhhhh-HHH-HHHhhCccCCcccccchhcccccccee
Q psy7411 44 IAGL--IIPTSGTAYIDGHDIWYE-MGK-VRESLGLCPQYDLLFEELTVEDHLQFF 95 (474)
Q Consensus 44 ~~~~--~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~f~ 95 (474)
|+++ ++|++|+++++|.++.+. ..+ .|+.+||+||++.+|+.+||.||+.+.
T Consensus 49 l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~ 104 (250)
T 2d2e_A 49 LAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLA 104 (250)
T ss_dssp HHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHH
T ss_pred HhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEeccCCccccCCCHHHHHHHH
Confidence 4566 789999999999998542 222 245699999999999999999998764
No 229
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.70 E-value=0.00012 Score=74.55 Aligned_cols=51 Identities=18% Similarity=0.229 Sum_probs=36.3
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeE
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGT 405 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~ 405 (474)
.+.+.++++.+ +.+.+.+++++++ +++|++|+|||||++.|.|...+..+.
T Consensus 17 ~v~~~~l~~~~-~~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~ 67 (361)
T 2qag_A 17 YVGFANLPNQV-HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV 67 (361)
T ss_dssp ----CCHHHHH-HTHHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC-----
T ss_pred eEEeccchHHh-CCeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCc
Confidence 36778888888 4567888988887 999999999999999998876554443
No 230
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.70 E-value=0.0012 Score=59.04 Aligned_cols=40 Identities=28% Similarity=0.330 Sum_probs=29.9
Q ss_pred eCCcEEEEeCCCCCChhHHHHhhcCCCCC------------CeeEEEECCee
Q psy7411 373 YQNQITVLLGHNGAGKSTTMSMLTGLIIP------------TSGTAYIDGHD 412 (474)
Q Consensus 373 ~~Gei~gLLGpNGAGKTTLL~~L~GL~~P------------tsG~i~i~G~d 412 (474)
++|..++++|++|+|||||++.++|...+ ..+.+.++|.+
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 53 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMP 53 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeE
Confidence 36788999999999999999999986421 13667777654
No 231
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=96.69 E-value=0.0011 Score=67.74 Aligned_cols=37 Identities=27% Similarity=0.401 Sum_probs=31.2
Q ss_pred EEEEeCCCCCChhHHHHhhcCCCC-----------CCeeEEEECCeec
Q psy7411 377 ITVLLGHNGAGKSTTMSMLTGLII-----------PTSGTAYIDGHDI 413 (474)
Q Consensus 377 i~gLLGpNGAGKTTLL~~L~GL~~-----------PtsG~i~i~G~dI 413 (474)
+++++|++|||||||++.|+|... |+.|.+.++|.++
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v 228 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKI 228 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEE
Confidence 488999999999999999999765 6789999998754
No 232
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.64 E-value=0.00019 Score=70.21 Aligned_cols=48 Identities=25% Similarity=0.428 Sum_probs=42.2
Q ss_pred ccccccCCCceeEEechhhhhhHHHHHHhhC-ccCCcccccchhccccccceee
Q psy7411 44 IAGLIIPTSGTAYIDGHDIWYEMGKVRESLG-LCPQYDLLFEELTVEDHLQFFA 96 (474)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~f~~ 96 (474)
|++++ |++|+++++|.++.+. .+ |+++| |+||+..+ .+||.||+.|+.
T Consensus 50 l~Gl~-p~~G~I~~~g~~~~~~-~~-~~~i~~~v~Q~~~l--~~tv~enl~~~~ 98 (263)
T 2pjz_A 50 ISGLL-PYSGNIFINGMEVRKI-RN-YIRYSTNLPEAYEI--GVTVNDIVYLYE 98 (263)
T ss_dssp HTTSS-CCEEEEEETTEEGGGC-SC-CTTEEECCGGGSCT--TSBHHHHHHHHH
T ss_pred HhCCC-CCCcEEEECCEECcch-HH-hhheEEEeCCCCcc--CCcHHHHHHHhh
Confidence 67888 9999999999998765 44 88999 99999988 999999998865
No 233
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.64 E-value=0.00079 Score=61.88 Aligned_cols=22 Identities=41% Similarity=0.581 Sum_probs=20.7
Q ss_pred EEEEeCCCCCChhHHHHhhcCC
Q psy7411 377 ITVLLGHNGAGKSTTMSMLTGL 398 (474)
Q Consensus 377 i~gLLGpNGAGKTTLL~~L~GL 398 (474)
+++|+|+|||||||+.++|+++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l 25 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL 25 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 6899999999999999999984
No 234
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.53 E-value=4.6e-05 Score=76.20 Aligned_cols=47 Identities=15% Similarity=0.249 Sum_probs=39.2
Q ss_pred CCceeeeeeeeEEeCCcE--EEEeCCCCCChhHHHHhhcCCCCCCeeEE
Q psy7411 360 TGKKAVDNLTLDMYQNQI--TVLLGHNGAGKSTTMSMLTGLIIPTSGTA 406 (474)
Q Consensus 360 ~~~~aL~~lsL~i~~Gei--~gLLGpNGAGKTTLL~~L~GL~~PtsG~i 406 (474)
+...+++.++..+.+|++ +.+.||+|+||||+++++++.+.+..+..
T Consensus 29 g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~ 77 (340)
T 1sxj_C 29 GQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSN 77 (340)
T ss_dssp SCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHH
T ss_pred CcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccc
Confidence 345678888888889988 99999999999999999999876665543
No 235
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=96.53 E-value=0.0019 Score=64.94 Aligned_cols=29 Identities=24% Similarity=0.611 Sum_probs=22.8
Q ss_pred eeeeEEeCCcEEEEeCCCCCChhHHHHhhc
Q psy7411 367 NLTLDMYQNQITVLLGHNGAGKSTTMSMLT 396 (474)
Q Consensus 367 ~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~ 396 (474)
+..++..+ .+++++|||||||||++.+|+
T Consensus 16 ~~~i~f~~-~~~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 16 DTVVEFKE-GINLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp EEEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEcCCC-CeEEEECCCCCCHHHHHHHHH
Confidence 44455544 589999999999999999763
No 236
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.53 E-value=0.0014 Score=61.26 Aligned_cols=28 Identities=25% Similarity=0.606 Sum_probs=22.2
Q ss_pred eeeEEeCCcEEEEeCCCCCChhHHHHhhc
Q psy7411 368 LTLDMYQNQITVLLGHNGAGKSTTMSMLT 396 (474)
Q Consensus 368 lsL~i~~Gei~gLLGpNGAGKTTLL~~L~ 396 (474)
.++++.+ .+++|+|||||||||++.+|.
T Consensus 17 ~~i~f~~-~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 17 TVVEFKE-GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEeCC-CeEEEEcCCCCCHHHHHHHHH
Confidence 3444444 599999999999999998774
No 237
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.53 E-value=0.00046 Score=62.55 Aligned_cols=38 Identities=21% Similarity=0.212 Sum_probs=32.0
Q ss_pred eEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEE
Q psy7411 370 LDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAY 407 (474)
Q Consensus 370 L~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~ 407 (474)
....+|.++.+.|++||||||+.+.|+..+.+..+.+.
T Consensus 8 ~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~ 45 (186)
T 2yvu_A 8 KCIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVE 45 (186)
T ss_dssp CCCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 34457899999999999999999999998877666653
No 238
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.48 E-value=0.0016 Score=58.01 Aligned_cols=22 Identities=41% Similarity=0.561 Sum_probs=20.3
Q ss_pred EEEEeCCCCCChhHHHHhhcCC
Q psy7411 377 ITVLLGHNGAGKSTTMSMLTGL 398 (474)
Q Consensus 377 i~gLLGpNGAGKTTLL~~L~GL 398 (474)
.++++|++|+|||||++.++|-
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999984
No 239
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.47 E-value=0.0028 Score=55.87 Aligned_cols=23 Identities=39% Similarity=0.497 Sum_probs=20.9
Q ss_pred EEEEeCCCCCChhHHHHhhcCCC
Q psy7411 377 ITVLLGHNGAGKSTTMSMLTGLI 399 (474)
Q Consensus 377 i~gLLGpNGAGKTTLL~~L~GL~ 399 (474)
.++++|++|+|||||++.++|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999854
No 240
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.33 E-value=0.0016 Score=67.54 Aligned_cols=41 Identities=22% Similarity=0.240 Sum_probs=33.3
Q ss_pred EEeCCcEEEEeCCCCCChhHHHHhhcCC-----------CCCCeeEEEECCe
Q psy7411 371 DMYQNQITVLLGHNGAGKSTTMSMLTGL-----------IIPTSGTAYIDGH 411 (474)
Q Consensus 371 ~i~~Gei~gLLGpNGAGKTTLL~~L~GL-----------~~PtsG~i~i~G~ 411 (474)
.+..+..++++|+||+|||||+++|+|. ..|..|.+.+.+.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 3456778999999999999999999997 6788888887653
No 241
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.32 E-value=0.0014 Score=59.50 Aligned_cols=32 Identities=16% Similarity=0.285 Sum_probs=25.8
Q ss_pred eeeeEEeCCcEEEEeCCCCCChhHHHHhhcCC
Q psy7411 367 NLTLDMYQNQITVLLGHNGAGKSTTMSMLTGL 398 (474)
Q Consensus 367 ~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL 398 (474)
++|++..++.+++|+|+.||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888889999999999999999999998753
No 242
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.26 E-value=0.00064 Score=70.33 Aligned_cols=51 Identities=27% Similarity=0.325 Sum_probs=42.9
Q ss_pred ccccccCCCceeEEechhhhh-hHHHHHHhhCccCCcccccchhccccccceee
Q psy7411 44 IAGLIIPTSGTAYIDGHDIWY-EMGKVRESLGLCPQYDLLFEELTVEDHLQFFA 96 (474)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 96 (474)
|+++++ ++|++++||.|+.. ...+.|+.+||+||+..||+ .||.||+.++.
T Consensus 67 iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~-~tv~enl~~~~ 118 (390)
T 3gd7_A 67 FLRLLN-TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFS-GTFRKNLDPNA 118 (390)
T ss_dssp HHTCSE-EEEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCS-EEHHHHHCTTC
T ss_pred HhCCCC-CCeEEEECCEECCcCChHHHhCCEEEEcCCcccCc-cCHHHHhhhcc
Confidence 456666 89999999999864 45678999999999999997 69999998654
No 243
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.21 E-value=0.0016 Score=60.11 Aligned_cols=30 Identities=23% Similarity=0.257 Sum_probs=25.6
Q ss_pred EEeCCcEEEEeCCCCCChhHHHHhhcCCCC
Q psy7411 371 DMYQNQITVLLGHNGAGKSTTMSMLTGLII 400 (474)
Q Consensus 371 ~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~ 400 (474)
.+.+|.+++++||+||||||+.+.|...++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 356889999999999999999999987553
No 244
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.20 E-value=0.0006 Score=62.60 Aligned_cols=35 Identities=26% Similarity=0.506 Sum_probs=26.9
Q ss_pred CcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeec
Q psy7411 375 NQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDI 413 (474)
Q Consensus 375 Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI 413 (474)
..+++|.|++||||||+.+.|++.+ |...+++.++
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d~~ 52 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGDAL 52 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCCcC
Confidence 4579999999999999999998764 4445554443
No 245
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=96.17 E-value=0.0014 Score=64.92 Aligned_cols=27 Identities=26% Similarity=0.330 Sum_probs=23.4
Q ss_pred eCCcEEEEeCCCCCChhHHHHhhcCCC
Q psy7411 373 YQNQITVLLGHNGAGKSTTMSMLTGLI 399 (474)
Q Consensus 373 ~~Gei~gLLGpNGAGKTTLL~~L~GL~ 399 (474)
.++..++++|++|+|||||++.|+|..
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 445589999999999999999999953
No 246
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.11 E-value=0.0017 Score=59.47 Aligned_cols=22 Identities=41% Similarity=0.483 Sum_probs=20.3
Q ss_pred EEEEeCCCCCChhHHHHhhcCC
Q psy7411 377 ITVLLGHNGAGKSTTMSMLTGL 398 (474)
Q Consensus 377 i~gLLGpNGAGKTTLL~~L~GL 398 (474)
+++|.|+|||||||+.++|+++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFREL 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHHHC
Confidence 6899999999999999999983
No 247
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.10 E-value=0.00098 Score=63.54 Aligned_cols=39 Identities=23% Similarity=0.566 Sum_probs=35.4
Q ss_pred ccccccCCCceeEEechhhhhhHHHHHHhhCccCCcccccchhcccccccee
Q psy7411 44 IAGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFF 95 (474)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 95 (474)
|+++++|++|+++++| ++||+||+..+|+. ||.||+.|.
T Consensus 54 l~Gl~~p~~G~i~~~g------------~i~~v~q~~~~~~~-tv~enl~~~ 92 (229)
T 2pze_A 54 IMGELEPSEGKIKHSG------------RISFCSQFSWIMPG-TIKENIIFG 92 (229)
T ss_dssp HTTSSCCSEEEEEECS------------CEEEECSSCCCCSB-CHHHHHHTT
T ss_pred HhCCCcCCccEEEECC------------EEEEEecCCcccCC-CHHHHhhcc
Confidence 6788999999999999 49999999999986 999998774
No 248
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.05 E-value=0.0013 Score=66.91 Aligned_cols=74 Identities=18% Similarity=0.182 Sum_probs=46.4
Q ss_pred EEeCCcEEEEeCCCCCChhHHHHhhcCCC-CCCeeEEEECCeecCcchHHhhcceEEEcCCCCCCCCCCHHHHHHHH
Q psy7411 371 DMYQNQITVLLGHNGAGKSTTMSMLTGLI-IPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFF 446 (474)
Q Consensus 371 ~i~~Gei~gLLGpNGAGKTTLL~~L~GL~-~PtsG~i~i~G~dI~~~~~~ir~~IG~~~Q~~~L~~~LTV~E~L~~~ 446 (474)
-+++|+++.+.||+|+|||||+..++... ++....++++.+..... ...+.+|+-+++..+....++.+.+...
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~--~~a~~lG~~~~~l~i~~~~~~e~~l~~~ 131 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDP--EYAKKLGVDTDSLLVSQPDTGEQALEIA 131 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCH--HHHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCH--HHHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 57899999999999999999987776543 33334455655432221 1233456655554444455776665543
No 249
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.99 E-value=0.0031 Score=56.55 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=20.3
Q ss_pred EEEEeCCCCCChhHHHHhhcCCC
Q psy7411 377 ITVLLGHNGAGKSTTMSMLTGLI 399 (474)
Q Consensus 377 i~gLLGpNGAGKTTLL~~L~GL~ 399 (474)
.++++|++|+|||||++.++|..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999999963
No 250
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.94 E-value=0.0011 Score=64.68 Aligned_cols=51 Identities=24% Similarity=0.204 Sum_probs=40.6
Q ss_pred cccc--ccCCCceeEEechhhhhh-HHHH-HHhhCccCCcccccchhccccccce
Q psy7411 44 IAGL--IIPTSGTAYIDGHDIWYE-MGKV-RESLGLCPQYDLLFEELTVEDHLQF 94 (474)
Q Consensus 44 ~~~~--~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~f 94 (474)
|+++ ++|++|+++++|.++.+. ..+. |+.+||+||+..+|+.+||.||+.+
T Consensus 66 l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~ 120 (267)
T 2zu0_C 66 LAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQT 120 (267)
T ss_dssp HHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHH
T ss_pred HhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCccccccccHHHHHHH
Confidence 4566 469999999999998642 2222 4569999999999999999999865
No 251
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=95.78 E-value=0.0063 Score=61.79 Aligned_cols=31 Identities=26% Similarity=0.443 Sum_probs=25.5
Q ss_pred eeeeeeEEeCCcEEEEeCCCCCChhHHHHhhc
Q psy7411 365 VDNLTLDMYQNQITVLLGHNGAGKSTTMSMLT 396 (474)
Q Consensus 365 L~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~ 396 (474)
+++..+++.+ .+++|.|+|||||||++.+|.
T Consensus 16 ~~~~~i~f~~-gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 16 HVNSRIKFEK-GIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECCS-EEEEEEECTTSSHHHHHHHHH
T ss_pred ccceEEecCC-CeEEEECCCCCCHHHHHHHHH
Confidence 4666777655 589999999999999998775
No 252
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.77 E-value=0.0037 Score=56.08 Aligned_cols=24 Identities=42% Similarity=0.526 Sum_probs=21.7
Q ss_pred eCCcEEEEeCCCCCChhHHHHhhc
Q psy7411 373 YQNQITVLLGHNGAGKSTTMSMLT 396 (474)
Q Consensus 373 ~~Gei~gLLGpNGAGKTTLL~~L~ 396 (474)
.+|.++++.|++||||||+.+.|+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 467899999999999999999998
No 253
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.68 E-value=0.0013 Score=63.73 Aligned_cols=41 Identities=24% Similarity=0.272 Sum_probs=36.9
Q ss_pred ccccccCCCceeEEechhhhhhHHHHHHhhCccCCcccccchhccccccceee
Q psy7411 44 IAGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFA 96 (474)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 96 (474)
|+++++|++|+++ +|+++||+||+..+|..+||.||+.|..
