RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7411
(474 letters)
>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This
model describes the photoreceptor protein (rim protein)
in eukaryotes. It is the member of ABC transporter
superfamily. Rim protein is a membrane glycoprotein which
is localized in the photoreceptor outer segment discs.
Mutation/s in its genetic loci is implicated in the
recessive Stargardt's disease [Transport and binding
proteins, Other].
Length = 2272
Score = 191 bits (486), Expect = 1e-52
Identities = 113/301 (37%), Positives = 167/301 (55%), Gaps = 21/301 (6%)
Query: 154 CFLV--VFS-GSTAATVGGLVWFGTYSPYIILQPKYSLMTFQQKLYTCLFSNSAMGYAFQ 210
CFL+ FS S AA G+++F Y P+I+ MT K L S A G+ +
Sbjct: 748 CFLLSTFFSKASLAAACSGVIYFTLYLPHILCFAWQDRMTADLKTAVSLLSPVAFGFGTE 807
Query: 211 NLLMYEGIGEGVQWNNVWKSVTPDDELCLGHILSMMAIMGVIHLVAALYIEAVWPGSTGL 270
L+ +E G G+QW+N+ S DE + MM + ++ + A Y++ V+PG G
Sbjct: 808 YLVRFEEQGLGLQWSNIGNSPLEGDEFSFLLSMKMMLLDAALYGLLAWYLDQVFPGDYGT 867
Query: 271 PLPWYYPIQATYWLEGEVGFCLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTM 330
PLPWY+ +Q +YWL GE C T+ + +K + LT +M + G S
Sbjct: 868 PLPWYFLLQESYWLGGE--GCSTREERALEKT-EPLTEEMEDPEHP-----EGINDSFFE 919
Query: 331 SMLTGYKRKSKDIVNASGIQLRGLTKIYK-TGKKAVDNLTLDMYQNQITVLLGHNGAGKS 389
L G G+ ++ L KI++ +G+ AVD L + Y+NQIT LGHNGAGK+
Sbjct: 920 RELPGL---------VPGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKT 970
Query: 390 TTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAKG 449
TT+S+LTGL+ PTSGT + G DI + VR+SLG+CPQ+++LF LTV +H+ F+A+
Sbjct: 971 TTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQL 1030
Query: 450 K 450
K
Sbjct: 1031 K 1031
Score = 76.6 bits (188), Expect = 1e-14
Identities = 41/101 (40%), Positives = 59/101 (58%), Gaps = 1/101 (0%)
Query: 349 IQLRGLTKIYK-TGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAY 407
++L LTK+Y T AVD L + + + LLG NGAGK+TT MLTG TSG A
Sbjct: 1938 LRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDAT 1997
Query: 408 IDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAK 448
+ G I + V +++G CPQ+D + + LT +HL +A+
Sbjct: 1998 VAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYAR 2038
Score = 63.9 bits (155), Expect = 1e-10
Identities = 26/56 (46%), Positives = 40/56 (71%)
Query: 44 IAGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAKWR 99
+ GL+ PTSGT + G DI + VR+SLG+CPQ+++LF LTV +H+ F+A+ +
Sbjct: 976 LTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLK 1031
Score = 43.5 bits (102), Expect = 2e-04
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 51 TSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAKWRITYSSLLR--- 107
TSG A + G I + V +++G CPQ+D + + LT +HL +A+ R + +
Sbjct: 1992 TSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVA 2051
Query: 108 NWTI 111
NW+I
Sbjct: 2052 NWSI 2055
Score = 41.2 bits (96), Expect = 0.001
Identities = 23/45 (51%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 292 LTKIYK-TGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
LTK+Y T AVD L + + + LLG NGAGK+TT MLTG
Sbjct: 1943 LTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTG 1987
>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid
transporters, subfamily A. The ABCA subfamily mediates
the transport of a variety of lipid compounds. Mutations
of members of ABCA subfamily are associated with human
genetic diseases, such as, familial high-density
lipoprotein (HDL) deficiency, neonatal surfactant
deficiency, degenerative retinopathies, and congenital
keratinization disorders. The ABCA1 protein is involved
in disorders of cholesterol transport and high-density
lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein
transports vitamin A derivatives in the outer segments
of photoreceptor cells, and therefore, performs a
crucial step in the visual cycle. The ABCA genes are not
present in yeast. However, evolutionary studies of ABCA
genes indicate that they arose as transporters that
subsequently duplicated and that certain sets of ABCA
genes were lost in different eukaryotic lineages.
Length = 220
Score = 160 bits (407), Expect = 1e-46
Identities = 59/100 (59%), Positives = 79/100 (79%), Gaps = 1/100 (1%)
Query: 349 IQLRGLTKIYKTG-KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAY 407
+Q+R LTK YK G K AVD+L+L++Y+ +I LLGHNGAGK+TT+ MLTG + PTSGTAY
Sbjct: 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAY 60
Query: 408 IDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFA 447
I+G+ I + R+SLG CPQ+D LF+ELTV +HL+F+A
Sbjct: 61 INGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYA 100
Score = 85.2 bits (212), Expect = 5e-19
Identities = 29/53 (54%), Positives = 40/53 (75%)
Query: 44 IAGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFA 96
+ G + PTSGTAYI+G+ I + R+SLG CPQ+D LF+ELTV +HL+F+A
Sbjct: 48 LTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYA 100
Score = 78.3 bits (194), Expect = 1e-16
Identities = 30/51 (58%), Positives = 39/51 (76%), Gaps = 1/51 (1%)
Query: 292 LTKIYKTG-KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSK 341
LTK YK G K AVD+L+L++Y+ +I LLGHNGAGK+TT+ MLTG R +
Sbjct: 6 LTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTS 56
>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase
component [Defense mechanisms].
Length = 293
Score = 135 bits (341), Expect = 3e-36
Identities = 44/100 (44%), Positives = 65/100 (65%)
Query: 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYI 408
I++R LTK Y K A+D ++ ++ +I LLG NGAGK+T + +L GL+ PTSG +
Sbjct: 5 IEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILV 64
Query: 409 DGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAK 448
G+D+ E KVR +G PQ L+ ELTV ++L+FFA+
Sbjct: 65 LGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFAR 104
Score = 71.6 bits (176), Expect = 8e-14
Identities = 25/54 (46%), Positives = 36/54 (66%)
Query: 44 IAGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAK 97
+AGL+ PTSG + G+D+ E KVR +G PQ L+ ELTV ++L+FFA+
Sbjct: 51 LAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFAR 104
Score = 70.0 bits (172), Expect = 3e-13
Identities = 19/50 (38%), Positives = 30/50 (60%)
Query: 292 LTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSK 341
LTK Y K A+D ++ ++ +I LLG NGAGK+T + +L G + +
Sbjct: 10 LTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTS 59
>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the
drug resistance transporter and related proteins,
subfamily A. This family of ATP-binding proteins
belongs to a multi-subunit transporter involved in drug
resistance (BcrA and DrrA), nodulation, lipid transport,
and lantibiotic immunity. In bacteria and archaea, these
transporters usually include an ATP-binding protein and
one or two integral membrane proteins. Eukaryotic
systems of the ABCA subfamily display ABC domains that
are quite similar to this family. The ATP-binding domain
shows the highest similarity between all members of the
ABC transporter family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 173
Score = 125 bits (316), Expect = 5e-34
Identities = 37/97 (38%), Positives = 61/97 (62%), Gaps = 1/97 (1%)
Query: 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYI 408
I++R L+K Y K A+D+++L + + +I LLG NGAGK+T + ++ GL+ P SG +
Sbjct: 1 IEVRNLSKRYGK-KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKV 59
Query: 409 DGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQF 445
G DI E +V+ +G P+ L+E LTV ++L+
Sbjct: 60 LGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKL 96
Score = 67.0 bits (165), Expect = 4e-13
Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 292 LTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSK 341
L+K Y K A+D+++L + + +I LLG NGAGK+T + ++ G +
Sbjct: 6 LSKRYGK-KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDS 54
Score = 64.0 bits (157), Expect = 5e-12
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 44 IAGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQF 94
I GL+ P SG + G DI E +V+ +G P+ L+E LTV ++L+
Sbjct: 46 ILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKL 96
>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport
system, ATPase component. The biological function of
this family is not well characterized, but display ABC
domains similar to members of ABCA subfamily. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 95.3 bits (238), Expect = 1e-22
Identities = 39/99 (39%), Positives = 57/99 (57%), Gaps = 2/99 (2%)
Query: 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYI 408
+QL LTK Y K+A+D ++L + + LLG NGAGK+T M +L L P+SGT I
Sbjct: 1 LQLENLTKRYG-KKRALDGVSLTL-GPGMYGLLGPNGAGKTTLMRILATLTPPSSGTIRI 58
Query: 409 DGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFA 447
DG D+ + K+R +G PQ ++ TV + L + A
Sbjct: 59 DGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIA 97
Score = 51.0 bits (123), Expect = 2e-07
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 292 LTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSK 341
LTK Y K+A+D ++L + + LLG NGAGK+T M +L S
Sbjct: 6 LTKRYG-KKRALDGVSLTL-GPGMYGLLGPNGAGKTTLMRILATLTPPSS 53
Score = 48.7 bits (117), Expect = 1e-06
Identities = 19/53 (35%), Positives = 29/53 (54%)
Query: 44 IAGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFA 96
+A L P+SGT IDG D+ + K+R +G PQ ++ TV + L + A
Sbjct: 45 LATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIA 97
>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component
[Energy production and conversion / Inorganic ion
transport and metabolism].
Length = 245
Score = 94.0 bits (234), Expect = 8e-22
Identities = 36/117 (30%), Positives = 63/117 (53%)
Query: 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYI 408
+++ LTK Y + +AV +++ + + +IT LLG NGAGK+T + M+ L+IP SG I
Sbjct: 2 LEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTI 61
Query: 409 DGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLLMM 465
DG D + VR +G+ L+ LT ++L++FA+ + + +
Sbjct: 62 DGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELS 118
Score = 51.6 bits (124), Expect = 2e-07
Identities = 20/53 (37%), Positives = 29/53 (54%)
Query: 44 IAGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFA 96
IA L+IP SG IDG D + VR +G+ L+ LT ++L++FA
Sbjct: 48 IATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFA 100
Score = 48.2 bits (115), Expect = 3e-06
Identities = 18/44 (40%), Positives = 29/44 (65%)
Query: 292 LTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
LTK Y + +AV +++ + + +IT LLG NGAGK+T + M+
Sbjct: 7 LTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIAT 50
>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding
protein. DrrA is the ATP-binding protein component of a
bacterial exporter complex that confers resistance to
the antibiotics daunorubicin and doxorubicin. In
addition to DrrA, the complex includes an integral
membrane protein called DrrB. DrrA belongs to the ABC
family of transporters and shares sequence and
functional similarities with a protein found in cancer
cells called P-glycoprotein. ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region in
addition to the Walker A motif/P-loop and Walker B motif
commonly found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 220
Score = 92.4 bits (230), Expect = 2e-21
Identities = 39/100 (39%), Positives = 60/100 (60%), Gaps = 1/100 (1%)
Query: 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYI 408
I++ L K Y +AV ++ + + +I LLG NGAGK+TT+ MLT L+ PTSG A +
Sbjct: 1 IEVENLVKKYG-DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATV 59
Query: 409 DGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAK 448
GHD+ E +VR +G+ Q + +ELT ++L A+
Sbjct: 60 AGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHAR 99
Score = 49.7 bits (119), Expect = 7e-07
Identities = 19/54 (35%), Positives = 31/54 (57%)
Query: 44 IAGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAK 97
+ L+ PTSG A + GHD+ E +VR +G+ Q + +ELT ++L A+
Sbjct: 46 LTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHAR 99
Score = 44.7 bits (106), Expect = 4e-05
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 292 LTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
L K Y +AV ++ + + +I LLG NGAGK+TT+ MLT
Sbjct: 6 LVKKYG-DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTT 48
>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter
ATP-binding subunit. This model describes daunorubicin
resistance ABC transporter, ATP binding subunit in
bacteria and archaea. This model is restricted in its
scope to preferentially recognize the ATP binding
subunit associated with effux of the drug, daunorubicin.
This transport system belong to the larger ATP-Binding
Cassette (ABC) transporter superfamily. The
characteristic feature of these transporter is the
obligatory coupling of ATP hydrolysis to substrate
translocation. The minimal configuration of bacterial
ABC transport system: an ATPase or ATP binding subunit;
An integral membrane protein; a hydrophilic polypetpide,
which likely functions as substrate binding protein. In
eukaryotes proteins of similar function include p-gyco
proteins, multidrug resistance protein etc [Transport
and binding proteins, Other].
Length = 302
Score = 93.2 bits (232), Expect = 4e-21
Identities = 38/85 (44%), Positives = 56/85 (65%)
Query: 363 KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRE 422
KAVD + + + ++ LG NGAGK+TT+ MLT L+ PTSGTA + G+D+ E KVR
Sbjct: 7 KAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRR 66
Query: 423 SLGLCPQYDLLFEELTVEDHLQFFA 447
S+G+ PQY + E+LT ++L+
Sbjct: 67 SIGIVPQYASVDEDLTGRENLEMMG 91
Score = 50.5 bits (121), Expect = 8e-07
Identities = 22/53 (41%), Positives = 34/53 (64%)
Query: 44 IAGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFA 96
+ L+ PTSGTA + G+D+ E KVR S+G+ PQY + E+LT ++L+
Sbjct: 39 LTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENLEMMG 91
Score = 47.8 bits (114), Expect = 5e-06
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 301 KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
KAVD + + + ++ LG NGAGK+TT+ MLT
Sbjct: 7 KAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTT 41
>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport
system. The ABC transporters belonging to the YhbG
family are similar to members of the Mj1267_LivG family,
which is involved in the transport of branched-chain
amino acids. The genes yhbG and yhbN are located in a
single operon and may function together in cell envelope
during biogenesis. YhbG is the putative ATP-binding
cassette component and YhbN is the putative
periplasmic-binding protein. Depletion of each gene
product leads to growth arrest, irreversible cell damage
and loss of viability in E. coli. The YhbG homolog
(NtrA) is essential in Rhizobium meliloti, a symbiotic
nitrogen-fixing bacterium.
Length = 232
Score = 90.7 bits (226), Expect = 8e-21
Identities = 40/98 (40%), Positives = 59/98 (60%), Gaps = 5/98 (5%)
Query: 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYI 408
++ L+K Y +K V+ ++L + Q +I LLG NGAGK+TT M+ GL+ P SG +
Sbjct: 1 LRAENLSKRYGK-RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILL 59
Query: 409 DGHDIW-YEMGKVRESLGLC--PQYDLLFEELTVEDHL 443
DG DI M K R LG+ PQ +F +LTVE+++
Sbjct: 60 DGQDITKLPMHK-RARLGIGYLPQEASIFRKLTVEENI 96
Score = 52.9 bits (128), Expect = 7e-08
Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 292 LTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
L+K Y +K V+ ++L + Q +I LLG NGAGK+TT M+ G
Sbjct: 6 LSKRYGK-RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVG 48
Score = 44.5 bits (106), Expect = 4e-05
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
Query: 44 IAGLIIPTSGTAYIDGHDIW-YEMGKVRESLGLC--PQYDLLFEELTVEDHL 92
I GL+ P SG +DG DI M K R LG+ PQ +F +LTVE+++
Sbjct: 46 IVGLVKPDSGKILLDGQDITKLPMHK-RARLGIGYLPQEASIFRKLTVEENI 96
>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC
transporter ATP-binding subunit GldA. Members of this
protein family are exclusive to the Bacteroidetes phylum
(previously Cytophaga-Flavobacteria-Bacteroides). GldA
is an ABC transporter ATP-binding protein (pfam00005)
linked to a type of rapid surface gliding motility found
in certain Bacteroidetes, such as Flavobacterium
johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA
abolish the gliding phenotype. Gliding motility appears
closely linked to chitin utilization in the model
species Flavobacterium johnsoniae. Bacteroidetes with
members of this protein family appear to have all of the
genes associated with gliding motility.
Length = 301
Score = 87.9 bits (218), Expect = 2e-19
Identities = 36/99 (36%), Positives = 64/99 (64%), Gaps = 1/99 (1%)
Query: 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYI 408
I++ LTK+Y T + A+D ++ + + +I LG NGAGKSTTM ++TG + P SG+ +
Sbjct: 3 IRVSSLTKLYGT-QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQV 61
Query: 409 DGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFA 447
G D+ +V+ ++G P+++ L+ ++ V ++LQF A
Sbjct: 62 CGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIA 100
Score = 52.1 bits (125), Expect = 2e-07
Identities = 22/45 (48%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Query: 292 LTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGY 336
LTK+Y T + A+D ++ + + +I LG NGAGKSTTM ++TGY
Sbjct: 8 LTKLYGT-QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGY 51
Score = 45.5 bits (108), Expect = 3e-05
Identities = 16/53 (30%), Positives = 32/53 (60%)
Query: 44 IAGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFA 96
I G + P SG+ + G D+ +V+ ++G P+++ L+ ++ V ++LQF A
Sbjct: 48 ITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIA 100
>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of
the bacitracin-resistance transporter. The BcrA
subfamily represents ABC transporters involved in
peptide antibiotic resistance. Bacitracin is a
dodecapeptide antibiotic produced by B. licheniformis
and B. subtilis. The synthesis of bacitracin is
non-ribosomally catalyzed by a multi-enzyme complex
BcrABC. Bacitracin has potent antibiotic activity
against gram-positive bacteria. The inhibition of
peptidoglycan biosynthesis is the best characterized
bacterial effect of bacitracin. The bacitracin
resistance of B. licheniformis is mediated by the ABC
transporter Bcr which is composed of two identical BcrA
ATP-binding subunits and one each of the integral
membrane proteins, BcrB and BcrC. B. subtilis cells
carrying bcr genes on high-copy number plasmids develop
collateral detergent sensitivity, a similar phenomenon
in human cells with overexpressed multi-drug resistance
P-glycoprotein.
Length = 208
Score = 85.3 bits (212), Expect = 3e-19
Identities = 31/102 (30%), Positives = 54/102 (52%), Gaps = 2/102 (1%)
Query: 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYI 408
++ LTK Y K+ +D+++L + + +I LG NGAGK+TTM ++ GLI P SG
Sbjct: 1 LKTNDLTKTYG-KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITF 59
Query: 409 DGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAKGK 450
DG + + + +G + + LT ++L+ A+
Sbjct: 60 DG-KSYQKNIEALRRIGALIEAPGFYPNLTARENLRLLARLL 100
Score = 59.9 bits (146), Expect = 2e-10
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 291 CLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSKDIV 344
LTK Y K+ +D+++L + + +I LG NGAGK+TTM ++ G + +
Sbjct: 5 DLTKTYG-KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEI 57
Score = 31.8 bits (73), Expect = 0.54
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 44 IAGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAK 97
I GLI P SG DG + + + +G + + LT ++L+ A+
Sbjct: 46 ILGLIKPDSGEITFDG-KSYQKNIEALRRIGALIEAPGFYPNLTARENLRLLAR 98
>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of
the Na+ transporter. NatA is the ATPase component of a
bacterial ABC-type Na+ transport system called NatAB,
which catalyzes ATP-dependent electrogenic Na+ extrusion
without mechanically coupled proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of a single ATP-binding
protein and a single integral membrane protein.
Length = 218
Score = 85.5 bits (212), Expect = 4e-19
Identities = 43/114 (37%), Positives = 63/114 (55%), Gaps = 8/114 (7%)
Query: 349 IQLRGLTKIYKTGKK---AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGT 405
I LTK ++ KK AVD ++ + ++T LLG NGAGK+TT+ ML GL+ P +G
Sbjct: 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGF 61
Query: 406 AYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFA-----KGKEFNG 454
A +DG D+ E + R LG L++ LT ++L++FA KG E
Sbjct: 62 ATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTA 115
Score = 48.1 bits (115), Expect = 2e-06
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 292 LTKIYKTGKK---AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSKDIVNASG 348
LTK ++ KK AVD ++ + ++T LLG NGAGK+TT+ ML G G
Sbjct: 7 LTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDG 66
Query: 349 I 349
Sbjct: 67 F 67
Score = 42.0 bits (99), Expect = 3e-04
Identities = 19/53 (35%), Positives = 31/53 (58%)
Query: 44 IAGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFA 96
+AGL+ P +G A +DG D+ E + R LG L++ LT ++L++FA
Sbjct: 51 LAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFA 103
>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 300
Score = 84.7 bits (210), Expect = 3e-18
Identities = 38/104 (36%), Positives = 63/104 (60%), Gaps = 4/104 (3%)
Query: 347 SGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTA 406
+++ G+TK + KKAVDN++ ++ +I LLG NGAGK+TT M+ GL+ PT G
Sbjct: 1 MALEIEGVTKSFGD-KKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEI 59
Query: 407 YIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAKGK 450
+G + E+ + +G P+ L+ ++TVED L++ A+ K
Sbjct: 60 TWNGGPLSQEI---KNRIGYLPEERGLYPKMTVEDQLKYLAELK 100
Score = 50.8 bits (122), Expect = 6e-07
Identities = 21/44 (47%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 292 LTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
+TK + KKAVDN++ ++ +I LLG NGAGK+TT M+ G
Sbjct: 8 VTKSFGD-KKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILG 50
Score = 37.3 bits (87), Expect = 0.012
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 44 IAGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFA 96
I GL+ PT G +G + E+ + +G P+ L+ ++TVED L++ A
Sbjct: 48 ILGLLEPTEGEITWNGGPLSQEI---KNRIGYLPEERGLYPKMTVEDQLKYLA 97
>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of
the osmoprotectant transporter. OpuCA is a the ATP
binding component of a bacterial solute transporter that
serves a protective role to cells growing in a
hyperosmolar environment. ABC (ATP-binding cassette)
transporter nucleotide-binding domain; ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition, to the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 242
Score = 83.1 bits (206), Expect = 4e-18
Identities = 41/94 (43%), Positives = 60/94 (63%), Gaps = 1/94 (1%)
Query: 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYI 408
I+ +TK Y GKKAV+NL L++ + + VL+G +G+GK+TTM M+ LI PTSG +I
Sbjct: 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFI 60
Query: 409 DGHDIW-YEMGKVRESLGLCPQYDLLFEELTVED 441
DG DI + ++R +G Q LF +TVE+
Sbjct: 61 DGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEE 94
Score = 54.2 bits (131), Expect = 3e-08
Identities = 21/42 (50%), Positives = 32/42 (76%)
Query: 292 LTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSML 333
+TK Y GKKAV+NL L++ + + VL+G +G+GK+TTM M+
Sbjct: 6 VTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMI 47
Score = 30.3 bits (69), Expect = 1.8
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 47 LIIPTSGTAYIDGHDIW-YEMGKVRESLGLCPQYDLLFEELTVED 90
LI PTSG +IDG DI + ++R +G Q LF +TVE+
Sbjct: 50 LIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEE 94
>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an
uncharacterized transporter. This subgroup is related
to the subfamily A transporters involved in drug
resistance, nodulation, lipid transport, and bacteriocin
and lantibiotic immunity. In eubacteria and archaea, the
typical organization consists of one ABC and one or two
integral membranes. ABC transporters are a large family
of proteins involved in the transport of a wide variety
of different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region in addition to the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 210
Score = 80.0 bits (198), Expect = 2e-17
Identities = 31/99 (31%), Positives = 55/99 (55%), Gaps = 4/99 (4%)
Query: 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYI 408
+++ +TK + A+D+++ + + +I LLG NGAGK+TT+ M+ G+I+P SG
Sbjct: 1 LEVENVTKRFGR-VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLF 59
Query: 409 DGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFA 447
DG + R +G P+ L+ ++ V D L + A
Sbjct: 60 DGKPLDIA---ARNRIGYLPEERGLYPKMKVIDQLVYLA 95
Score = 54.6 bits (132), Expect = 1e-08
Identities = 17/44 (38%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 292 LTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
+TK + A+D+++ + + +I LLG NGAGK+TT+ M+ G
Sbjct: 6 VTKRFGR-VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILG 48
Score = 30.3 bits (69), Expect = 1.5
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 44 IAGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAKWR 99
I G+I+P SG DG + R +G P+ L+ ++ V D L + A+ +
Sbjct: 46 ILGIILPDSGEVLFDGKPLDIA---ARNRIGYLPEERGLYPKMKVIDQLVYLAQLK 98
>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette
component of monosaccharide transport system. This
family represents the domain I of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the uptake
of monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. Pentoses include xylose,
arabinose, and ribose. Important hexoses include
glucose, galactose, and fructose. In members of the
Carb_monos family, the single hydrophobic gene product
forms a homodimer while the ABC protein represents a
fusion of two nucleotide-binding domains. However, it is
assumed that two copies of the ABC domains are present
in the assembled transporter.