T Consensus 51 l~Gl~~p~~G~I~------------~~~~i~~v~q~~~~~~~~tv~enl~~~~ 91 (253)
T 2nq2_C 51 LLGIHRPIQGKIE------------VYQSIGFVPQFFSSPFAYSVLDIVLMGR 91 (253)
T ss_dssp HTTSSCCSEEEEE------------ECSCEEEECSCCCCSSCCBHHHHHHGGG
T ss_pred HhCCCCCCCcEEE------------EeccEEEEcCCCccCCCCCHHHHHHHhh
Confidence 6788999999998 4778999999999999999999998754
No 254
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.61 E-value=0.0039 Score=57.21 Aligned_cols=38 Identities=21% Similarity=0.295 Sum_probs=29.5
Q ss_pred CcEEEEeCCCCCChhHHHHhhcCCCCCC---eeEEEECCee
Q psy7411 375 NQITVLLGHNGAGKSTTMSMLTGLIIPT---SGTAYIDGHD 412 (474)
Q Consensus 375 Gei~gLLGpNGAGKTTLL~~L~GL~~Pt---sG~i~i~G~d 412 (474)
-.++++.|++|+||||+++.|.+.+++. -|.+..++++
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 3678999999999999999999875543 4777776544
No 255
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.52 E-value=0.0029 Score=60.61 Aligned_cols=41 Identities=27% Similarity=0.316 Sum_probs=32.2
Q ss_pred EEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeec
Q psy7411 371 DMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDI 413 (474)
Q Consensus 371 ~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI 413 (474)
...++.++.+.|++||||||+.+.|+..+. .+.+.+++..+
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~ 68 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSF 68 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHH
Confidence 345678899999999999999999988654 24567777554
No 256
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.50 E-value=0.0029 Score=66.36 Aligned_cols=42 Identities=24% Similarity=0.276 Sum_probs=37.3
Q ss_pred CCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeecCc
Q psy7411 374 QNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY 415 (474)
Q Consensus 374 ~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI~~ 415 (474)
++.+++++|+||+||||++..|++.+.+..+++.+-+.|+.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r 137 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYR 137 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccc
Confidence 578999999999999999999999998888899887777653
No 257
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.49 E-value=0.0073 Score=56.80 Aligned_cols=27 Identities=44% Similarity=0.593 Sum_probs=22.8
Q ss_pred EEEeCCCCCChhHHHHhhcCCCCCCee
Q psy7411 378 TVLLGHNGAGKSTTMSMLTGLIIPTSG 404 (474)
Q Consensus 378 ~gLLGpNGAGKTTLL~~L~GL~~PtsG 404 (474)
++|+|++|+|||||++.|+|...+.++
T Consensus 32 i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 32 IVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred EEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 689999999999999999997665544
No 258
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.43 E-value=0.0019 Score=61.82 Aligned_cols=40 Identities=18% Similarity=0.314 Sum_probs=34.8
Q ss_pred ccccccCCCceeEEechhhhhhHHHHHHhhCccCCcccccchhccccccceee
Q psy7411 44 IAGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFA 96 (474)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 96 (474)
|+++++|++|+++++| ++||+||+..+ +.+||.||+.|..
T Consensus 51 l~Gl~~p~~G~I~~~g------------~i~~v~Q~~~~-~~~tv~enl~~~~ 90 (237)
T 2cbz_A 51 LLAEMDKVEGHVAIKG------------SVAYVPQQAWI-QNDSLRENILFGC 90 (237)
T ss_dssp HTTCSEEEEEEEEECS------------CEEEECSSCCC-CSEEHHHHHHTTS
T ss_pred HhcCCCCCCceEEECC------------EEEEEcCCCcC-CCcCHHHHhhCcc
Confidence 6788999999999999 49999999876 4889999997753
No 259
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.41 E-value=0.0046 Score=58.79 Aligned_cols=45 Identities=20% Similarity=0.302 Sum_probs=29.9
Q ss_pred eeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeec
Q psy7411 365 VDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDI 413 (474)
Q Consensus 365 L~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI 413 (474)
+++++...++| +.|.||+|+||||+++++++..... .+.+++.++
T Consensus 37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~~~ 81 (257)
T 1lv7_A 37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSDF 81 (257)
T ss_dssp C-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCSS
T ss_pred HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHHHH
Confidence 33444444444 7899999999999999999876432 466776655
No 260
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.37 E-value=0.0059 Score=57.62 Aligned_cols=27 Identities=22% Similarity=0.310 Sum_probs=23.2
Q ss_pred EEeCCcEEEEeCCCCCChhHHHHhhcC
Q psy7411 371 DMYQNQITVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 371 ~i~~Gei~gLLGpNGAGKTTLL~~L~G 397 (474)
+-.+|.+++|+|++||||||+.++|++
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 356789999999999999999999985
No 261
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.37 E-value=0.0014 Score=67.09 Aligned_cols=37 Identities=30% Similarity=0.399 Sum_probs=32.2
Q ss_pred eeeeeeeeEEeCCcE--EEEeCCCCCChhHHHHhhcCCC
Q psy7411 363 KAVDNLTLDMYQNQI--TVLLGHNGAGKSTTMSMLTGLI 399 (474)
Q Consensus 363 ~aL~~lsL~i~~Gei--~gLLGpNGAGKTTLL~~L~GL~ 399 (474)
.+++.+++.+++|++ ++|+|++|+||||+.++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 467778888889988 9999999999999999999843
No 262
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.10 E-value=0.0094 Score=52.28 Aligned_cols=23 Identities=26% Similarity=0.274 Sum_probs=20.4
Q ss_pred EEEEeCCCCCChhHHHHhhcCCC
Q psy7411 377 ITVLLGHNGAGKSTTMSMLTGLI 399 (474)
Q Consensus 377 i~gLLGpNGAGKTTLL~~L~GL~ 399 (474)
+++|.|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68899999999999999998643
No 263
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.98 E-value=0.012 Score=52.26 Aligned_cols=25 Identities=28% Similarity=0.490 Sum_probs=22.3
Q ss_pred CcEEEEeCCCCCChhHHHHhhcCCC
Q psy7411 375 NQITVLLGHNGAGKSTTMSMLTGLI 399 (474)
Q Consensus 375 Gei~gLLGpNGAGKTTLL~~L~GL~ 399 (474)
+.++.+.|++||||||+.+.|+..+
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 5788999999999999999998754
No 264
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=94.86 E-value=0.014 Score=66.04 Aligned_cols=39 Identities=23% Similarity=0.503 Sum_probs=32.9
Q ss_pred cEEEEeeEEEEcCCceeeeeeeeEEeCCcEEEEeCCCCCChhHHH
Q psy7411 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTM 392 (474)
Q Consensus 348 ~I~i~~Lsk~y~~~~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL 392 (474)
.|++++.. ..=|+||+++|++|+++++.|.+|||||||.
T Consensus 15 ~I~i~gar------~hNLkni~v~iP~~~l~viTGvSGSGKSSLa 53 (842)
T 2vf7_A 15 FVQVRGAR------QHNLKDISVKVPRDALVVFTGVSGSGKSSLA 53 (842)
T ss_dssp EEEEEEEC------STTCCSEEEEEESSSEEEEESSTTSSHHHHH
T ss_pred eEEEeecc------ccCCCCeeEEecCCCEEEEECCCCCCHHHHH
Confidence 36666532 3459999999999999999999999999997
No 265
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=94.83 E-value=0.025 Score=50.80 Aligned_cols=36 Identities=22% Similarity=0.356 Sum_probs=27.4
Q ss_pred EEEeCCCCCChhHHHHhhcC-C----CCCCee----EEEECCeec
Q psy7411 378 TVLLGHNGAGKSTTMSMLTG-L----IIPTSG----TAYIDGHDI 413 (474)
Q Consensus 378 ~gLLGpNGAGKTTLL~~L~G-L----~~PtsG----~i~i~G~dI 413 (474)
++++|+.|+|||||++.+++ - ..|+.| .+.++|+.+
T Consensus 23 i~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 67 (184)
T 3ihw_A 23 VGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSY 67 (184)
T ss_dssp EEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEE
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEE
Confidence 67999999999999965544 3 567777 677777654
No 266
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.81 E-value=0.013 Score=52.19 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=21.1
Q ss_pred CcEEEEeCCCCCChhHHHHhhcC
Q psy7411 375 NQITVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 375 Gei~gLLGpNGAGKTTLL~~L~G 397 (474)
|.++.+.|+.||||||+.+.|+-
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 67899999999999999999876
No 267
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.80 E-value=0.014 Score=50.85 Aligned_cols=19 Identities=32% Similarity=0.593 Sum_probs=18.1
Q ss_pred EEEEeCCCCCChhHHHHhh
Q psy7411 377 ITVLLGHNGAGKSTTMSML 395 (474)
Q Consensus 377 i~gLLGpNGAGKTTLL~~L 395 (474)
++++.|+.||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6889999999999999999
No 268
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=94.72 E-value=0.016 Score=59.35 Aligned_cols=36 Identities=28% Similarity=0.338 Sum_probs=29.9
Q ss_pred CcEEEEeCCCCCChhHHHHhhcC-----------CCCCCeeEEEECC
Q psy7411 375 NQITVLLGHNGAGKSTTMSMLTG-----------LIIPTSGTAYIDG 410 (474)
Q Consensus 375 Gei~gLLGpNGAGKTTLL~~L~G-----------L~~PtsG~i~i~G 410 (474)
|-.++++|.+|+|||||++.|+| ...|+.|.+.+.+
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 34689999999999999999998 4467788887765
No 269
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=94.71 E-value=0.0086 Score=64.06 Aligned_cols=49 Identities=14% Similarity=0.115 Sum_probs=40.0
Q ss_pred eeeeeEEeCCcEEEEeCCCCCChhHHHHhhcC--CCCCCeeEEEECCeecC
Q psy7411 366 DNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG--LIIPTSGTAYIDGHDIW 414 (474)
Q Consensus 366 ~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~G--L~~PtsG~i~i~G~dI~ 414 (474)
+.+.+++.++..+.+.|++||||||+++.|.. +..++.|++.+.+.|..
T Consensus 158 ~pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK 208 (512)
T 2ius_A 158 EPVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPK 208 (512)
T ss_dssp CEEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCS
T ss_pred CEEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCc
Confidence 34677888999999999999999999998876 66777788877766654
No 270
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=94.68 E-value=0.016 Score=51.79 Aligned_cols=36 Identities=33% Similarity=0.479 Sum_probs=27.4
Q ss_pred EEEEeCCCCCChhHHHHhhcCCC----CCCee----EEEECCee
Q psy7411 377 ITVLLGHNGAGKSTTMSMLTGLI----IPTSG----TAYIDGHD 412 (474)
Q Consensus 377 i~gLLGpNGAGKTTLL~~L~GL~----~PtsG----~i~i~G~d 412 (474)
.++++|++|+|||||++.+++-. .||.| .+.+++..
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~ 61 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFK 61 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEEEEEECCEE
Confidence 47899999999999999999853 45656 45555443
No 271
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.67 E-value=0.012 Score=52.79 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=22.3
Q ss_pred eCCcEEEEeCCCCCChhHHHHhhcC
Q psy7411 373 YQNQITVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 373 ~~Gei~gLLGpNGAGKTTLL~~L~G 397 (474)
.++.++.+.|++||||||+.+.|+.
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4577899999999999999999875
No 272
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=94.67 E-value=0.012 Score=56.67 Aligned_cols=24 Identities=38% Similarity=0.563 Sum_probs=21.5
Q ss_pred EEEEeCCCCCChhHHHHhhcCCCC
Q psy7411 377 ITVLLGHNGAGKSTTMSMLTGLII 400 (474)
Q Consensus 377 i~gLLGpNGAGKTTLL~~L~GL~~ 400 (474)
.++++|++|+|||||++.|+|...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 478999999999999999999753
No 273
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.58 E-value=0.011 Score=66.50 Aligned_cols=42 Identities=19% Similarity=0.240 Sum_probs=33.9
Q ss_pred eEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeec
Q psy7411 370 LDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDI 413 (474)
Q Consensus 370 L~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI 413 (474)
+.+++++.+.|.||+|+||||++++|++..++. .+.+++.++
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~--~i~v~~~~l 274 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGAF--FFLINGPEI 274 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCE--EEEEEHHHH
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCc--EEEEEchHh
Confidence 457889999999999999999999999987543 356665443
No 274
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.53 E-value=0.016 Score=53.48 Aligned_cols=24 Identities=33% Similarity=0.426 Sum_probs=21.7
Q ss_pred CCcEEEEeCCCCCChhHHHHhhcC
Q psy7411 374 QNQITVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 374 ~Gei~gLLGpNGAGKTTLL~~L~G 397 (474)
++-+++|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999987
No 275
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=94.45 E-value=0.01 Score=60.40 Aligned_cols=36 Identities=31% Similarity=0.189 Sum_probs=31.1
Q ss_pred CCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEEC
Q psy7411 374 QNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYID 409 (474)
Q Consensus 374 ~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~ 409 (474)
.+..+.++|++||||||+++.+++...+..+.+.+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~ 69 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIII 69 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEE
Confidence 566789999999999999999998777778888775
No 276
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.45 E-value=0.017 Score=52.26 Aligned_cols=27 Identities=22% Similarity=0.299 Sum_probs=23.9
Q ss_pred eCCcEEEEeCCCCCChhHHHHhhcCCC
Q psy7411 373 YQNQITVLLGHNGAGKSTTMSMLTGLI 399 (474)
Q Consensus 373 ~~Gei~gLLGpNGAGKTTLL~~L~GL~ 399 (474)
.+|.+++|.|+.||||||+.+.|+..+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 2 SRGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 367889999999999999999998755
No 277
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=94.43 E-value=0.0055 Score=60.71 Aligned_cols=37 Identities=22% Similarity=0.522 Sum_probs=33.8
Q ss_pred ccccccCCCceeEEechhhhhhHHHHHHhhCccCCcccccchhccccccc
Q psy7411 44 IAGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQ 93 (474)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (474)
|+++++|++|+++++| ++||+||+..+|+. ||.||+.
T Consensus 84 l~Gl~~p~~G~I~~~g------------~i~~v~Q~~~l~~~-tv~enl~ 120 (290)
T 2bbs_A 84 IMGELEPSEGKIKHSG------------RISFCSQNSWIMPG-TIKENII 120 (290)
T ss_dssp HTTSSCEEEEEEECCS------------CEEEECSSCCCCSS-BHHHHHH
T ss_pred HhcCCCCCCcEEEECC------------EEEEEeCCCccCcc-cHHHHhh
Confidence 6788999999999999 49999999999986 9999986
No 278
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=94.32 E-value=0.012 Score=57.09 Aligned_cols=34 Identities=26% Similarity=0.390 Sum_probs=28.0
Q ss_pred cEEEEeCCCCCChhHHHHhhcCCCCCCeeE-EEEC
Q psy7411 376 QITVLLGHNGAGKSTTMSMLTGLIIPTSGT-AYID 409 (474)
Q Consensus 376 ei~gLLGpNGAGKTTLL~~L~GL~~PtsG~-i~i~ 409 (474)
..+.+.||+|+||||+.+++++...++.|. +.++
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~ 82 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRID 82 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEee
Confidence 578899999999999999999988777664 3443
No 279
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.28 E-value=0.019 Score=51.67 Aligned_cols=21 Identities=33% Similarity=0.479 Sum_probs=19.7
Q ss_pred EEEEeCCCCCChhHHHHhhcC
Q psy7411 377 ITVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 377 i~gLLGpNGAGKTTLL~~L~G 397 (474)
++++.|+.||||||+.+.|+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 578999999999999999987
No 280
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=94.26 E-value=0.003 Score=61.76 Aligned_cols=52 Identities=13% Similarity=0.033 Sum_probs=27.2
Q ss_pred ccccccCCCceeEEechhhhhhHHHHHHhhCccCCcccccchhccccccceeee
Q psy7411 44 IAGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAK 97 (474)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 97 (474)
|+++.+|++|++.++|.++... ..|+.+||+||.+.++..+||.||+.|...
T Consensus 22 L~g~~~~~~G~i~~~g~~i~~~--~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~ 73 (270)
T 3sop_A 22 LFKSQVSRKASSWNREEKIPKT--VEIKAIGHVIEEGGVKMKLTVIDTPGFGDQ 73 (270)
T ss_dssp HHHHHC------------CCCC--CSCCEEEESCC----CCEEEEECCCC--CC
T ss_pred HhCCCCCCCCccccCCcccCcc--eeeeeeEEEeecCCCcCCceEEechhhhhh
Confidence 5678899999999999988432 346789999999999999999999887543
No 281
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.22 E-value=0.012 Score=56.51 Aligned_cols=33 Identities=24% Similarity=0.332 Sum_probs=24.9
Q ss_pred CCcEEEEeCCCCCChhHHHHhhc---CCCCCCeeEE
Q psy7411 374 QNQITVLLGHNGAGKSTTMSMLT---GLIIPTSGTA 406 (474)
Q Consensus 374 ~Gei~gLLGpNGAGKTTLL~~L~---GL~~PtsG~i 406 (474)
+.-++++.||+||||||+.+.|+ |+...+.|.+
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~ 43 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAM 43 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcH
Confidence 34589999999999999999998 5444444443
No 282
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.20 E-value=0.0054 Score=56.12 Aligned_cols=25 Identities=32% Similarity=0.522 Sum_probs=21.7
Q ss_pred EEEEeCCCCCChhHHHHhhcCCCCC
Q psy7411 377 ITVLLGHNGAGKSTTMSMLTGLIIP 401 (474)
Q Consensus 377 i~gLLGpNGAGKTTLL~~L~GL~~P 401 (474)
++++.|++||||||+++.|...+++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6789999999999999999876544
No 283
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.17 E-value=0.023 Score=50.85 Aligned_cols=24 Identities=33% Similarity=0.356 Sum_probs=20.8
Q ss_pred CCcEEEEeCCCCCChhHHHHhhcC
Q psy7411 374 QNQITVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 374 ~Gei~gLLGpNGAGKTTLL~~L~G 397 (474)
.+.++.++|+.||||||+.+.|+.