Length = 163
Score = 78.6 bits (195), Expect = 3e-17
Identities = 29/65 (44%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Query: 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYI 408
++LRG+TK + G KA+D ++L + + ++ LLG NGAGKST M +L+GL P SG +
Sbjct: 1 LELRGITKRF-GGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILV 59
Query: 409 DGHDI 413
DG ++
Sbjct: 60 DGKEV 64
Score = 54.4 bits (132), Expect = 8e-09
Identities = 20/45 (44%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 292 LTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGY 336
+TK + G KA+D ++L + + ++ LLG NGAGKST M +L+G
Sbjct: 6 ITKRF-GGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGL 49
>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase
component [General function prediction only].
Length = 243
Score = 80.7 bits (200), Expect = 3e-17
Identities = 37/99 (37%), Positives = 58/99 (58%), Gaps = 7/99 (7%)
Query: 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYI 408
+ L K YK +K V++++L++ +I LLG NGAGK+TT M+ GL+ P SG +
Sbjct: 5 LVAENLAKSYK-KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILL 63
Query: 409 DGHDI----WYEMGKVRESLGLCPQYDLLFEELTVEDHL 443
D DI ++ + R +G PQ +F +LTVED++
Sbjct: 64 DDEDITKLPMHK--RARLGIGYLPQEASIFRKLTVEDNI 100
Score = 49.5 bits (119), Expect = 9e-07
Identities = 20/44 (45%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 292 LTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
L K YK +K V++++L++ +I LLG NGAGK+TT M+ G
Sbjct: 10 LAKSYK-KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVG 52
Score = 36.8 bits (86), Expect = 0.016
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Query: 44 IAGLIIPTSGTAYIDGHDI----WYEMGKVRESLGLCPQYDLLFEELTVEDHL 92
I GL+ P SG +D DI ++ + R +G PQ +F +LTVED++
Sbjct: 50 IVGLVRPDSGKILLDDEDITKLPMHK--RARLGIGYLPQEASIFRKLTVEDNI 100
>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the
carbohydrate and solute transporters-like. This family
is comprised of proteins involved in the transport of
apparently unrelated solutes and proteins specific for
di- and oligosaccharides and polyols. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 213
Score = 79.1 bits (196), Expect = 6e-17
Identities = 34/97 (35%), Positives = 57/97 (58%), Gaps = 2/97 (2%)
Query: 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYI 408
++L+GL+K Y +A+D+L+L + + LLG +G GK+T + ++ GL P SG I
Sbjct: 1 LELKGLSKTYG-SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILI 59
Query: 409 DGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQF 445
DG D+ + R ++G+ Q LF LTV +++ F
Sbjct: 60 DGRDV-TGVPPERRNIGMVFQDYALFPHLTVAENIAF 95
Score = 46.0 bits (110), Expect = 1e-05
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 292 LTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
L+K Y +A+D+L+L + + LLG +G GK+T + ++ G
Sbjct: 6 LSKTYG-SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAG 48
Score = 40.2 bits (95), Expect = 0.001
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 44 IAGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQF 94
IAGL P SG IDG D+ + R ++G+ Q LF LTV +++ F
Sbjct: 46 IAGLERPDSGEILIDGRDV-TGVPPERRNIGMVFQDYALFPHLTVAENIAF 95
>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter
nucleotide-binding domain. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 157
Score = 77.3 bits (191), Expect = 8e-17
Identities = 31/81 (38%), Positives = 49/81 (60%), Gaps = 2/81 (2%)
Query: 350 QLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYID 409
++ L+ Y G+ A+DN++L + +I L+G NG+GKST + + GL+ PTSG ID
Sbjct: 1 EIENLSFRYG-GRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILID 59
Query: 410 GHDIW-YEMGKVRESLGLCPQ 429
G DI + ++R +G PQ
Sbjct: 60 GKDIAKLPLEELRRRIGYVPQ 80
Score = 46.1 bits (110), Expect = 5e-06
Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 292 LTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
L+ Y G+ A+DN++L + +I L+G NG+GKST + + G
Sbjct: 5 LSFRYG-GRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAG 47
Score = 38.0 bits (89), Expect = 0.003
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 44 IAGLIIPTSGTAYIDGHDIW-YEMGKVRESLGLCPQ 78
IAGL+ PTSG IDG DI + ++R +G PQ
Sbjct: 45 IAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQ 80
>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to
organic solvents, ATPase component [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 263
Score = 79.9 bits (198), Expect = 8e-17
Identities = 36/102 (35%), Positives = 62/102 (60%), Gaps = 7/102 (6%)
Query: 349 IQLRGLTKIYKTGKKAV-DNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAY 407
I++RG+TK + G + + D + LD+ + +I +LG +G+GKST + ++ GL+ P G
Sbjct: 9 IEVRGVTKSF--GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEIL 66
Query: 408 IDGHDIW----YEMGKVRESLGLCPQYDLLFEELTVEDHLQF 445
IDG DI E+ ++R+ +G+ Q LF LTV +++ F
Sbjct: 67 IDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAF 108
Score = 42.6 bits (101), Expect = 2e-04
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 44 IAGLIIPTSGTAYIDGHDIW----YEMGKVRESLGLCPQYDLLFEELTVEDHLQF 94
I GL+ P G IDG DI E+ ++R+ +G+ Q LF LTV +++ F
Sbjct: 54 ILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAF 108
Score = 40.3 bits (95), Expect = 0.001
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 8/56 (14%)
Query: 304 DNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSK--------DIVNASGIQL 351
D + LD+ + +I +LG +G+GKST + ++ G R K DI S +L
Sbjct: 25 DGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEEL 80
>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 237
Score = 78.7 bits (195), Expect = 1e-16
Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 11/98 (11%)
Query: 364 AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGK---- 419
A+ ++L++ + +I LLG NGAGK+T + + GL+ P SG DG DI G
Sbjct: 18 ALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDI---TGLPPHE 74
Query: 420 -VRESLGLCPQYDLLFEELTVEDHLQ---FFAKGKEFN 453
R + P+ +F LTVE++L + + KE
Sbjct: 75 RARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQ 112
Score = 44.4 bits (106), Expect = 4e-05
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 8/55 (14%)
Query: 44 IAGLIIPTSGTAYIDGHDIWYEMGK-----VRESLGLCPQYDLLFEELTVEDHLQ 93
I GL+ P SG DG DI G R + P+ +F LTVE++L
Sbjct: 49 IMGLVRPRSGRIIFDGEDI---TGLPPHERARLGIAYVPEGRRIFPRLTVEENLL 100
>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of
the nitrate and sulfonate transporters. NrtD and SsuB
are the ATP-binding subunits of the bacterial ABC-type
nitrate and sulfonate transport systems, respectively.
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 220
Score = 78.3 bits (194), Expect = 1e-16
Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 10/115 (8%)
Query: 349 IQLRGLTKIYKTG---KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGT 405
+++R ++K Y G A+++++L + + + L+G +G GKST + ++ GL PTSG
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 406 AYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRA 460
+DG + G Q D L LTV D++ G E G+ A
Sbjct: 61 VLVDGEPVT----GPGPDRGYVFQQDALLPWLTVLDNVAL---GLELQGVPKAEA 108
Score = 46.3 bits (111), Expect = 1e-05
Identities = 13/47 (27%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 292 LTKIYKTG---KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
++K Y G A+++++L + + + L+G +G GKST + ++ G
Sbjct: 6 VSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAG 52
Score = 35.9 bits (84), Expect = 0.026
Identities = 18/47 (38%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
Query: 44 IAGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVED 90
IAGL PTSG +DG + G Q D L LTV D
Sbjct: 50 IAGLERPTSGEVLVDGEPVT----GPGPDRGYVFQQDALLPWLTVLD 92
>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport
system involved in resistant to organic solvents. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 235
Score = 78.3 bits (194), Expect = 1e-16
Identities = 38/103 (36%), Positives = 62/103 (60%), Gaps = 7/103 (6%)
Query: 349 IQLRGLTKIYKTGKKAV-DNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAY 407
I+LRGLTK + G + V + LD+ + +I ++G +G+GKST + ++ GL+ P SG
Sbjct: 1 IELRGLTKSF--GGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVL 58
Query: 408 IDGHDIW----YEMGKVRESLGLCPQYDLLFEELTVEDHLQFF 446
IDG DI E+ ++R +G+ Q LF+ LTV +++ F
Sbjct: 59 IDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFP 101
Score = 44.0 bits (105), Expect = 7e-05
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 44 IAGLIIPTSGTAYIDGHDIW----YEMGKVRESLGLCPQYDLLFEELTVEDHLQFF 95
I GL+ P SG IDG DI E+ ++R +G+ Q LF+ LTV +++ F
Sbjct: 46 IVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFP 101
Score = 38.6 bits (91), Expect = 0.004
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 299 GKKAV-DNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSKDIVNASGIQLRGLTK 356
G + V + LD+ + +I ++G +G+GKST + ++ G R V G + GL++
Sbjct: 11 GGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSE 69
>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding
protein-dependent transport systems. This class is
comprised of all BPD (Binding Protein Dependent) systems
that are largely represented in archaea and eubacteria
and are primarily involved in scavenging solutes from
the environment. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 178
Score = 76.5 bits (189), Expect = 2e-16
Identities = 32/100 (32%), Positives = 58/100 (58%), Gaps = 4/100 (4%)
Query: 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYI 408
++L+ ++K Y K +++++L++ +I LLG +G+GKST + + GL P SG+ I
Sbjct: 1 LELKNVSKRYG-QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILI 59
Query: 409 DGHDI---WYEMGKVRESLGLCPQYDLLFEELTVEDHLQF 445
DG D+ E+ +R +G+ Q LF LTV +++
Sbjct: 60 DGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIAL 99
Score = 45.6 bits (109), Expect = 1e-05
Identities = 14/44 (31%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 292 LTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
++K Y K +++++L++ +I LLG +G+GKST + + G
Sbjct: 6 VSKRYG-QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAG 48
Score = 35.2 bits (82), Expect = 0.030
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 44 IAGLIIPTSGTAYIDGHDI---WYEMGKVRESLGLCPQYDLLFEELTVEDHLQF 94
IAGL P SG+ IDG D+ E+ +R +G+ Q LF LTV +++
Sbjct: 46 IAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIAL 99
>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 309
Score = 78.5 bits (194), Expect = 4e-16
Identities = 37/94 (39%), Positives = 56/94 (59%), Gaps = 2/94 (2%)
Query: 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYI 408
I+ ++K Y KKAVD++ L + + + VL+G +G+GK+TT+ M+ LI PTSG I
Sbjct: 2 IEFENVSKRY-GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILI 60
Query: 409 DGHDIW-YEMGKVRESLGLCPQYDLLFEELTVED 441
DG DI + ++R +G Q LF LTV +
Sbjct: 61 DGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAE 94
Score = 48.4 bits (116), Expect = 3e-06
Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 9/69 (13%)
Query: 292 LTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKS--------KDI 343
++K Y KKAVD++ L + + + VL+G +G+GK+TT+ M+ + +DI
Sbjct: 7 VSKRY-GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDI 65
Query: 344 VNASGIQLR 352
+ ++LR
Sbjct: 66 SDLDPVELR 74
Score = 34.2 bits (79), Expect = 0.14
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 44 IAGLIIPTSGTAYIDGHDIW-YEMGKVRESLGLCPQYDLLFEELTVED 90
I LI PTSG IDG DI + ++R +G Q LF LTV +
Sbjct: 47 INRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAE 94
>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component
of branched chain amino acids transport system. The
Mj1267/LivG ABC transporter subfamily is involved in the
transport of the hydrophobic amino acids leucine,
isoleucine and valine. MJ1267 is a branched-chain amino
acid transporter with 29% similarity to both the LivF
and LivG components of the E. coli branched-chain amino
acid transporter. MJ1267 contains an insertion from
residues 114 to 123 characteristic of LivG
(Leucine-Isoleucine-Valine) homologs. The branched-chain
amino acid transporter from E. coli comprises a
heterodimer of ABCs (LivF and LivG), a heterodimer of
six-helix TM domains (LivM and LivH), and one of two
alternative soluble periplasmic substrate binding
proteins (LivK or LivJ).
Length = 236
Score = 77.1 bits (191), Expect = 5e-16
Identities = 36/102 (35%), Positives = 58/102 (56%), Gaps = 17/102 (16%)
Query: 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYI 408
+++RGLTK + G A+D+++ + +I L+G NGAGK+T ++++G + PTSG+
Sbjct: 1 LEVRGLTKRFG-GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLF 59
Query: 409 DGHDIW----YEMGKVRESLGLC-----PQYDLLFEELTVED 441
DG DI +E LG+ P+ LF ELTV +
Sbjct: 60 DGEDITGLPPHE----IARLGIGRTFQIPR---LFPELTVLE 94
Score = 51.3 bits (124), Expect = 2e-07
Identities = 13/38 (34%), Positives = 26/38 (68%)
Query: 299 GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGY 336
G A+D+++ + +I L+G NGAGK+T ++++G+
Sbjct: 12 GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGF 49
Score = 30.1 bits (69), Expect = 2.1
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 16/56 (28%)
Query: 44 IAGLIIPTSGTAYIDGHDIW----YEMGKVRESLGLC-----PQYDLLFEELTVED 90
I+G + PTSG+ DG DI +E LG+ P+ LF ELTV +
Sbjct: 46 ISGFLRPTSGSVLFDGEDITGLPPHE----IARLGIGRTFQIPR---LFPELTVLE 94
>gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 77.0 bits (190), Expect = 9e-16
Identities = 43/106 (40%), Positives = 62/106 (58%), Gaps = 10/106 (9%)
Query: 349 IQLRGLTKIYKTG----KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSG 404
I++ LT IY G KKA+DN+ +++ + L+GH G+GKST + L GL+ PTSG
Sbjct: 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSG 62
Query: 405 TAYIDGHDIWYE---MGKVRESLGLCPQYD--LLFEELTVEDHLQF 445
IDG DI + + +R+ +GL QY LFEE T+E + F
Sbjct: 63 KIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEE-TIEKDIAF 107
Score = 40.4 bits (95), Expect = 0.001
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 6/56 (10%)
Query: 44 IAGLIIPTSGTAYIDGHDIWYE---MGKVRESLGLCPQYD--LLFEELTVEDHLQF 94
+ GL+ PTSG IDG DI + + +R+ +GL QY LFEE T+E + F
Sbjct: 53 LNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEE-TIEKDIAF 107
Score = 40.0 bits (94), Expect = 0.002
Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 4/48 (8%)
Query: 292 LTKIYKTG----KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
LT IY G KKA+DN+ +++ + L+GH G+GKST + L G
Sbjct: 8 LTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNG 55
>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the
transporters involved in export of lipoprotein and
macrolide, and cell division protein. This family is
comprised of MJ0796 ATP-binding cassette,
macrolide-specific ABC-type efflux carrier (MacAB), and
proteins involved in cell division (FtsE), and release
of lipoproteins from the cytoplasmic membrane (LolCDE).
They are clustered together phylogenetically. MacAB is
an exporter that confers resistance to macrolides, while
the LolCDE system is not a transporter at all. An FtsE
null mutants showed filamentous growth and appeared
viable on high salt medium only, indicating a role for
FtsE in cell division and/or salt transport. The LolCDE
complex catalyzes the release of lipoproteins from the
cytoplasmic membrane prior to their targeting to the
outer membrane.
Length = 218
Score = 75.2 bits (186), Expect = 1e-15
Identities = 32/103 (31%), Positives = 58/103 (56%), Gaps = 12/103 (11%)
Query: 349 IQLRGLTKIYKTGKK---AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGT 405
I+L+ L+K Y G + A+ ++L + + + ++G +G+GKST +++L GL PTSG
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE 60
Query: 406 AYIDGHDIWYEMGKV------RESLGLCPQ-YDLLFEELTVED 441
+DG DI ++ + R +G Q ++LL +LT +
Sbjct: 61 VRVDGTDI-SKLSEKELAAFRRRHIGFVFQSFNLL-PDLTALE 101
Score = 44.4 bits (106), Expect = 3e-05
Identities = 14/47 (29%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 292 LTKIYKTGKK---AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
L+K Y G + A+ ++L + + + ++G +G+GKST +++L G
Sbjct: 6 LSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGG 52
Score = 32.1 bits (74), Expect = 0.39
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 9/54 (16%)
Query: 44 IAGLIIPTSGTAYIDGHDIWYEMGKV------RESLGLCPQ-YDLLFEELTVED 90
+ GL PTSG +DG DI ++ + R +G Q ++LL +LT +
Sbjct: 50 LGGLDRPTSGEVRVDGTDI-SKLSEKELAAFRRRHIGFVFQSFNLL-PDLTALE 101
>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the
binding protein-dependent phosphonate transport system.
Phosphonates are a class of organophosphorus compounds
characterized by a chemically stable
carbon-to-phosphorus (C-P) bond. Phosphonates are
widespread among naturally occurring compounds in all
kingdoms of wildlife, but only prokaryotic
microorganisms are able to cleave this bond. Certain
bacteria such as E. coli can use alkylphosphonates as a
phosphorus source. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 241
Score = 75.3 bits (186), Expect = 2e-15
Identities = 29/65 (44%), Positives = 43/65 (66%)
Query: 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYI 408
I++ L+K Y GKKA+ +++L + + L+G +GAGKST + L GL+ PTSG+ I
Sbjct: 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLI 60
Query: 409 DGHDI 413
DG DI
Sbjct: 61 DGTDI 65
Score = 48.7 bits (117), Expect = 2e-06
Identities = 21/66 (31%), Positives = 33/66 (50%)
Query: 291 CLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSKDIVNASGIQ 350
L+K Y GKKA+ +++L + + L+G +GAGKST + L G + V G
Sbjct: 5 NLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTD 64
Query: 351 LRGLTK 356
+ L
Sbjct: 65 INKLKG 70
Score = 30.2 bits (69), Expect = 1.9
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 44 IAGLIIPTSGTAYIDGHDI 62
+ GL+ PTSG+ IDG DI
Sbjct: 47 LNGLVEPTSGSVLIDGTDI 65
>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport
systems, ATPase components [Inorganic ion transport and
metabolism / Coenzyme metabolism].
Length = 258
Score = 75.7 bits (187), Expect = 2e-15
Identities = 33/94 (35%), Positives = 50/94 (53%), Gaps = 2/94 (2%)
Query: 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYI 408
+++ L+ Y GK +D+L+ + + +IT +LG NG+GKST + L GL+ P SG +
Sbjct: 3 LEVENLSFGYG-GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLL 61
Query: 409 DGHDIWYEMGKVR-ESLGLCPQYDLLFEELTVED 441
DG DI K + L PQ LTV +
Sbjct: 62 DGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYE 95
Score = 47.9 bits (115), Expect = 4e-06
Identities = 17/46 (36%), Positives = 27/46 (58%)
Query: 299 GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSKDIV 344
GK +D+L+ + + +IT +LG NG+GKST + L G + V
Sbjct: 14 GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEV 59
Score = 36.4 bits (85), Expect = 0.023
Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 9/65 (13%)
Query: 44 IAGLIIPTSGTAYIDGHDIWYEMGKVR-ESLGLCPQYDLLFEELTVED--------HLQF 94
+AGL+ P SG +DG DI K + L PQ LTV + HL
Sbjct: 48 LAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGL 107
Query: 95 FAKWR 99
F +
Sbjct: 108 FGRPS 112
>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of
branched-chain amino acid transporter. LivF (TM1139) is
part of the LIV-I bacterial ABC-type two-component
transport system that imports neutral, branched-chain
amino acids. The E. coli branched-chain amino acid
transporter comprises a heterodimer of ABC transporters
(LivF and LivG), a heterodimer of six-helix TM domains
(LivM and LivH), and one of two alternative soluble
periplasmic substrate binding proteins (LivK or LivJ).
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules.
Length = 222
Score = 74.8 bits (185), Expect = 2e-15
Identities = 35/101 (34%), Positives = 56/101 (55%), Gaps = 9/101 (8%)
Query: 349 IQLRGLTKIYKTGK-KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAY 407
+++ L Y GK + + ++L + + +I LLG NGAGK+T + + GL+ P SG+
Sbjct: 1 LEVENLNAGY--GKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIR 58
Query: 408 IDGHDIW----YEMGKVRESLGLCPQYDLLFEELTVEDHLQ 444
DG DI +E R +G P+ +F ELTVE++L
Sbjct: 59 FDGRDITGLPPHER--ARAGIGYVPEGRRIFPELTVEENLL 97
Score = 40.9 bits (97), Expect = 5e-04
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 6/54 (11%)
Query: 44 IAGLIIPTSGTAYIDGHDIW----YEMGKVRESLGLCPQYDLLFEELTVEDHLQ 93
I GL+ P SG+ DG DI +E R +G P+ +F ELTVE++L
Sbjct: 46 IMGLLPPRSGSIRFDGRDITGLPPHER--ARAGIGYVPEGRRIFPELTVEENLL 97
>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 235
Score = 74.2 bits (183), Expect = 5e-15
Identities = 35/100 (35%), Positives = 58/100 (58%), Gaps = 3/100 (3%)
Query: 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYI 408
I+ L+ Y K A+ +++L++ + + +L+G NG+GKST + +L GL+ PTSG +
Sbjct: 4 IEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLV 63
Query: 409 DGHDIWYE--MGKVRESLGLCPQY-DLLFEELTVEDHLQF 445
DG D E + ++R+ +GL Q D TVED + F
Sbjct: 64 DGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAF 103
Score = 47.6 bits (114), Expect = 4e-06
Identities = 15/45 (33%), Positives = 29/45 (64%)
Query: 291 CLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
L+ Y K A+ +++L++ + + +L+G NG+GKST + +L G
Sbjct: 8 NLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNG 52
Score = 33.0 bits (76), Expect = 0.22
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 44 IAGLIIPTSGTAYIDGHDIWYE--MGKVRESLGLCPQY-DLLFEELTVEDHLQF 94
+ GL+ PTSG +DG D E + ++R+ +GL Q D TVED + F
Sbjct: 50 LNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAF 103
>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 352
Score = 75.8 bits (187), Expect = 5e-15
Identities = 31/97 (31%), Positives = 58/97 (59%), Gaps = 2/97 (2%)
Query: 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYI 408
+++R ++K + AVD+++LD+ + + LLG +G GK+T + M+ G P+SG +
Sbjct: 6 LEIRNVSKSF-GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILL 64
Query: 409 DGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQF 445
DG DI ++ + +G+ Q LF +TVE+++ F
Sbjct: 65 DGEDI-TDVPPEKRPIGMVFQSYALFPHMTVEENVAF 100
Score = 48.8 bits (117), Expect = 3e-06
Identities = 15/44 (34%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 292 LTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
++K + AVD+++LD+ + + LLG +G GK+T + M+ G
Sbjct: 11 VSKSF-GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAG 53
Score = 32.6 bits (75), Expect = 0.40
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 44 IAGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAKWR 99
IAG P+SG +DG DI ++ + +G+ Q LF +TVE+++ F K R
Sbjct: 51 IAGFEQPSSGEILLDGEDI-TDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVR 105
>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase
component [Amino acid transport and metabolism].
Length = 268
Score = 74.2 bits (183), Expect = 8e-15
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 8/73 (10%)
Query: 349 IQLRGLTKIYKTGK--------KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLII 400
++++ L K + GK KAVD ++ + + + L+G +G GKST ++ GL
Sbjct: 5 LEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEE 64
Query: 401 PTSGTAYIDGHDI 413
PTSG +G DI
Sbjct: 65 PTSGEILFEGKDI 77
Score = 48.0 bits (115), Expect = 4e-06
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 8/52 (15%)
Query: 292 LTKIYKTGK--------KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
L K + GK KAVD ++ + + + L+G +G GKST ++ G
Sbjct: 10 LKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILG 61
Score = 29.5 bits (67), Expect = 3.6
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 44 IAGLIIPTSGTAYIDGHDI 62
I GL PTSG +G DI
Sbjct: 59 ILGLEEPTSGEILFEGKDI 77
>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components
[Carbohydrate transport and metabolism].
Length = 338
Score = 75.0 bits (185), Expect = 9e-15
Identities = 29/99 (29%), Positives = 55/99 (55%), Gaps = 2/99 (2%)
Query: 347 SGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTA 406
+ ++L+ + K + + + ++ LD+ + VLLG +G GKST + M+ GL PTSG
Sbjct: 2 AELELKNVRKSFG-SFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEI 60
Query: 407 YIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQF 445
IDG D+ ++ + + + Q L+ +TV +++ F
Sbjct: 61 LIDGRDV-TDLPPEKRGIAMVFQNYALYPHMTVYENIAF 98
Score = 42.6 bits (101), Expect = 2e-04
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 292 LTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
+ K + + + ++ LD+ + VLLG +G GKST + M+ G
Sbjct: 9 VRKSFG-SFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAG 51
Score = 38.8 bits (91), Expect = 0.005
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 44 IAGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAKWR 99
IAGL PTSG IDG D+ ++ + + + Q L+ +TV +++ F K R
Sbjct: 49 IAGLEEPTSGEILIDGRDV-TDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLR 103
>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit,
PQQ-dependent alcohol dehydrogenase system. Members of
this protein family are the ATP-binding subunit of an
ABC transporter system that is associated with PQQ
biosynthesis and PQQ-dependent alcohol dehydrogenases.
While this family shows homology to several efflux ABC
transporter subunits, the presence of a periplasmic
substrate-binding protein and association with systems
for catabolism of alcohols suggests a role in import
rather than detoxification [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 236
Score = 73.1 bits (180), Expect = 9e-15
Identities = 32/101 (31%), Positives = 53/101 (52%), Gaps = 3/101 (2%)
Query: 348 GIQLRGLTKIYKTGKK-AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTA 406
+++ GL+ Y G + A+D+++ + + LLG NGAGKST S+LT L + G
Sbjct: 1 ALEVAGLSFRY--GARRALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQI 58
Query: 407 YIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFA 447
+ GHD+ LG+ Q L +L+V +L++ A
Sbjct: 59 SVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHA 99
Score = 48.1 bits (115), Expect = 3e-06
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 300 KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG-YKRKSKDI 343
++A+D+++ + + LLG NGAGKST S+LT Y + I
Sbjct: 14 RRALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQI 58
Score = 29.2 bits (66), Expect = 4.3
Identities = 13/53 (24%), Positives = 23/53 (43%)
Query: 44 IAGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFA 96
+ L + G + GHD+ LG+ Q L +L+V +L++ A
Sbjct: 47 LTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHA 99
>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport
system, ATPase component [Inorganic ion transport and
metabolism].
Length = 248
Score = 73.4 bits (181), Expect = 1e-14
Identities = 27/100 (27%), Positives = 52/100 (52%), Gaps = 5/100 (5%)
Query: 346 ASGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGT 405
+ +++ G++K + G + ++++ L + + + +LG +G GKST + ++ GL PTSG
Sbjct: 1 MALLEIEGVSKSF-GGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGE 59
Query: 406 AYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQF 445
+DG + +G Q D L LTV D++
Sbjct: 60 VLLDGRPV----TGPGPDIGYVFQEDALLPWLTVLDNVAL 95
Score = 45.2 bits (108), Expect = 2e-05
Identities = 14/62 (22%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 292 LTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSKDIVNASGIQL 351
++K + G + ++++ L + + + +LG +G GKST + ++ G ++ + V G +
Sbjct: 9 VSKSF-GGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPV 67
Query: 352 RG 353
G
Sbjct: 68 TG 69
Score = 35.2 bits (82), Expect = 0.054
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Query: 44 IAGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQF 94
IAGL PTSG +DG + +G Q D L LTV D++
Sbjct: 49 IAGLEKPTSGEVLLDGRPV----TGPGPDIGYVFQEDALLPWLTVLDNVAL 95
>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug
resistance protein-like transporters. The MRP
(Multidrug Resistance Protein)-like transporters are
involved in drug, peptide, and lipid export. They belong
to the subfamily C of the ATP-binding cassette (ABC)
superfamily of transport proteins. The ABCC subfamily
contains transporters with a diverse functional spectrum
that includes ion transport, cell surface receptor, and
toxin secretion activities. The MRP-like family, similar
to all ABC proteins, have a common four-domain core
structure constituted by two membrane-spanning domains,
each composed of six transmembrane (TM) helices, and two
nucleotide-binding domains (NBD). ABC transporters are a
subset of nucleotide hydrolases that contain a signature
motif, Q-loop, and H-loop/switch region, in addition to,
the Walker A motif/P-loop and Walker B motif commonly
found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 171
Score = 71.3 bits (176), Expect = 1e-14
Identities = 26/95 (27%), Positives = 51/95 (53%), Gaps = 3/95 (3%)
Query: 349 IQLRGLTKIYK-TGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAY 407
I+ + ++ Y K + +++L + + ++G +G+GKST + +L L PTSG
Sbjct: 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL 60
Query: 408 IDGHDIW-YEMGKVRESLGLCPQYDLLFEELTVED 441
IDG D+ ++ +R+++ PQ LF T+ +
Sbjct: 61 IDGVDLRDLDLESLRKNIAYVPQDPFLFSG-TIRE 94
Score = 40.1 bits (95), Expect = 7e-04
Identities = 9/39 (23%), Positives = 21/39 (53%)
Query: 298 TGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGY 336
K + +++L + + ++G +G+GKST + +L
Sbjct: 13 RPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRL 51
Score = 35.4 bits (83), Expect = 0.025
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 44 IAGLIIPTSGTAYIDGHDIW-YEMGKVRESLGLCPQYDLLFEELTVED 90
+ L PTSG IDG D+ ++ +R+++ PQ LF T+ +
Sbjct: 48 LLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSG-TIRE 94
>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 250
Score = 72.6 bits (179), Expect = 2e-14
Identities = 34/96 (35%), Positives = 55/96 (57%), Gaps = 3/96 (3%)
Query: 350 QLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYID 409
++RGL+K + G AV++++L++ +I L+G NGAGK+T +++TG P+SGT
Sbjct: 6 EVRGLSKRF-GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFR 64
Query: 410 GHDIWYEMGKVRESLGLCP--QYDLLFEELTVEDHL 443
G DI LG+ Q LF LTV +++
Sbjct: 65 GRDITGLPPHRIARLGIARTFQITRLFPGLTVLENV 100
Score = 48.3 bits (116), Expect = 3e-06
Identities = 15/37 (40%), Positives = 27/37 (72%)
Query: 299 GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
G AV++++L++ +I L+G NGAGK+T +++TG
Sbjct: 16 GLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITG 52
Score = 31.8 bits (73), Expect = 0.71
Identities = 25/86 (29%), Positives = 31/86 (36%), Gaps = 7/86 (8%)
Query: 44 IAGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCP--QYDLLFEELTVEDHLQFFAKWRIT 101
I G P+SGT G DI LG+ Q LF LTV +++ A R+
Sbjct: 50 ITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLG 109
Query: 102 YSSLLRNWTIAWSPYHPELFNVMSRA 127
S LL E RA
Sbjct: 110 LSGLL--GRPRARKEEREA---RERA 130
>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection
ABC transporter, ATP-binding subunit. Model TIGR03731
represents the family of all lantibiotics related to
gallidermin, including epidermin, mutatin, and nisin.
This protein family describes the ATP-binding subunit of
a gallidermin/epidermin class lantibiotic protection
transporter. It is largely restricted to
gallidermin-family lantibiotic biosynthesis and export
cassettes, but also occurs in orphan transporter
cassettes in species that lack candidate lantibiotic
precursor and synthetase genes.
Length = 223
Score = 72.0 bits (177), Expect = 2e-14
Identities = 35/96 (36%), Positives = 57/96 (59%), Gaps = 4/96 (4%)
Query: 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYI 408
++ + L+K + + AV+N++L + +N + LLG NGAGKST + M+TG++ PTSG
Sbjct: 1 LETKNLSKRFG-KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIF 59
Query: 409 DGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQ 444
DGH W K +G + L+E LT ++L+
Sbjct: 60 DGHP-WTR--KDLHKIGSLIESPPLYENLTARENLK 92
Score = 50.9 bits (122), Expect = 3e-07
Identities = 21/50 (42%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 292 LTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSK 341
L+K + + AV+N++L + +N + LLG NGAGKST + M+TG R +
Sbjct: 6 LSKRFG-KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTS 54
Score = 29.3 bits (66), Expect = 3.8
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 44 IAGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQ 93
I G++ PTSG DGH W K +G + L+E LT ++L+
Sbjct: 46 ITGILRPTSGEIIFDGHP-WTR--KDLHKIGSLIESPPLYENLTARENLK 92
>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose
transporter, MalK. ATP binding cassette (ABC) proteins
function from bacteria to human, mediating the
translocation of substances into and out of cells or
organelles. ABC transporters contain two
transmembrane-spanning domains (TMDs) or subunits and
two nucleotide binding domains (NBDs) or subunits that
couple transport to the hydrolysis of ATP. In the
maltose transport system, the periplasmic maltose
binding protein (MBP) stimulates the ATPase activity of
the membrane-associated transporter, which consists of
two transmembrane subunits, MalF and MalG, and two
copies of the ATP binding subunit, MalK, and becomes
tightly bound to the transporter in the catalytic
transition state, ensuring that maltose is passed to the
transporter as ATP is hydrolyzed.
Length = 213
Score = 70.7 bits (174), Expect = 4e-14
Identities = 36/97 (37%), Positives = 56/97 (57%), Gaps = 2/97 (2%)
Query: 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYI 408
++L +TK + A+D+L LD+ + VLLG +G GK+TT+ M+ GL PTSG YI
Sbjct: 1 VELENVTKRFG-NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYI 59
Query: 409 DGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQF 445
G D+ K R+ + + Q L+ +TV D++ F
Sbjct: 60 GGRDVTDLPPKDRD-IAMVFQNYALYPHMTVYDNIAF 95
Score = 44.9 bits (107), Expect = 3e-05
Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 292 LTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
+TK + A+D+L LD+ + VLLG +G GK+TT+ M+ G
Sbjct: 6 VTKRFG-NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAG 48
Score = 31.5 bits (72), Expect = 0.64
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 44 IAGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAKWRIT 101
IAGL PTSG YI G D+ K R+ + + Q L+ +TV D++ F K R
Sbjct: 46 IAGLEEPTSGRIYIGGRDVTDLPPKDRD-IAMVFQNYALYPHMTVYDNIAFGLKLRKV 102
>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system,
ATPase component [Inorganic ion transport and
metabolism].
Length = 258
Score = 71.9 bits (177), Expect = 4e-14
Identities = 32/95 (33%), Positives = 55/95 (57%), Gaps = 4/95 (4%)
Query: 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYI 408
I+++ L+K Y G +A+ ++ L++ Q ++ ++G +GAGKST + L GL+ PTSG
Sbjct: 4 IEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILF 63
Query: 409 DGHDIW----YEMGKVRESLGLCPQYDLLFEELTV 439
+G I E+ K+R +G+ Q L L+V
Sbjct: 64 NGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSV 98
Score = 48.8 bits (117), Expect = 2e-06
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 8/70 (11%)
Query: 291 CLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKS--------KD 342
L+K Y G +A+ ++ L++ Q ++ ++G +GAGKST + L G +
Sbjct: 8 NLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQ 67
Query: 343 IVNASGIQLR 352
I G +LR
Sbjct: 68 ITKLKGKELR 77
Score = 29.5 bits (67), Expect = 3.8
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 44 IAGLIIPTSGTAYIDGHDIW----YEMGKVRESLGLCPQYDLLFEELTV 88
+ GL+ PTSG +G I E+ K+R +G+ Q L L+V
Sbjct: 50 LNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSV 98
>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding
cassette component of cobalt transport system. Domain I
of the ABC component of a cobalt transport family found
in bacteria, archaea, and eukaryota. The transition
metal cobalt is an essential component of many enzymes
and must be transported into cells in appropriate
amounts when needed. This ABC transport system of the
CbiMNQO family is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most of cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 211
Score = 70.6 bits (174), Expect = 5e-14
Identities = 33/99 (33%), Positives = 58/99 (58%), Gaps = 3/99 (3%)
Query: 350 QLRGLTKIYKTGKKAV-DNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYI 408
+L+ L+ Y G + D+++L + + + +++G NG+GKST + +L GL+ PTSG +
Sbjct: 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLV 60
Query: 409 DGHDIWYE-MGKVRESLGLCPQY-DLLFEELTVEDHLQF 445
DG D+ + ++R +GL Q D F TVE+ + F
Sbjct: 61 DGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAF 99
Score = 50.9 bits (123), Expect = 2e-07
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 292 LTKIYKTGKKAV-DNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSKDIVNASGIQ 350
L+ Y G + D+++L + + + +++G NG+GKST + +L G + V G
Sbjct: 5 LSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKD 64
Query: 351 LRGLT 355
L L+
Sbjct: 65 LTKLS 69
Score = 29.4 bits (67), Expect = 3.4
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 44 IAGLIIPTSGTAYIDGHDIWYE-MGKVRESLGLCPQY-DLLFEELTVEDHLQF 94
+ GL+ PTSG +DG D+ + ++R +GL Q D F TVE+ + F
Sbjct: 47 LNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAF 99
>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems,
ATPase components [General function prediction only].
Length = 501
Score = 73.7 bits (182), Expect = 5e-14
Identities = 28/63 (44%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
Query: 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAY 407
+++RG+TK + G A D+++L + + +I LLG NGAGKST M +L GL P SG
Sbjct: 4 ALEMRGITKRF-PGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIR 62
Query: 408 IDG 410
+DG
Sbjct: 63 VDG 65
Score = 52.2 bits (126), Expect = 4e-07
Identities = 20/45 (44%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 292 LTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGY 336
+TK + G A D+++L + + +I LLG NGAGKST M +L G
Sbjct: 10 ITKRF-PGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGL 53
Score = 31.7 bits (73), Expect = 0.87
Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Query: 338 RKSKDIVNASGIQL--RGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSML 395
R K + L L+ + G AV +++ ++ +I + G G G+S + +
Sbjct: 245 RVVKPPSTPGEVVLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAI 304
Query: 396 TGLIIPTSGTAYIDGHDI 413
+GL P SG ++G D+
Sbjct: 305 SGLRKPASGRILLNGKDV 322
>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the
cell division transporter. FtsE is a hydrophilic
nucleotide-binding protein that binds FtsX to form a
heterodimeric ATP-binding cassette (ABC)-type
transporter that associates with the bacterial inner
membrane. The FtsE/X transporter is thought to be
involved in cell division and is important for assembly
or stability of the septal ring.
Length = 214
Score = 69.4 bits (170), Expect = 1e-13
Identities = 29/101 (28%), Positives = 53/101 (52%), Gaps = 4/101 (3%)
Query: 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYI 408
I+ +TK Y G A+D + + + + L+G +GAGKST + ++ +PTSGT +
Sbjct: 1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRV 60
Query: 409 DGHDIWYEMGK----VRESLGLCPQYDLLFEELTVEDHLQF 445
+G D+ G+ +R +G+ Q L + V +++ F
Sbjct: 61 NGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAF 101
Score = 47.4 bits (113), Expect = 4e-06
Identities = 16/64 (25%), Positives = 31/64 (48%)
Query: 293 TKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSKDIVNASGIQLR 352
TK Y G A+D + + + + L+G +GAGKST + ++ + + + +G +
Sbjct: 7 TKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVS 66
Query: 353 GLTK 356
L
Sbjct: 67 DLRG 70
Score = 30.1 bits (68), Expect = 1.9
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 44 IAGLIIPTSGTAYIDGHDIWYEMGK----VRESLGLCPQYDLLFEELTVEDHLQF 94
I +PTSGT ++G D+ G+ +R +G+ Q L + V +++ F
Sbjct: 47 IYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAF 101
>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component
[Carbohydrate transport and metabolism].
Length = 500
Score = 71.8 bits (177), Expect = 2e-13
Identities = 28/62 (45%), Positives = 42/62 (67%), Gaps = 1/62 (1%)
Query: 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYI 408
++LRG++K + G KA+D ++L + ++ LLG NGAGKST M +L+G+ P SG I
Sbjct: 9 LELRGISKSFG-GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILI 67
Query: 409 DG 410
DG
Sbjct: 68 DG 69
Score = 52.5 bits (127), Expect = 3e-07
Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 292 LTKIYKT--GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG-YKRKSKDI 343
L I K+ G KA+D ++L + ++ LLG NGAGKST M +L+G Y S +I
Sbjct: 11 LRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEI 65
>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein;
Provisional.
Length = 510
Score = 71.4 bits (175), Expect = 3e-13
Identities = 35/97 (36%), Positives = 53/97 (54%), Gaps = 3/97 (3%)
Query: 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYI 408
I + G+ K + A+ ++ L +Y +I LLG NGAGKST M +L+G+ PT GT I
Sbjct: 6 ISMAGIGKSF-GPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITI 64
Query: 409 DGHDIWYEMGKVRESLGLCPQYDLL--FEELTVEDHL 443
+ + K+ LG+ Y L +ELTV ++L
Sbjct: 65 NNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENL 101
Score = 53.2 bits (128), Expect = 2e-07
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 292 LTKIYKT--GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSKDIVNASGI 349
+ I K+ A+ ++ L +Y +I LLG NGAGKST M +L+G +K + + I
Sbjct: 8 MAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNI 67
Query: 350 QLRGLT 355
L
Sbjct: 68 NYNKLD 73
>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional.
Length = 306
Score = 69.8 bits (171), Expect = 3e-13
Identities = 35/107 (32%), Positives = 57/107 (53%), Gaps = 1/107 (0%)
Query: 342 DIVNASGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIP 401
++ + I R + K Y K VD L+ + + + LLG NGAGK+TT+ ML GL P
Sbjct: 1 GPMSVAPIDFRNVEKRYGD-KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHP 59
Query: 402 TSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAK 448
+G+ + G + R+ +G+ PQ+D L + TV ++L F +
Sbjct: 60 DAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGR 106
Score = 40.6 bits (95), Expect = 0.001
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 300 KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
K VD L+ + + + LLG NGAGK+TT+ ML G
Sbjct: 20 KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLG 55
Score = 32.5 bits (74), Expect = 0.46
Identities = 15/53 (28%), Positives = 28/53 (52%)
Query: 46 GLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAKW 98
GL P +G+ + G + R+ +G+ PQ+D L + TV ++L F ++
Sbjct: 55 GLTHPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRY 107
>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 69.6 bits (171), Expect = 3e-13
Identities = 35/100 (35%), Positives = 58/100 (58%), Gaps = 3/100 (3%)
Query: 349 IQLRGLTKIYKTGKK-AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAY 407
I++ ++ Y + A+ N++ ++ + + +LGHNG+GKST +LTGL+ P SG
Sbjct: 8 IKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIK 67
Query: 408 IDGHDIWYE-MGKVRESLGLCPQY-DLLFEELTVEDHLQF 445
IDG I E + ++R+ +G+ Q D F TVED + F
Sbjct: 68 IDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAF 107
Score = 45.4 bits (108), Expect = 2e-05
Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 296 YKTGKK-AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG-YKRKSKDI 343
Y + A+ N++ ++ + + +LGHNG+GKST +LTG K +S +I
Sbjct: 17 YPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEI 66
Score = 30.7 bits (70), Expect = 1.6
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 44 IAGLIIPTSGTAYIDGHDIWYE-MGKVRESLGLCPQY-DLLFEELTVEDHLQF 94
+ GL+ P SG IDG I E + ++R+ +G+ Q D F TVED + F
Sbjct: 55 LTGLLKPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAF 107
>gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding
protein UrtD. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 242
Score = 69.1 bits (170), Expect = 3e-13
Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 361 GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDI--WYEMG 418
G KA+++L+L + ++ V++G NGAGK+T M ++TG P G+ G D+ E
Sbjct: 14 GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQ 73
Query: 419 KVRESLGLCPQYDLLFEELTVEDHL 443
R +G Q +FE LTV ++L
Sbjct: 74 IARAGIGRKFQKPTVFENLTVFENL 98
Score = 50.6 bits (122), Expect = 4e-07
Identities = 22/57 (38%), Positives = 35/57 (61%)
Query: 299 GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSKDIVNASGIQLRGLT 355
G KA+++L+L + ++ V++G NGAGK+T M ++TG R + V G L GL
Sbjct: 14 GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLP 70
Score = 29.8 bits (68), Expect = 2.5
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 42 DDIAGLIIPTSGTAYIDGHDI--WYEMGKVRESLGLCPQYDLLFEELTVEDHL 92
D I G P G+ G D+ E R +G Q +FE LTV ++L
Sbjct: 46 DVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVFENL 98
>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 226
Score = 68.3 bits (168), Expect = 3e-13
Identities = 33/101 (32%), Positives = 59/101 (58%), Gaps = 8/101 (7%)
Query: 349 IQLRGLTKIYKTGKK---AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGT 405
I+L+ ++KIY G + A+ ++ L++ + ++G +G+GKST +++L GL PTSG
Sbjct: 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGE 61
Query: 406 AYIDGHDIWY----EMGKVR-ESLGLCPQYDLLFEELTVED 441
I+G D+ E+ K+R + +G Q L +LTV +
Sbjct: 62 VLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLE 102
Score = 38.3 bits (90), Expect = 0.004
Identities = 15/56 (26%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 292 LTKIYKTGKK---AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSKDIV 344
++KIY G + A+ ++ L++ + ++G +G+GKST +++L G + + V
Sbjct: 7 VSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEV 62
Score = 33.3 bits (77), Expect = 0.20
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Query: 43 DIAGLIIPTSGTAYIDGHDIWY----EMGKVR-ESLGLCPQYDLLFEELTVED 90
+ GL PTSG I+G D+ E+ K+R + +G Q L +LTV +
Sbjct: 50 LLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLE 102
>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of
nickel/oligopeptides specific transporters. The ABC
transporter subfamily specific for the transport of
dipeptides, oligopeptides (OppD), and nickel (NikDE).
The NikABCDE system of E. coli belongs to this family
and is composed of the periplasmic binding protein NikA,
two integral membrane components (NikB and NikC), and
two ATPase (NikD and NikE). The NikABCDE transporter is
synthesized under anaerobic conditions to meet the
increased demand for nickel resulting from hydrogenase
synthesis. The molecular mechanism of nickel uptake in
many bacteria and most archaea is not known. Many other
members of this ABC family are also involved in the
uptake of dipeptides and oligopeptides. The oligopeptide
transport system (Opp) is a five-component ABC transport
composed of a membrane-anchored substrate binding
proteins (SRP), OppA, two transmembrane proteins, OppB
and OppC, and two ATP-binding domains, OppD and OppF.
Length = 228
Score = 68.3 bits (168), Expect = 4e-13
Identities = 23/80 (28%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Query: 349 IQLRGLTKIYKTGK---KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGT 405
++++ L+ + TG KA+D+++ + + + L+G +G+GKST + GL+ PTSG+
Sbjct: 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGS 61
Query: 406 AYIDGHDIWYEMGKVRESLG 425
DG D+ ++R+
Sbjct: 62 IIFDGKDLLKLSRRLRKIRR 81
Score = 44.0 bits (105), Expect = 6e-05
Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 11/72 (15%)
Query: 292 LTKIYKTGK---KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKS-------- 340
L+ + TG KA+D+++ + + + L+G +G+GKST + G + +
Sbjct: 7 LSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDG 66
Query: 341 KDIVNASGIQLR 352
KD++ S +
Sbjct: 67 KDLLKLSRRLRK 78
Score = 29.4 bits (67), Expect = 3.8
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 44 IAGLIIPTSGTAYIDGHDIWYEMGKVRESLG 74
I GL+ PTSG+ DG D+ ++R+
Sbjct: 51 ILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81
>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of
iron-siderophores, vitamin B12 and hemin transporters
and related proteins. ABC transporters, involved in the
uptake of siderophores, heme, and vitamin B12, are
widely conserved in bacteria and archaea. Only very few
species lack representatives of the siderophore family
transporters. The E. coli BtuCD protein is an ABC
transporter mediating vitamin B12 uptake. The two
ATP-binding cassettes (BtuD) are in close contact with
each other, as are the two membrane-spanning subunits
(BtuC); this arrangement is distinct from that observed
for the E. coli lipid flippase MsbA. The BtuC subunits
provide 20 transmembrane helices grouped around a
translocation pathway that is closed to the cytoplasm by
a gate region, whereas the dimer arrangement of the BtuD
subunits resembles the ATP-bound form of the Rad50 DNA
repair enzyme. A prominent cytoplasmic loop of BtuC
forms the contact region with the ATP-binding cassette
and represent a conserved motif among the ABC
transporters.