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 356889999999999999999974
No 284
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=94.16 E-value=0.016 Score=56.95 Aligned_cols=41 Identities=17% Similarity=0.272 Sum_probs=32.2
Q ss_pred EEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeec
Q psy7411 371 DMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDI 413 (474)
Q Consensus 371 ~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI 413 (474)
.+.++..+.|.||+|+||||+++++++... .+.+.+++.++
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~~--~~~i~v~~~~l 85 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKGPEL 85 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHTT--CEEEEECHHHH
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHhC--CCEEEEEhHHH
Confidence 346778899999999999999999998653 56677765443
No 285
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.15 E-value=0.014 Score=52.31 Aligned_cols=24 Identities=29% Similarity=0.278 Sum_probs=21.7
Q ss_pred eCCcEEEEeCCCCCChhHHHHhhc
Q psy7411 373 YQNQITVLLGHNGAGKSTTMSMLT 396 (474)
Q Consensus 373 ~~Gei~gLLGpNGAGKTTLL~~L~ 396 (474)
.++.++.+.|++||||||+.+.|+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHH
Confidence 456788999999999999999998
No 286
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.09 E-value=0.022 Score=52.88 Aligned_cols=21 Identities=38% Similarity=0.501 Sum_probs=18.2
Q ss_pred EEEEeCCCCCChhHHHHhhcC
Q psy7411 377 ITVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 377 i~gLLGpNGAGKTTLL~~L~G 397 (474)
.+.|.||+|+|||||++.|..
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 367999999999999998853
No 287
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.08 E-value=0.024 Score=51.32 Aligned_cols=27 Identities=26% Similarity=0.471 Sum_probs=23.2
Q ss_pred CCcEEEEeCCCCCChhHHHHhhcCCCC
Q psy7411 374 QNQITVLLGHNGAGKSTTMSMLTGLII 400 (474)
Q Consensus 374 ~Gei~gLLGpNGAGKTTLL~~L~GL~~ 400 (474)
+|.++++.|+.||||||+.+.|+.-+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 467899999999999999999986443
No 288
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=94.07 E-value=0.023 Score=65.06 Aligned_cols=31 Identities=26% Similarity=0.524 Sum_probs=28.9
Q ss_pred ceeeeeeeeEEeCCcEEEEeCCCCCChhHHH
Q psy7411 362 KKAVDNLTLDMYQNQITVLLGHNGAGKSTTM 392 (474)
Q Consensus 362 ~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL 392 (474)
..=|+||+++|++++++++.|.+|||||||.
T Consensus 33 ~hNLkni~v~iP~~~lvv~tG~SGSGKSSLa 63 (993)
T 2ygr_A 33 EHNLRSVDLDLPRDALIVFTGLSGSGKSSLA 63 (993)
T ss_dssp SSSCCSEEEEEESSSEEEEEESTTSSHHHHH
T ss_pred ccccCceeeeccCCCEEEEECCCCCcHHHHH
Confidence 3469999999999999999999999999986
No 289
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=94.05 E-value=0.024 Score=64.83 Aligned_cols=31 Identities=26% Similarity=0.536 Sum_probs=28.9
Q ss_pred ceeeeeeeeEEeCCcEEEEeCCCCCChhHHH
Q psy7411 362 KKAVDNLTLDMYQNQITVLLGHNGAGKSTTM 392 (474)
Q Consensus 362 ~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL 392 (474)
..=|+||+++|++++++++.|.+|||||||.
T Consensus 31 ~hNLkni~v~iP~~~lvv~tG~SGSGKSSLa 61 (972)
T 2r6f_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLA 61 (972)
T ss_dssp SSSCCSEEEEEETTSEEEEEESTTSSHHHHH
T ss_pred cccCCceeeeccCCcEEEEECCCCCCHHHHH
Confidence 3469999999999999999999999999986
No 290
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.02 E-value=0.024 Score=49.98 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=19.9
Q ss_pred cEEEEeCCCCCChhHHHHhhcC
Q psy7411 376 QITVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 376 ei~gLLGpNGAGKTTLL~~L~G 397 (474)
.++.+.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4688999999999999999985
No 291
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.02 E-value=0.022 Score=54.65 Aligned_cols=22 Identities=14% Similarity=0.289 Sum_probs=19.9
Q ss_pred EEEEeCCCCCChhHHHHhhcCC
Q psy7411 377 ITVLLGHNGAGKSTTMSMLTGL 398 (474)
Q Consensus 377 i~gLLGpNGAGKTTLL~~L~GL 398 (474)
+++++||+||||||+.+.|++-
T Consensus 3 li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhc
Confidence 6789999999999999999864
No 292
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=94.00 E-value=0.021 Score=65.12 Aligned_cols=31 Identities=29% Similarity=0.539 Sum_probs=29.0
Q ss_pred ceeeeeeeeEEeCCcEEEEeCCCCCChhHHH
Q psy7411 362 KKAVDNLTLDMYQNQITVLLGHNGAGKSTTM 392 (474)
Q Consensus 362 ~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL 392 (474)
..=|+||+++|++++++++.|++|||||||.
T Consensus 11 ~hNLkni~~~ip~~~l~v~tG~SGSGKSsLa 41 (916)
T 3pih_A 11 VHNLKNITVRIPKNRLVVITGVSGSGKSSLA 41 (916)
T ss_dssp STTCCSBCCEEETTSEEEEEESTTSSSHHHH
T ss_pred ccccCcceeccCCCcEEEEECCCCCcHHHHH
Confidence 3469999999999999999999999999996
No 293
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.93 E-value=0.025 Score=55.54 Aligned_cols=35 Identities=23% Similarity=0.250 Sum_probs=26.6
Q ss_pred CCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECC
Q psy7411 374 QNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDG 410 (474)
Q Consensus 374 ~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G 410 (474)
++.++.+.||+||||||+.+.|..-.+ .|...+++
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~ 66 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 66 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence 467889999999999999999975332 24556654
No 294
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.93 E-value=0.021 Score=50.91 Aligned_cols=22 Identities=36% Similarity=0.424 Sum_probs=19.7
Q ss_pred EEEEeCCCCCChhHHHHhhcCC
Q psy7411 377 ITVLLGHNGAGKSTTMSMLTGL 398 (474)
Q Consensus 377 i~gLLGpNGAGKTTLL~~L~GL 398 (474)
++.|.|++||||||+.+.|+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999999999864
No 295
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.92 E-value=0.0028 Score=57.17 Aligned_cols=47 Identities=17% Similarity=0.130 Sum_probs=38.3
Q ss_pred cccccccCCCceeEEechhhhhhHHHHHHhhCccCCcccccchhcccccccee
Q psy7411 43 DIAGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFF 95 (474)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 95 (474)
-|++++ |++|+++++|+++..... .+ .++||++.+| .+||.||+.++
T Consensus 52 ~l~g~l-~~~G~V~~~g~~i~~~~~-~~---~~~~q~~~l~-~ltv~e~l~~~ 98 (158)
T 1htw_A 52 GMLQGI-GHQGNVKSPTYTLVEEYN-IA---GKMIYHFDLY-RLADPEELEFM 98 (158)
T ss_dssp HHHHHT-TCCSCCCCCTTTCEEEEE-ET---TEEEEEEECT-TCSCTTHHHHS
T ss_pred HHHHhC-CCCCeEEECCEeeeeecc-CC---Ccceeccccc-cCCcHHHHHHc
Confidence 467788 999999999999975432 22 3899999999 99999998764
No 296
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.90 E-value=0.024 Score=51.18 Aligned_cols=24 Identities=33% Similarity=0.455 Sum_probs=21.5
Q ss_pred CcEEEEeCCCCCChhHHHHhhcCC
Q psy7411 375 NQITVLLGHNGAGKSTTMSMLTGL 398 (474)
Q Consensus 375 Gei~gLLGpNGAGKTTLL~~L~GL 398 (474)
..+++|.|+.||||||+.+.|+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 457999999999999999999864
No 297
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.89 E-value=0.027 Score=50.20 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=20.4
Q ss_pred CCcEEEEeCCCCCChhHHHHhhcC
Q psy7411 374 QNQITVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 374 ~Gei~gLLGpNGAGKTTLL~~L~G 397 (474)
++.++++.|+.||||||+.+.|+-
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999998864
No 298
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.87 E-value=0.025 Score=50.33 Aligned_cols=24 Identities=29% Similarity=0.374 Sum_probs=17.1
Q ss_pred CCcEEEEeCCCCCChhHHHHhhcC
Q psy7411 374 QNQITVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 374 ~Gei~gLLGpNGAGKTTLL~~L~G 397 (474)
++.++.+.|+.||||||+.+.|+.
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999974
No 299
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.86 E-value=0.025 Score=51.48 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=22.7
Q ss_pred eCCcEEEEeCCCCCChhHHHHhhcC
Q psy7411 373 YQNQITVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 373 ~~Gei~gLLGpNGAGKTTLL~~L~G 397 (474)
.+|.++++.|+.||||||+.+.|+-
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHH
Confidence 4688999999999999999999975
No 300
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.82 E-value=0.026 Score=51.47 Aligned_cols=26 Identities=35% Similarity=0.372 Sum_probs=22.9
Q ss_pred EeCCcEEEEeCCCCCChhHHHHhhcC
Q psy7411 372 MYQNQITVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 372 i~~Gei~gLLGpNGAGKTTLL~~L~G 397 (474)
..+|.+++|.|+.||||||+.+.|+-
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 45788999999999999999999974
No 301
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.82 E-value=0.026 Score=50.59 Aligned_cols=25 Identities=24% Similarity=0.429 Sum_probs=22.3
Q ss_pred eCCcEEEEeCCCCCChhHHHHhhcC
Q psy7411 373 YQNQITVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 373 ~~Gei~gLLGpNGAGKTTLL~~L~G 397 (474)
.++.+++|.|+.||||||+.+.|+.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHH
Confidence 4677899999999999999999974
No 302
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.79 E-value=0.045 Score=47.12 Aligned_cols=21 Identities=24% Similarity=0.403 Sum_probs=19.2
Q ss_pred EEEEeCCCCCChhHHHHhhcC
Q psy7411 377 ITVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 377 i~gLLGpNGAGKTTLL~~L~G 397 (474)
.++++|+.|+|||||++.+++
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 368999999999999999987
No 303
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.74 E-value=0.005 Score=64.31 Aligned_cols=50 Identities=10% Similarity=0.146 Sum_probs=39.9
Q ss_pred ceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCee-EEEECCe
Q psy7411 362 KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSG-TAYIDGH 411 (474)
Q Consensus 362 ~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG-~i~i~G~ 411 (474)
.+.|+++...+++|+++.+.|++|+||||++..+++...+..| .+.+.+.
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 4578888878999999999999999999999998886655444 4554443
No 304
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=93.64 E-value=0.046 Score=49.57 Aligned_cols=22 Identities=41% Similarity=0.662 Sum_probs=19.7
Q ss_pred EEEEeCCCCCChhHHHHhhcCC
Q psy7411 377 ITVLLGHNGAGKSTTMSMLTGL 398 (474)
Q Consensus 377 i~gLLGpNGAGKTTLL~~L~GL 398 (474)
.++++|++|+|||||++.++|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 3689999999999999999874
No 305
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=93.57 E-value=0.03 Score=48.33 Aligned_cols=22 Identities=36% Similarity=0.620 Sum_probs=19.5
Q ss_pred EEEeCCCCCChhHHHHhhcCCC
Q psy7411 378 TVLLGHNGAGKSTTMSMLTGLI 399 (474)
Q Consensus 378 ~gLLGpNGAGKTTLL~~L~GL~ 399 (474)
++++|+.|+|||||++.++|-.
T Consensus 5 i~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEECCCCCCHHHHHHHHcCcc
Confidence 6899999999999999999844
No 306
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=93.46 E-value=0.043 Score=47.27 Aligned_cols=22 Identities=36% Similarity=0.452 Sum_probs=19.5
Q ss_pred EEEeCCCCCChhHHHHhhcCCC
Q psy7411 378 TVLLGHNGAGKSTTMSMLTGLI 399 (474)
Q Consensus 378 ~gLLGpNGAGKTTLL~~L~GL~ 399 (474)
++++|+.|+|||||++.+.+-.
T Consensus 9 i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 9 VCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 6899999999999999998743
No 307
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=93.44 E-value=0.034 Score=48.24 Aligned_cols=23 Identities=39% Similarity=0.621 Sum_probs=19.8
Q ss_pred EEEEeCCCCCChhHHHHhhcCCC
Q psy7411 377 ITVLLGHNGAGKSTTMSMLTGLI 399 (474)
Q Consensus 377 i~gLLGpNGAGKTTLL~~L~GL~ 399 (474)
.++++|+.|+|||||++.+++-.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 36899999999999999998843
No 308
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=93.44 E-value=0.034 Score=54.21 Aligned_cols=23 Identities=26% Similarity=0.523 Sum_probs=20.9
Q ss_pred EEEEeCCCCCChhHHHHhhcCCC
Q psy7411 377 ITVLLGHNGAGKSTTMSMLTGLI 399 (474)
Q Consensus 377 i~gLLGpNGAGKTTLL~~L~GL~ 399 (474)
.++++|++|+|||||++.|+|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47899999999999999999954
No 309
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=93.42 E-value=0.036 Score=48.25 Aligned_cols=21 Identities=24% Similarity=0.502 Sum_probs=19.3
Q ss_pred EEEeCCCCCChhHHHHhhcCC
Q psy7411 378 TVLLGHNGAGKSTTMSMLTGL 398 (474)
Q Consensus 378 ~gLLGpNGAGKTTLL~~L~GL 398 (474)
++++|+.|+|||||++.+++-
T Consensus 12 i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 12 LLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEECCTTSCHHHHHHHHCSC
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 689999999999999999874
No 310
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=93.37 E-value=0.03 Score=49.92 Aligned_cols=23 Identities=22% Similarity=0.410 Sum_probs=20.6
Q ss_pred EEEEeCCCCCChhHHHHhhcCCC
Q psy7411 377 ITVLLGHNGAGKSTTMSMLTGLI 399 (474)
Q Consensus 377 i~gLLGpNGAGKTTLL~~L~GL~ 399 (474)
.++++|+.|+|||||++.+++-.
T Consensus 50 ~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998854
No 311
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=93.26 E-value=0.025 Score=53.17 Aligned_cols=25 Identities=28% Similarity=0.583 Sum_probs=21.1
Q ss_pred EeCCcEEEEeCCCCCChhHHHHhhc
Q psy7411 372 MYQNQITVLLGHNGAGKSTTMSMLT 396 (474)
Q Consensus 372 i~~Gei~gLLGpNGAGKTTLL~~L~ 396 (474)
+.+|+.+.+.||+||||||++..+.
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHH
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHH
Confidence 3578999999999999999887554
No 312
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=93.26 E-value=0.038 Score=55.60 Aligned_cols=25 Identities=36% Similarity=0.416 Sum_probs=22.2
Q ss_pred CcEEEEeCCCCCChhHHHHhhcCCC
Q psy7411 375 NQITVLLGHNGAGKSTTMSMLTGLI 399 (474)
Q Consensus 375 Gei~gLLGpNGAGKTTLL~~L~GL~ 399 (474)
.-.++++|++|+|||||++.|+|..
T Consensus 167 ~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 167 IPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468999999999999999999965
No 313
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.25 E-value=0.029 Score=49.33 Aligned_cols=22 Identities=36% Similarity=0.483 Sum_probs=19.8
Q ss_pred cEEEEeCCCCCChhHHHHhhcC
Q psy7411 376 QITVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 376 ei~gLLGpNGAGKTTLL~~L~G 397 (474)
-.++++|++|+|||||++.+++
T Consensus 19 ~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 19 LRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3578999999999999999985
No 314
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.19 E-value=0.035 Score=49.37 Aligned_cols=23 Identities=30% Similarity=0.586 Sum_probs=20.0
Q ss_pred EEEEeCCCCCChhHHHHhhcCCC
Q psy7411 377 ITVLLGHNGAGKSTTMSMLTGLI 399 (474)
Q Consensus 377 i~gLLGpNGAGKTTLL~~L~GL~ 399 (474)
++.+.|+.||||||+.+.|+.-+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999987643
No 315
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=93.17 E-value=0.048 Score=47.54 Aligned_cols=24 Identities=21% Similarity=0.488 Sum_probs=20.9
Q ss_pred CCcEEEEeCCCCCChhHHHHhhcC
Q psy7411 374 QNQITVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 374 ~Gei~gLLGpNGAGKTTLL~~L~G 397 (474)
+.-.++++|+.|+|||||++.+++
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 345678999999999999999987
No 316
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.14 E-value=0.04 Score=49.40 Aligned_cols=23 Identities=30% Similarity=0.585 Sum_probs=20.2
Q ss_pred EEEEeCCCCCChhHHHHhhcCCC
Q psy7411 377 ITVLLGHNGAGKSTTMSMLTGLI 399 (474)
Q Consensus 377 i~gLLGpNGAGKTTLL~~L~GL~ 399 (474)
++++.|+.||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998644
No 317
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=93.11 E-value=0.044 Score=55.07 Aligned_cols=43 Identities=19% Similarity=0.183 Sum_probs=33.6
Q ss_pred EEeCCcEEEEeCCCCCChhHHHHhhcCC--CCC-----CeeEEEECCeec
Q psy7411 371 DMYQNQITVLLGHNGAGKSTTMSMLTGL--IIP-----TSGTAYIDGHDI 413 (474)
Q Consensus 371 ~i~~Gei~gLLGpNGAGKTTLL~~L~GL--~~P-----tsG~i~i~G~dI 413 (474)
.+++|+++.+.||+|+||||++..++.. .++ ..+.++++.+..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~ 167 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENT 167 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence 5789999999999999999999887763 332 345677877653
No 318
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=93.11 E-value=0.044 Score=54.35 Aligned_cols=34 Identities=35% Similarity=0.526 Sum_probs=27.8
Q ss_pred EEEEeCCCCCChhHHHHhhcCCCCCC--eeEEEECC
Q psy7411 377 ITVLLGHNGAGKSTTMSMLTGLIIPT--SGTAYIDG 410 (474)
Q Consensus 377 i~gLLGpNGAGKTTLL~~L~GL~~Pt--sG~i~i~G 410 (474)
.+.|.||+|+||||+++.+++...+. ...+.++.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~ 81 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYING 81 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEET
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeC
Confidence 78999999999999999999987765 34556653
No 319
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.10 E-value=0.032 Score=47.99 Aligned_cols=20 Identities=25% Similarity=0.459 Sum_probs=18.5
Q ss_pred EEEeCCCCCChhHHHHhhcC
Q psy7411 378 TVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 378 ~gLLGpNGAGKTTLL~~L~G 397 (474)
++++|+.|+|||||++.+.+
T Consensus 8 i~v~G~~~~GKssl~~~l~~ 27 (168)
T 1z2a_A 8 MVVVGNGAVGKSSMIQRYCK 27 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHc
Confidence 68999999999999999876
No 320
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=93.09 E-value=0.032 Score=55.52 Aligned_cols=42 Identities=24% Similarity=0.413 Sum_probs=33.3
Q ss_pred EEeCCcEEEEeCCCCCChhHHHHhhcCC-CCC------CeeEEEECCee
Q psy7411 371 DMYQNQITVLLGHNGAGKSTTMSMLTGL-IIP------TSGTAYIDGHD 412 (474)
Q Consensus 371 ~i~~Gei~gLLGpNGAGKTTLL~~L~GL-~~P------tsG~i~i~G~d 412 (474)
-+++|+++.+.||+|+||||++..++.- ..| ..+.++++.+.