Length = 180
Score = 67.1 bits (165), Expect = 5e-13
Identities = 25/65 (38%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 350 QLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYID 409
++ L+ Y G+ +D+L+L + +I +LG NGAGKST + L GL+ P+SG +D
Sbjct: 1 EVENLSVGYG-GRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLD 59
Query: 410 GHDIW 414
G D+
Sbjct: 60 GKDLA 64
Score = 48.6 bits (117), Expect = 1e-06
Identities = 17/43 (39%), Positives = 26/43 (60%)
Query: 299 GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSK 341
G+ +D+L+L + +I +LG NGAGKST + L G + S
Sbjct: 11 GRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSS 53
>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette
domain of the phosphate transport system. Phosphate
uptake is of fundamental importance in the cell
physiology of bacteria because phosphate is required as
a nutrient. The Pst system of E. coli comprises four
distinct subunits encoded by the pstS, pstA, pstB, and
pstC genes. The PstS protein is a phosphate-binding
protein located in the periplasmic space. PstA and PstC
are hydrophobic and they form the transmembrane portion
of the Pst system. PstB is the catalytic subunit, which
couples the energy of ATP hydrolysis to the import of
phosphate across cellular membranes through the Pst
system, often referred as ABC-protein. PstB belongs to
one of the largest superfamilies of proteins
characterized by a highly conserved adenosine
triphosphate (ATP) binding cassette (ABC), which is also
a nucleotide binding domain (NBD).
Length = 227
Score = 67.2 bits (165), Expect = 9e-13
Identities = 31/101 (30%), Positives = 53/101 (52%), Gaps = 10/101 (9%)
Query: 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLI-----IPTS 403
I+LR L Y K A+ +++LD+ + +IT L+G +G GKST + +L L P
Sbjct: 1 IELRDLNVYYG-DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDE 59
Query: 404 GTAYIDGHDIW---YEMGKVRESLGLCPQYDLLFEELTVED 441
G +DG DI+ ++ ++R +G+ Q F ++ D
Sbjct: 60 GEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPF-PGSIYD 99
Score = 43.7 bits (104), Expect = 7e-05
Identities = 15/39 (38%), Positives = 27/39 (69%)
Query: 295 IYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSML 333
+Y K A+ +++LD+ + +IT L+G +G GKST + +L
Sbjct: 8 VYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLL 46
>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell
division and chromosome partitioning].
Length = 223
Score = 66.5 bits (163), Expect = 1e-12
Identities = 27/101 (26%), Positives = 54/101 (53%), Gaps = 4/101 (3%)
Query: 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYI 408
I+ ++K Y G++A+ +++ + + + L G +GAGKST + ++ G PT G +
Sbjct: 2 IRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILV 61
Query: 409 DGHDIW----YEMGKVRESLGLCPQYDLLFEELTVEDHLQF 445
+GHD+ E+ +R +G+ Q L + TV +++
Sbjct: 62 NGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVAL 102
Score = 45.3 bits (108), Expect = 2e-05
Identities = 16/59 (27%), Positives = 35/59 (59%)
Query: 293 TKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSKDIVNASGIQL 351
+K Y G++A+ +++ + + + L G +GAGKST + ++ G +R ++ + +G L
Sbjct: 8 SKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDL 66
>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding
subunit. This model describes the glycine
betaine/L-proline ATP binding subunit in bacteria and
its equivalents in archaea. This transport system belong
to the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Functionally, this transport system is involved
in osmoregulation. Under conditions of stress, the
organism recruits these transport system to accumulate
glycine betaine and other solutes which offer
osmo-protection. It has been demonstrated that glycine
betaine uptake is accompanied by symport with sodium
ions. The locus has been named variously as proU or
opuA. A gene library from L.lactis functionally
complements an E.coli proU mutant. The comlementing
locus is similar to a opuA locus in B.sutlis. This
clarifies the differences in nomenclature [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 363
Score = 68.0 bits (166), Expect = 2e-12
Identities = 32/91 (35%), Positives = 52/91 (57%), Gaps = 7/91 (7%)
Query: 361 GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKV 420
GKK V++ L + + +I V++G +G+GKSTT+ ML LI PT+G +IDG +I + V
Sbjct: 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENI-MKQSPV 63
Query: 421 ------RESLGLCPQYDLLFEELTVEDHLQF 445
R+ +G+ Q LF +T+ +
Sbjct: 64 ELREVRRKKIGMVFQQFALFPHMTILQNTSL 94
Score = 42.5 bits (100), Expect = 3e-04
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 8/62 (12%)
Query: 299 GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSK--------DIVNASGIQ 350
GKK V++ L + + +I V++G +G+GKSTT+ ML + +I+ S ++
Sbjct: 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVE 64
Query: 351 LR 352
LR
Sbjct: 65 LR 66
Score = 32.1 bits (73), Expect = 0.61
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 10/61 (16%)
Query: 47 LIIPTSGTAYIDGHDIWYEMGKV------RESLGLCPQYDLLFEELTVEDHLQF---FAK 97
LI PT+G +IDG +I + V R+ +G+ Q LF +T+ +
Sbjct: 42 LIEPTAGQIFIDGENI-MKQSPVELREVRRKKIGMVFQQFALFPHMTILQNTSLGPELLG 100
Query: 98 W 98
W
Sbjct: 101 W 101
>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit;
Provisional.
Length = 377
Score = 67.9 bits (166), Expect = 2e-12
Identities = 35/97 (36%), Positives = 58/97 (59%), Gaps = 2/97 (2%)
Query: 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYI 408
+++R LTK + G+ AVD+++L +Y+ +I LLG +G GKST + ML G PT+G +
Sbjct: 20 LEIRNLTKSFD-GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIML 78
Query: 409 DGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQF 445
DG D+ + + + + Q LF +TVE ++ F
Sbjct: 79 DGVDL-SHVPPYQRPINMMFQSYALFPHMTVEQNIAF 114
Score = 48.7 bits (116), Expect = 4e-06
Identities = 23/60 (38%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 292 LTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSKDIVNASGIQL 351
LTK + G+ AVD+++L +Y+ +I LLG +G GKST + ML G+++ + + G+ L
Sbjct: 25 LTKSFD-GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDL 83
>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 263
Score = 66.6 bits (163), Expect = 3e-12
Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 349 IQLRGLTKIYKTG----KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSG 404
I L TK + G K+A++ L+L++ + ++G NGAGKST ++ + G + PTSG
Sbjct: 2 ISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSG 61
Query: 405 TAYIDGHDI 413
IDG D+
Sbjct: 62 QILIDGVDV 70
Score = 47.7 bits (114), Expect = 4e-06
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Query: 292 LTKIYKTG----KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGY 336
TK + G K+A++ L+L++ + ++G NGAGKST ++ + G
Sbjct: 7 ATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGD 55
>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette
domain of methionine transporter. MetN (also known as
YusC) is an ABC-type transporter encoded by metN of the
metNPQ operon in Bacillus subtilis that is involved in
methionine transport. Other members of this system
include the MetP permease and the MetQ substrate binding
protein. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 233
Score = 65.7 bits (161), Expect = 3e-12
Identities = 30/98 (30%), Positives = 55/98 (56%), Gaps = 7/98 (7%)
Query: 349 IQLRGLTKIYKTGKK---AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGT 405
I+L+ ++K++ A+ +++L + + +I ++G +GAGKST + + GL PTSG+
Sbjct: 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGS 61
Query: 406 AYIDGHDIW----YEMGKVRESLGLCPQYDLLFEELTV 439
+DG D+ E+ K R +G+ Q+ L TV
Sbjct: 62 VLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTV 99
Score = 46.0 bits (110), Expect = 1e-05
Identities = 18/72 (25%), Positives = 38/72 (52%), Gaps = 11/72 (15%)
Query: 292 LTKIYKTGKK---AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKS-------- 340
++K++ A+ +++L + + +I ++G +GAGKST + + G +R +
Sbjct: 7 VSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDG 66
Query: 341 KDIVNASGIQLR 352
D+ SG +LR
Sbjct: 67 TDLTLLSGKELR 78
>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 339
Score = 66.9 bits (164), Expect = 4e-12
Identities = 30/105 (28%), Positives = 63/105 (60%), Gaps = 8/105 (7%)
Query: 349 IQLRGLTKIYKTGKK----AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSG 404
I+L ++K + A+D+++L++ + +I ++G++GAGKST + ++ L PTSG
Sbjct: 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSG 61
Query: 405 TAYIDGHDIW----YEMGKVRESLGLCPQYDLLFEELTVEDHLQF 445
+ ++DG D+ E+ ++R+ +G+ Q+ L TV +++ F
Sbjct: 62 SVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAF 106
Score = 40.7 bits (96), Expect = 0.001
Identities = 17/73 (23%), Positives = 40/73 (54%), Gaps = 12/73 (16%)
Query: 292 LTKIYKTGKK----AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKS------- 340
++K + A+D+++L++ + +I ++G++GAGKST + ++ +R +
Sbjct: 7 VSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVD 66
Query: 341 -KDIVNASGIQLR 352
+D+ S +LR
Sbjct: 67 GQDLTALSEAELR 79
Score = 28.4 bits (64), Expect = 8.2
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 44 IAGLIIPTSGTAYIDGHDIW----YEMGKVRESLGLCPQYDLLFEELTVEDHLQF 94
I L PTSG+ ++DG D+ E+ ++R+ +G+ Q+ L TV +++ F
Sbjct: 52 INLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAF 106
>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter
subfamily G of the ATP-binding cassette superfamily.
ABCG transporters are involved in eye pigment (EP)
precursor transport, regulation of lipid-trafficking
mechanisms, and pleiotropic drug resistance (DR). DR is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. Compared to other members of the
ABC transporter subfamilies, the ABCG transporter family
is composed of proteins that have an ATP-binding
cassette domain at the N-terminus and a TM
(transmembrane) domain at the C-terminus.
Length = 194
Score = 64.5 bits (158), Expect = 4e-12
Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 4/92 (4%)
Query: 359 KTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIP--TSGTAYIDGHDIWYE 416
K+GK+ + N++ ++T ++G +GAGKST ++ L G SG I+G + +
Sbjct: 19 KSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPL--D 76
Query: 417 MGKVRESLGLCPQYDLLFEELTVEDHLQFFAK 448
R+ +G PQ D+L LTV + L F AK
Sbjct: 77 KRSFRKIIGYVPQDDILHPTLTVRETLMFAAK 108
Score = 39.8 bits (94), Expect = 0.001
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 44 IAGLIIP--TSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAKWR 99
+AG SG I+G + + R+ +G PQ D+L LTV + L F AK R
Sbjct: 55 LAGRRTGLGVSGEVLINGRPL--DKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR 110
Score = 36.8 bits (86), Expect = 0.012
Identities = 14/41 (34%), Positives = 27/41 (65%)
Query: 297 KTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYK 337
K+GK+ + N++ ++T ++G +GAGKST ++ L G +
Sbjct: 19 KSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRR 59
>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an
uncharacterized transporter similar in sequence to NatA.
NatA is the ATPase component of a bacterial ABC-type
Na+ transport system called NatAB, which catalyzes
ATP-dependent electrogenic Na+ extrusion without
mechanically coupled to proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of the single ATP-binding
protein and the single integral membrane protein.
Length = 236
Score = 65.0 bits (159), Expect = 6e-12
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 20/98 (20%)
Query: 349 IQLRGLTKIYKTGKK--------------------AVDNLTLDMYQNQITVLLGHNGAGK 388
I++ L+K Y+ K A+ ++ + + +I +G NGAGK
Sbjct: 1 IEVSNLSKSYRVYSKEPGLIGSLKSLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGK 60
Query: 389 STTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGL 426
+TT+ +L+GL+ PTSG + G W K +G+
Sbjct: 61 TTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGV 98
Score = 45.0 bits (107), Expect = 3e-05
Identities = 12/36 (33%), Positives = 24/36 (66%)
Query: 300 KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
+A+ ++ + + +I +G NGAGK+TT+ +L+G
Sbjct: 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSG 69
>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component
[Inorganic ion transport and metabolism].
Length = 254
Score = 64.9 bits (159), Expect = 8e-12
Identities = 32/96 (33%), Positives = 54/96 (56%), Gaps = 7/96 (7%)
Query: 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYI 408
I++ LT Y + +++++L + + +IT L+G NGAGKST + + GL+ P+SG I
Sbjct: 5 IEVENLTVSY-GNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKI 63
Query: 409 DGHDIWYEMGKVRESLGLCPQ---YDLLFEELTVED 441
G + ++R +G PQ D F +TV+D
Sbjct: 64 FGKPVRKRRKRLR--IGYVPQKSSVDRSF-PITVKD 96
Score = 40.7 bits (96), Expect = 0.001
Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 292 LTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
LT Y + +++++L + + +IT L+G NGAGKST + + G
Sbjct: 10 LTVSY-GNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILG 52
>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of
bacteriocin exporters, subfamily C. Many
non-lantibiotic bacteriocins of lactic acid bacteria are
produced as precursors which have N-terminal leader
peptides that share similarities in amino acid sequence
and contain a conserved processing site of two glycine
residues in positions -1 and -2. A dedicated ATP-binding
cassette (ABC) transporter is responsible for the
proteolytic cleavage of the leader peptides and
subsequent translocation of the bacteriocins across the
cytoplasmic membrane.
Length = 220
Score = 64.1 bits (157), Expect = 8e-12
Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Query: 349 IQLRGLTKIYK-TGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAY 407
I+ R ++ Y A+DN++L + + ++G G+GKST + +L GL PTSG+
Sbjct: 3 IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVL 62
Query: 408 IDGHDIW-YEMGKVRESLGLCPQYDLLF 434
+DG DI + +R ++G PQ LF
Sbjct: 63 LDGTDIRQLDPADLRRNIGYVPQDVTLF 90
Score = 39.9 bits (94), Expect = 0.001
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 44 IAGLIIPTSGTAYIDGHDIW-YEMGKVRESLGLCPQYDLLF 83
+AGL PTSG+ +DG DI + +R ++G PQ LF
Sbjct: 50 LAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLF 90
Score = 32.2 bits (74), Expect = 0.41
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 300 KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
A+DN++L + + ++G G+GKST + +L G
Sbjct: 17 IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAG 52
>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding
protein. This model represents LolD, a member of the
ABC transporter family (pfam00005). LolD is involved in
localization of lipoproteins in some bacteria. It works
with a transmembrane protein LolC, which in some species
is a paralogous pair LolC and LolE. Depending on whether
the residue immediately following the new, modified
N-terminal Cys residue, the nascent lipoprotein may be
carried further by LolA and LolB to the outer membrane,
or remain at the inner membrane. The top scoring
proteins excluded by this model include homologs from
the archaeal genus Methanosarcina [Protein fate, Protein
and peptide secretion and trafficking].
Length = 221
Score = 64.3 bits (157), Expect = 9e-12
Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 8/99 (8%)
Query: 349 IQLRGLTKIYKTGKKAVD---NLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGT 405
++ L K Y+ GK ++L + + +I ++G +G+GKST + +L GL PTSG
Sbjct: 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGE 61
Query: 406 AYIDGHDIWY----EMGKVR-ESLGLCPQYDLLFEELTV 439
+G + E K+R + LG Q+ L + T
Sbjct: 62 VLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTA 100
Score = 40.4 bits (95), Expect = 8e-04
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 292 LTKIYKTGKKAVD---NLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
L K Y+ GK ++L + + +I ++G +G+GKST + +L G
Sbjct: 7 LGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGG 53
>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the
osmoprotectant proline/glycine betaine uptake system.
This family comprises the glycine betaine/L-proline ATP
binding subunit in bacteria and its equivalents in
archaea. This transport system belong to the larger
ATP-Binding Cassette (ABC) transporter superfamily. The
characteristic feature of these transporters is the
obligatory coupling of ATP hydrolysis to substrate
translocation. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 269
Score = 65.0 bits (159), Expect = 1e-11
Identities = 34/116 (29%), Positives = 55/116 (47%), Gaps = 35/116 (30%)
Query: 349 IQLRGLTKIY----------------------KTGKK-AVDNLTLDMYQNQITVLLGHNG 385
I+++GL KI+ KTG+ V++++LD+ + +I V++G +G
Sbjct: 1 IKIKGLYKIFGKNPQKAFKLLAKGKSKEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSG 60
Query: 386 AGKSTTMSMLTGLIIPTSGTAYIDGHDIW------------YEMGKVRESLGLCPQ 429
+GKST + + LI PTSG IDG DI ++ V +S L P
Sbjct: 61 SGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPH 116
Score = 36.1 bits (84), Expect = 0.032
Identities = 14/40 (35%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 297 KTGKK-AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
KTG+ V++++LD+ + +I V++G +G+GKST + +
Sbjct: 33 KTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINR 72
Score = 32.2 bits (74), Expect = 0.45
Identities = 16/47 (34%), Positives = 19/47 (40%), Gaps = 12/47 (25%)
Query: 44 IAGLIIPTSGTAYIDGHDIW------------YEMGKVRESLGLCPQ 78
I LI PTSG IDG DI ++ V +S L P
Sbjct: 70 INRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPH 116
>gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 252
Score = 63.9 bits (156), Expect = 2e-11
Identities = 33/98 (33%), Positives = 57/98 (58%), Gaps = 2/98 (2%)
Query: 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYI 408
I + ++K Y T K +D+++LD+ + IT ++G NGAGKST +SM++ L+ SG I
Sbjct: 2 ITIENVSKSYGT-KVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITI 60
Query: 409 DGHDIW-YEMGKVRESLGLCPQYDLLFEELTVEDHLQF 445
DG ++ ++ + L + Q + + LTV D + F
Sbjct: 61 DGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGF 98
Score = 42.7 bits (101), Expect = 2e-04
Identities = 19/42 (45%), Positives = 31/42 (73%), Gaps = 1/42 (2%)
Query: 292 LTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSML 333
++K Y T K +D+++LD+ + IT ++G NGAGKST +SM+
Sbjct: 7 VSKSYGT-KVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMM 47
>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 325
Score = 64.7 bits (158), Expect = 2e-11
Identities = 24/52 (46%), Positives = 38/52 (73%)
Query: 363 KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIW 414
+AV +++ ++ + +I LG NGAGKSTT+ MLTGL++PTSG ++G D +
Sbjct: 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPF 89
Score = 48.9 bits (117), Expect = 3e-06
Identities = 17/35 (48%), Positives = 26/35 (74%)
Query: 301 KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
+AV +++ ++ + +I LG NGAGKSTT+ MLTG
Sbjct: 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTG 72
>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 258
Score = 63.6 bits (156), Expect = 2e-11
Identities = 30/98 (30%), Positives = 53/98 (54%), Gaps = 10/98 (10%)
Query: 349 IQLRGLTKIYKTGKKAV-DNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAY 407
++ R L+ + G + + D+++L + ++ +LG NGAGKST + L+G + P SG
Sbjct: 3 LEARNLS--VRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVR 60
Query: 408 IDGHDI--W--YEMGKVRESLGLCPQYDLLFEELTVED 441
++G + W E+ + R L PQ+ L TVE+
Sbjct: 61 LNGRPLADWSPAELARRRAVL---PQHSSLSFPFTVEE 95
Score = 50.2 bits (121), Expect = 7e-07
Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 296 YKTGKKAV-DNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGY 336
+ G + + D+++L + ++ +LG NGAGKST + L+G
Sbjct: 10 VRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGE 51
>gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of
polysaccharide transport system. The KpsT/Wzt ABC
transporter subfamily is involved in extracellular
polysaccharide export. Among the variety of
membrane-linked or extracellular polysaccharides
excreted by bacteria, only capsular polysaccharides,
lipopolysaccharides, and teichoic acids have been shown
to be exported by ABC transporters. A typical system is
made of a conserved integral membrane and an ABC. In
addition to these proteins, capsular polysaccharide
exporter systems require two 'accessory' proteins to
perform their function: a periplasmic (E.coli) or a
lipid-anchored outer membrane protein called OMA
(Neisseria meningitidis and Haemophilus influenza) and a
cytoplasmic membrane protein MPA2.
Length = 224
Score = 62.9 bits (154), Expect = 3e-11
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 21/87 (24%)
Query: 349 IQLRGLTKIYKTGKK---------------------AVDNLTLDMYQNQITVLLGHNGAG 387
I+L ++K Y T K A+ +++ ++ + + L+G NGAG
Sbjct: 1 IELENVSKSYPTYKGGSSSLKKLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAG 60
Query: 388 KSTTMSMLTGLIIPTSGTAYIDGHDIW 414
KST + +L G+ P SGT + G
Sbjct: 61 KSTLLRLLAGIYPPDSGTVTVRGRVSS 87
Score = 45.6 bits (109), Expect = 2e-05
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 275 YYPIQATYWLEGEVGFCLTKIYKTGKK-AVDNLTLDMYQNQITVLLGHNGAGKSTTMSML 333
YP + L + + G+ A+ +++ ++ + + L+G NGAGKST + +L
Sbjct: 9 SYPTYKGGSSSLKKLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLL 68
Query: 334 TG 335
G
Sbjct: 69 AG 70
>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE. This
model describes FtsE, a member of the ABC transporter
ATP-binding protein family. This protein, and its
permease partner FtsX, localize to the division site. In
a number of species, the ftsEX gene pair is located next
to FtsY, the signal recognition particle-docking protein
[Cellular processes, Cell division].
Length = 214
Score = 62.7 bits (153), Expect = 3e-11
Identities = 31/124 (25%), Positives = 59/124 (47%), Gaps = 8/124 (6%)
Query: 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYI 408
I+ ++K Y G A+ +++L + + + L G +GAGK+T + +L G + P+ G I
Sbjct: 2 IEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRI 61
Query: 409 DGHDIWY----EMGKVRESLGLCPQYDLLFEELTVEDH----LQFFAKGKEFNGITYGRA 460
G D+ ++ +R +G+ Q L + TV ++ L+ K + G A
Sbjct: 62 AGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAA 121
Query: 461 LLLM 464
L +
Sbjct: 122 LRQV 125
Score = 43.4 bits (103), Expect = 7e-05
Identities = 17/57 (29%), Positives = 32/57 (56%)
Query: 292 LTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSKDIVNASG 348
++K Y G A+ +++L + + + L G +GAGK+T + +L G S+ V +G
Sbjct: 7 VSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAG 63
>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport
systems, contain duplicated ATPase [General function
prediction only].
Length = 539
Score = 64.9 bits (159), Expect = 4e-11
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 10/87 (11%)
Query: 337 KRKSKDIVNASGIQLRGLTKIYKTGK----------KAVDNLTLDMYQNQITVLLGHNGA 386
+ + + +R L+K Y + K KAVD+++ D+ + + L+G +G+
Sbjct: 269 LPRRGPLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGS 328
Query: 387 GKSTTMSMLTGLIIPTSGTAYIDGHDI 413
GKST +L GL+ P+SG+ DG D+
Sbjct: 329 GKSTLARILAGLLPPSSGSIIFDGQDL 355
Score = 47.6 bits (114), Expect = 1e-05
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Query: 349 IQLRGLTKIYKTGKK---AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLI----IP 401
+++ LT + T AV +++ ++ +I ++G +G+GKST L GL+
Sbjct: 6 LEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRI 65
Query: 402 TSGTAYIDGHDI 413
TSG +DG D+
Sbjct: 66 TSGEVILDGRDL 77
Score = 42.9 bits (102), Expect = 3e-04
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 10/59 (16%)
Query: 292 LTKIYKTGK----------KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKS 340
L+K Y + K KAVD+++ D+ + + L+G +G+GKST +L G S
Sbjct: 286 LSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPS 344
Score = 40.6 bits (96), Expect = 0.001
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 292 LTKIYKTGKK---AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSKDIVNASG 348
LT + T AV +++ ++ +I ++G +G+GKST L G + I +
Sbjct: 11 LTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGE- 69
Query: 349 IQLRG 353
+ L G
Sbjct: 70 VILDG 74
>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase
component [Amino acid transport and metabolism].