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 5889999999999999999999877753 334 45667777665
No 321
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=93.08 E-value=0.042 Score=47.52 Aligned_cols=21 Identities=43% Similarity=0.727 Sum_probs=19.1
Q ss_pred EEEeCCCCCChhHHHHhhcCC
Q psy7411 378 TVLLGHNGAGKSTTMSMLTGL 398 (474)
Q Consensus 378 ~gLLGpNGAGKTTLL~~L~GL 398 (474)
++++|+.|+|||||++.+++.
T Consensus 5 i~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999863
No 322
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=93.03 E-value=0.029 Score=47.79 Aligned_cols=21 Identities=33% Similarity=0.412 Sum_probs=18.9
Q ss_pred EEEeCCCCCChhHHHHhhcCC
Q psy7411 378 TVLLGHNGAGKSTTMSMLTGL 398 (474)
Q Consensus 378 ~gLLGpNGAGKTTLL~~L~GL 398 (474)
++++|+.|+|||||++.+.+-
T Consensus 6 i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 6 LVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999999763
No 323
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.03 E-value=0.048 Score=50.45 Aligned_cols=25 Identities=36% Similarity=0.437 Sum_probs=21.9
Q ss_pred CCcEEEEeCCCCCChhHHHHhhcCC
Q psy7411 374 QNQITVLLGHNGAGKSTTMSMLTGL 398 (474)
Q Consensus 374 ~Gei~gLLGpNGAGKTTLL~~L~GL 398 (474)
+|-.+.+.|+.||||||+.+.|+.-
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5678899999999999999998753
No 324
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=92.97 E-value=0.035 Score=47.44 Aligned_cols=21 Identities=33% Similarity=0.480 Sum_probs=18.7
Q ss_pred EEEEeCCCCCChhHHHHhhcC
Q psy7411 377 ITVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 377 i~gLLGpNGAGKTTLL~~L~G 397 (474)
.++++|+.|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 368999999999999998875
No 325
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=92.95 E-value=0.045 Score=49.57 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=19.8
Q ss_pred EEEEeCCCCCChhHHHHhhcC
Q psy7411 377 ITVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 377 i~gLLGpNGAGKTTLL~~L~G 397 (474)
+++|.|++||||||+.+.|+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999977
No 326
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=92.91 E-value=0.035 Score=47.47 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=18.9
Q ss_pred EEEEeCCCCCChhHHHHhhcC
Q psy7411 377 ITVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 377 i~gLLGpNGAGKTTLL~~L~G 397 (474)
.++++|+.|+|||||++.+.+
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~ 26 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 368999999999999999976
No 327
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.89 E-value=0.044 Score=49.25 Aligned_cols=25 Identities=28% Similarity=0.458 Sum_probs=22.2
Q ss_pred eCCcEEEEeCCCCCChhHHHHhhcC
Q psy7411 373 YQNQITVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 373 ~~Gei~gLLGpNGAGKTTLL~~L~G 397 (474)
..+.++++.|+.||||||+.+.|+.
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999875
No 328
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=92.88 E-value=0.037 Score=47.37 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=19.9
Q ss_pred EEEEeCCCCCChhHHHHhhcCCC
Q psy7411 377 ITVLLGHNGAGKSTTMSMLTGLI 399 (474)
Q Consensus 377 i~gLLGpNGAGKTTLL~~L~GL~ 399 (474)
.++++|+.|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36899999999999999998743
No 329
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=92.86 E-value=0.05 Score=47.94 Aligned_cols=23 Identities=39% Similarity=0.398 Sum_probs=20.5
Q ss_pred CcEEEEeCCCCCChhHHHHhhcC
Q psy7411 375 NQITVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 375 Gei~gLLGpNGAGKTTLL~~L~G 397 (474)
=++++|.|+.||||||+.+.|+.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHH
Confidence 37899999999999999999975
No 330
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.83 E-value=0.049 Score=49.85 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=21.8
Q ss_pred cEEEEeCCCCCChhHHHHhhcCCCC
Q psy7411 376 QITVLLGHNGAGKSTTMSMLTGLII 400 (474)
Q Consensus 376 ei~gLLGpNGAGKTTLL~~L~GL~~ 400 (474)
.++++.|++||||||++..|...++
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 4789999999999999999887654
No 331
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=92.81 E-value=0.058 Score=51.92 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=20.8
Q ss_pred EEEEeCCCCCChhHHHHhhcCCC
Q psy7411 377 ITVLLGHNGAGKSTTMSMLTGLI 399 (474)
Q Consensus 377 i~gLLGpNGAGKTTLL~~L~GL~ 399 (474)
.++++|+.|+|||||++.|+|-.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47899999999999999999963
No 332
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=92.81 E-value=0.045 Score=52.19 Aligned_cols=23 Identities=39% Similarity=0.538 Sum_probs=20.4
Q ss_pred EEEEeCCCCCChhHHHHhhcCCC
Q psy7411 377 ITVLLGHNGAGKSTTMSMLTGLI 399 (474)
Q Consensus 377 i~gLLGpNGAGKTTLL~~L~GL~ 399 (474)
.++|+|++|+|||||++.|+|-.
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 36899999999999999999844
No 333
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=92.79 E-value=0.039 Score=49.14 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=20.0
Q ss_pred EEEEeCCCCCChhHHHHhhcCC
Q psy7411 377 ITVLLGHNGAGKSTTMSMLTGL 398 (474)
Q Consensus 377 i~gLLGpNGAGKTTLL~~L~GL 398 (474)
.++++|+.|+|||||++.+++-
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999884
No 334
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=92.76 E-value=0.043 Score=48.52 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=20.4
Q ss_pred EEEEeCCCCCChhHHHHhhcCCC
Q psy7411 377 ITVLLGHNGAGKSTTMSMLTGLI 399 (474)
Q Consensus 377 i~gLLGpNGAGKTTLL~~L~GL~ 399 (474)
.++++|+.|+|||||++.+.+-.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 47899999999999999998853
No 335
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=92.68 E-value=0.048 Score=50.77 Aligned_cols=25 Identities=32% Similarity=0.408 Sum_probs=20.9
Q ss_pred eCCcEEEEeCCCCCChhHHHHhhcC
Q psy7411 373 YQNQITVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 373 ~~Gei~gLLGpNGAGKTTLL~~L~G 397 (474)
.++.++++.|+.||||||+.+.|+.
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999974
No 336
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=92.65 E-value=0.027 Score=55.52 Aligned_cols=38 Identities=16% Similarity=0.295 Sum_probs=29.3
Q ss_pred eCCcEEEEeCCCCCChhHHHHhhcCCCCC----CeeEEEECC
Q psy7411 373 YQNQITVLLGHNGAGKSTTMSMLTGLIIP----TSGTAYIDG 410 (474)
Q Consensus 373 ~~Gei~gLLGpNGAGKTTLL~~L~GL~~P----tsG~i~i~G 410 (474)
.+++.+.|.||+|+||||+++.+++..++ ....+.++.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~ 84 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINT 84 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEC
Confidence 35678899999999999999999987654 334556654
No 337
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=92.65 E-value=0.041 Score=47.97 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=19.2
Q ss_pred EEEEeCCCCCChhHHHHhhcCC
Q psy7411 377 ITVLLGHNGAGKSTTMSMLTGL 398 (474)
Q Consensus 377 i~gLLGpNGAGKTTLL~~L~GL 398 (474)
.++++|+.|+|||||++.+.+-
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999988763
No 338
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=92.64 E-value=0.041 Score=47.27 Aligned_cols=20 Identities=35% Similarity=0.519 Sum_probs=18.4
Q ss_pred EEEeCCCCCChhHHHHhhcC
Q psy7411 378 TVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 378 ~gLLGpNGAGKTTLL~~L~G 397 (474)
++++|+.|+|||||++.+.+
T Consensus 6 i~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 6 LVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 68999999999999999875
No 339
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=92.63 E-value=0.041 Score=47.51 Aligned_cols=21 Identities=29% Similarity=0.363 Sum_probs=18.8
Q ss_pred EEEEeCCCCCChhHHHHhhcC
Q psy7411 377 ITVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 377 i~gLLGpNGAGKTTLL~~L~G 397 (474)
.++++|+.|+|||||++.+++
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCE 28 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 368999999999999999885
No 340
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=92.63 E-value=0.017 Score=61.11 Aligned_cols=36 Identities=19% Similarity=0.338 Sum_probs=29.5
Q ss_pred ceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCC
Q psy7411 362 KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLI 399 (474)
Q Consensus 362 ~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~ 399 (474)
...++++++++++| +.|.||+|+||||+++++++..
T Consensus 38 ~~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 38 PSKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp THHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHH
T ss_pred hHHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHc
Confidence 34566777777777 7799999999999999999844
No 341
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.63 E-value=0.041 Score=47.29 Aligned_cols=20 Identities=35% Similarity=0.509 Sum_probs=18.3
Q ss_pred EEEeCCCCCChhHHHHhhcC
Q psy7411 378 TVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 378 ~gLLGpNGAGKTTLL~~L~G 397 (474)
++++|+.|+|||||++.+.+
T Consensus 6 i~v~G~~~~GKssli~~l~~ 25 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 68999999999999998876
No 342
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.58 E-value=0.06 Score=48.95 Aligned_cols=24 Identities=38% Similarity=0.484 Sum_probs=21.0
Q ss_pred CCcEEEEeCCCCCChhHHHHhhcC
Q psy7411 374 QNQITVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 374 ~Gei~gLLGpNGAGKTTLL~~L~G 397 (474)
.+-+++|.|+.||||||+.+.|+.
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 446789999999999999999875
No 343
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=92.57 E-value=0.043 Score=48.42 Aligned_cols=21 Identities=38% Similarity=0.556 Sum_probs=19.3
Q ss_pred EEEeCCCCCChhHHHHhhcCC
Q psy7411 378 TVLLGHNGAGKSTTMSMLTGL 398 (474)
Q Consensus 378 ~gLLGpNGAGKTTLL~~L~GL 398 (474)
++++|+.|+|||||++.+++-
T Consensus 4 i~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 689999999999999999884
No 344
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.54 E-value=0.054 Score=49.68 Aligned_cols=21 Identities=38% Similarity=0.512 Sum_probs=18.6
Q ss_pred EEEEeCCCCCChhHHHHhhcC
Q psy7411 377 ITVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 377 i~gLLGpNGAGKTTLL~~L~G 397 (474)
.++|.|+.||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999954
No 345
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=92.53 E-value=0.052 Score=55.51 Aligned_cols=31 Identities=29% Similarity=0.328 Sum_probs=25.3
Q ss_pred EEEeCCCCCChhHHHHhhcCC-----------CCCCeeEEEE
Q psy7411 378 TVLLGHNGAGKSTTMSMLTGL-----------IIPTSGTAYI 408 (474)
Q Consensus 378 ~gLLGpNGAGKTTLL~~L~GL-----------~~PtsG~i~i 408 (474)
++++|++|+|||||++.|++. ..|+.|.+.+
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v 45 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPL 45 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEec
Confidence 689999999999999999984 3566676644
No 346
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=92.53 E-value=0.055 Score=48.21 Aligned_cols=21 Identities=29% Similarity=0.460 Sum_probs=19.1
Q ss_pred EEEEeCCCCCChhHHHHhhcC
Q psy7411 377 ITVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 377 i~gLLGpNGAGKTTLL~~L~G 397 (474)
++++.|+.||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999975
No 347
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=92.51 E-value=0.044 Score=47.78 Aligned_cols=20 Identities=40% Similarity=0.664 Sum_probs=18.5
Q ss_pred EEEeCCCCCChhHHHHhhcC
Q psy7411 378 TVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 378 ~gLLGpNGAGKTTLL~~L~G 397 (474)
++++|+.|+|||||++.+.+
T Consensus 10 i~v~G~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 10 VILLGDGGVGKSSLMNRYVT 29 (177)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 68999999999999999875
No 348
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=92.48 E-value=0.063 Score=49.15 Aligned_cols=26 Identities=15% Similarity=0.133 Sum_probs=22.4
Q ss_pred CCcEEEEeCCCCCChhHHHHhhcCCC
Q psy7411 374 QNQITVLLGHNGAGKSTTMSMLTGLI 399 (474)
Q Consensus 374 ~Gei~gLLGpNGAGKTTLL~~L~GL~ 399 (474)
++..+.|.||+|+||||+++.++...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 56788999999999999999887643
No 349
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=92.48 E-value=0.039 Score=48.06 Aligned_cols=22 Identities=27% Similarity=0.336 Sum_probs=19.4
Q ss_pred EEEEeCCCCCChhHHHHhhcCC
Q psy7411 377 ITVLLGHNGAGKSTTMSMLTGL 398 (474)
Q Consensus 377 i~gLLGpNGAGKTTLL~~L~GL 398 (474)
.++++|+.|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999998764
No 350
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=92.42 E-value=0.039 Score=47.51 Aligned_cols=21 Identities=29% Similarity=0.479 Sum_probs=18.9
Q ss_pred EEEeCCCCCChhHHHHhhcCC
Q psy7411 378 TVLLGHNGAGKSTTMSMLTGL 398 (474)
Q Consensus 378 ~gLLGpNGAGKTTLL~~L~GL 398 (474)
++++|+.|+|||||++.+.+-
T Consensus 6 i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHHhC
Confidence 689999999999999998863
No 351
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=92.42 E-value=0.045 Score=48.32 Aligned_cols=22 Identities=45% Similarity=0.490 Sum_probs=19.7
Q ss_pred EEEEeCCCCCChhHHHHhhcCC
Q psy7411 377 ITVLLGHNGAGKSTTMSMLTGL 398 (474)
Q Consensus 377 i~gLLGpNGAGKTTLL~~L~GL 398 (474)
.++++|+.|+|||||++.|++-
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999999874
No 352
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=92.40 E-value=0.045 Score=46.99 Aligned_cols=20 Identities=35% Similarity=0.493 Sum_probs=18.5
Q ss_pred EEEeCCCCCChhHHHHhhcC
Q psy7411 378 TVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 378 ~gLLGpNGAGKTTLL~~L~G 397 (474)
++++|+.|+|||||++.+++
T Consensus 9 i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 9 LVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 68999999999999999885
No 353
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.35 E-value=0.063 Score=51.48 Aligned_cols=25 Identities=32% Similarity=0.411 Sum_probs=21.8
Q ss_pred CCcEEEEeCCCCCChhHHHHhhcCC
Q psy7411 374 QNQITVLLGHNGAGKSTTMSMLTGL 398 (474)
Q Consensus 374 ~Gei~gLLGpNGAGKTTLL~~L~GL 398 (474)
++.++.+.|++||||||+.+.|+..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4668999999999999999998753
No 354
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.29 E-value=0.061 Score=48.85 Aligned_cols=24 Identities=38% Similarity=0.499 Sum_probs=20.4
Q ss_pred CCcEEEEeCCCCCChhHHHHhhcC
Q psy7411 374 QNQITVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 374 ~Gei~gLLGpNGAGKTTLL~~L~G 397 (474)
+..++++.|+.||||||+.+.|+.
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999998873
No 355
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=92.27 E-value=0.05 Score=48.07 Aligned_cols=23 Identities=22% Similarity=0.310 Sum_probs=20.3
Q ss_pred EEEeCCCCCChhHHHHhhcCCCC
Q psy7411 378 TVLLGHNGAGKSTTMSMLTGLII 400 (474)
Q Consensus 378 ~gLLGpNGAGKTTLL~~L~GL~~ 400 (474)
++++|+.|+|||||++.+.|-..
T Consensus 17 i~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 17 IVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEECCCCCCHHHHHHHHHhhcc
Confidence 68999999999999999998543
No 356
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.26 E-value=0.058 Score=47.93 Aligned_cols=23 Identities=26% Similarity=0.484 Sum_probs=20.3
Q ss_pred CcEEEEeCCCCCChhHHHHhhcC
Q psy7411 375 NQITVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 375 Gei~gLLGpNGAGKTTLL~~L~G 397 (474)
..+++|.|+.||||||+.+.|+.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999874
No 357
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=92.26 E-value=0.049 Score=47.89 Aligned_cols=20 Identities=35% Similarity=0.512 Sum_probs=18.6
Q ss_pred EEEeCCCCCChhHHHHhhcC
Q psy7411 378 TVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 378 ~gLLGpNGAGKTTLL~~L~G 397 (474)
++++|+.|+|||||++.+.+
T Consensus 7 i~v~G~~~~GKSsli~~l~~ 26 (189)
T 4dsu_A 7 LVVVGADGVGKSALTIQLIQ 26 (189)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 68999999999999999976
No 358
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=92.23 E-value=0.057 Score=47.07 Aligned_cols=21 Identities=24% Similarity=0.444 Sum_probs=19.1
Q ss_pred EEEeCCCCCChhHHHHhhcCC
Q psy7411 378 TVLLGHNGAGKSTTMSMLTGL 398 (474)
Q Consensus 378 ~gLLGpNGAGKTTLL~~L~GL 398 (474)
++++|+.|+|||||++.+++-
T Consensus 9 i~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 9 IVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHGG
T ss_pred EEEECcCCCCHHHHHHHHHhC
Confidence 689999999999999999873
No 359
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=92.18 E-value=0.063 Score=53.04 Aligned_cols=22 Identities=32% Similarity=0.581 Sum_probs=20.3
Q ss_pred EEEEeCCCCCChhHHHHhhcCC
Q psy7411 377 ITVLLGHNGAGKSTTMSMLTGL 398 (474)
Q Consensus 377 i~gLLGpNGAGKTTLL~~L~GL 398 (474)
.++++|++|+|||||++.|+|-
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999984
No 360
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.18 E-value=0.056 Score=47.52 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=19.6
Q ss_pred cEEEEeCCCCCChhHHHHhhcC
Q psy7411 376 QITVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 376 ei~gLLGpNGAGKTTLL~~L~G 397 (474)
.++++.|+.||||||+.+.|+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999875
No 361
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=92.18 E-value=0.05 Score=47.87 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=19.0
Q ss_pred EEEEeCCCCCChhHHHHhhcC
Q psy7411 377 ITVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 377 i~gLLGpNGAGKTTLL~~L~G 397 (474)
.++++|+.|+|||||++.+++
T Consensus 13 ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 368999999999999999986
No 362
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=92.17 E-value=0.064 Score=49.26 Aligned_cols=21 Identities=38% Similarity=0.455 Sum_probs=18.6
Q ss_pred EEEEeCCCCCChhHHHHhhcC
Q psy7411 377 ITVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 377 i~gLLGpNGAGKTTLL~~L~G 397 (474)
.++|.|+.||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999964
No 363
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.13 E-value=0.069 Score=46.76 Aligned_cols=21 Identities=38% Similarity=0.423 Sum_probs=19.1
Q ss_pred EEEEeCCCCCChhHHHHhhcC
Q psy7411 377 ITVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 377 i~gLLGpNGAGKTTLL~~L~G 397 (474)
++++.|+.||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999976
No 364
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=92.10 E-value=0.06 Score=51.02 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=19.9
Q ss_pred EEEEeCCCCCChhHHHHhhcCC
Q psy7411 377 ITVLLGHNGAGKSTTMSMLTGL 398 (474)
Q Consensus 377 i~gLLGpNGAGKTTLL~~L~GL 398 (474)
.++++|+.|+|||||++.|+|-
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999874
No 365
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=92.09 E-value=0.07 Score=47.14 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=20.2
Q ss_pred cEEEEeCCCCCChhHHHHhhcCC
Q psy7411 376 QITVLLGHNGAGKSTTMSMLTGL 398 (474)
Q Consensus 376 ei~gLLGpNGAGKTTLL~~L~GL 398 (474)
=.++++|+.|+|||||++.+++-
T Consensus 19 ~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 19 LRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35789999999999999999873
No 366
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=92.08 E-value=0.052 Score=48.41 Aligned_cols=20 Identities=40% Similarity=0.702 Sum_probs=18.6
Q ss_pred EEEeCCCCCChhHHHHhhcC
Q psy7411 378 TVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 378 ~gLLGpNGAGKTTLL~~L~G 397 (474)
++++|+.|+|||||++.+++
T Consensus 28 i~v~G~~~~GKSsLi~~l~~ 47 (193)
T 2oil_A 28 VVLIGESGVGKTNLLSRFTR 47 (193)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHhc
Confidence 68999999999999999887
No 367
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=92.05 E-value=0.12 Score=51.86 Aligned_cols=45 Identities=20% Similarity=0.237 Sum_probs=33.2
Q ss_pred eeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcC----CCCCCeeEEEE
Q psy7411 363 KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG----LIIPTSGTAYI 408 (474)
Q Consensus 363 ~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~G----L~~PtsG~i~i 408 (474)
..+++..+++ .|.-+.+.|++|+||||+...|.+ +...+...+..
T Consensus 133 ~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~g~~lv~dD~~~i~~ 181 (314)
T 1ko7_A 133 TSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKRGHRLVADDNVEIRE 181 (314)
T ss_dssp EEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHTTCEEEESSEEEEEE
T ss_pred eeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhcCCceecCCeEEEEE
Confidence 4666766777 788899999999999999988876 44444444443
No 368
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=92.03 E-value=0.053 Score=46.81 Aligned_cols=21 Identities=38% Similarity=0.550 Sum_probs=19.0
Q ss_pred EEEEeCCCCCChhHHHHhhcC
Q psy7411 377 ITVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 377 i~gLLGpNGAGKTTLL~~L~G 397 (474)
.++++|+.|+|||||++.+.+
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999965
No 369
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=92.02 E-value=0.051 Score=49.31 Aligned_cols=27 Identities=19% Similarity=0.251 Sum_probs=22.8
Q ss_pred cEEEEeCCCCCChhHHHHhhcCCCCCC
Q psy7411 376 QITVLLGHNGAGKSTTMSMLTGLIIPT 402 (474)
Q Consensus 376 ei~gLLGpNGAGKTTLL~~L~GL~~Pt 402 (474)
..+.|.||+|+||||++++++......
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~ 81 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKR 81 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 567899999999999999998865443
No 370
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=91.99 E-value=0.055 Score=50.11 Aligned_cols=24 Identities=17% Similarity=0.303 Sum_probs=20.8
Q ss_pred CCcEEEEeCCCCCChhHHHHhhcC
Q psy7411 374 QNQITVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 374 ~Gei~gLLGpNGAGKTTLL~~L~G 397 (474)
++..+.+.|+.||||||+.+.|+-
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 445788999999999999999874
No 371
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=91.97 E-value=0.062 Score=51.82 Aligned_cols=21 Identities=33% Similarity=0.453 Sum_probs=19.2
Q ss_pred EEEeCCCCCChhHHHHhhcCC
Q psy7411 378 TVLLGHNGAGKSTTMSMLTGL 398 (474)
Q Consensus 378 ~gLLGpNGAGKTTLL~~L~GL 398 (474)
++++|++|+|||||++.|.|-
T Consensus 11 I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 11 LMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEECTTSSHHHHHHHHSSS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 689999999999999998874
No 372
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=91.96 E-value=0.081 Score=46.94 Aligned_cols=21 Identities=19% Similarity=0.415 Sum_probs=18.9
Q ss_pred EEEeCCCCCChhHHHHhhcCC
Q psy7411 378 TVLLGHNGAGKSTTMSMLTGL 398 (474)
Q Consensus 378 ~gLLGpNGAGKTTLL~~L~GL 398 (474)
++++|+.|+|||||++.+++-
T Consensus 10 i~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 10 IVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 689999999999999998863
No 373
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=91.94 E-value=0.056 Score=46.46 Aligned_cols=20 Identities=30% Similarity=0.468 Sum_probs=18.4
Q ss_pred EEEeCCCCCChhHHHHhhcC
Q psy7411 378 TVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 378 ~gLLGpNGAGKTTLL~~L~G 397 (474)
++++|+.|+|||||++.+++
T Consensus 3 i~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 68999999999999999875
No 374
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=91.88 E-value=0.057 Score=47.27 Aligned_cols=20 Identities=25% Similarity=0.438 Sum_probs=18.5
Q ss_pred EEEeCCCCCChhHHHHhhcC
Q psy7411 378 TVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 378 ~gLLGpNGAGKTTLL~~L~G 397 (474)
++++|+.|+|||||++.+.+
T Consensus 21 i~v~G~~~~GKSsli~~l~~ 40 (187)
T 2a9k_A 21 VIMVGSGGVGKSALTLQFMY 40 (187)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhh
Confidence 68999999999999999976
No 375
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=91.88 E-value=0.056 Score=47.95 Aligned_cols=20 Identities=35% Similarity=0.483 Sum_probs=18.5
Q ss_pred EEEeCCCCCChhHHHHhhcC
Q psy7411 378 TVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 378 ~gLLGpNGAGKTTLL~~L~G 397 (474)
++++|+.|+|||||++.+++
T Consensus 24 i~vvG~~~~GKSsli~~l~~ 43 (190)
T 3con_A 24 LVVVGAGGVGKSALTIQLIQ 43 (190)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHc
Confidence 67999999999999999876
No 376
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=91.87 E-value=0.061 Score=48.05 Aligned_cols=22 Identities=41% Similarity=0.471 Sum_probs=19.5
Q ss_pred cEEEEeCCCCCChhHHHHhhcC
Q psy7411 376 QITVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 376 ei~gLLGpNGAGKTTLL~~L~G 397 (474)
.+++|.|+.||||||+.+.|+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999999865
No 377
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=91.86 E-value=0.057 Score=46.88 Aligned_cols=20 Identities=30% Similarity=0.564 Sum_probs=18.6
Q ss_pred EEEeCCCCCChhHHHHhhcC
Q psy7411 378 TVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 378 ~gLLGpNGAGKTTLL~~L~G 397 (474)
++++|+.|+|||||++.+.+
T Consensus 18 i~v~G~~~~GKSsli~~l~~ 37 (179)
T 1z0f_A 18 YIIIGDMGVGKSCLLHQFTE 37 (179)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 68999999999999999886
No 378
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.85 E-value=0.057 Score=47.14 Aligned_cols=21 Identities=24% Similarity=0.504 Sum_probs=18.9
Q ss_pred EEEEeCCCCCChhHHHHhhcC
Q psy7411 377 ITVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 377 i~gLLGpNGAGKTTLL~~L~G 397 (474)
.++++|+.|+|||||++.+.+
T Consensus 12 ~i~v~G~~~~GKssli~~l~~ 32 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKD 32 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 368999999999999999876
No 379
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=91.84 E-value=0.068 Score=47.62 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=20.0
Q ss_pred EEEeCCCCCChhHHHHhhcCCC
Q psy7411 378 TVLLGHNGAGKSTTMSMLTGLI 399 (474)
Q Consensus 378 ~gLLGpNGAGKTTLL~~L~GL~ 399 (474)
++++|+.|+|||||++.+++-.
T Consensus 24 i~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 24 VLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 6899999999999999998854
No 380
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=91.81 E-value=0.1 Score=45.71 Aligned_cols=21 Identities=24% Similarity=0.309 Sum_probs=18.6
Q ss_pred EEEEeCCCCCChhHHHHhhcC
Q psy7411 377 ITVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 377 i~gLLGpNGAGKTTLL~~L~G 397 (474)
.++++|+.|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 468999999999999998873
No 381
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=91.70 E-value=0.053 Score=47.07 Aligned_cols=20 Identities=25% Similarity=0.459 Sum_probs=18.4
Q ss_pred EEEeCCCCCChhHHHHhhcC
Q psy7411 378 TVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 378 ~gLLGpNGAGKTTLL~~L~G 397 (474)
++++|+.|+|||||++.+++
T Consensus 17 i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 17 LVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 68999999999999999875
No 382
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=91.69 E-value=0.083 Score=47.39 Aligned_cols=21 Identities=29% Similarity=0.588 Sum_probs=18.8
Q ss_pred EEEeCCCCCChhHHHHhhcCC
Q psy7411 378 TVLLGHNGAGKSTTMSMLTGL 398 (474)
Q Consensus 378 ~gLLGpNGAGKTTLL~~L~GL 398 (474)
++++|+.|+|||||++.+++-
T Consensus 29 i~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 29 VIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEECSTTSSHHHHHHHHCC-
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 679999999999999999974
No 383
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=91.68 E-value=0.068 Score=52.58 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=18.8
Q ss_pred CCcEEEEeCCCCCChhHHHHhhcCC
Q psy7411 374 QNQITVLLGHNGAGKSTTMSMLTGL 398 (474)
Q Consensus 374 ~Gei~gLLGpNGAGKTTLL~~L~GL 398 (474)
++-+++|.|++||||||+.+.|...
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999998864
No 384
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=91.63 E-value=0.082 Score=50.86 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=20.6
Q ss_pred EEEEeCCCCCChhHHHHhhcCCC
Q psy7411 377 ITVLLGHNGAGKSTTMSMLTGLI 399 (474)
Q Consensus 377 i~gLLGpNGAGKTTLL~~L~GL~ 399 (474)
.++++|+.|+|||||++.|+|-.
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47899999999999999999944
No 385
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=91.56 E-value=0.088 Score=46.81 Aligned_cols=21 Identities=24% Similarity=0.431 Sum_probs=19.2
Q ss_pred EEEEeCCCCCChhHHHHhhcC
Q psy7411 377 ITVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 377 i~gLLGpNGAGKTTLL~~L~G 397 (474)
.++++|+.|+|||||++.+++
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 367999999999999999988
No 386
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=91.55 E-value=0.065 Score=46.81 Aligned_cols=21 Identities=43% Similarity=0.490 Sum_probs=18.9
Q ss_pred EEEeCCCCCChhHHHHhhcCC
Q psy7411 378 TVLLGHNGAGKSTTMSMLTGL 398 (474)
Q Consensus 378 ~gLLGpNGAGKTTLL~~L~GL 398 (474)
++++|+.|+|||||++.+++-
T Consensus 15 i~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 15 LVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEECCTTSCHHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHHcC
Confidence 689999999999999998763
No 387
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=91.54 E-value=0.065 Score=48.12 Aligned_cols=22 Identities=27% Similarity=0.552 Sum_probs=19.4
Q ss_pred EEEEeCCCCCChhHHHHhhcCC
Q psy7411 377 ITVLLGHNGAGKSTTMSMLTGL 398 (474)
Q Consensus 377 i~gLLGpNGAGKTTLL~~L~GL 398 (474)
.++++|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 3789999999999999998763
No 388
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=91.53 E-value=0.027 Score=55.93 Aligned_cols=54 Identities=6% Similarity=-0.026 Sum_probs=43.0
Q ss_pred ccccccccCCCceeEEechhhhh-----hHHHH--HHhhCccCCccc-ccchhcccccccee
Q psy7411 42 DDIAGLIIPTSGTAYIDGHDIWY-----EMGKV--RESLGLCPQYDL-LFEELTVEDHLQFF 95 (474)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~f~ 95 (474)
--+++++.|++|++.++|.|+.. +.+.. |+.++|+||+.. +++.+||.||+.+.
T Consensus 118 ~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~l~~~ 179 (302)
T 3b9q_A 118 GKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRG 179 (302)
T ss_dssp HHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHHHHHHH
Confidence 35788999999999999999854 34444 457999999999 99999999998763
No 389
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=91.51 E-value=0.082 Score=47.48 Aligned_cols=21 Identities=14% Similarity=0.344 Sum_probs=19.2
Q ss_pred EEEeCCCCCChhHHHHhhcCC
Q psy7411 378 TVLLGHNGAGKSTTMSMLTGL 398 (474)
Q Consensus 378 ~gLLGpNGAGKTTLL~~L~GL 398 (474)
++++|+.|+|||||++.+++-
T Consensus 11 i~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 11 ILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEECSTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 689999999999999999873
No 390
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=91.43 E-value=0.074 Score=51.24 Aligned_cols=26 Identities=19% Similarity=0.238 Sum_probs=22.1
Q ss_pred CCcEEEEeCCCCCChhHHHHhhcCCC
Q psy7411 374 QNQITVLLGHNGAGKSTTMSMLTGLI 399 (474)
Q Consensus 374 ~Gei~gLLGpNGAGKTTLL~~L~GL~ 399 (474)
++..+.|.||+|+||||+++++++..
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 35667899999999999999998744
No 391
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=91.43 E-value=0.078 Score=51.36 Aligned_cols=23 Identities=35% Similarity=0.484 Sum_probs=20.7
Q ss_pred EEEEeCCCCCChhHHHHhhcCCC
Q psy7411 377 ITVLLGHNGAGKSTTMSMLTGLI 399 (474)
Q Consensus 377 i~gLLGpNGAGKTTLL~~L~GL~ 399 (474)
.++++|+.|+|||||++.|+|-.
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999954
No 392
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.42 E-value=0.072 Score=48.54 Aligned_cols=23 Identities=22% Similarity=0.410 Sum_probs=20.2
Q ss_pred EEEEeCCCCCChhHHHHhhcCCC
Q psy7411 377 ITVLLGHNGAGKSTTMSMLTGLI 399 (474)
Q Consensus 377 i~gLLGpNGAGKTTLL~~L~GL~ 399 (474)
.++++|+.|+|||||++.+++-.