Length = 240
Score = 62.5 bits (153), Expect = 4e-11
Identities = 30/95 (31%), Positives = 57/95 (60%), Gaps = 3/95 (3%)
Query: 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYI 408
I+++ L+K + K+ + ++L + + ++ V++G +G+GKST + L GL P SG+ +
Sbjct: 3 IEIKNLSKSFG-DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITV 61
Query: 409 DGHDIWY--EMGKVRESLGLCPQYDLLFEELTVED 441
DG D+ ++ K+R +G+ Q LF LTV +
Sbjct: 62 DGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLE 96
Score = 34.8 bits (81), Expect = 0.072
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 44 IAGLIIPTSGTAYIDGHDIWY--EMGKVRESLGLCPQYDLLFEELTVED 90
+ GL P SG+ +DG D+ ++ K+R +G+ Q LF LTV +
Sbjct: 48 LNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLE 96
Score = 30.6 bits (70), Expect = 1.6
Identities = 11/37 (29%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 292 LTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKST 328
L+K + K+ + ++L + + ++ V++G +G+GKST
Sbjct: 8 LSKSFG-DKEVLKGISLSVEKGEVVVIIGPSGSGKST 43
>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding
cassette component of cobalt transport system. Domain
II of the ABC component of a cobalt transport family
found in bacteria, archaea, and eukaryota. The
transition metal cobalt is an essential component of
many enzymes and must be transported into cells in
appropriate amounts when needed. The CbiMNQO family ABC
transport system is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 205
Score = 61.9 bits (151), Expect = 5e-11
Identities = 34/98 (34%), Positives = 54/98 (55%), Gaps = 5/98 (5%)
Query: 353 GLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHD 412
++ YK G + +D+L+LD+Y +I L G NGAGK+T +L GLI +SG+ ++G
Sbjct: 4 NISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKP 63
Query: 413 IWYEMGKVRESLGLCPQ--YDLLFEELTVEDHLQFFAK 448
I + R+S+G Q LF + +V + L K
Sbjct: 64 IKA--KERRKSIGYVMQDVDYQLFTD-SVREELLLGLK 98
Score = 47.3 bits (113), Expect = 4e-06
Identities = 20/50 (40%), Positives = 32/50 (64%)
Query: 292 LTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSK 341
++ YK G + +D+L+LD+Y +I L G NGAGK+T +L G ++S
Sbjct: 5 ISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESS 54
>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 62.8 bits (153), Expect = 5e-11
Identities = 33/105 (31%), Positives = 57/105 (54%), Gaps = 11/105 (10%)
Query: 348 GIQLRGLTKIYKTGK----KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTS 403
GI L+ ++ Y+ G +A+ ++ L + T +GH G+GKST M +L GL +PT
Sbjct: 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQ 61
Query: 404 GTAYIDGHDIWY-----EMGKVRESLGLCPQY--DLLFEELTVED 441
G+ +D I ++ ++R+ +GL Q+ LFEE ++D
Sbjct: 62 GSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKD 106
Score = 36.6 bits (85), Expect = 0.018
Identities = 15/56 (26%), Positives = 27/56 (48%)
Query: 301 KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSKDIVNASGIQLRGLTK 356
+A+ ++ L + T +GH G+GKST M +L G ++ V + +K
Sbjct: 21 RALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSK 76
Score = 29.3 bits (66), Expect = 3.8
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 7/52 (13%)
Query: 46 GLIIPTSGTAYIDGHDIWY-----EMGKVRESLGLCPQY--DLLFEELTVED 90
GL +PT G+ +D I ++ ++R+ +GL Q+ LFEE ++D
Sbjct: 55 GLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKD 106
>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding
protein. Phosphonates are a class of
phosphorus-containing organic compound with a stable
direct C-P bond rather than a C-O-P linkage. A number of
bacterial species have operons, typically about 14 genes
in size, with genes for ATP-dependent transport of
phosphonates, degradation, and regulation of the
expression of the system. Members of this protein family
are the ATP-binding cassette component of tripartite ABC
transporters of phosphonates [Transport and binding
proteins, Anions].
Length = 243
Score = 62.3 bits (152), Expect = 5e-11
Identities = 32/95 (33%), Positives = 57/95 (60%), Gaps = 4/95 (4%)
Query: 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYI 408
+++ L+K+Y GK+A+ N+ L++ + ++G +GAGKST + + L+ P+SG+ +
Sbjct: 2 LEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILL 61
Query: 409 DGHDIWYEMGK----VRESLGLCPQYDLLFEELTV 439
+G DI GK +R +G+ Q+ L E LTV
Sbjct: 62 EGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTV 96
Score = 41.9 bits (99), Expect = 3e-04
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 8/69 (11%)
Query: 292 LTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKS--------KDI 343
L+K+Y GK+A+ N+ L++ + ++G +GAGKST + + S DI
Sbjct: 7 LSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDI 66
Query: 344 VNASGIQLR 352
G +LR
Sbjct: 67 TKLRGKKLR 75
>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding
protein UrtE. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 230
Score = 61.8 bits (151), Expect = 6e-11
Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 6/85 (7%)
Query: 364 AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIW----YEMGK 419
+ ++L++ + ++T +LG NG GK+T + L GL+ SG+ +DG DI +E +
Sbjct: 15 ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHE--R 72
Query: 420 VRESLGLCPQYDLLFEELTVEDHLQ 444
R + PQ +F LTVE++L
Sbjct: 73 ARAGIAYVPQGREIFPRLTVEENLL 97
Score = 38.3 bits (90), Expect = 0.004
Identities = 11/34 (32%), Positives = 22/34 (64%)
Query: 302 AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
+ ++L++ + ++T +LG NG GK+T + L G
Sbjct: 15 ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMG 48
Score = 30.6 bits (70), Expect = 1.3
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 44 IAGLIIPTSGTAYIDGHDIW----YEMGKVRESLGLCPQYDLLFEELTVEDHLQ 93
+ GL+ SG+ +DG DI +E + R + PQ +F LTVE++L
Sbjct: 46 LMGLLPVKSGSIRLDGEDITKLPPHE--RARAGIAYVPQGREIFPRLTVEENLL 97
>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding
protein; Provisional.
Length = 241
Score = 62.2 bits (151), Expect = 6e-11
Identities = 34/92 (36%), Positives = 52/92 (56%), Gaps = 3/92 (3%)
Query: 354 LTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDI 413
L K YK G++ V++++L + +I LLG NGAGK+TT M+ G++ +G ID DI
Sbjct: 9 LAKAYK-GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDI 67
Query: 414 WY--EMGKVRESLGLCPQYDLLFEELTVEDHL 443
+ R +G PQ +F L+V D+L
Sbjct: 68 SLLPLHARARRGIGYLPQEASIFRRLSVYDNL 99
Score = 44.9 bits (106), Expect = 4e-05
Identities = 20/44 (45%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 292 LTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
L K YK G++ V++++L + +I LLG NGAGK+TT M+ G
Sbjct: 9 LAKAYK-GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVG 51
>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine
transporter. PotA is an ABC-type transporter and the
ATPase component of the
spermidine/putrescine-preferential uptake system
consisting of PotA, -B, -C, and -D. PotA has two domains
with the N-terminal domain containing the ATPase
activity and the residues required for homodimerization
with PotA and heterdimerization with PotB. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 232
Score = 61.9 bits (151), Expect = 7e-11
Identities = 32/97 (32%), Positives = 53/97 (54%), Gaps = 2/97 (2%)
Query: 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYI 408
I+L ++K Y G A+D ++LD+ + + LLG +G GK+T + ++ G PTSG +
Sbjct: 1 IELENVSKFYG-GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILL 59
Query: 409 DGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQF 445
DG DI + + + Q LF LTV +++ F
Sbjct: 60 DGKDI-TNLPPHKRPVNTVFQNYALFPHLTVFENIAF 95
Score = 40.3 bits (95), Expect = 0.001
Identities = 15/45 (33%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 292 LTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGY 336
++K Y G A+D ++LD+ + + LLG +G GK+T + ++ G+
Sbjct: 6 VSKFYG-GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGF 49
>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI;
Provisional.
Length = 340
Score = 62.9 bits (153), Expect = 8e-11
Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 1/100 (1%)
Query: 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYI 408
I L G++K Y K V+ L+ + + LLG NGAGKST M+ G+ P +G +
Sbjct: 42 IDLAGVSKSYG-DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITV 100
Query: 409 DGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAK 448
G + R +G+ PQ+D L E TV ++L F +
Sbjct: 101 LGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGR 140
Score = 35.2 bits (81), Expect = 0.056
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 292 LTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSKDIVNASGIQL 351
++K Y K V+ L+ + + LLG NGAGKST M+ G + G+ +
Sbjct: 47 VSKSYG-DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPV 105
Query: 352 RGLTKIYKTGKKAV---DNLTLD 371
++ + V DNL L+
Sbjct: 106 PARARLARARIGVVPQFDNLDLE 128
Score = 31.7 bits (72), Expect = 0.74
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 29 GAMKDYIAGVVFDDDIAGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTV 88
GA K IA + I G+ P +G + G + R +G+ PQ+D L E TV
Sbjct: 77 GAGKSTIARM-----ILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTV 131
Query: 89 EDHLQFFAKW 98
++L F ++
Sbjct: 132 RENLLVFGRY 141
>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation
protein NodI. This protein is required for normal
nodulation by nitrogen-fixing root nodule bacteria such
as Mesorhizobium loti. It is a member of the family of
ABC transporter ATP binding proteins and works with NodJ
to export a nodulation signal molecule. This model does
not recognize the highly divergent NodI from
Azorhizobium caulinodans [Cellular processes, Other,
Transport and binding proteins, Other].
Length = 303
Score = 62.6 bits (152), Expect = 8e-11
Identities = 36/100 (36%), Positives = 54/100 (54%), Gaps = 1/100 (1%)
Query: 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYI 408
I L G++K Y K V++L+ + + + LLG NGAGKST ML G+I P G +
Sbjct: 5 IDLVGVSKSYG-DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITV 63
Query: 409 DGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAK 448
G + R ++G+ PQ+D L E TV ++L F +
Sbjct: 64 LGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGR 103
Score = 34.1 bits (78), Expect = 0.11
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 5/85 (5%)
Query: 292 LTKIYKT--GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSKDIVNASGI 349
L + K+ K V++L+ + + + LLG NGAGKST ML G + + G
Sbjct: 7 LVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGE 66
Query: 350 QLRGLTKIYKTGKKAV---DNLTLD 371
+ ++ + V DNL +
Sbjct: 67 PVPSRARLARVAIGVVPQFDNLDPE 91
Score = 34.1 bits (78), Expect = 0.12
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 6/90 (6%)
Query: 10 INQQAFA-NSSELQDALTQPGAMKDYIAGVVFDDDIAGLIIPTSGTAYIDGHDIWYEMGK 68
+N +F E L GA K IA ++ G+I P G + G +
Sbjct: 20 VNDLSFTIARGECFGLLGPNGAGKSTIARMLL-----GMISPDRGKITVLGEPVPSRARL 74
Query: 69 VRESLGLCPQYDLLFEELTVEDHLQFFAKW 98
R ++G+ PQ+D L E TV ++L F ++
Sbjct: 75 ARVAIGVVPQFDNLDPEFTVRENLLVFGRY 104
>gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit;
Provisional.
Length = 343
Score = 62.9 bits (154), Expect = 8e-11
Identities = 23/68 (33%), Positives = 43/68 (63%), Gaps = 3/68 (4%)
Query: 349 IQLRGLTKIYKTGKK---AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGT 405
I+L+ ++K++ G + A++N++L + +I ++G +GAGKST + + L PTSG
Sbjct: 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGR 61
Query: 406 AYIDGHDI 413
+DG D+
Sbjct: 62 VLVDGQDL 69
Score = 41.3 bits (98), Expect = 7e-04
Identities = 13/40 (32%), Positives = 27/40 (67%), Gaps = 3/40 (7%)
Query: 292 LTKIYKTGKK---AVDNLTLDMYQNQITVLLGHNGAGKST 328
++K++ G + A++N++L + +I ++G +GAGKST
Sbjct: 7 ISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKST 46
>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 61.6 bits (150), Expect = 1e-10
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 362 KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIW-YEMGKV 420
K+ +++L+L + +IT L+G NG GKST + L+ P SGT ++ I ++
Sbjct: 15 KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQL 74
Query: 421 RESLGLCPQYDLLFEELTVED 441
L L PQ+ L E +TV +
Sbjct: 75 ARRLALLPQHHLTPEGITVRE 95
Score = 40.8 bits (96), Expect = 8e-04
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 300 KKAVDNLTLDMYQNQITVLLGHNGAGKSTTM 330
K+ +++L+L + +IT L+G NG GKST +
Sbjct: 15 KRILNDLSLSLPTGKITALIGPNGCGKSTLL 45
>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd
biosynthesis, ATPase and permease components [Energy
production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 559
Score = 63.0 bits (154), Expect = 1e-10
Identities = 26/69 (37%), Positives = 40/69 (57%)
Query: 345 NASGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSG 404
I L L+ Y GK A+ +L L + Q+T L+G +GAGKST +++L G + PT G
Sbjct: 317 PPIEISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQG 376
Query: 405 TAYIDGHDI 413
++G D+
Sbjct: 377 EIRVNGIDL 385
Score = 47.6 bits (114), Expect = 9e-06
Identities = 19/44 (43%), Positives = 29/44 (65%)
Query: 292 LTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
L+ Y GK A+ +L L + Q+T L+G +GAGKST +++L G
Sbjct: 326 LSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLG 369
>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the
histidine and glutamine transporters. HisP and GlnQ are
the ATP-binding components of the bacterial periplasmic
histidine and glutamine permeases, respectively.
Histidine permease is a multi-subunit complex containing
the HisQ and HisM integral membrane subunits and two
copies of HisP. HisP has properties intermediate between
those of integral and peripheral membrane proteins and
is accessible from both sides of the membrane,
presumably by its interaction with HisQ and HisM. The
two HisP subunits form a homodimer within the complex.
The domain structure of the amino acid uptake systems is
typical for prokaryotic extracellular solute binding
protein-dependent uptake systems. All of the amino acid
uptake systems also have at least one, and in a few
cases, two extracellular solute binding proteins located
in the periplasm of Gram-negative bacteria, or attached
to the cell membrane of Gram-positive bacteria. The
best-studied member of the PAAT (polar amino acid
transport) family is the HisJQMP system of S.
typhimurium, where HisJ is the extracellular solute
binding proteins and HisP is the ABC protein.
Length = 213
Score = 60.2 bits (147), Expect = 2e-10
Identities = 27/94 (28%), Positives = 50/94 (53%), Gaps = 4/94 (4%)
Query: 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYI 408
I+++ L K + + + L + + ++ V++G +G+GKST + + L P SGT I
Sbjct: 1 IEIKNLHKSFG-DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIII 59
Query: 409 DGHDIW---YEMGKVRESLGLCPQYDLLFEELTV 439
DG + + ++R+ +G+ Q LF LTV
Sbjct: 60 DGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTV 93
Score = 34.0 bits (79), Expect = 0.088
Identities = 10/37 (27%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 292 LTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKST 328
L K + + + L + + ++ V++G +G+GKST
Sbjct: 6 LHKSFG-DFHVLKGIDLTVKKGEVVVIIGPSGSGKST 41
Score = 28.6 bits (65), Expect = 5.9
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 44 IAGLIIPTSGTAYIDGHDIW---YEMGKVRESLGLCPQYDLLFEELTV 88
I L P SGT IDG + + ++R+ +G+ Q LF LTV
Sbjct: 46 INLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTV 93
>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial
lipid flippase and related proteins, subfamily C. MsbA
is an essential ABC transporter, closely related to
eukaryotic MDR proteins. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 234
Score = 60.3 bits (147), Expect = 2e-10
Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 14/102 (13%)
Query: 359 KTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDI-WYEM 417
G + +++LD+ + L+G +G+GKST ++++ SG IDGHD+ Y +
Sbjct: 12 GDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTL 71
Query: 418 GKVRESLGLCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGR 459
+R +GL Q LF + TV I YGR
Sbjct: 72 ASLRRQIGLVSQDVFLFND-TV------------AENIAYGR 100
Score = 34.9 bits (81), Expect = 0.058
Identities = 10/38 (26%), Positives = 23/38 (60%)
Query: 297 KTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLT 334
G + +++LD+ + L+G +G+GKST ++++
Sbjct: 12 GDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIP 49
Score = 32.2 bits (74), Expect = 0.45
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 50 PTSGTAYIDGHDI-WYEMGKVRESLGLCPQYDLLFEELTVEDHLQF 94
SG IDGHD+ Y + +R +GL Q LF + TV +++ +
Sbjct: 54 VDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFND-TVAENIAY 98
>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of
glucan transporter and related proteins, subfamily C.
Glucan exporter ATP-binding protein. In A. tumefaciens
cyclic beta-1, 2-glucan must be transported into the
periplasmic space to exert its action as a virulence
factor. This subfamily belongs to the MRP-like family
and is involved in drug, peptide, and lipid export. The
MRP-like family, similar to all ABC proteins, have a
common four-domain core structure constituted by two
membrane-spanning domains each composed of six
transmembrane (TM) helices and two nucleotide-binding
domains (NBD). ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 229
Score = 60.3 bits (147), Expect = 2e-10
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 358 YKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIW-YE 416
Y K + ++ + + ++G GAGK+T +++L P G IDG DI
Sbjct: 12 YDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDIS 71
Query: 417 MGKVRESLGLCPQYDLLF 434
+R +G+ Q LF
Sbjct: 72 RKSLRSMIGVVLQDTFLF 89
Score = 39.1 bits (92), Expect = 0.003
Identities = 13/61 (21%), Positives = 30/61 (49%)
Query: 296 YKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSKDIVNASGIQLRGLT 355
Y K + ++ + + ++G GAGK+T +++L + K + GI +R ++
Sbjct: 12 YDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDIS 71
Query: 356 K 356
+
Sbjct: 72 R 72
Score = 29.9 bits (68), Expect = 2.3
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 44 IAGLIIPTSGTAYIDGHDIW-YEMGKVRESLGLCPQYDLLF 83
+ P G IDG DI +R +G+ Q LF
Sbjct: 49 LMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLF 89
>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 237
Score = 59.9 bits (145), Expect = 3e-10
Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 5/95 (5%)
Query: 363 KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDI--WYEMGKV 420
+A+ ++L + Q +I L+G NGAGK+T + L G TSG DG DI W +
Sbjct: 19 QALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIM 78
Query: 421 RESLGLCPQYDLLFEELTVEDHLQ---FFAKGKEF 452
RE++ + P+ +F +TVE++L FFA+ +F
Sbjct: 79 REAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQF 113
Score = 36.8 bits (85), Expect = 0.013
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 301 KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSK 341
+A+ ++L + Q +I L+G NGAGK+T + L G R +
Sbjct: 19 QALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATS 59
Score = 31.8 bits (72), Expect = 0.57
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Query: 51 TSGTAYIDGHDI--WYEMGKVRESLGLCPQYDLLFEELTVEDHLQ---FFAK 97
TSG DG DI W +RE++ + P+ +F +TVE++L FFA+
Sbjct: 58 TSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAE 109
>gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase
component [General function prediction only].
Length = 249
Score = 60.0 bits (146), Expect = 3e-10
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Query: 361 GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGH-DI--WYEM 417
G KA+++L+ + ++ VL+G NGAGK+T M ++TG P G DG D+ E
Sbjct: 17 GFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEH 76
Query: 418 GKVRESLGLCPQYDLLFEELTVEDHLQ 444
R +G Q +FE LTV ++L+
Sbjct: 77 RIARAGIGRKFQKPTVFENLTVRENLE 103
Score = 41.6 bits (98), Expect = 4e-04
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 299 GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSKDIVNASGIQLRGLTKIY 358
G KA+++L+ + ++ VL+G NGAGK+T M ++TG R + V G T +
Sbjct: 17 GFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEV-----LFDGDTDLT 71
Query: 359 KT 360
K
Sbjct: 72 KL 73
Score = 29.6 bits (67), Expect = 2.8
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 42 DDIAGLIIPTSGTAYIDGH-DI--WYEMGKVRESLGLCPQYDLLFEELTVEDHLQ 93
D I G P G DG D+ E R +G Q +FE LTV ++L+
Sbjct: 49 DVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLE 103
>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 60.1 bits (146), Expect = 4e-10
Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 7/90 (7%)
Query: 360 TGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDI--W--Y 415
G++ +D ++LD+ ++ +LG NGAGKST + L+G + P SG ++G + W
Sbjct: 12 AGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPE 71
Query: 416 EMGKVRESLGLCPQYDLLFEELTVEDHLQF 445
E+ + R + PQ L TV++ +Q
Sbjct: 72 ELARHR---AVLPQNSSLAFPFTVQEVVQM 98
Score = 50.0 bits (120), Expect = 7e-07
Identities = 18/54 (33%), Positives = 31/54 (57%)
Query: 298 TGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSKDIVNASGIQL 351
G++ +D ++LD+ ++ +LG NGAGKST + L+G V +G+ L
Sbjct: 12 AGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPL 65
>gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 59.8 bits (145), Expect = 5e-10
Identities = 35/104 (33%), Positives = 54/104 (51%), Gaps = 11/104 (10%)
Query: 349 IQLRGLTKIYKTG----KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSG 404
I+ + IY G KK +DN++ ++ + L+GH G+GKST M L+ P+SG
Sbjct: 3 IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSG 62
Query: 405 TAYIDGHDIWYEMG-----KVRESLGLCPQY--DLLFEELTVED 441
T I G+ I E G K+R+ + L Q+ LFE ++D
Sbjct: 63 TITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKD 106
Score = 39.4 bits (92), Expect = 0.002
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 10/75 (13%)
Query: 295 IYKTG----KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSKDIVNASGIQ 350
IY G KK +DN++ ++ + L+GH G+GKST M + S + +G
Sbjct: 11 IYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYH 70
Query: 351 L------RGLTKIYK 359
+ + L K+ K
Sbjct: 71 ITPETGNKNLKKLRK 85
>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 59.7 bits (145), Expect = 5e-10
Identities = 38/100 (38%), Positives = 53/100 (53%), Gaps = 4/100 (4%)
Query: 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYI 408
I++ L YK G KA+ L+L + + T LLG NGAGKST + L G+ +P G +
Sbjct: 5 IEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKV 64
Query: 409 DGHDIWYEMGK-VRESLGLCPQ--YDLLFEELTVEDHLQF 445
G ++ E K VR +GL Q D +F TV D + F
Sbjct: 65 MGREVNAENEKWVRSKVGLVFQDPDDQVFSS-TVWDDVAF 103
Score = 45.5 bits (108), Expect = 2e-05
Identities = 23/60 (38%), Positives = 31/60 (51%)
Query: 292 LTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSKDIVNASGIQL 351
L YK G KA+ L+L + + T LLG NGAGKST + L G + V G ++
Sbjct: 10 LHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREV 69
>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of
the sulfate transporter. Part of the ABC transporter
complex cysAWTP involved in sulfate import. Responsible
for energy coupling to the transport system. The complex
is composed of two ATP-binding proteins (cysA), two
transmembrane proteins (cysT and cysW), and a
solute-binding protein (cysP). ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 239
Score = 59.3 bits (144), Expect = 6e-10
Identities = 32/99 (32%), Positives = 57/99 (57%), Gaps = 4/99 (4%)
Query: 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAY 407
I++R ++K + A+D+++LD+ ++ LLG +G+GK+T + ++ GL P SGT
Sbjct: 2 SIEVRNVSKRFG-DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTIL 60
Query: 408 IDGHDIWYEMGKVRE-SLGLCPQYDLLFEELTVEDHLQF 445
G D V+E ++G Q+ LF +TV D++ F
Sbjct: 61 FGGEDATDV--PVQERNVGFVFQHYALFRHMTVFDNVAF 97
Score = 33.1 bits (76), Expect = 0.25
Identities = 14/47 (29%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 292 LTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKR 338
++K + A+D+++LD+ ++ LLG +G+GK+T + ++ G +R
Sbjct: 8 VSKRFG-DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLER 53
Score = 30.8 bits (70), Expect = 1.2
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 44 IAGLIIPTSGTAYIDGHDIWYEMGKVRE-SLGLCPQYDLLFEELTVEDHLQF 94
IAGL P SGT G D V+E ++G Q+ LF +TV D++ F
Sbjct: 48 IAGLERPDSGTILFGGEDATDV--PVQERNVGFVFQHYALFRHMTVFDNVAF 97
>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of
PrtD, subfamily C. This family represents the ABC
component of the protease secretion system PrtD, a
60-kDa integral membrane protein sharing 37% identity
with HlyB, the ABC component of the alpha-hemolysin
secretion pathway, in the C-terminal domain. They export
degradative enzymes by using a type I protein secretion
system and lack an N-terminal signal peptide, but
contain a C-terminal secretion signal. The Type I
secretion apparatus is made up of three components, an
ABC transporter, a membrane fusion protein (MFP), and an
outer membrane protein (OMP). For the HlyA transporter
complex, HlyB (ABC transporter) and HlyD (MFP) reside in
the inner membrane of E. coli. The OMP component is
TolC, which is thought to interact with the MFP to form
a continuous channel across the periplasm from the
cytoplasm to the exterior. HlyB belongs to the family of
ABC transporters, which are ubiquitous, ATP-dependent
transmembrane pumps or channels. The spectrum of
transport substrates ranges from inorganic ions,
nutrients such as amino acids, sugars, or peptides,
hydrophobic drugs, to large polypeptides, such as HlyA.