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 46899999999999999998743
No 393
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=91.40 E-value=0.067 Score=47.86 Aligned_cols=20 Identities=25% Similarity=0.438 Sum_probs=18.4
Q ss_pred EEEeCCCCCChhHHHHhhcC
Q psy7411 378 TVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 378 ~gLLGpNGAGKTTLL~~L~G 397 (474)
++++|+.|+|||||++.+.+
T Consensus 17 i~v~G~~~~GKSsli~~l~~ 36 (206)
T 2bov_A 17 VIMVGSGGVGKSALTLQFMY 36 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 68999999999999999875
No 394
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=91.39 E-value=0.068 Score=46.79 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=18.5
Q ss_pred EEEEeCCCCCChhHHHHhhcC
Q psy7411 377 ITVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 377 i~gLLGpNGAGKTTLL~~L~G 397 (474)
.++++|+.|+|||||++.+++
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 368999999999999988874
No 395
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=91.27 E-value=0.071 Score=47.32 Aligned_cols=20 Identities=30% Similarity=0.564 Sum_probs=18.8
Q ss_pred EEEeCCCCCChhHHHHhhcC
Q psy7411 378 TVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 378 ~gLLGpNGAGKTTLL~~L~G 397 (474)
++++|+.|+|||||++.+.+
T Consensus 19 i~v~G~~~~GKSsli~~l~~ 38 (196)
T 3tkl_A 19 LLLIGDSGVGKSCLLLRFAD 38 (196)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHc
Confidence 68999999999999999987
No 396
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=91.26 E-value=0.063 Score=47.25 Aligned_cols=21 Identities=24% Similarity=0.464 Sum_probs=18.8
Q ss_pred EEEEeCCCCCChhHHHHhhcC
Q psy7411 377 ITVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 377 i~gLLGpNGAGKTTLL~~L~G 397 (474)
.++++|+.|+|||||++.+.+
T Consensus 12 ki~v~G~~~~GKSsli~~l~~ 32 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIE 32 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 368999999999999998875
No 397
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=91.26 E-value=0.068 Score=48.92 Aligned_cols=23 Identities=17% Similarity=0.242 Sum_probs=20.1
Q ss_pred cEEEEeCCCCCChhHHHHhhcCC
Q psy7411 376 QITVLLGHNGAGKSTTMSMLTGL 398 (474)
Q Consensus 376 ei~gLLGpNGAGKTTLL~~L~GL 398 (474)
-.++++|+.|+|||||++.|++-
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 36789999999999999988764
No 398
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=91.22 E-value=0.092 Score=51.79 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=20.7
Q ss_pred cEEEEeCCCCCChhHHHHhhcCC
Q psy7411 376 QITVLLGHNGAGKSTTMSMLTGL 398 (474)
Q Consensus 376 ei~gLLGpNGAGKTTLL~~L~GL 398 (474)
-.++++|+.|+|||||++.|.|-
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 36789999999999999999984
No 399
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.20 E-value=0.065 Score=47.69 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=19.1
Q ss_pred EEEEeCCCCCChhHHHHhhcC
Q psy7411 377 ITVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 377 i~gLLGpNGAGKTTLL~~L~G 397 (474)
.++++|+.|+|||||++.+++
T Consensus 10 ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHc
Confidence 478999999999999999976
No 400
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=91.18 E-value=0.073 Score=47.34 Aligned_cols=21 Identities=19% Similarity=0.352 Sum_probs=19.0
Q ss_pred EEEeCCCCCChhHHHHhhcCC
Q psy7411 378 TVLLGHNGAGKSTTMSMLTGL 398 (474)
Q Consensus 378 ~gLLGpNGAGKTTLL~~L~GL 398 (474)
++++|+.|+|||||++.+++-
T Consensus 25 i~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 25 LLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999998863
No 401
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.18 E-value=0.095 Score=48.90 Aligned_cols=21 Identities=29% Similarity=0.558 Sum_probs=18.8
Q ss_pred EEEEeCCCCCChhHHHHhhcC
Q psy7411 377 ITVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 377 i~gLLGpNGAGKTTLL~~L~G 397 (474)
.+++.|+.||||||+.+.|+-
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999874
No 402
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=91.16 E-value=0.074 Score=46.74 Aligned_cols=20 Identities=30% Similarity=0.443 Sum_probs=18.3
Q ss_pred EEEeCCCCCChhHHHHhhcC
Q psy7411 378 TVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 378 ~gLLGpNGAGKTTLL~~L~G 397 (474)
++++|+.|+|||||++.+++
T Consensus 21 i~v~G~~~~GKSsl~~~l~~ 40 (183)
T 3kkq_A 21 LVVVGDGGVGKSALTIQFFQ 40 (183)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 57999999999999998885
No 403
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=91.16 E-value=0.094 Score=49.82 Aligned_cols=22 Identities=18% Similarity=0.265 Sum_probs=19.9
Q ss_pred cEEEEeCCCCCChhHHHHhhcC
Q psy7411 376 QITVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 376 ei~gLLGpNGAGKTTLL~~L~G 397 (474)
-+++|.|+.||||||+.+.|+.
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999866
No 404
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=91.14 E-value=0.099 Score=49.63 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=20.9
Q ss_pred CCcEEEEeCCCCCChhHHHHhhcC
Q psy7411 374 QNQITVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 374 ~Gei~gLLGpNGAGKTTLL~~L~G 397 (474)
++-+++|.|+.||||||+.+.|+-
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 455789999999999999999974
No 405
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=91.11 E-value=0.11 Score=45.27 Aligned_cols=25 Identities=32% Similarity=0.492 Sum_probs=21.1
Q ss_pred CcEEEEeCCCCCChhHHHHhhcCCC
Q psy7411 375 NQITVLLGHNGAGKSTTMSMLTGLI 399 (474)
Q Consensus 375 Gei~gLLGpNGAGKTTLL~~L~GL~ 399 (474)
+..+.|.||.|+||||+++.++...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 4567899999999999999887643
No 406
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=91.11 E-value=0.05 Score=49.72 Aligned_cols=23 Identities=30% Similarity=0.419 Sum_probs=20.8
Q ss_pred EEEEeCCCCCChhHHHHhhcCCC
Q psy7411 377 ITVLLGHNGAGKSTTMSMLTGLI 399 (474)
Q Consensus 377 i~gLLGpNGAGKTTLL~~L~GL~ 399 (474)
.++++|+.|+|||||++.|+|-.
T Consensus 31 ~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 31 EIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCS
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999864
No 407
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=91.09 E-value=0.098 Score=48.37 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.6
Q ss_pred cEEEEeCCCCCChhHHHHhhcCC
Q psy7411 376 QITVLLGHNGAGKSTTMSMLTGL 398 (474)
Q Consensus 376 ei~gLLGpNGAGKTTLL~~L~GL 398 (474)
-+++|.|+.||||||+.+.|...
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999864
No 408
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=91.09 E-value=0.11 Score=48.12 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=20.0
Q ss_pred EEEEeCCCCCChhHHHHhhcCC
Q psy7411 377 ITVLLGHNGAGKSTTMSMLTGL 398 (474)
Q Consensus 377 i~gLLGpNGAGKTTLL~~L~GL 398 (474)
.++++|+.|+|||||++.+++-
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999884
No 409
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.97 E-value=0.089 Score=46.70 Aligned_cols=21 Identities=24% Similarity=0.452 Sum_probs=19.2
Q ss_pred EEEEeCCCCCChhHHHHhhcC
Q psy7411 377 ITVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 377 i~gLLGpNGAGKTTLL~~L~G 397 (474)
.++++|+.|+|||||++.+++
T Consensus 18 ~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 18 KVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999985
No 410
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=90.94 E-value=0.1 Score=49.83 Aligned_cols=28 Identities=25% Similarity=0.458 Sum_probs=20.7
Q ss_pred EeCCcEEEEeCCCCCChhHHHHhhcCCC
Q psy7411 372 MYQNQITVLLGHNGAGKSTTMSMLTGLI 399 (474)
Q Consensus 372 i~~Gei~gLLGpNGAGKTTLL~~L~GL~ 399 (474)
..+|.++.+.|+.||||||+.+.|..-+
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999999887543
No 411
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=90.90 E-value=0.091 Score=47.54 Aligned_cols=20 Identities=25% Similarity=0.499 Sum_probs=18.6
Q ss_pred EEEeCCCCCChhHHHHhhcC
Q psy7411 378 TVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 378 ~gLLGpNGAGKTTLL~~L~G 397 (474)
++++|+.|+|||||++.+.+
T Consensus 28 i~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 28 FLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp EEEEESTTSSHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHHh
Confidence 68999999999999999986
No 412
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=90.88 E-value=0.093 Score=50.99 Aligned_cols=23 Identities=26% Similarity=0.448 Sum_probs=21.0
Q ss_pred EEEEeCCCCCChhHHHHhhcCCC
Q psy7411 377 ITVLLGHNGAGKSTTMSMLTGLI 399 (474)
Q Consensus 377 i~gLLGpNGAGKTTLL~~L~GL~ 399 (474)
.++++|+.|+|||||++.|+|-.
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 47899999999999999999964
No 413
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=90.80 E-value=0.11 Score=54.92 Aligned_cols=38 Identities=29% Similarity=0.290 Sum_probs=31.8
Q ss_pred ceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCCC
Q psy7411 362 KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLII 400 (474)
Q Consensus 362 ~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~ 400 (474)
.+++|.+ ..+-+|+..+++|++|+|||||++.|+.-..
T Consensus 139 ir~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~ 176 (473)
T 1sky_E 139 IKVVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIA 176 (473)
T ss_dssp CHHHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred chHHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhh
Confidence 3466666 6788999999999999999999999887544
No 414
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=90.78 E-value=0.11 Score=47.26 Aligned_cols=22 Identities=32% Similarity=0.398 Sum_probs=19.6
Q ss_pred EEEeCCCCCChhHHHHhhcCCC
Q psy7411 378 TVLLGHNGAGKSTTMSMLTGLI 399 (474)
Q Consensus 378 ~gLLGpNGAGKTTLL~~L~GL~ 399 (474)
++++|+.|+|||||++.+++-.
T Consensus 28 i~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 28 LLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 6899999999999999998743
No 415
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=90.78 E-value=0.079 Score=48.24 Aligned_cols=21 Identities=29% Similarity=0.479 Sum_probs=19.1
Q ss_pred EEEeCCCCCChhHHHHhhcCC
Q psy7411 378 TVLLGHNGAGKSTTMSMLTGL 398 (474)
Q Consensus 378 ~gLLGpNGAGKTTLL~~L~GL 398 (474)
++++|+.|+|||||++.+++-
T Consensus 14 i~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 14 ICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEECCTTSSHHHHHCBCTTC
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 679999999999999999863
No 416
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=90.77 E-value=0.1 Score=45.51 Aligned_cols=21 Identities=24% Similarity=0.340 Sum_probs=19.0
Q ss_pred EEEEeCCCCCChhHHHHhhcC
Q psy7411 377 ITVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 377 i~gLLGpNGAGKTTLL~~L~G 397 (474)
.++++|+.|+|||||++.+.+
T Consensus 10 ki~v~G~~~~GKssl~~~~~~ 30 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTS 30 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999998875
No 417
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=90.75 E-value=0.081 Score=46.50 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=8.8
Q ss_pred EEEEeCCCCCChhHHHHhhcCC
Q psy7411 377 ITVLLGHNGAGKSTTMSMLTGL 398 (474)
Q Consensus 377 i~gLLGpNGAGKTTLL~~L~GL 398 (474)
.++++|+.|+|||||++.+++-
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3689999999999999998864
No 418
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=90.74 E-value=0.076 Score=47.54 Aligned_cols=20 Identities=35% Similarity=0.602 Sum_probs=18.5
Q ss_pred EEEeCCCCCChhHHHHhhcC
Q psy7411 378 TVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 378 ~gLLGpNGAGKTTLL~~L~G 397 (474)
++++|+.|+|||||++.+++
T Consensus 26 i~vvG~~~~GKSsli~~l~~ 45 (192)
T 2fg5_A 26 VCLLGDTGVGKSSIVCRFVQ 45 (192)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHhc
Confidence 68999999999999999876
No 419
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=90.72 E-value=0.086 Score=47.04 Aligned_cols=20 Identities=30% Similarity=0.592 Sum_probs=18.5
Q ss_pred EEEeCCCCCChhHHHHhhcC
Q psy7411 378 TVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 378 ~gLLGpNGAGKTTLL~~L~G 397 (474)
++++|+.|+|||||++.+++
T Consensus 24 i~v~G~~~~GKSsli~~l~~ 43 (191)
T 2a5j_A 24 YIIIGDTGVGKSCLLLQFTD 43 (191)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHhc
Confidence 67999999999999999886
No 420
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=90.72 E-value=0.086 Score=46.61 Aligned_cols=21 Identities=29% Similarity=0.558 Sum_probs=19.0
Q ss_pred EEEEeCCCCCChhHHHHhhcC
Q psy7411 377 ITVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 377 i~gLLGpNGAGKTTLL~~L~G 397 (474)
.++++|+.|+|||||++.+++
T Consensus 17 ~i~v~G~~~~GKssli~~l~~ 37 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTD 37 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 368999999999999999976
No 421
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=90.71 E-value=0.1 Score=49.93 Aligned_cols=22 Identities=41% Similarity=0.672 Sum_probs=19.9
Q ss_pred EEEeCCCCCChhHHHHhhcCCC
Q psy7411 378 TVLLGHNGAGKSTTMSMLTGLI 399 (474)
Q Consensus 378 ~gLLGpNGAGKTTLL~~L~GL~ 399 (474)
++++|+.|+|||||++.|+|-.
T Consensus 39 I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 39 VLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6899999999999999999844
No 422
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=90.69 E-value=0.11 Score=46.52 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=19.0
Q ss_pred EEEEeCCCCCChhHHHHhhcCC
Q psy7411 377 ITVLLGHNGAGKSTTMSMLTGL 398 (474)
Q Consensus 377 i~gLLGpNGAGKTTLL~~L~GL 398 (474)
.++++|+.|+|||||++.+.+-
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3689999999999999998863
No 423
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=90.67 E-value=0.089 Score=46.78 Aligned_cols=20 Identities=15% Similarity=0.381 Sum_probs=18.3
Q ss_pred EEEeCCCCCChhHHHHhhcC
Q psy7411 378 TVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 378 ~gLLGpNGAGKTTLL~~L~G 397 (474)
++++|+.|+|||||++.+.+
T Consensus 23 i~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 23 IIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 68999999999999999875
No 424
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=90.58 E-value=0.079 Score=47.81 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=19.5
Q ss_pred EEEEeCCCCCChhHHHHhhcCC
Q psy7411 377 ITVLLGHNGAGKSTTMSMLTGL 398 (474)
Q Consensus 377 i~gLLGpNGAGKTTLL~~L~GL 398 (474)
.++++|+.|+|||||++.+++-
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3679999999999999999873
No 425
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=90.58 E-value=0.12 Score=50.19 Aligned_cols=29 Identities=28% Similarity=0.430 Sum_probs=22.5
Q ss_pred cEEEEeCCCCCChhHHHHhhcCCCCCCee
Q psy7411 376 QITVLLGHNGAGKSTTMSMLTGLIIPTSG 404 (474)
Q Consensus 376 ei~gLLGpNGAGKTTLL~~L~GL~~PtsG 404 (474)
..++++|.+|+|||||++.|+|-..+..|
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~ 128 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVG 128 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccC
Confidence 47899999999999999999996654433
No 426
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=90.57 E-value=0.11 Score=48.10 Aligned_cols=24 Identities=25% Similarity=0.519 Sum_probs=20.8
Q ss_pred CCcEEEEeCCCCCChhHHHHhhcC
Q psy7411 374 QNQITVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 374 ~Gei~gLLGpNGAGKTTLL~~L~G 397 (474)
+|-.+.+.|+.||||||+.+.|+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999999965
No 427
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=90.52 E-value=0.091 Score=47.46 Aligned_cols=21 Identities=43% Similarity=0.751 Sum_probs=19.1
Q ss_pred EEEEeCCCCCChhHHHHhhcC
Q psy7411 377 ITVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 377 i~gLLGpNGAGKTTLL~~L~G 397 (474)
.++++|.+|+|||||++.++|
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 378999999999999999986
No 428
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=90.51 E-value=0.088 Score=46.55 Aligned_cols=20 Identities=25% Similarity=0.509 Sum_probs=18.7
Q ss_pred EEEeCCCCCChhHHHHhhcC
Q psy7411 378 TVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 378 ~gLLGpNGAGKTTLL~~L~G 397 (474)
++++|+.|+|||||++.+.+
T Consensus 24 i~v~G~~~~GKSsli~~l~~ 43 (181)
T 2h17_A 24 VIIVGLDNAGKTTILYQFSM 43 (181)
T ss_dssp EEEEEETTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 57999999999999999987
No 429
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=90.49 E-value=0.093 Score=46.87 Aligned_cols=21 Identities=19% Similarity=0.349 Sum_probs=19.0
Q ss_pred EEEeCCCCCChhHHHHhhcCC
Q psy7411 378 TVLLGHNGAGKSTTMSMLTGL 398 (474)
Q Consensus 378 ~gLLGpNGAGKTTLL~~L~GL 398 (474)
++++|+.|+|||||++.+++-
T Consensus 26 i~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 26 IVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 689999999999999998873
No 430
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=90.49 E-value=0.016 Score=63.03 Aligned_cols=54 Identities=15% Similarity=0.070 Sum_probs=36.9
Q ss_pred cccccccC-CCceeEEechhhh----hhHHHHHHhhCccCCcccccchhccccccceee
Q psy7411 43 DIAGLIIP-TSGTAYIDGHDIW----YEMGKVRESLGLCPQYDLLFEELTVEDHLQFFA 96 (474)
Q Consensus 43 ~~~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 96 (474)
-|+|++.| ++|+++++|.++. .+..+.|+.+||+||...+++.+||.+|+.+..
T Consensus 64 ~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~ 122 (608)
T 3szr_A 64 ALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQ 122 (608)
T ss_dssp HHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHH
T ss_pred HHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHH
Confidence 36788888 8999999999963 123578899999999999999999999987754
No 431
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.48 E-value=0.094 Score=46.99 Aligned_cols=21 Identities=24% Similarity=0.396 Sum_probs=18.9
Q ss_pred EEEEeCCCCCChhHHHHhhcC
Q psy7411 377 ITVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 377 i~gLLGpNGAGKTTLL~~L~G 397 (474)
.++++|+.|+|||||++.+++
T Consensus 30 ki~v~G~~~vGKSsli~~l~~ 50 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLT 50 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 368999999999999999876
No 432
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=90.42 E-value=0.095 Score=46.74 Aligned_cols=20 Identities=25% Similarity=0.443 Sum_probs=18.5
Q ss_pred EEEeCCCCCChhHHHHhhcC
Q psy7411 378 TVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 378 ~gLLGpNGAGKTTLL~~L~G 397 (474)
++++|+.|+|||||++.+++
T Consensus 25 i~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 25 LTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 68999999999999999985
No 433
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.39 E-value=0.084 Score=47.12 Aligned_cols=22 Identities=14% Similarity=0.309 Sum_probs=19.5
Q ss_pred EEEeCCCCCChhHHHHhhcCCC
Q psy7411 378 TVLLGHNGAGKSTTMSMLTGLI 399 (474)
Q Consensus 378 ~gLLGpNGAGKTTLL~~L~GL~ 399 (474)
++++|+.|+|||||++.+++-.
T Consensus 26 i~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 26 LLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCcCHHHHHHHHhcCC
Confidence 5799999999999999998743
No 434
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=90.38 E-value=0.084 Score=47.63 Aligned_cols=21 Identities=29% Similarity=0.531 Sum_probs=19.0
Q ss_pred EEEEeCCCCCChhHHHHhhcC
Q psy7411 377 ITVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 377 i~gLLGpNGAGKTTLL~~L~G 397 (474)
.++++|+.|+|||||++.+.+
T Consensus 10 ki~v~G~~~~GKSsli~~l~~ 30 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSD 30 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 368999999999999999976
No 435
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.36 E-value=0.096 Score=47.21 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=19.0
Q ss_pred EEEEeCCCCCChhHHHHhhcC
Q psy7411 377 ITVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 377 i~gLLGpNGAGKTTLL~~L~G 397 (474)
.++++|+.|+|||||++.+++
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~ 42 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVE 42 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999999885
No 436
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=90.34 E-value=0.098 Score=47.10 Aligned_cols=22 Identities=32% Similarity=0.323 Sum_probs=19.3
Q ss_pred EEEEeCCCCCChhHHHHhhcCC
Q psy7411 377 ITVLLGHNGAGKSTTMSMLTGL 398 (474)
Q Consensus 377 i~gLLGpNGAGKTTLL~~L~GL 398 (474)
.++++|+.|+|||||++.+++-
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4689999999999999998763
No 437
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=90.33 E-value=0.14 Score=48.21 Aligned_cols=27 Identities=33% Similarity=0.423 Sum_probs=23.0
Q ss_pred eCCcEEEEeCCCCCChhHHHHhhcCCC
Q psy7411 373 YQNQITVLLGHNGAGKSTTMSMLTGLI 399 (474)
Q Consensus 373 ~~Gei~gLLGpNGAGKTTLL~~L~GL~ 399 (474)
.+|.++.+-|+.||||||+++.|..-+
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999987644
No 438
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=90.31 E-value=0.14 Score=46.81 Aligned_cols=28 Identities=21% Similarity=0.381 Sum_probs=22.6
Q ss_pred EEEeCCCCCChhHHHHhhcCCC-----CCCeeE
Q psy7411 378 TVLLGHNGAGKSTTMSMLTGLI-----IPTSGT 405 (474)
Q Consensus 378 ~gLLGpNGAGKTTLL~~L~GL~-----~PtsG~ 405 (474)
++++|+.|+|||||++.+++-. .|+.|.
T Consensus 31 i~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~ 63 (205)
T 1gwn_A 31 IVVVGDSQCGKTALLHVFAKDCFPENYVPTVFE 63 (205)
T ss_dssp EEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEE
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCcCCccce
Confidence 6899999999999999998742 455553
No 439
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=90.28 E-value=0.11 Score=47.75 Aligned_cols=21 Identities=33% Similarity=0.434 Sum_probs=18.6
Q ss_pred EEEEeCCCCCChhHHHHhhcC
Q psy7411 377 ITVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 377 i~gLLGpNGAGKTTLL~~L~G 397 (474)
.+++.|+.||||||+.+.|+-
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 368999999999999999865
No 440
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=90.22 E-value=0.11 Score=47.48 Aligned_cols=20 Identities=30% Similarity=0.682 Sum_probs=18.8
Q ss_pred EEEeCCCCCChhHHHHhhcC
Q psy7411 378 TVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 378 ~gLLGpNGAGKTTLL~~L~G 397 (474)
++++|+.|+|||||++.+++
T Consensus 37 i~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 37 VVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEECTTSSHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHHc
Confidence 68999999999999999987
No 441
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=90.18 E-value=0.12 Score=46.46 Aligned_cols=21 Identities=29% Similarity=0.407 Sum_probs=19.2
Q ss_pred EEEEeCCCCCChhHHHHhhcC
Q psy7411 377 ITVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 377 i~gLLGpNGAGKTTLL~~L~G 397 (474)
.++++|+.|+|||||++.+++
T Consensus 31 ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 31 RILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp EEEEEESTTSSHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999999976
No 442
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=90.15 E-value=0.11 Score=50.48 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=20.5
Q ss_pred CcEEEEeCCCCCChhHHHHhhcC
Q psy7411 375 NQITVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 375 Gei~gLLGpNGAGKTTLL~~L~G 397 (474)
.-+++|.|+.||||||+.+.|..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999983
No 443
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=90.14 E-value=0.12 Score=46.46 Aligned_cols=21 Identities=24% Similarity=0.363 Sum_probs=19.3
Q ss_pred EEEeCCCCCChhHHHHhhcCC
Q psy7411 378 TVLLGHNGAGKSTTMSMLTGL 398 (474)
Q Consensus 378 ~gLLGpNGAGKTTLL~~L~GL 398 (474)
++++|..|+|||||++.+.+-
T Consensus 23 i~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 23 ILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 679999999999999999884
No 444
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=90.13 E-value=0.15 Score=47.75 Aligned_cols=24 Identities=42% Similarity=0.530 Sum_probs=20.8
Q ss_pred CCcEEEEeCCCCCChhHHHHhhcC
Q psy7411 374 QNQITVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 374 ~Gei~gLLGpNGAGKTTLL~~L~G 397 (474)
++..+.+.|+.||||||+.+.|+-
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999999975
No 445
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=90.06 E-value=0.15 Score=45.95 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=19.8
Q ss_pred cEEEEeCCCCCChhHHHHhhcCC
Q psy7411 376 QITVLLGHNGAGKSTTMSMLTGL 398 (474)
Q Consensus 376 ei~gLLGpNGAGKTTLL~~L~GL 398 (474)
..+.+.||.|+||||+++.++..
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36789999999999999988753
No 446
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=90.04 E-value=0.079 Score=46.34 Aligned_cols=21 Identities=24% Similarity=0.287 Sum_probs=18.9
Q ss_pred EEEEeCCCCCChhHHHHhhcC
Q psy7411 377 ITVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 377 i~gLLGpNGAGKTTLL~~L~G 397 (474)
.++++|+.|+|||||++.+++
T Consensus 9 ki~~vG~~~vGKTsli~~l~~ 29 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLT 29 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 368999999999999998876
No 447
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=90.00 E-value=0.14 Score=49.53 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=19.7
Q ss_pred cEEEEeCCCCCChhHHHHhhcC
Q psy7411 376 QITVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 376 ei~gLLGpNGAGKTTLL~~L~G 397 (474)
.++.+.|++||||||+.+.|+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999875
No 448
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=89.93 E-value=0.096 Score=47.91 Aligned_cols=20 Identities=35% Similarity=0.609 Sum_probs=18.2
Q ss_pred EEEeCCCCCChhHHHHhhcC
Q psy7411 378 TVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 378 ~gLLGpNGAGKTTLL~~L~G 397 (474)
++++|+.|+|||||++.+++
T Consensus 29 i~lvG~~~vGKSsLi~~l~~ 48 (201)
T 2ew1_A 29 IVLIGNAGVGKTCLVRRFTQ 48 (201)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHh
Confidence 68999999999999998865
No 449
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=89.82 E-value=0.076 Score=47.50 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=3.8
Q ss_pred EEEEeCCCCCChhHHHHhhcCC
Q psy7411 377 ITVLLGHNGAGKSTTMSMLTGL 398 (474)
Q Consensus 377 i~gLLGpNGAGKTTLL~~L~GL 398 (474)
.++++|+.|+|||||++.+++-
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3689999999999999988875
No 450
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=89.82 E-value=0.16 Score=46.07 Aligned_cols=21 Identities=19% Similarity=0.289 Sum_probs=19.0
Q ss_pred EEEEeCCCCCChhHHHHhhcC
Q psy7411 377 ITVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 377 i~gLLGpNGAGKTTLL~~L~G 397 (474)
.++++|+.|+|||||++.+++
T Consensus 9 ki~vvG~~~~GKTsli~~l~~ 29 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLT 29 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999999876
No 451
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=89.81 E-value=0.073 Score=52.89 Aligned_cols=53 Identities=9% Similarity=-0.006 Sum_probs=44.0
Q ss_pred ccccccccCCCceeEEechhhh-----hhHHHH--HHhhCccCCcccccchhccccccce
Q psy7411 42 DDIAGLIIPTSGTAYIDGHDIW-----YEMGKV--RESLGLCPQYDLLFEELTVEDHLQF 94 (474)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~f 94 (474)
--+++++.|++|++.++|.|+. ++.... |+.++|++|...+++.+||.+|+.+
T Consensus 120 ~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~ 179 (304)
T 1rj9_A 120 AKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQA 179 (304)
T ss_dssp HHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHH
Confidence 4578899999999999999985 344544 4569999999999999999999754
No 452
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=89.81 E-value=0.11 Score=45.97 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=19.1
Q ss_pred EEEEeCCCCCChhHHHHhhcC
Q psy7411 377 ITVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 377 i~gLLGpNGAGKTTLL~~L~G 397 (474)
.++++|+.|+|||||++.+.+
T Consensus 24 ~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 24 RVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999999975
No 453
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=89.75 E-value=0.12 Score=49.76 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=20.9
Q ss_pred EEEEeCCCCCChhHHHHhhcCCC
Q psy7411 377 ITVLLGHNGAGKSTTMSMLTGLI 399 (474)
Q Consensus 377 i~gLLGpNGAGKTTLL~~L~GL~ 399 (474)
.++++|..|+|||||++.|+|-.
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 47899999999999999999954
No 454
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=89.74 E-value=0.13 Score=49.22 Aligned_cols=23 Identities=30% Similarity=0.583 Sum_probs=20.2
Q ss_pred EEEEeCCCCCChhHHHHhhcCCC
Q psy7411 377 ITVLLGHNGAGKSTTMSMLTGLI 399 (474)
Q Consensus 377 i~gLLGpNGAGKTTLL~~L~GL~ 399 (474)
.++++|+.|+|||||++.|+|-.
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36799999999999999998844
No 455
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=89.66 E-value=0.16 Score=50.00 Aligned_cols=27 Identities=22% Similarity=0.284 Sum_probs=24.1
Q ss_pred EEeCCcEEEEeCCCCCChhHHHHhhcC
Q psy7411 371 DMYQNQITVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 371 ~i~~Gei~gLLGpNGAGKTTLL~~L~G 397 (474)
-+++|+++.+.|++|+||||+...++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999999987663
No 456
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=89.65 E-value=0.17 Score=52.25 Aligned_cols=26 Identities=31% Similarity=0.325 Sum_probs=22.9
Q ss_pred EeCCcEEEEeCCCCCChhHHHHhhcC
Q psy7411 372 MYQNQITVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 372 i~~Gei~gLLGpNGAGKTTLL~~L~G 397 (474)
-.+.+++.++|++||||||+.+.|+.
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 35678999999999999999999875
No 457
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.63 E-value=0.11 Score=47.24 Aligned_cols=22 Identities=18% Similarity=0.342 Sum_probs=19.6
Q ss_pred EEEEeCCCCCChhHHHHhhcCC
Q psy7411 377 ITVLLGHNGAGKSTTMSMLTGL 398 (474)
Q Consensus 377 i~gLLGpNGAGKTTLL~~L~GL 398 (474)
.++++|+.|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4789999999999999999873
No 458
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=89.59 E-value=0.12 Score=46.11 Aligned_cols=28 Identities=29% Similarity=0.342 Sum_probs=21.8
Q ss_pred EEEeCCCCCChhHHHHhhcCC-----CCCCeeE
Q psy7411 378 TVLLGHNGAGKSTTMSMLTGL-----IIPTSGT 405 (474)
Q Consensus 378 ~gLLGpNGAGKTTLL~~L~GL-----~~PtsG~ 405 (474)
++++|+.|+|||||++.+++- ..||.|.
T Consensus 24 i~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~ 56 (187)
T 3c5c_A 24 LAILGRRGAGKSALTVKFLTKRFISEYDPNLED 56 (187)
T ss_dssp EEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCE
T ss_pred EEEECCCCCcHHHHHHHHHhCCCCcccCCCccc
Confidence 689999999999999888652 3456553
No 459
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=89.43 E-value=0.15 Score=46.79 Aligned_cols=23 Identities=30% Similarity=0.248 Sum_probs=20.4
Q ss_pred CcEEEEeCCCCCChhHHHHhhcC
Q psy7411 375 NQITVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 375 Gei~gLLGpNGAGKTTLL~~L~G 397 (474)
+.+++|.|+.||||||+.+.|+.
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999998875
No 460
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=89.42 E-value=0.16 Score=48.42 Aligned_cols=27 Identities=19% Similarity=0.193 Sum_probs=22.7
Q ss_pred eCCcEEEEeCCCCCChhHHHHhhcCCC
Q psy7411 373 YQNQITVLLGHNGAGKSTTMSMLTGLI 399 (474)
Q Consensus 373 ~~Gei~gLLGpNGAGKTTLL~~L~GL~ 399 (474)
.++..+.|.||.|+||||++++++...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 345568899999999999999998754
No 461
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=89.40 E-value=0.13 Score=48.66 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=21.5
Q ss_pred eCCcEEEEeCCCCCChhHHHHhhcC
Q psy7411 373 YQNQITVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 373 ~~Gei~gLLGpNGAGKTTLL~~L~G 397 (474)
++..++.|+||.||||+|..+.|+-
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4557888999999999999988874
No 462
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=89.38 E-value=0.14 Score=44.75 Aligned_cols=25 Identities=32% Similarity=0.458 Sum_probs=20.9
Q ss_pred CcEEEEeCCCCCChhHHHHhhcCCC
Q psy7411 375 NQITVLLGHNGAGKSTTMSMLTGLI 399 (474)
Q Consensus 375 Gei~gLLGpNGAGKTTLL~~L~GL~ 399 (474)
+..+.|.||.|+||||+++.++...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 4456799999999999999888754
No 463
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=89.38 E-value=0.056 Score=55.17 Aligned_cols=54 Identities=6% Similarity=-0.026 Sum_probs=44.9
Q ss_pred ccccccccCCCceeEEechhhhh-----hHHHH--HHhhCccCCccc-ccchhcccccccee
Q psy7411 42 DDIAGLIIPTSGTAYIDGHDIWY-----EMGKV--RESLGLCPQYDL-LFEELTVEDHLQFF 95 (474)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~f~ 95 (474)
--|+++++|++|++.++|.|+.. +.+.. |+.++|+||+.. +++.+||.||+.+.
T Consensus 175 ~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~l~~~ 236 (359)
T 2og2_A 175 GKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRG 236 (359)
T ss_dssp HHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHHHHHH
T ss_pred HHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHHHHHH
Confidence 35788999999999999999854 34443 567999999999 99999999998764
No 464
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=89.32 E-value=0.095 Score=47.19 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=19.6
Q ss_pred EEEeCCCCCChhHHHHhhcCCC
Q psy7411 378 TVLLGHNGAGKSTTMSMLTGLI 399 (474)
Q Consensus 378 ~gLLGpNGAGKTTLL~~L~GL~ 399 (474)
++++|+.|+|||||++.+++-.
T Consensus 36 i~vvG~~~~GKSsli~~l~~~~ 57 (199)
T 3l0i_B 36 LLLIGDSGVGKSCLLLRFADDT 57 (199)
T ss_dssp EEEECCTTSCCTTTTTSSBCCC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 6799999999999999998843
No 465
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=89.31 E-value=0.22 Score=46.01 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=22.0
Q ss_pred EEeCCcEEEEeCCCCCChhHHHHhh
Q psy7411 371 DMYQNQITVLLGHNGAGKSTTMSML 395 (474)
Q Consensus 371 ~i~~Gei~gLLGpNGAGKTTLL~~L 395 (474)
-+++|+++.+.|+.|+||||+..-+
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~ 50 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQF 50 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHH
Confidence 3789999999999999999997543
No 466
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=89.30 E-value=0.14 Score=50.21 Aligned_cols=27 Identities=15% Similarity=0.177 Sum_probs=22.4
Q ss_pred CcEEEEeCCCCCChhHHHHhhcCCCCC
Q psy7411 375 NQITVLLGHNGAGKSTTMSMLTGLIIP 401 (474)
Q Consensus 375 Gei~gLLGpNGAGKTTLL~~L~GL~~P 401 (474)
+..+.|.||+|+||||+++.+++...+
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~ 63 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKK 63 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHH
Confidence 355779999999999999999986543
No 467
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=89.30 E-value=0.16 Score=48.62 Aligned_cols=26 Identities=31% Similarity=0.542 Sum_probs=23.1
Q ss_pred CCcEEEEeCCCCCChhHHHHhhcCCC
Q psy7411 374 QNQITVLLGHNGAGKSTTMSMLTGLI 399 (474)
Q Consensus 374 ~Gei~gLLGpNGAGKTTLL~~L~GL~ 399 (474)
+|.++.+.|+.||||||+++.|..-+
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999999987644
No 468
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=89.21 E-value=0.15 Score=46.66 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=19.6
Q ss_pred cEEEEeCCCCCChhHHHHhhcCC
Q psy7411 376 QITVLLGHNGAGKSTTMSMLTGL 398 (474)
Q Consensus 376 ei~gLLGpNGAGKTTLL~~L~GL 398 (474)
-.++++|+.|+|||||++.++.-
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 35789999999999999887763
No 469
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=89.17 E-value=0.17 Score=47.55 Aligned_cols=27 Identities=26% Similarity=0.441 Sum_probs=23.4
Q ss_pred CCcEEEEeCCCCCChhHHHHhhcCCCC
Q psy7411 374 QNQITVLLGHNGAGKSTTMSMLTGLII 400 (474)
Q Consensus 374 ~Gei~gLLGpNGAGKTTLL~~L~GL~~ 400 (474)
+|.++.+-|+.||||||.++.|..-++
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999876543
No 470
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.10 E-value=0.051 Score=53.32 Aligned_cols=22 Identities=32% Similarity=0.537 Sum_probs=19.9
Q ss_pred EEEeCCCCCChhHHHHhhcCCC
Q psy7411 378 TVLLGHNGAGKSTTMSMLTGLI 399 (474)
Q Consensus 378 ~gLLGpNGAGKTTLL~~L~GL~ 399 (474)
+.+.||+|+||||+++++++..