Length = 173
Score = 58.0 bits (141), Expect = 6e-10
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Query: 349 IQLRGLTKIYKTGKKAV-DNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAY 407
+++ ++ Y + V N++ + + ++G +G+GKST ++ GL+ PTSG
Sbjct: 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVR 60
Query: 408 IDGHDI--WYEMGKVRESLGLCPQYDLLFE 435
+DG DI W + +G PQ D LF
Sbjct: 61 LDGADISQWDPNEL-GDHVGYLPQDDELFS 89
Score = 38.0 bits (89), Expect = 0.003
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 44 IAGLIIPTSGTAYIDGHDI--WYEMGKVRESLGLCPQYDLLFE 84
I GL+ PTSG +DG DI W + +G PQ D LF
Sbjct: 48 ILGLLRPTSGRVRLDGADISQWDPNEL-GDHVGYLPQDDELFS 89
>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 255
Score = 59.2 bits (144), Expect = 6e-10
Identities = 39/113 (34%), Positives = 59/113 (52%), Gaps = 22/113 (19%)
Query: 340 SKDIVNASGIQLR--GLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 397
S+ +++ SG+ +R GL AV+N+ L++ + +I L+G NGAGK+T + LTG
Sbjct: 2 SQPLLSVSGLMMRFGGLL--------AVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTG 53
Query: 398 LIIPTSGTAYIDGHDIW-------YEMGKVRESLGLCPQYDLLFEELTVEDHL 443
PT GT + G I MG VR Q+ LF E+TV ++L
Sbjct: 54 FYKPTGGTILLRGQHIEGLPGHQIARMGVVRTF-----QHVRLFREMTVIENL 101
Score = 45.0 bits (107), Expect = 3e-05
Identities = 19/54 (35%), Positives = 33/54 (61%)
Query: 302 AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSKDIVNASGIQLRGLT 355
AV+N+ L++ + +I L+G NGAGK+T + LTG+ + + + G + GL
Sbjct: 20 AVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLP 73
>gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase
protein; Reviewed.
Length = 375
Score = 60.3 bits (147), Expect = 7e-10
Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYI 408
++LRG++K + GK+ + NL L + + LLG +G GK+T + ++ G P SG +
Sbjct: 15 VELRGISKSFD-GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIML 73
Query: 409 DGHDI 413
DG DI
Sbjct: 74 DGQDI 78
Score = 34.2 bits (79), Expect = 0.15
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 292 LTKIYKT--GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGY 336
L I K+ GK+ + NL L + + LLG +G GK+T + ++ G+
Sbjct: 17 LRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGF 63
Score = 28.8 bits (65), Expect = 6.5
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 44 IAGLIIPTSGTAYIDGHDI 62
IAG P SG +DG DI
Sbjct: 60 IAGFETPDSGRIMLDGQDI 78
>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system,
component A2. The enzyme that catalyzes the final step
in methanogenesis, methyl coenzyme M reductase, contains
alpha, beta, and gamma chains. In older literature, the
complex of alpha, beta, and gamma chains was termed
component C, while this single chain protein was termed
methyl coenzyme M reductase system component A2 [Energy
metabolism, Methanogenesis].
Length = 520
Score = 60.6 bits (147), Expect = 7e-10
Identities = 33/107 (30%), Positives = 60/107 (56%), Gaps = 12/107 (11%)
Query: 349 IQLRGLTKIYKTGK----KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSG 404
I++R ++K Y + KAVDN++L++ + +I ++G +GAGK+T ++ G++ PTSG
Sbjct: 280 IKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSG 339
Query: 405 TAYIDGHDIWYEM--------GKVRESLGLCPQYDLLFEELTVEDHL 443
+ D W +M G+ + +G+ Q L+ TV D+L
Sbjct: 340 EVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNL 386
Score = 40.6 bits (95), Expect = 0.002
Identities = 14/35 (40%), Positives = 26/35 (74%)
Query: 301 KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
KAVDN++L++ + +I ++G +GAGK+T ++ G
Sbjct: 298 KAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAG 332
Score = 39.8 bits (93), Expect = 0.003
Identities = 21/58 (36%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGL--IIPTSG 404
I+++ LTK + GK+ + N++ + + ++ +LG +GAGKS M +L G+ PTSG
Sbjct: 1 IEVKNLTKKFD-GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSG 57
Score = 34.8 bits (80), Expect = 0.11
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 292 LTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYK 337
LTK + GK+ + N++ + + ++ +LG +GAGKS M +L G
Sbjct: 6 LTKKFD-GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMD 50
Score = 32.5 bits (74), Expect = 0.51
Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 14/100 (14%)
Query: 44 IAGLIIPTSGTAYIDGHDIWYEMGKVRESL-GLCPQY-DLLFEELTVEDHLQFFAKWRIT 101
IAG++ PTSG + D W +M K G +Y +L +E + H
Sbjct: 330 IAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPH---------- 379
Query: 102 YSSLLRNWTIAWSPYHPELFNVMSRASFVIGYQLFDDDIA 141
++L N T A P+ M +A + FD++ A
Sbjct: 380 -RTVLDNLTEAIGLELPDELARM-KAVITLKMVGFDEEKA 417
>gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 59.3 bits (144), Expect = 9e-10
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 10/76 (13%)
Query: 360 TGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHD------I 413
T K A+D++ L++ + + V+LG NG+GKST + L+IP+ G Y+DG D +
Sbjct: 21 TEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENL 80
Query: 414 WYEMGKVRESLGLCPQ 429
W +R G+ Q
Sbjct: 81 W----DIRNKAGMVFQ 92
Score = 38.5 bits (90), Expect = 0.004
Identities = 14/31 (45%), Positives = 23/31 (74%)
Query: 298 TGKKAVDNLTLDMYQNQITVLLGHNGAGKST 328
T K A+D++ L++ + + V+LG NG+GKST
Sbjct: 21 TEKLALDDVNLEVKKGEFLVILGRNGSGKST 51
>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex. Unfortunately, the gene symbol
nomenclature adopted based on this operon in B. subtilis
assigns cydC to the third gene in the operon where this
gene is actually homologous to the E. coli cydD gene. We
have chosen to name all homologs in this family in
accordance with the precedence of publication of the E.
coli name, CydD.
Length = 529
Score = 60.4 bits (147), Expect = 9e-10
Identities = 24/105 (22%), Positives = 52/105 (49%), Gaps = 2/105 (1%)
Query: 346 ASGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGT 405
A ++ G++ Y + A+ ++ + + L+G +GAGKST +++L G + PT G+
Sbjct: 319 APSLEFSGVSVAYPGRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGS 378
Query: 406 AYIDGHDIWYEMGKV-RESLGLCPQYDLLFEELTVEDHLQFFAKG 449
++G + R+ + PQ+ LF T+ ++++
Sbjct: 379 IAVNGVPLADADADSWRDQIAWVPQHPFLFAG-TIAENIRLARPD 422
Score = 38.4 bits (90), Expect = 0.008
Identities = 14/64 (21%), Positives = 33/64 (51%)
Query: 292 LTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSKDIVNASGIQL 351
++ Y + A+ ++ + + L+G +GAGKST +++L G+ ++ + +G+ L
Sbjct: 327 VSVAYPGRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPL 386
Query: 352 RGLT 355
Sbjct: 387 ADAD 390
>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 59.0 bits (143), Expect = 1e-09
Identities = 36/100 (36%), Positives = 53/100 (53%), Gaps = 4/100 (4%)
Query: 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYI 408
I+ R L Y K+A++N+ +N ++G NGAGKST G++ PTSG+ I
Sbjct: 4 IETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLI 63
Query: 409 DGHDIWYE-MGKVRESLGLCPQY--DLLFEELTVEDHLQF 445
G I E + +VR+ +GL Q D +F TVE + F
Sbjct: 64 RGEPITKENIREVRKFVGLVFQNPDDQIFSP-TVEQDIAF 102
Score = 37.9 bits (88), Expect = 0.009
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 292 LTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
L Y K+A++N+ +N ++G NGAGKST G
Sbjct: 9 LCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNG 52
>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system,
ATPase component [Amino acid transport and metabolism].
Length = 386
Score = 59.7 bits (145), Expect = 1e-09
Identities = 27/66 (40%), Positives = 42/66 (63%), Gaps = 4/66 (6%)
Query: 352 RGLTK--IY-KTGKK-AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAY 407
+G +K I KTG V++ +LD+ + +I V++G +G+GKST + +L LI PT G
Sbjct: 27 QGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEIL 86
Query: 408 IDGHDI 413
+DG DI
Sbjct: 87 VDGKDI 92
Score = 39.3 bits (92), Expect = 0.003
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 8/61 (13%)
Query: 302 AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKR--------KSKDIVNASGIQLRG 353
V++ +LD+ + +I V++G +G+GKST + +L KDI S +LR
Sbjct: 43 GVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRE 102
Query: 354 L 354
L
Sbjct: 103 L 103
>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD,
subfamily C. The CYD subfamily implicated in cytochrome
bd biogenesis. The CydC and CydD proteins are important
for the formation of cytochrome bd terminal oxidase of
E. coli and it has been proposed that they were
necessary for biosynthesis of the cytochrome bd quinol
oxidase and for periplasmic c-type cytochromes. CydCD
were proposed to determine a heterooligomeric complex
important for heme export into the periplasm or to be
involved in the maintenance of the proper redox state of
the periplasmic space. In Bacillus subtilis, the absence
of CydCD does not affect the presence of halo-cytochrome
c in the membrane and this observation suggests that
CydCD proteins are not involved in the export of heme in
this organism.
Length = 178
Score = 56.9 bits (138), Expect = 1e-09
Identities = 31/120 (25%), Positives = 59/120 (49%), Gaps = 12/120 (10%)
Query: 349 IQLRGLTKIYK-TGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAY 407
+ + ++ Y ++ + NL+L++ Q + LLG +G+GKST + +LTG + P G
Sbjct: 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEIT 60
Query: 408 IDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAKGKEFNG-----ITYGRALL 462
+DG + + + + Q LF+ T+ ++L G+ F+G + R LL
Sbjct: 61 LDGVPVSDLEKALSSLISVLNQRPYLFDT-TLRNNL-----GRRFSGGERQRLALARILL 114
Score = 39.2 bits (92), Expect = 0.002
Identities = 15/36 (41%), Positives = 26/36 (72%)
Query: 300 KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
++ + NL+L++ Q + LLG +G+GKST + +LTG
Sbjct: 15 QQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTG 50
>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 58.5 bits (142), Expect = 1e-09
Identities = 33/114 (28%), Positives = 58/114 (50%), Gaps = 14/114 (12%)
Query: 349 IQLRGLTKIYKTGKK-AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAY 407
I++ ++ Y A+ +++ +Y+ + ++GHNG+GKST +L GL++P +GT
Sbjct: 6 IRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTIT 65
Query: 408 IDG-----HDIWYEMGKVRESLGLCPQY-DLLFEELTVEDHLQFFAKGKEFNGI 455
+ G +W VR +G+ Q D F TV+D + F G E G+
Sbjct: 66 VGGMVLSEETVW----DVRRQVGMVFQNPDNQFVGATVQDDVAF---GLENIGV 112
Score = 37.3 bits (87), Expect = 0.010
Identities = 14/52 (26%), Positives = 27/52 (51%)
Query: 300 KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSKDIVNASGIQL 351
A+ +++ +Y+ + ++GHNG+GKST +L G + G+ L
Sbjct: 20 TYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVL 71
>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase
component [Inorganic ion transport and metabolism].
Length = 345
Score = 58.9 bits (143), Expect = 2e-09
Identities = 30/99 (30%), Positives = 56/99 (56%), Gaps = 3/99 (3%)
Query: 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYI 408
I++ + K + A+D+++LD+ ++ LLG +GAGKST + ++ GL P +G +
Sbjct: 3 IRINNVKKRF-GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRL 61
Query: 409 DGHDIW-YEMGKVRE-SLGLCPQYDLLFEELTVEDHLQF 445
+G ++ VR+ +G Q+ LF +TV D++ F
Sbjct: 62 NGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAF 100
Score = 39.6 bits (93), Expect = 0.002
Identities = 14/38 (36%), Positives = 25/38 (65%)
Query: 298 TGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
A+D+++LD+ ++ LLG +GAGKST + ++ G
Sbjct: 13 GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAG 50
Score = 28.5 bits (64), Expect = 7.3
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 44 IAGLIIPTSGTAYIDGHDIW-YEMGKVRE-SLGLCPQYDLLFEELTVEDHLQF 94
IAGL P +G ++G ++ VR+ +G Q+ LF +TV D++ F
Sbjct: 48 IAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAF 100
>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit.
This model describes the ATP binding subunit of the
multisubunit cobalt transporter in bacteria and its
equivalents in archaea. The model is restricted to ATP
subunit that is a part of the cobalt transporter, which
belongs to the ABC transporter superfamily (ATP Binding
Cassette). The model excludes ATP binding subunit that
are associated with other transporters belonging to ABC
transporter superfamily. This superfamily includes two
groups, one which catalyze the uptake of small
molecules, including ions from the external milieu and
the other group which is engaged in the efflux of small
molecular weight compounds and ions from within the
cell. Energy derived from the hydrolysis of ATP drive
the both the process of uptake and efflux [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 190
Score = 56.7 bits (137), Expect = 2e-09
Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 358 YKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYE- 416
Y G + + L + ++ LLG NGAGKST + L GL+ P SG IDG + Y
Sbjct: 1 YPGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSR 60
Query: 417 --MGKVRESLGLCPQ 429
+ + R+ +GL Q
Sbjct: 61 KGLLERRQRVGLVFQ 75
Score = 43.2 bits (102), Expect = 7e-05
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Query: 296 YKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSKDIVNASGIQL---- 351
Y G + + L + ++ LLG NGAGKST + L G R V G L
Sbjct: 1 YPGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSR 60
Query: 352 RGLTKIYKT 360
+GL + +
Sbjct: 61 KGLLERRQR 69
>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain
an N-terminal double-glycine peptidase domain [Defense
mechanisms].
Length = 709
Score = 59.5 bits (145), Expect = 2e-09
Identities = 23/101 (22%), Positives = 50/101 (49%), Gaps = 3/101 (2%)
Query: 349 IQLRGLTKIYKT-GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAY 407
I+ ++ Y +++L+L++ + ++G +G+GKST + +L GL P G
Sbjct: 472 IEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRIL 531
Query: 408 IDGHDI-WYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFA 447
+DG D+ ++ +R +G Q LF ++ +++
Sbjct: 532 LDGVDLNDIDLASLRRQVGYVLQDPFLFSG-SIRENIALGN 571
Score = 33.0 bits (76), Expect = 0.41
Identities = 10/38 (26%), Positives = 23/38 (60%)
Query: 299 GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGY 336
+++L+L++ + ++G +G+GKST + +L G
Sbjct: 485 DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGL 522
Score = 33.0 bits (76), Expect = 0.42
Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 44 IAGLIIPTSGTAYIDGHDI-WYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFA 96
+ GL P G +DG D+ ++ +R +G Q LF ++ +++
Sbjct: 519 LLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSG-SIRENIALGN 571
>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated
ATPase domains [General function prediction only].
Length = 530
Score = 59.2 bits (144), Expect = 2e-09
Identities = 31/129 (24%), Positives = 51/129 (39%), Gaps = 16/129 (12%)
Query: 317 VLLGHNGAGKSTTMSMLTGYKRKSKDIVNASGIQLRGLTKIYKTGKKAVDNLTLDMYQNQ 376
GK KR K + ++ ++K Y G+ + +L+ + +
Sbjct: 295 AEERPVEEGKPLAFRFPPPGKRLGKLV-----LEFENVSKGYDGGRLLLKDLSFRIDRGD 349
Query: 377 ITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQ-YDLLFE 435
++G NGAGKST + +L G + P SGT G + +G Q D L
Sbjct: 350 RIAIVGPNGAGKSTLLKLLAGELGPLSGT-VKVGETV---------KIGYFDQHRDELDP 399
Query: 436 ELTVEDHLQ 444
+ TV + L
Sbjct: 400 DKTVLEELS 408
Score = 52.3 bits (126), Expect = 3e-07
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYI 408
I L L+ Y + ++N++L + + L+G NGAGKST + +L G + P SG
Sbjct: 4 ITLENLSLAY-GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTR 62
Query: 409 DG 410
Sbjct: 63 PK 64
Score = 40.7 bits (96), Expect = 0.001
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 292 LTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
++K Y G+ + +L+ + + ++G NGAGKST + +L G
Sbjct: 327 VSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAG 370
Score = 39.9 bits (94), Expect = 0.003
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 292 LTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
L+ Y + ++N++L + + L+G NGAGKST + +L G
Sbjct: 9 LSLAY-GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAG 51
>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 275
Score = 57.4 bits (139), Expect = 3e-09
Identities = 35/102 (34%), Positives = 54/102 (52%), Gaps = 6/102 (5%)
Query: 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYI 408
++ R L Y G +A+ + + ++ LLG NGAGKST G++ PTSG I
Sbjct: 2 LETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLI 61
Query: 409 DGHDIWYE---MGKVRESLGLCPQY--DLLFEELTVEDHLQF 445
G I Y+ + +VR+++G+ Q D LF TVE+ + F
Sbjct: 62 KGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAP-TVEEDVAF 102
Score = 35.8 bits (83), Expect = 0.034
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Query: 296 YKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSKDIVNASGIQL---- 351
Y G +A+ + + ++ LLG NGAGKST G + + V G +
Sbjct: 11 YPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDK 70
Query: 352 RGLTKIYKT 360
+ L ++ KT
Sbjct: 71 KSLLEVRKT 79
>gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport
system, ATPase component [Carbohydrate transport and
metabolism / Cell envelope biogenesis, outer membrane].
Length = 249
Score = 56.9 bits (138), Expect = 3e-09
Identities = 21/64 (32%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Query: 349 IQLRGLTKIYKTGKK--AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTA 406
+L+GL K + + A+ +++ ++Y+ + ++GHNGAGKST + ++ G+ PTSG
Sbjct: 25 KRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKV 84
Query: 407 YIDG 410
+ G
Sbjct: 85 KVTG 88
Score = 41.4 bits (98), Expect = 5e-04
Identities = 13/48 (27%), Positives = 26/48 (54%)
Query: 288 VGFCLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
G A+ +++ ++Y+ + ++GHNGAGKST + ++ G
Sbjct: 28 KGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAG 75
>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 241
Score = 56.7 bits (137), Expect = 4e-09
Identities = 29/86 (33%), Positives = 52/86 (60%), Gaps = 2/86 (2%)
Query: 361 GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIW-YEMGK 419
GK+ + ++++ I ++G +GAGKST + ++ LI PT G+ IDG DI ++
Sbjct: 15 GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVID 74
Query: 420 VRESLGLCPQYDLLFEELTVEDHLQF 445
+R +G+ Q LFE TV+D++++
Sbjct: 75 LRRKIGMVFQQPHLFEG-TVKDNIEY 99
Score = 32.9 bits (75), Expect = 0.26
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 44 IAGLIIPTSGTAYIDGHDIW-YEMGKVRESLGLCPQYDLLFEELTVEDHLQF 94
I LI PT G+ IDG DI ++ +R +G+ Q LFE TV+D++++
Sbjct: 49 INRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEG-TVKDNIEY 99
Score = 29.8 bits (67), Expect = 3.0
Identities = 12/47 (25%), Positives = 25/47 (53%)
Query: 287 EVGFCLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSML 333
E+ F GK+ + ++++ I ++G +GAGKST + ++
Sbjct: 3 EIEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLI 49
>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 207
Score = 56.0 bits (136), Expect = 4e-09
Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 13/92 (14%)
Query: 367 NLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGL 426
L+ + + VL G NG+GK+T + ++ GL+ P +GT +DG DI + V E+
Sbjct: 20 GLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDI--DDPDVAEAC-- 75
Query: 427 CPQY----DLLFEELTVEDHLQFFAKGKEFNG 454
Y + + LTV ++L+F+A F G
Sbjct: 76 --HYLGHRNAMKPALTVAENLEFWA---AFLG 102
Score = 33.7 bits (78), Expect = 0.13
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 305 NLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
L+ + + VL G NG+GK+T + ++ G
Sbjct: 20 GLSFTLAAGEALVLTGPNGSGKTTLLRLIAG 50
Score = 32.9 bits (76), Expect = 0.20
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 10/58 (17%)
Query: 44 IAGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQY----DLLFEELTVEDHLQFFAK 97
IAGL+ P +GT +DG DI + V E+ Y + + LTV ++L+F+A
Sbjct: 48 IAGLLPPAAGTIKLDGGDI--DDPDVAEAC----HYLGHRNAMKPALTVAENLEFWAA 99
>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding
protein LsrA; Provisional.
Length = 510
Score = 57.8 bits (140), Expect = 5e-09
Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYI 408
+ R ++K Y +G + + + ++ ++ LLG NGAGKST M ++ G++ P SGT I
Sbjct: 12 LCARSISKQY-SGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEI 70
Query: 409 DGHDIWYEMGKVRESLG--LCPQYDLLFEELTVEDHLQF 445
G+ LG L PQ LLF L+V++++ F
Sbjct: 71 GGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILF 109
Score = 38.1 bits (89), Expect = 0.008
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 301 KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSKDIVNASGIQLRGLT 355
K +D TL + ++ LLG NGAGKST M ++ G + G LT
Sbjct: 28 KGID-FTL--HAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLT 79
Score = 29.6 bits (67), Expect = 3.6
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 44 IAGLIIPTSGTAYIDGHDIWYEMGKVRESLG--LCPQYDLLFEELTVEDHLQF 94
IAG++ P SGT I G+ LG L PQ LLF L+V++++ F
Sbjct: 57 IAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILF 109
Score = 29.6 bits (67), Expect = 3.7
Identities = 17/60 (28%), Positives = 28/60 (46%)
Query: 367 NLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGL 426
N++L++ +I L G GAG++ L GL G ++G +I R + GL
Sbjct: 281 NISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGL 340
>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB
family. Type I protein secretion is a system in some
Gram-negative bacteria to export proteins (often
proteases) across both inner and outer membranes to the
extracellular medium. This is one of three proteins of
the type I secretion apparatus. Targeted proteins are
not cleaved at the N-terminus, but rather carry signals
located toward the extreme C-terminus to direct type I
secretion. This model is related to models TIGR01842 and
TIGR01846, and to bacteriocin ABC transporters that
cleave their substrates during export [Protein fate,
Protein and peptide secretion and trafficking, Cellular
processes, Pathogenesis].
Length = 694
Score = 58.0 bits (141), Expect = 6e-09
Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Query: 349 IQLRGLTKIYK-TGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAY 407
I+ R ++ Y A+DN++L + + ++G G+GKST + +L GL PT G+
Sbjct: 464 IEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVL 523
Query: 408 IDGHDI-WYEMGKVRESLGLCPQYDLLF 434
+DG DI + +R ++G PQ LF
Sbjct: 524 LDGVDIRQIDPADLRRNIGYVPQDPRLF 551
Score = 34.5 bits (80), Expect = 0.13
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 44 IAGLIIPTSGTAYIDGHDI-WYEMGKVRESLGLCPQYDLLF 83
+ GL PT G+ +DG DI + +R ++G PQ LF
Sbjct: 511 LLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLF 551
Score = 29.1 bits (66), Expect = 5.9
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 299 GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
A+DN++L + + ++G G+GKST + +L G
Sbjct: 477 ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLG 513
>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms].
Length = 567
Score = 57.8 bits (140), Expect = 7e-09
Identities = 27/102 (26%), Positives = 51/102 (50%), Gaps = 2/102 (1%)
Query: 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYI 408
I+ ++ Y K + +++ + + ++G +G+GKST + +L L PTSG I
Sbjct: 329 IEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILI 388
Query: 409 DGHDIW-YEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAKG 449
DG DI + +R+ +G+ Q LLF T+ +++
Sbjct: 389 DGIDIRDISLDSLRKRIGIVSQDPLLFSG-TIRENIALGRPD 429
Score = 37.4 bits (87), Expect = 0.016
Identities = 13/64 (20%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
Query: 296 YKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSK-----DIVNASGIQ 350
Y K + +++ + + ++G +G+GKST + +L + D ++ I
Sbjct: 338 YPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDIS 397
Query: 351 LRGL 354
L L
Sbjct: 398 LDSL 401
Score = 30.1 bits (68), Expect = 2.6
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 44 IAGLIIPTSGTAYIDGHDIW-YEMGKVRESLGLCPQYDLLFEELTVEDHLQFF 95
+ L PTSG IDG DI + +R+ +G+ Q LLF T+ +++
Sbjct: 375 LLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSG-TIRENIALG 426
>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein.
[Transport and binding proteins, Anions].
Length = 237
Score = 56.0 bits (135), Expect = 8e-09
Identities = 28/82 (34%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 364 AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRES 423
A+D++ L++ + LLG +G+GKST + ++ GL P SG ++G D + R+
Sbjct: 15 ALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRK- 73
Query: 424 LGLCPQYDLLFEELTVEDHLQF 445
+G Q+ LF+ LTV D++ F
Sbjct: 74 IGFVFQHYALFKHLTVRDNIAF 95
Score = 34.8 bits (80), Expect = 0.063
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 44 IAGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQF 94
IAGL P SG ++G D + R+ +G Q+ LF+ LTV D++ F
Sbjct: 46 IAGLEQPDSGRIRLNGQDATRVHARDRK-IGFVFQHYALFKHLTVRDNIAF 95
Score = 31.7 bits (72), Expect = 0.64
Identities = 12/34 (35%), Positives = 23/34 (67%)
Query: 302 AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
A+D++ L++ + LLG +G+GKST + ++ G
Sbjct: 15 ALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAG 48
>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter. ABC transporters for a large
family of proteins responsible for translocation of a
variety of compounds across biological membranes. ABC
transporters are the largest family of proteins in many
completely sequenced bacteria. ABC transporters are
composed of two copies of this domain and two copies of
a transmembrane domain pfam00664. These four domains may
belong to a single polypeptide as in human CFTR, or
belong in different polypeptide chains.
Length = 119
Score = 53.1 bits (128), Expect = 8e-09
Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 389 STTMSMLTGLIIPTSGTAYIDGHDI--WYEMGKVRESLGLCPQYDLLFEELTVEDHLQFF 446
ST + ++TGL+ PTSGT +DG D +R+ +G+ Q LF ELTV ++L F
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 447 AKGKEFN 453
+ KE +
Sbjct: 61 LRDKEAD 67
Score = 44.2 bits (105), Expect = 1e-05
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 44 IAGLIIPTSGTAYIDGHDI--WYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAK 97
I GL+ PTSGT +DG D +R+ +G+ Q LF ELTV ++L F +
Sbjct: 7 ITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFGLR 62
>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding
protein SapF; Provisional.
Length = 267
Score = 56.0 bits (135), Expect = 1e-08
Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 8/75 (10%)
Query: 349 IQLRGLTKI--YKTG------KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLII 400
+++R L+K Y+TG +AV L+ + + Q ++G NG+GKST ML G+I
Sbjct: 5 LEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE 64
Query: 401 PTSGTAYIDGHDIWY 415
PTSG ID H + +
Sbjct: 65 PTSGELLIDDHPLHF 79
Score = 34.4 bits (79), Expect = 0.090
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 6/46 (13%)
Query: 296 YKTG------KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
Y+TG +AV L+ + + Q ++G NG+GKST ML G
Sbjct: 16 YRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAG 61
>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein;
Provisional.
Length = 501
Score = 56.5 bits (137), Expect = 1e-08
Identities = 24/61 (39%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 350 QLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYID 409
G+ K + G KA+D+++ D Q+ L+G NGAGKST + +L+G P +G+ ID
Sbjct: 6 SFDGIGKTFP-GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILID 64
Query: 410 G 410
G
Sbjct: 65 G 65
Score = 42.2 bits (100), Expect = 5e-04
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 295 IYKT--GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSKDIVNASGIQLR 352
I KT G KA+D+++ D Q+ L+G NGAGKST + +L+G + A I +
Sbjct: 10 IGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD-----AGSILID 64
Query: 353 GLTKIYKTGKKAVD 366
G + + A+
Sbjct: 65 GQEMRFASTTAALA 78
Score = 30.3 bits (69), Expect = 2.7
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 369 TLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGK--VRESLGL 426
+ + +I L G GAG+S M +L G T+G Y+DG I + +R + L
Sbjct: 273 SFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIML 332
Query: 427 CPQ 429
CP+
Sbjct: 333 CPE 335
>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the
molybdate transporter. Archaeal protein closely related
to ModC. ModC is an ABC-type transporter and the ATPase
component of a molybdate transport system that also
includes the periplasmic binding protein ModA and the
membrane protein ModB. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 235
Score = 55.0 bits (133), Expect = 1e-08
Identities = 27/97 (27%), Positives = 51/97 (52%), Gaps = 3/97 (3%)
Query: 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYI 408
+++ L+K +K K + N++L++ + V+LG G+GKS + + G I P SG +
Sbjct: 1 LKVENLSKDWKEFK--LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILL 58
Query: 409 DGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQF 445
+G DI + + + PQ LF +TV ++ +
Sbjct: 59 NGKDI-TNLPPEKRDISYVPQNYALFPHMTVYKNIAY 94
Score = 35.4 bits (82), Expect = 0.038
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 39 VFDDDIAGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQF 94
V + IAG I P SG ++G DI + + + PQ LF +TV ++ +
Sbjct: 40 VLLETIAGFIKPDSGKILLNGKDI-TNLPPEKRDISYVPQNYALFPHMTVYKNIAY 94
>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein
MsbA. This family consists of a single polypeptide
chain transporter in the ATP-binding cassette (ABC)
transporter family, MsbA, which exports lipid A. It may
also act in multidrug resistance. Lipid A, a part of
lipopolysaccharide, is found in the outer leaflet of the
outer membrane of most Gram-negative bacteria. Members
of this family are restricted to the Proteobacteria
(although lipid A is more broadly distributed) and often
are clustered with lipid A biosynthesis genes [Cell
envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides, Transport and
binding proteins, Other].
Length = 571
Score = 56.6 bits (137), Expect = 1e-08
Identities = 32/113 (28%), Positives = 57/113 (50%), Gaps = 15/113 (13%)
Query: 349 IQLRGLTKIYK-TGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAY 407
++ R +T Y + A+D+++L + + L+G +G+GKST ++++ P SG
Sbjct: 331 VEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQIL 390
Query: 408 IDGHDIW-YEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGR 459
+DGHD+ Y + +R + L Q +LF + T+ N I YGR
Sbjct: 391 LDGHDLADYTLASLRRQVALVSQDVVLFND-TI------------ANNIAYGR 430
Score = 35.8 bits (83), Expect = 0.048
Identities = 10/37 (27%), Positives = 24/37 (64%)
Query: 298 TGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLT 334
+ A+D+++L + + L+G +G+GKST ++++
Sbjct: 343 RDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIP 379
>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 223
Score = 54.5 bits (131), Expect = 2e-08
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 360 TGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDI-WYEMG 418
K ++N++L + + + G +G GKST + ++ LI PTSGT +G D+ +
Sbjct: 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPE 73
Query: 419 KVRESLGLCPQYDLLFEELTVEDHLQF 445
R+ + C Q LF + TVED+L F
Sbjct: 74 AYRQQVSYCAQTPALFGD-TVEDNLIF 99
Score = 36.4 bits (84), Expect = 0.021
Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 10/79 (12%)
Query: 24 ALTQP-GAMKDYIAGVVFDDDIAGLIIPTSGTAYIDGHDI-WYEMGKVRESLGLCPQYDL 81
A+T P G K +A LI PTSGT +G D+ + R+ + C Q
Sbjct: 33 AITGPSGCGKS-----TLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPA 87
Query: 82 LFEELTVEDHLQFFAKWRI 100
LF + TVED+L F W+I
Sbjct: 88 LFGD-TVEDNLIF--PWQI 103
>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c
biogenesis, ATPase component [Posttranslational
modification, protein turnover, chaperones].
Length = 209
Score = 54.2 bits (131), Expect = 2e-08
Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 3/95 (3%)
Query: 367 NLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGL 426
+L+ + + + G NGAGK+T + +L GL+ P +G Y G I ++L
Sbjct: 20 DLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLY 79
Query: 427 CPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRAL 461
+ ELT ++L F+ + F+G +
Sbjct: 80 LGHQPGIKTELTALENLHFW---QRFHGSGNAATI 111
Score = 34.2 bits (79), Expect = 0.080
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 305 NLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
+L+ + + + G NGAGK+T + +L G
Sbjct: 20 DLSFTLNAGEALQITGPNGAGKTTLLRILAG 50
Score = 31.1 bits (71), Expect = 0.93
Identities = 14/55 (25%), Positives = 25/55 (45%)
Query: 44 IAGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAKW 98
+AGL+ P +G Y G I ++L + ELT ++L F+ ++
Sbjct: 48 LAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTALENLHFWQRF 102
>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 55.1 bits (133), Expect = 2e-08
Identities = 38/117 (32%), Positives = 62/117 (52%), Gaps = 15/117 (12%)
Query: 349 IQLRGLTKIYKTG--KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTA 406
I+++ LT YK K +++++ + Q + ++GHNG+GKSTT+ ++ GL+ SG
Sbjct: 5 IEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQI 64
Query: 407 YIDGH-----DIWYEMGKVRESLGLCPQY-DLLFEELTVEDHLQFFAKGKEFNGITY 457
IDG ++W +R +G+ Q D F TVED + F G E GI +
Sbjct: 65 IIDGDLLTEENVW----DIRHKIGMVFQNPDNQFVGATVEDDVAF---GLENKGIPH 114
Score = 32.4 bits (74), Expect = 0.43
Identities = 11/33 (33%), Positives = 24/33 (72%)
Query: 303 VDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
+++++ + Q + ++GHNG+GKSTT+ ++ G
Sbjct: 23 LNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDG 55
>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex.
Length = 530
Score = 56.2 bits (136), Expect = 2e-08
Identities = 30/99 (30%), Positives = 54/99 (54%), Gaps = 2/99 (2%)
Query: 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAY 407
++LR L+ Y +D ++LD+ + +LG +G+GKST ++ L GL+ P G
Sbjct: 334 TLELRDLSAGYPGAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVT 393
Query: 408 IDGHDIW-YEMGKVRESLGLCPQYDLLFEELTVEDHLQF 445
+DG + + +VR + +C Q LF+ TV ++L+
Sbjct: 394 LDGVPVSSLDQDEVRRRVSVCAQDAHLFDT-TVRENLRL 431
Score = 33.5 bits (77), Expect = 0.28
Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 5/83 (6%)
Query: 256 AALYIEAVWPGSTGLPLPWYYPIQATYWLEGEVGFCLTKI---YKTGKKAVDNLTLDMYQ 312
AA I V + + P G+ L + Y +D ++LD+
Sbjct: 303 AAERIVEVLDAAGPVAEG-SAPAAGAV-GLGKPTLELRDLSAGYPGAPPVLDGVSLDLPP 360
Query: 313 NQITVLLGHNGAGKSTTMSMLTG 335
+ +LG +G+GKST ++ L G
Sbjct: 361 GERVAILGPSGSGKSTLLATLAG 383
>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 283
Score = 54.9 bits (132), Expect = 2e-08
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Query: 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYI 408
+++ L Y G A+ + +++ + ++T +LG NGAGKST L G++ P+SG
Sbjct: 6 LKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILF 65
Query: 409 DGHDIWYE---MGKVRESLGLCPQ 429
DG I Y + K+RES+G+ Q
Sbjct: 66 DGKPIDYSRKGLMKLRESVGMVFQ 89
Score = 36.7 bits (85), Expect = 0.017
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 296 YKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
Y G A+ + +++ + ++T +LG NGAGKST L G
Sbjct: 15 YSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNG 54
>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the
metal-type transporters. This family includes
transporters involved in the uptake of various metallic
cations such as iron, manganese, and zinc. The ATPases
of this group of transporters are very similar to
members of iron-siderophore uptake family suggesting
that they share a common ancestor. The best
characterized metal-type ABC transporters are the
YfeABCD system of Y. pestis, the SitABCD system of
Salmonella enterica serovar Typhimurium, and the SitABCD
transporter of Shigella flexneri. Moreover other
uncharacterized homologs of these metal-type
transporters are mainly found in pathogens like
Haemophilus or enteroinvasive E. coli isolates.
Length = 213
Score = 53.3 bits (129), Expect = 3e-08
Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 9/95 (9%)
Query: 350 QLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYID 409
++ LT Y G +++++ ++ + ++G NGAGKST + + GL+ PTSG+ +
Sbjct: 1 EVEDLTVSY-GGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVF 59
Query: 410 GHDIWYEMGKVRESLGLCPQ---YDLLFEELTVED 441
G + K R+ +G PQ D F ++V D
Sbjct: 60 G----KPLEKERKRIGYVPQRRSIDRDF-PISVRD 89
Score = 34.4 bits (80), Expect = 0.069
Identities = 10/37 (27%), Positives = 22/37 (59%)
Query: 299 GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
G +++++ ++ + ++G NGAGKST + + G
Sbjct: 11 GHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILG 47
>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation
factor 3, subfamily F. Elongation factor 3 (EF-3) is a
cytosolic protein required by fungal ribosomes for in
vitro protein synthesis and for in vivo growth. EF-3
stimulates the binding of the EF-1: GTP: aa-tRNA ternary
complex to the ribosomal A site by facilitated release
of the deacylated tRNA from the E site. The reaction
requires ATP hydrolysis. EF-3 contains two ATP
nucleotide binding sequence (NBS) motifs. NBSI is
sufficient for the intrinsic ATPase activity. NBSII is
essential for the ribosome-stimulated functions.
Length = 144
Score = 51.7 bits (125), Expect = 4e-08
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGT 405
I+L L+K Y GK + +++L + L+G NGAGKST + ++ G + P G
Sbjct: 1 IELENLSKTYG-GKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGI 56
Score = 39.7 bits (94), Expect = 6e-04
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 292 LTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
L+K Y GK + +++L + L+G NGAGKST + ++ G
Sbjct: 6 LSKTYG-GKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAG 48
>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of
iron-sulfur clusters transporter, subfamily C. ATM1 is
an ABC transporter that is expressed in the
mitochondria. Although the specific function of ATM1 is
unknown, its disruption results in the accumulation of
excess mitochondrial iron, loss of mitochondrial
cytochromes, oxidative damage to mitochondrial DNA, and
decreased levels of cytosolic heme proteins. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 236
Score = 53.4 bits (129), Expect = 5e-08
Identities = 25/98 (25%), Positives = 54/98 (55%), Gaps = 2/98 (2%)
Query: 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYI 408
I+ +T Y G+ + +++ + + ++G +G+GKST + +L +SG+ I
Sbjct: 1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILI 60
Query: 409 DGHDIW-YEMGKVRESLGLCPQYDLLFEELTVEDHLQF 445
DG DI + +R ++G+ PQ +LF + T+ ++++
Sbjct: 61 DGQDIREVTLDSLRRAIGVVPQDTVLFND-TIGYNIRY 97
Score = 33.4 bits (77), Expect = 0.18
Identities = 14/46 (30%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 50 PTSGTAYIDGHDIW-YEMGKVRESLGLCPQYDLLFEELTVEDHLQF 94
+SG+ IDG DI + +R ++G+ PQ +LF + T+ ++++
Sbjct: 53 VSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFND-TIGYNIRY 97
Score = 28.4 bits (64), Expect = 6.8
Identities = 9/38 (23%), Positives = 22/38 (57%)
Query: 296 YKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSML 333
Y G+ + +++ + + ++G +G+GKST + +L
Sbjct: 10 YDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLL 47
>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional.
Length = 222
Score = 53.0 bits (127), Expect = 6e-08
Identities = 31/99 (31%), Positives = 55/99 (55%), Gaps = 4/99 (4%)
Query: 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYI 408
I+ ++K Y G++A+ +T M ++ L GH+GAGKST + ++ G+ P++G +
Sbjct: 2 IRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWF 61
Query: 409 DGHDIW----YEMGKVRESLGLCPQYDLLFEELTVEDHL 443
GHDI E+ +R +G+ Q L + TV D++
Sbjct: 62 SGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNV 100
Score = 40.2 bits (94), Expect = 0.001
Identities = 18/49 (36%), Positives = 31/49 (63%)
Query: 292 LTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKS 340
++K Y G++A+ +T M ++ L GH+GAGKST + ++ G +R S
Sbjct: 7 VSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPS 55
>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 204
Score = 51.7 bits (125), Expect = 1e-07
Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 16/91 (17%)
Query: 366 DNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLG 425
L+ + ++ + G NGAGK++ + +L GL P +G G I + R+
Sbjct: 18 SGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPI----RRQRDEY- 72
Query: 426 LCPQYDLLF--------EELTVEDHLQFFAK 448
DLL+ ELT ++L+F+ +
Sbjct: 73 ---HQDLLYLGHQPGIKTELTALENLRFYQR 100
Score = 32.5 bits (75), Expect = 0.31
Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 16/62 (25%)
Query: 44 IAGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLF--------EELTVEDHLQFF 95
+AGL P +G G I + R+ DLL+ ELT ++L+F+
Sbjct: 47 LAGLARPDAGEVLWQGEPI----RRQRDEY----HQDLLYLGHQPGIKTELTALENLRFY 98
Query: 96 AK 97
+
Sbjct: 99 QR 100
Score = 28.2 bits (64), Expect = 6.9
Identities = 9/32 (28%), Positives = 18/32 (56%)
Query: 304 DNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
L+ + ++ + G NGAGK++ + +L G
Sbjct: 18 SGLSFTLNAGELVQIEGPNGAGKTSLLRILAG 49
>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase
component/photorepair protein PhrA [Inorganic ion
transport and metabolism].
Length = 257
Score = 52.3 bits (126), Expect = 1e-07
Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 11/99 (11%)
Query: 335 GYKRKSKDIVNASGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSM 394
K++ +N I+L+ ++ GKK + +L+ + + ++G NGAGK+T +S+
Sbjct: 18 EPKKRHPIEINEPLIELKNVSVRRN-GKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSL 76
Query: 395 LTGLIIPTSGTAYIDGHDIWYEMGKV------RESLGLC 427
LTG P+SG + G GK R+ +GL
Sbjct: 77 LTGEHPPSSGDVTLLGR----RFGKGETIFELRKRIGLV 111
Score = 39.6 bits (93), Expect = 0.002
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 299 GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKS 340
GKK + +L+ + + ++G NGAGK+T +S+LTG S
Sbjct: 43 GKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS 84
>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a
mitochondrial protein MTABC3 and related proteins.
MTABC3 (also known as ABCB6) is a mitochondrial
ATP-binding cassette protein involved in iron
homeostasis and one of four ABC transporters expressed
in the mitochondrial inner membrane, the other three
being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast
MDL1 (multidrug resistance-like protein 1) and MDL2
(multidrug resistance-like protein 2) transporters are
also included in this CD. MDL1 is an ATP-dependent
permease that acts as a high-copy suppressor of ATM1 and
is thought to have a role in resistance to oxidative
stress. Interestingly, subfamily B is more closely
related to the carboxyl-terminal component of subfamily
C than the two halves of ABCC molecules are with one
another.
Length = 238
Score = 51.8 bits (125), Expect = 2e-07
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 11/79 (13%)
Query: 363 KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDI------WYE 416
+ L+L + + L+G +G GKST +S+L PTSG +DG DI W
Sbjct: 17 PILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWL- 75
Query: 417 MGKVRESLGLCPQYDLLFE 435
R +GL Q +LF+
Sbjct: 76 ----RSQIGLVSQEPVLFD 90
Score = 32.1 bits (74), Expect = 0.43
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 301 KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSML 333
+ L+L + + L+G +G GKST +S+L
Sbjct: 17 PILKGLSLTIPPGKTVALVGSSGCGKSTVVSLL 49
Score = 29.4 bits (67), Expect = 3.5
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 11/41 (26%)
Query: 50 PTSGTAYIDGHDI------WYEMGKVRESLGLCPQYDLLFE 84
PTSG +DG DI W R +GL Q +LF+
Sbjct: 55 PTSGEILLDGVDIRDLNLRWL-----RSQIGLVSQEPVLFD 90
>gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding
subunit; Provisional.
Length = 356
Score = 52.5 bits (127), Expect = 2e-07
Identities = 22/64 (34%), Positives = 37/64 (57%)
Query: 347 SGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTA 406
+G++L+ + K Y + + + LD+ + VL+G +G GKST + M+ GL TSG
Sbjct: 2 AGLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEI 61
Query: 407 YIDG 410
+I G
Sbjct: 62 WIGG 65
Score = 33.7 bits (78), Expect = 0.18
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 292 LTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
+ K Y + + + LD+ + VL+G +G GKST + M+ G
Sbjct: 9 VRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAG 52
>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit;
Provisional.
Length = 351
Score = 52.4 bits (126), Expect = 2e-07
Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 3/66 (4%)
Query: 349 IQLRGLTKIYKTGKKAV-DNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAY 407
+ L+ +TK + G V DNL L + Q + LLG +G GK+T + ++ GL PT G +
Sbjct: 7 VVLKNITKRF--GSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIF 64
Query: 408 IDGHDI 413
IDG D+
Sbjct: 65 IDGEDV 70
Score = 30.8 bits (70), Expect = 1.6
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 299 GKKAV-DNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
G V DNL L + Q + LLG +G GK+T + ++ G
Sbjct: 17 GSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAG 54
>gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of
multidrug resistance-associated protein. The ABC
subfamily C is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resistance lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 221
Score = 51.3 bits (124), Expect = 2e-07
Identities = 24/90 (26%), Positives = 47/90 (52%), Gaps = 4/90 (4%)
Query: 349 IQLRGLTKIYKTGKKAV-DNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAY 407
I+ + ++ Y+ V N++ + + ++G G+GKS+ + L L+ +SG+
Sbjct: 3 IEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSIL 62
Query: 408 IDGHDIWYEMG--KVRESLGLCPQYDLLFE 435
IDG DI ++G +R + + PQ +LF
Sbjct: 63 IDGVDI-SKIGLHDLRSRISIIPQDPVLFS 91
Score = 32.5 bits (75), Expect = 0.35
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 47 LIIPTSGTAYIDGHDIWYEMG--KVRESLGLCPQYDLLFE 84
L+ +SG+ IDG DI ++G +R + + PQ +LF
Sbjct: 53 LVELSSGSILIDGVDI-SKIGLHDLRSRISIIPQDPVLFS 91
>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin
B, subfamily C. The ABC-transporter hemolysin B is a
central component of the secretion machinery that
translocates the toxin, hemolysin A, in a
Sec-independent fashion across both membranes of E.
coli. The hemolysin A (HlyA) transport machinery is
composed of the ATP-binding cassette (ABC) transporter
HlyB located in the inner membrane, hemolysin D (HlyD),
also anchored in the inner membrane, and TolC, which
resides in the outer membrane. HlyD apparently forms a
continuous channel that bridges the entire periplasm,
interacting with TolC and HlyB. This arrangement
prevents the appearance of periplasmic intermediates of
HlyA during substrate transport. Little is known about
the molecular details of HlyA transport, but it is
evident that ATP-hydrolysis by the ABC-transporter HlyB
is a necessary source of energy.
Length = 237
Score = 51.3 bits (123), Expect = 2e-07
Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 12/93 (12%)
Query: 349 IQLRGLTKIYKT-GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAY 407
I + YK G +DN++L + ++ ++G +G+GKST ++ +P +G
Sbjct: 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVL 60
Query: 408 IDGHDI------WYEMGKVRESLGLCPQYDLLF 434
+DGHD+ W R +G+ Q ++LF
Sbjct: 61 VDGHDLALADPAWL-----RRQVGVVLQENVLF 88
Score = 29.8 bits (67), Expect = 2.4
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 11/46 (23%)
Query: 44 IAGLIIPTSGTAYIDGHDI------WYEMGKVRESLGLCPQYDLLF 83
I +P +G +DGHD+ W R +G+ Q ++LF
Sbjct: 48 IQRFYVPENGRVLVDGHDLALADPAWL-----RRQVGVVLQENVLF 88
>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter,
ATP-binding protein. This ABC transporter ATP-binding
protein is found in a number of genomes in operon-like
contexts strongly suggesting a substrate specificity for
2-aminoethylphosphonate (2-AEP). The characterized
PhnSTUV system is absent in the genomes in which this
system is found. These genomes encode systems for the
catabolism of 2-AEP, making the need for a
2-AEP-specific transporter likely [Transport and binding
proteins, Amino acids, peptides and amines].