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999998754
No 471
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=89.04 E-value=0.13 Score=45.88 Aligned_cols=20 Identities=20% Similarity=0.418 Sum_probs=18.4
Q ss_pred EEEeCCCCCChhHHHHhhcC
Q psy7411 378 TVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 378 ~gLLGpNGAGKTTLL~~L~G 397 (474)
++++|+.|+|||||++.+++
T Consensus 21 i~v~G~~~~GKssli~~l~~ 40 (194)
T 2atx_A 21 CVVVGDGAVGKTCLLMSYAN 40 (194)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 68999999999999998885
No 472
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=89.02 E-value=0.12 Score=54.32 Aligned_cols=40 Identities=23% Similarity=0.307 Sum_probs=29.6
Q ss_pred CCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeec
Q psy7411 374 QNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDI 413 (474)
Q Consensus 374 ~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI 413 (474)
++.++.++|++|+||||++..|+..+....-++.+-..|.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~ 138 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDT 138 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 4678999999999999999999876655444554443343
No 473
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=88.99 E-value=0.17 Score=48.19 Aligned_cols=27 Identities=30% Similarity=0.320 Sum_probs=22.9
Q ss_pred eCCcEEEEeCCCCCChhHHHHhhcCCC
Q psy7411 373 YQNQITVLLGHNGAGKSTTMSMLTGLI 399 (474)
Q Consensus 373 ~~Gei~gLLGpNGAGKTTLL~~L~GL~ 399 (474)
.++.++++.|+.||||||+.+.|+.-+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 456788999999999999999998755
No 474
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=88.96 E-value=0.13 Score=46.54 Aligned_cols=20 Identities=20% Similarity=0.494 Sum_probs=18.6
Q ss_pred EEEeCCCCCChhHHHHhhcC
Q psy7411 378 TVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 378 ~gLLGpNGAGKTTLL~~L~G 397 (474)
++++|+.|+|||||++.+++
T Consensus 28 i~vvG~~~~GKSsli~~l~~ 47 (201)
T 2gco_A 28 LVIVGDGACGKTCLLIVFSK 47 (201)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 67999999999999999986
No 475
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=88.95 E-value=0.071 Score=55.63 Aligned_cols=38 Identities=26% Similarity=0.359 Sum_probs=28.8
Q ss_pred cEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeec
Q psy7411 376 QITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDI 413 (474)
Q Consensus 376 ei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI 413 (474)
.+++++|++|+||||+...|++.......++.+-..|.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~ 137 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADT 137 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccc
Confidence 58999999999999999999987654444555544443
No 476
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=88.80 E-value=0.19 Score=46.79 Aligned_cols=21 Identities=43% Similarity=0.817 Sum_probs=19.3
Q ss_pred EEEeCCCCCChhHHHHhhcCC
Q psy7411 378 TVLLGHNGAGKSTTMSMLTGL 398 (474)
Q Consensus 378 ~gLLGpNGAGKTTLL~~L~GL 398 (474)
++++|.+|+|||||++.++|.
T Consensus 40 VvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 40 VVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEECCTTSSHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999999863
No 477
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=88.72 E-value=0.2 Score=50.84 Aligned_cols=26 Identities=31% Similarity=0.483 Sum_probs=22.8
Q ss_pred CCcEEEEeCCCCCChhHHHHhhcCCC
Q psy7411 374 QNQITVLLGHNGAGKSTTMSMLTGLI 399 (474)
Q Consensus 374 ~Gei~gLLGpNGAGKTTLL~~L~GL~ 399 (474)
++.++.|+||.|+|||||...|+.-+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 45689999999999999999999755
No 478
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=88.68 E-value=0.19 Score=47.15 Aligned_cols=26 Identities=27% Similarity=0.267 Sum_probs=21.9
Q ss_pred CCcEEEEeCCCCCChhHHHHhhcCCC
Q psy7411 374 QNQITVLLGHNGAGKSTTMSMLTGLI 399 (474)
Q Consensus 374 ~Gei~gLLGpNGAGKTTLL~~L~GL~ 399 (474)
+|.++++-|+.||||||+.+.|+.-+
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 35678999999999999999987533
No 479
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=88.56 E-value=0.17 Score=52.54 Aligned_cols=22 Identities=27% Similarity=0.554 Sum_probs=20.3
Q ss_pred EEEEeCCCCCChhHHHHhhcCC
Q psy7411 377 ITVLLGHNGAGKSTTMSMLTGL 398 (474)
Q Consensus 377 i~gLLGpNGAGKTTLL~~L~GL 398 (474)
.++|+|++|+|||||++.|+|-
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5889999999999999999983
No 480
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=88.55 E-value=0.2 Score=47.40 Aligned_cols=29 Identities=21% Similarity=0.387 Sum_probs=25.6
Q ss_pred eCCcEEEEeCCCCCChhHHHHhhcCCCCC
Q psy7411 373 YQNQITVLLGHNGAGKSTTMSMLTGLIIP 401 (474)
Q Consensus 373 ~~Gei~gLLGpNGAGKTTLL~~L~GL~~P 401 (474)
.+|.++.+-|+.||||||..+.|..-+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 46899999999999999999999886655
No 481
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=88.55 E-value=0.21 Score=46.69 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=20.4
Q ss_pred CcEEEEeCCCCCChhHHHHhhcCC
Q psy7411 375 NQITVLLGHNGAGKSTTMSMLTGL 398 (474)
Q Consensus 375 Gei~gLLGpNGAGKTTLL~~L~GL 398 (474)
..-+.|.||.|+||||+.+.++..
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 345779999999999999999863
No 482
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=88.51 E-value=0.21 Score=45.24 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=17.9
Q ss_pred EEEEeCCCCCChhHHHHhhcC
Q psy7411 377 ITVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 377 i~gLLGpNGAGKTTLL~~L~G 397 (474)
.++++|+.|+|||||++.+++
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 368999999999999977663
No 483
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=88.45 E-value=0.07 Score=56.14 Aligned_cols=45 Identities=9% Similarity=0.045 Sum_probs=36.9
Q ss_pred ccccccCCCc-e-eEEechhhhhhHHHHHHhhCccCCccccc---chhccccccceeee
Q psy7411 44 IAGLIIPTSG-T-AYIDGHDIWYEMGKVRESLGLCPQYDLLF---EELTVEDHLQFFAK 97 (474)
Q Consensus 44 ~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~f~~~ 97 (474)
|++++.|++| + +++|| +.|+.+||+||...+| +.+||+||+ |..+
T Consensus 158 L~Gl~~p~~G~~pI~vdg--------~~~~~i~~vpq~~~l~~~~~~~tv~eni-~~~~ 207 (460)
T 2npi_A 158 LCSYALKFNAYQPLYINL--------DPQQPIFTVPGCISATPISDILDAQLPT-WGQS 207 (460)
T ss_dssp HHHTTHHHHCCCCEEEEC--------CTTSCSSSCSSCCEEEECCSCCCTTCTT-CSCB
T ss_pred HhCcccccCCceeEEEcC--------CccCCeeeeccchhhcccccccchhhhh-cccc
Confidence 6788999999 9 99999 2488999999998654 567999998 5443
No 484
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=88.45 E-value=0.33 Score=45.82 Aligned_cols=34 Identities=24% Similarity=0.382 Sum_probs=25.8
Q ss_pred eeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcC
Q psy7411 363 KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 363 ~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~G 397 (474)
..+...-+++ .|..+.+.||+|+|||||...|+.
T Consensus 23 ~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 23 RSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp CCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHT
T ss_pred eeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHH
Confidence 3444444443 567889999999999999988875
No 485
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=88.41 E-value=0.075 Score=59.65 Aligned_cols=43 Identities=16% Similarity=0.275 Sum_probs=33.8
Q ss_pred eeEEeCCcEEEEeCCCCCChhHHHHhhcCCCCCCeeEEEECCeec
Q psy7411 369 TLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDI 413 (474)
Q Consensus 369 sL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~~PtsG~i~i~G~dI 413 (474)
++.+.+++.+.|.||+|+||||+.+++++... .+.+.+++.++
T Consensus 505 ~~~~~~~~~vLL~GppGtGKT~Lakala~~~~--~~~i~v~~~~l 547 (806)
T 1ypw_A 505 KFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKGPEL 547 (806)
T ss_dssp CCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT--CCCCCCCCSSS
T ss_pred hcCCCCCceeEEECCCCCCHHHHHHHHHHHhC--CCEEEEechHh
Confidence 55678899999999999999999999999764 34455555544
No 486
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=88.38 E-value=0.17 Score=46.57 Aligned_cols=22 Identities=41% Similarity=0.561 Sum_probs=19.4
Q ss_pred EEEEeCCCCCChhHHHHhhcCC
Q psy7411 377 ITVLLGHNGAGKSTTMSMLTGL 398 (474)
Q Consensus 377 i~gLLGpNGAGKTTLL~~L~GL 398 (474)
.++++|+.|+|||||++.+++-
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 3689999999999999998863
No 487
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=88.19 E-value=0.21 Score=50.61 Aligned_cols=24 Identities=17% Similarity=0.281 Sum_probs=21.2
Q ss_pred cEEEEeCCCCCChhHHHHhhcCCC
Q psy7411 376 QITVLLGHNGAGKSTTMSMLTGLI 399 (474)
Q Consensus 376 ei~gLLGpNGAGKTTLL~~L~GL~ 399 (474)
.+++|.||+||||||+.+.|+..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 478999999999999999888754
No 488
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=88.10 E-value=0.24 Score=47.10 Aligned_cols=27 Identities=22% Similarity=0.388 Sum_probs=23.2
Q ss_pred eCCcEEEEeCCCCCChhHHHHhhcCCC
Q psy7411 373 YQNQITVLLGHNGAGKSTTMSMLTGLI 399 (474)
Q Consensus 373 ~~Gei~gLLGpNGAGKTTLL~~L~GL~ 399 (474)
.+|.++.+-|+.||||||+.+.|..-+
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l 45 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYL 45 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999887543
No 489
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=88.04 E-value=0.27 Score=49.87 Aligned_cols=49 Identities=20% Similarity=0.270 Sum_probs=34.2
Q ss_pred eeeeeeee---EEeCCcEEEEeCCCCCChhHHHHhhcCCC-CCCeeEEEECCee
Q psy7411 363 KAVDNLTL---DMYQNQITVLLGHNGAGKSTTMSMLTGLI-IPTSGTAYIDGHD 412 (474)
Q Consensus 363 ~aL~~lsL---~i~~Gei~gLLGpNGAGKTTLL~~L~GL~-~PtsG~i~i~G~d 412 (474)
..||.+ + -+++|+++.+.|++|+||||+...++.-. ......++++.+.
T Consensus 49 ~~LD~~-Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~ 101 (356)
T 1u94_A 49 LSLDIA-LGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 101 (356)
T ss_dssp HHHHHH-TSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred HHHHHH-hccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 445554 3 38899999999999999999987766432 2233456666543
No 490
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=88.02 E-value=0.16 Score=45.99 Aligned_cols=20 Identities=25% Similarity=0.451 Sum_probs=18.4
Q ss_pred EEEeCCCCCChhHHHHhhcC
Q psy7411 378 TVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 378 ~gLLGpNGAGKTTLL~~L~G 397 (474)
++++|+.|+|||||++.+++
T Consensus 32 i~vvG~~~vGKSsli~~l~~ 51 (201)
T 2hup_A 32 LVLVGDASVGKTCVVQRFKT 51 (201)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHhh
Confidence 68999999999999998875
No 491
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=87.83 E-value=0.25 Score=49.73 Aligned_cols=25 Identities=24% Similarity=0.486 Sum_probs=21.3
Q ss_pred CcEEEEeCCCCCChhHHHHhhcCCC
Q psy7411 375 NQITVLLGHNGAGKSTTMSMLTGLI 399 (474)
Q Consensus 375 Gei~gLLGpNGAGKTTLL~~L~GL~ 399 (474)
+.++++.||+|+|||||...|+--.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4578999999999999999987543
No 492
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=87.81 E-value=0.16 Score=52.70 Aligned_cols=25 Identities=16% Similarity=0.311 Sum_probs=21.8
Q ss_pred CcEEEEeCCCCCChhHHHHhhcCCC
Q psy7411 375 NQITVLLGHNGAGKSTTMSMLTGLI 399 (474)
Q Consensus 375 Gei~gLLGpNGAGKTTLL~~L~GL~ 399 (474)
+..+.|.||+|+|||||++++++..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3567899999999999999999855
No 493
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=87.79 E-value=0.25 Score=48.87 Aligned_cols=36 Identities=11% Similarity=0.158 Sum_probs=29.6
Q ss_pred ceeeeeeeeEEeCCcEEEEeCCCCCChhHHHHhhcC
Q psy7411 362 KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 362 ~~aL~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~G 397 (474)
.+.||++.--+++|+++.+.|++|+||||++..++.
T Consensus 55 ~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~ 90 (315)
T 3bh0_A 55 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 90 (315)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred hHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 345666665689999999999999999999876653
No 494
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=87.64 E-value=0.17 Score=45.75 Aligned_cols=21 Identities=24% Similarity=0.358 Sum_probs=18.8
Q ss_pred EEEEeCCCCCChhHHHHhhcC
Q psy7411 377 ITVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 377 i~gLLGpNGAGKTTLL~~L~G 397 (474)
.++++|+.|+|||||++.+++
T Consensus 11 ki~i~G~~~~GKTsli~~l~~ 31 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTS 31 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 378999999999999998875
No 495
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=87.55 E-value=0.26 Score=46.07 Aligned_cols=21 Identities=48% Similarity=0.629 Sum_probs=18.6
Q ss_pred EEEEeCCCCCChhHHHHhhcC
Q psy7411 377 ITVLLGHNGAGKSTTMSMLTG 397 (474)
Q Consensus 377 i~gLLGpNGAGKTTLL~~L~G 397 (474)
++.++||.||||+|..+.|+-
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999998875
No 496
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=87.46 E-value=0.25 Score=49.69 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=21.0
Q ss_pred cEEEEeCCCCCChhHHHHhhcCCC
Q psy7411 376 QITVLLGHNGAGKSTTMSMLTGLI 399 (474)
Q Consensus 376 ei~gLLGpNGAGKTTLL~~L~GL~ 399 (474)
.++.|+||+|+||||+.+.|+.-+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999998644
No 497
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=87.35 E-value=0.21 Score=45.89 Aligned_cols=29 Identities=28% Similarity=0.386 Sum_probs=22.5
Q ss_pred EEEeCCCCCChhHHHHhhcCC-----CCCCeeEE
Q psy7411 378 TVLLGHNGAGKSTTMSMLTGL-----IIPTSGTA 406 (474)
Q Consensus 378 ~gLLGpNGAGKTTLL~~L~GL-----~~PtsG~i 406 (474)
++++|+.|+|||||++.+++- ..|+.|..
T Consensus 30 i~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~ 63 (214)
T 3q3j_B 30 LVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFEN 63 (214)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEE
T ss_pred EEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeee
Confidence 679999999999999988763 24555543
No 498
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=87.04 E-value=0.29 Score=44.66 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=19.0
Q ss_pred CCcEEEEeCCCCCChhHHH-Hhh
Q psy7411 374 QNQITVLLGHNGAGKSTTM-SML 395 (474)
Q Consensus 374 ~Gei~gLLGpNGAGKTTLL-~~L 395 (474)
+|.+..+.||.|+||||++ +++
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~ 24 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFV 24 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHH
Confidence 4789999999999999997 444
No 499
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=86.80 E-value=0.13 Score=51.73 Aligned_cols=53 Identities=11% Similarity=0.087 Sum_probs=46.1
Q ss_pred ccccccccCCCceeEEechhhh-----hhHHHHHHhhC--ccCCcccccchhccccccce
Q psy7411 42 DDIAGLIIPTSGTAYIDGHDIW-----YEMGKVRESLG--LCPQYDLLFEELTVEDHLQF 94 (474)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~f 94 (474)
--|++++.|+.|++.++|.|+. ++.+..++++| +++|...+++.+||.+|+.+
T Consensus 147 ~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~ 206 (328)
T 3e70_C 147 AKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQH 206 (328)
T ss_dssp HHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHH
Confidence 3477889999999999999975 46777788888 89999999999999999864
No 500
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=86.72 E-value=0.39 Score=48.42 Aligned_cols=45 Identities=24% Similarity=0.338 Sum_probs=32.9
Q ss_pred eeeeeEEeCCcEEEEeCCCCCChhHHHHhhcCCC-----------CCCeeEEEECC
Q psy7411 366 DNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLI-----------IPTSGTAYIDG 410 (474)
Q Consensus 366 ~~lsL~i~~Gei~gLLGpNGAGKTTLL~~L~GL~-----------~PtsG~i~i~G 410 (474)
+.+.++++.--.++++|..++|||||++.|++-. .|+-|.+.+.+
T Consensus 149 ~~~~leLk~la~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~ 204 (342)
T 1lnz_A 149 RYIVLELKVLADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDD 204 (342)
T ss_dssp EEEEEEEECCCCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSS
T ss_pred hhHhhhhhhcCeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCC
Confidence 3445555544458999999999999999998732 45667777765
Done!