Length = 353
Score = 52.3 bits (126), Expect = 2e-07
Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 364 AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRES 423
A+ +++L + + + LLG +G GK+T + ++ GL T+GT Y G DI + R+
Sbjct: 19 ALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRD- 77
Query: 424 LGLCPQYDLLFEELTVEDHLQFFAKGK 450
G+ Q LF LTV D++ + K +
Sbjct: 78 YGIVFQSYALFPNLTVADNIAYGLKNR 104
Score = 34.6 bits (80), Expect = 0.094
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 44 IAGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQF 94
IAGL T+GT Y G DI + R+ G+ Q LF LTV D++ +
Sbjct: 50 IAGLERQTAGTIYQGGRDITRLPPQKRD-YGIVFQSYALFPNLTVADNIAY 99
Score = 29.2 bits (66), Expect = 5.4
Identities = 13/54 (24%), Positives = 29/54 (53%), Gaps = 8/54 (14%)
Query: 302 AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKS--------KDIVNAS 347
A+ +++L + + + LLG +G GK+T + ++ G +R++ +DI
Sbjct: 19 ALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLP 72
>gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 267
Score = 51.4 bits (123), Expect = 3e-07
Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 8/75 (10%)
Query: 349 IQLRGLTKIYKT-----GKK---AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLII 400
+++R L+K ++ ++ AV ++ + + Q ++G NG+GKST ML G+I
Sbjct: 5 LEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE 64
Query: 401 PTSGTAYIDGHDIWY 415
PTSG I+ H + +
Sbjct: 65 PTSGEILINDHPLHF 79
Score = 32.5 bits (74), Expect = 0.35
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 302 AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
AV ++ + + Q ++G NG+GKST ML G
Sbjct: 28 AVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAG 61
>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA. This
model describes the cyt c biogenesis protein encoded by
ccmA in bacteria. An exception is, an arabidopsis
protein. Quite likely this is encoded by an organelle.
Bacterial c-type cytocromes are located on the
periplasmic side of the cytoplasmic membrane. Several
gene products encoded in a locus designated as 'ccm' are
implicated in the transport and assembly of the
functional cytochrome C. This cluster includes genes:
ccmA;B;C;D;E;F;G and H. The posttranslational pathway
includes the transport of heme moiety, the secretion of
the apoprotein and the covalent attachment of the heme
with the apoprotein. The proteins ccmA and B represent
an ABC transporter; ccmC and D participate in heme
transfer to ccmE, which function as a periplasmic heme
chaperone. The presence of ccmF, G and H is suggested to
be obligatory for the final functional assembly of
cytochrome c [Protein fate, Protein and peptide
secretion and trafficking, Transport and binding
proteins, Other].
Length = 198
Score = 50.4 bits (121), Expect = 4e-07
Identities = 20/87 (22%), Positives = 40/87 (45%)
Query: 361 GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKV 420
+ + L+ + + + G NG GK+T + +L GL+ P SG +G + + +
Sbjct: 12 ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEP 71
Query: 421 RESLGLCPQYDLLFEELTVEDHLQFFA 447
++ L EL+ ++L F+A
Sbjct: 72 HRNILYLGHLPGLKPELSALENLHFWA 98
Score = 30.4 bits (69), Expect = 1.3
Identities = 13/53 (24%), Positives = 25/53 (47%)
Query: 44 IAGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFA 96
+AGL+ P SG +G + + + ++ L EL+ ++L F+A
Sbjct: 46 LAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSALENLHFWA 98
Score = 29.3 bits (66), Expect = 3.5
Identities = 9/37 (24%), Positives = 18/37 (48%)
Query: 299 GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
+ + L+ + + + G NG GK+T + +L G
Sbjct: 12 ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAG 48
>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding
protein. Members of this family are the ATP-binding
protein of the D-methionine ABC transporter complex.
Known members belong to the Proteobacteria.
Length = 343
Score = 51.4 bits (123), Expect = 4e-07
Identities = 34/98 (34%), Positives = 55/98 (56%), Gaps = 7/98 (7%)
Query: 349 IQLRGLTKIYKTGKK---AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGT 405
I+L +TK++ G K A++N++L + QI ++G +GAGKST + + L PTSG+
Sbjct: 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGS 61
Query: 406 AYIDGHDIWY----EMGKVRESLGLCPQYDLLFEELTV 439
+DG D+ E+ K R +G+ Q+ L TV
Sbjct: 62 VIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTV 99
Score = 34.9 bits (80), Expect = 0.086
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 292 LTKIYKTGKK---AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSKDIVNASG 348
+TK++ G K A++N++L + QI ++G +GAGKST + + +R + V G
Sbjct: 7 ITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDG 66
Query: 349 IQLRGLT 355
L L+
Sbjct: 67 QDLTTLS 73
>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 253
Score = 51.0 bits (123), Expect = 4e-07
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLI--IP---TS 403
I++R L Y K A+ ++ LD+ +N++T L+G +G GKST + L + IP
Sbjct: 8 IEVRDLNLYYGD-KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVE 66
Query: 404 GTAYIDGHDI 413
G +DG +I
Sbjct: 67 GEVLLDGKNI 76
Score = 42.5 bits (101), Expect = 2e-04
Identities = 15/39 (38%), Positives = 26/39 (66%)
Query: 295 IYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSML 333
+Y K A+ ++ LD+ +N++T L+G +G GKST + L
Sbjct: 15 LYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCL 53
>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein
YbbL; Provisional.
Length = 225
Score = 50.1 bits (120), Expect = 6e-07
Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 358 YKTG-KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIW-Y 415
Y G K ++N++ + + ++ G +G GKST + ++ LI PTSGT +G DI
Sbjct: 15 YLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTL 74
Query: 416 EMGKVRESLGLCPQYDLLFEELTVEDHLQF 445
+ R+ + C Q LF + TV D+L F
Sbjct: 75 KPEIYRQQVSYCAQTPTLFGD-TVYDNLIF 103
Score = 34.3 bits (79), Expect = 0.081
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 44 IAGLIIPTSGTAYIDGHDIW-YEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAKWRI 100
+A LI PTSGT +G DI + R+ + C Q LF + TV D+L F W+I
Sbjct: 53 VASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGD-TVYDNLIF--PWQI 107
>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein;
Provisional.
Length = 501
Score = 51.2 bits (123), Expect = 7e-07
Identities = 22/50 (44%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
Query: 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGL 398
+QL+G+ K + G KA+ L++Y ++ L+G NGAGKST M +LTG+
Sbjct: 5 LQLKGIDKAFP-GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGI 53
Score = 49.6 bits (119), Expect = 2e-06
Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 292 LTKIYKT--GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG-YKRKSKDIV 344
L I K G KA+ L++Y ++ L+G NGAGKST M +LTG Y R + I+
Sbjct: 7 LKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSIL 62
Score = 30.7 bits (70), Expect = 1.8
Identities = 15/49 (30%), Positives = 30/49 (61%)
Query: 365 VDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDI 413
V++++ + + +I + G GAG++ M +L G + TSG +DGH++
Sbjct: 268 VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEV 316
>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 316
Score = 50.3 bits (121), Expect = 9e-07
Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 8/73 (10%)
Query: 349 IQLRGLTKIYKTGK---KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIP---- 401
++++ L+ + T KAVD ++ ++ + +I ++G +G+GKS + GL+
Sbjct: 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNAR 61
Query: 402 -TSGTAYIDGHDI 413
G DG D+
Sbjct: 62 IVGGEILFDGKDL 74
Score = 38.3 bits (90), Expect = 0.007
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 292 LTKIYKTGK---KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSKDIVNASG 348
L+ + T KAVD ++ ++ + +I ++G +G+GKS + G K +
Sbjct: 7 LSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGE 66
Query: 349 IQLRG 353
I G
Sbjct: 67 ILFDG 71
>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter,
ATP-binding protein. This small clade of ABC-type
transporter ATP-binding protein components is found as a
three gene cassette along with a periplasmic
substrate-binding protein (TIGR03868) and a permease
(TIGR03869). The organisms containing this cassette are
all Actinobacteria and all contain numerous genes
requiring the coenzyme F420. This model was defined
based on five such organisms, four of which are lacking
all F420 biosynthetic capability save the final
side-chain polyglutamate attachment step (via the gene
cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and
marine actinobacterium PHSC20C1 this cassette is in an
apparent operon with the cofE gene and, in PHSC20C1,
also with a F420-dependent glucose-6-phosphate
dehydrogenase (TIGR03554). Based on these observations
we propose that this ATP-binding protein is a component
of an F420-0 (that is, F420 lacking only the
polyglutamate tail) transporter.
Length = 256
Score = 49.4 bits (118), Expect = 1e-06
Identities = 20/53 (37%), Positives = 31/53 (58%)
Query: 361 GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDI 413
G+ VD + + +T LLG NG+GKST + +L G + P +GT + G D+
Sbjct: 13 GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDL 65
Score = 42.5 bits (100), Expect = 2e-04
Identities = 21/58 (36%), Positives = 33/58 (56%)
Query: 299 GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSKDIVNASGIQLRGLTK 356
G+ VD + + +T LLG NG+GKST + +L G R V+ +G+ L GL++
Sbjct: 13 GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSR 70
>gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette
domain 2 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI's are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLI's have an N-terminal Fe-S domain and
two nucleotide-binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity of more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 246
Score = 49.3 bits (118), Expect = 1e-06
Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 16/91 (17%)
Query: 358 YKTGKKAVDNLTL-----DMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHD 412
Y T KK + TL + ++++ +LG NG GK+T + ML G++ P G I+
Sbjct: 3 YPTMKKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDT 62
Query: 413 IWYEMGKVRESLGLCPQYDLLFEELTVEDHL 443
+ Y+ PQY E TV D L
Sbjct: 63 VSYK-----------PQYIKADYEGTVRDLL 82
Score = 35.5 bits (82), Expect = 0.038
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
Query: 296 YKTGKKAVDNLTL-----DMYQNQITVLLGHNGAGKSTTMSMLTG 335
Y T KK + TL + ++++ +LG NG GK+T + ML G
Sbjct: 3 YPTMKKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAG 47
>gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in
Fe-S cluster assembly, ATPase component. Biosynthesis
of iron-sulfur clusters (Fe-S) depends on multi-protein
systems. The SUF system of E. coli and Erwinia
chrysanthemi is important for Fe-S biogenesis under
stressful conditions. The SUF system is made of six
proteins: SufC is an atypical cytoplasmic ABC-ATPase,
which forms a complex with SufB and SufD; SufA plays the
role of a scaffold protein for assembly of iron-sulfur
clusters and delivery to target proteins; SufS is a
cysteine desulfurase which mobilizes the sulfur atom
from cysteine and provides it to the cluster; SufE has
no associated function yet.
Length = 200
Score = 48.7 bits (117), Expect = 1e-06
Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 10/100 (10%)
Query: 361 GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGL--IIPTSGTAYIDGHDIW---- 414
GK+ + + L + + ++ L+G NG+GKST + G T G G DI
Sbjct: 12 GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPP 71
Query: 415 YEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAKGKEFNG 454
E + R + L QY + D L++ +G F+G
Sbjct: 72 EE--RARLGIFLAFQYPPEIPGVKNADFLRYVNEG--FSG 107
Score = 36.0 bits (84), Expect = 0.020
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 299 GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
GK+ + + L + + ++ L+G NG+GKST + G
Sbjct: 12 GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMG 48
>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC
transporter, lactococcin 972 group. A gene pair with a
fairly wide distribution consists of a polypeptide
related to the lactococcin 972 (see TIGR01653) and
multiple-membrane-spanning putative immunity protein
(see TIGR01654). This model represents a small clade
within the ABC transporters that regularly are found
adjacent to these bacteriocin system gene pairs and are
likely serve as export proteins [Cellular processes,
Toxin production and resistance, Transport and binding
proteins, Unknown substrate].
Length = 206
Score = 48.4 bits (116), Expect = 1e-06
Identities = 31/109 (28%), Positives = 56/109 (51%), Gaps = 6/109 (5%)
Query: 351 LRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDG 410
L+ ++K + K +D+L L + + ++ ++G +G+GKST ++++ L SG Y++G
Sbjct: 1 LKNISKKFG-DKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNG 59
Query: 411 HDIWYEMGK-----VRESLGLCPQYDLLFEELTVEDHLQFFAKGKEFNG 454
+ K RE LG Q L E TVE++L K K+ +
Sbjct: 60 QETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSK 108
Score = 31.0 bits (71), Expect = 0.91
Identities = 11/42 (26%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 292 LTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSML 333
++K + K +D+L L + + ++ ++G +G+GKST ++++
Sbjct: 4 ISKKFG-DKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNII 44
>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 252
Score = 49.2 bits (118), Expect = 1e-06
Identities = 22/65 (33%), Positives = 42/65 (64%), Gaps = 3/65 (4%)
Query: 349 IQLRGLTKIYKTGKK---AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGT 405
+ +R L+ +Y GK A++N++L++ + + ++G +G+GKST +L GL P+SG+
Sbjct: 4 LSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGS 63
Query: 406 AYIDG 410
+DG
Sbjct: 64 ILLDG 68
Score = 34.2 bits (79), Expect = 0.11
Identities = 15/50 (30%), Positives = 32/50 (64%), Gaps = 3/50 (6%)
Query: 292 LTKIYKTGKK---AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKR 338
L+ +Y GK A++N++L++ + + ++G +G+GKST +L G ++
Sbjct: 9 LSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEK 58
>gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding
protein. This model represents the ATP-binding protein
of a family of ABC transporters for inorganic phosphate.
In the model species Escherichia coli, a constitutive
transporter for inorganic phosphate, with low affinity,
is also present. The high affinity transporter that
includes this polypeptide is induced when extracellular
phosphate concentrations are low. The proteins most
similar to the members of this family but not included
appear to be amino acid transporters [Transport and
binding proteins, Anions].
Length = 247
Score = 48.8 bits (117), Expect = 2e-06
Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKST---TMSMLTGLI--IPTS 403
I++ L Y K+A+ N+ LD+ +NQ+T L+G +G GKST +++ + L+ +
Sbjct: 2 IEIENLNLFY-GEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIE 60
Query: 404 GTAYIDGHDI 413
G DG DI
Sbjct: 61 GKVLFDGQDI 70
Score = 41.9 bits (99), Expect = 3e-04
Identities = 15/35 (42%), Positives = 25/35 (71%)
Query: 294 KIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKST 328
++ K+A+ N+ LD+ +NQ+T L+G +G GKST
Sbjct: 8 NLFYGEKEALKNINLDIPKNQVTALIGPSGCGKST 42
>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding
subunit; Provisional.
Length = 400
Score = 49.6 bits (118), Expect = 2e-06
Identities = 40/113 (35%), Positives = 61/113 (53%), Gaps = 12/113 (10%)
Query: 352 RGLTK---IYKTGKK-AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAY 407
+GL+K + KTG V + +L + + +I V++G +G+GKST + +L LI PT G
Sbjct: 27 QGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVL 86
Query: 408 IDGHDIW----YEMGKV-RESLGLCPQYDLLFEELTVEDHLQFFAKGKEFNGI 455
IDG DI E+ +V R+ + + Q L +TV D+ F G E GI
Sbjct: 87 IDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAF---GMELAGI 136
>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE.
This family represents the NikE subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 265
Score = 49.0 bits (117), Expect = 2e-06
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 8/75 (10%)
Query: 347 SGIQLRGLTKIYKTG--------KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGL 398
S +++R +T Y+TG + N++L + + + LLG +G GKST +L GL
Sbjct: 1 SLLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGL 60
Query: 399 IIPTSGTAYIDGHDI 413
P GT G D+
Sbjct: 61 EKPAQGTVSFRGQDL 75
Score = 38.6 bits (90), Expect = 0.004
Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 11/82 (13%)
Query: 292 LTKIYKTG--------KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSKDI 343
+T Y+TG + N++L + + + LLG +G GKST +L G ++ ++
Sbjct: 8 VTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGT 67
Query: 344 VNASGIQLRGLTKIYKTGKKAV 365
V+ G L ++ + ++A
Sbjct: 68 VSFRGQD---LYQLDRKQRRAF 86
>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding
protein; Provisional.
Length = 265
Score = 48.8 bits (116), Expect = 2e-06
Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 5/107 (4%)
Query: 346 ASGIQLRGLTKIYKTGKKAV-DNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSG 404
S +LRG GK V +NLT+++ T ++G NG GKST + L+ L+ P G
Sbjct: 3 ESVARLRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHG 62
Query: 405 TAYIDGHDIW-YEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAKGK 450
++DG I Y +V +GL Q ++TV+ + A+G+
Sbjct: 63 HVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQ---ELVARGR 106
Score = 29.6 bits (66), Expect = 3.1
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 299 GKKAV-DNLTLDMYQNQITVLLGHNGAGKSTTMSMLT 334
GK V +NLT+++ T ++G NG GKST + L+
Sbjct: 18 GKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLS 54
>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein;
Provisional.
Length = 252
Score = 48.2 bits (115), Expect = 3e-06
Identities = 24/71 (33%), Positives = 45/71 (63%), Gaps = 6/71 (8%)
Query: 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLT--GLIIP---TS 403
+Q+ L+ +Y KKA+++++LD Y N+IT L+G +G+GKST + + + P +
Sbjct: 6 LQVSDLS-VYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTIT 64
Query: 404 GTAYIDGHDIW 414
G+ +GH+I+
Sbjct: 65 GSIVYNGHNIY 75
Score = 42.8 bits (101), Expect = 2e-04
Identities = 17/34 (50%), Positives = 27/34 (79%)
Query: 295 IYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKST 328
+Y KKA+++++LD Y N+IT L+G +G+GKST
Sbjct: 13 VYYNKKKALNSVSLDFYPNEITALIGPSGSGKST 46
>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG
transporter subfamily. The White subfamily represents
ABC transporters homologous to the Drosophila white
gene, which acts as a dimeric importer for eye pigment
precursors. The eye pigmentation of Drosophila is
developed from the synthesis and deposition in the cells
of red pigments, which are synthesized from guanine, and
brown pigments, which are synthesized from tryptophan.
The pigment precursors are encoded by the white, brown,
and scarlet genes, respectively. Evidence from genetic
and biochemical studies suggest that the White and Brown
proteins function as heterodimers to import guanine,
while the White and Scarlet proteins function to import
tryptophan. However, a recent study also suggests that
White may be involved in the transport of a metabolite,
such as 3-hydroxykynurenine, across intracellular
membranes. Mammalian ABC transporters belonging to the
White subfamily (ABCG1, ABCG5, and ABCG8) have been
shown to be involved in the regulation of
lipid-trafficking mechanisms in macrophages,
hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8),
the human homolog of the Drosophila white gene is
induced in monocyte-derived macrophages during
cholesterol influx mediated by acetylated low-density
lipoprotein. It is possible that human ABCG1 forms
heterodimers with several heterologous partners.
Length = 226
Score = 48.0 bits (115), Expect = 3e-06
Identities = 21/90 (23%), Positives = 46/90 (51%), Gaps = 5/90 (5%)
Query: 362 KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIP---TSGTAYIDGHDIWYEMG 418
+ +++++L + Q+ +LG +G+GK+T + ++G + TSG +G +
Sbjct: 20 ARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPR--KPD 77
Query: 419 KVRESLGLCPQYDLLFEELTVEDHLQFFAK 448
+ ++ + Q D+L LTV + L + A
Sbjct: 78 QFQKCVAYVRQDDILLPGLTVRETLTYTAI 107
Score = 33.4 bits (77), Expect = 0.15
Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 8/72 (11%)
Query: 33 DYIAGVVFDDDIAGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHL 92
D I+G V TSG +G + + ++ + Q D+L LTV + L
Sbjct: 51 DAISGRVEGGGT------TSGQILFNGQPR--KPDQFQKCVAYVRQDDILLPGLTVRETL 102
Query: 93 QFFAKWRITYSS 104
+ A R+ S
Sbjct: 103 TYTAILRLPRKS 114
Score = 30.3 bits (69), Expect = 1.5
Identities = 12/51 (23%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 285 EGEVGFCLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
+VG K + +++++L + Q+ +LG +G+GK+T + ++G
Sbjct: 6 WWDVGLKAKNWNKY-ARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISG 55
>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D.
This model describes the ATP binding subunits of nitrate
transport in bacteria and archaea. This protein belongs
to the ATP-binding cassette (ABC) superfamily. It is
thought that the two subunits encoded by ntrC and ntrD
form the binding surface for interaction with ATP. This
model is restricted in identifying ATP binding subunit
associated with the nitrate transport. Nitrate
assimilation is aided by other proteins derived from the
operon which among others include products of ntrA - a
regulatory protein; ntrB - a hydropbobic transmembrane
permease and narB - a reductase [Transport and binding
proteins, Anions, Transport and binding proteins,
Other].
Length = 230
Score = 47.8 bits (114), Expect = 3e-06
Identities = 18/49 (36%), Positives = 31/49 (63%)
Query: 365 VDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDI 413
+ + L + Q + L+GH+G GKST +++++GL PTSG ++G I
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQI 49
Score = 35.1 bits (81), Expect = 0.055
Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 303 VDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSKDIVNASGIQLRG 353
+ + L + Q + L+GH+G GKST +++++G + + + G+ L G
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPT-----SGGVILEG 46
>gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 289
Score = 48.5 bits (115), Expect = 3e-06
Identities = 30/92 (32%), Positives = 52/92 (56%), Gaps = 11/92 (11%)
Query: 363 KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRE 422
KA++N +L +N++T ++G G+GKST + + GLII +G + + I + K++E
Sbjct: 25 KALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84
Query: 423 ------SLGLC---PQYDLLFEELTVEDHLQF 445
+GL P+Y LF+E T+E + F
Sbjct: 85 VKRLRKEIGLVFQFPEYQ-LFQE-TIEKDIAF 114
Score = 34.2 bits (78), Expect = 0.13
Identities = 13/35 (37%), Positives = 24/35 (68%)
Query: 301 KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
KA++N +L +N++T ++G G+GKST + + G
Sbjct: 25 KALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNG 59
>gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 258
Score = 48.2 bits (115), Expect = 3e-06
Identities = 18/76 (23%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGT-AY 407
+ + GL+K+Y K +++ D+Y ++ ++G +G+GK+T + ++G + P +GT Y
Sbjct: 7 LSVSGLSKLY-GPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTY 65
Query: 408 IDGHDIWYEMGKVRES 423
++ + E+
Sbjct: 66 RMRDGQPRDLYTMSEA 81
Score = 34.0 bits (78), Expect = 0.14
Identities = 12/44 (27%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 292 LTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
L+K+Y K +++ D+Y ++ ++G +G+GK+T + ++G
Sbjct: 12 LSKLY-GPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISG 54
>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease
protein; Provisional.
Length = 648
Score = 49.0 bits (117), Expect = 4e-06
Identities = 23/68 (33%), Positives = 45/68 (66%), Gaps = 3/68 (4%)
Query: 349 IQLRGLTKIYKTGKKAVD---NLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGT 405
++L+ + + Y +G++ V+ ++LD+Y ++ ++G +G+GKST M++L L PTSGT
Sbjct: 5 LELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGT 64
Query: 406 AYIDGHDI 413
+ G D+
Sbjct: 65 YRVAGQDV 72
Score = 31.2 bits (71), Expect = 1.3
Identities = 14/41 (34%), Positives = 29/41 (70%), Gaps = 3/41 (7%)
Query: 296 YKTGKKAVD---NLTLDMYQNQITVLLGHNGAGKSTTMSML 333
Y +G++ V+ ++LD+Y ++ ++G +G+GKST M++L
Sbjct: 14 YPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNIL 54
>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 286
Score = 48.2 bits (115), Expect = 4e-06
Identities = 30/111 (27%), Positives = 56/111 (50%), Gaps = 12/111 (10%)
Query: 349 IQLRGLTKIYKTG----KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSG 404
I+ ++ Y+ G +A+ ++ + Q + ++G G+GKST + + L+ PT+G
Sbjct: 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTG 62
Query: 405 TAYIDGHDIWY-----EMGKVRESLGLCPQY--DLLFEELTVEDHLQFFAK 448
T +D I + + VR+ +G+ Q+ LFE+ TVE + F K
Sbjct: 63 TVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFED-TVEREIIFGPK 112
Score = 31.7 bits (72), Expect = 0.84
Identities = 14/69 (20%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Query: 292 LTKIYKTG----KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSKDIVNAS 347
++ Y+ G +A+ ++ + Q + ++G G+GKST + + + + V
Sbjct: 8 VSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVD 67
Query: 348 GIQLRGLTK 356
I + TK
Sbjct: 68 DITITHKTK 76
>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 48.0 bits (114), Expect = 4e-06
Identities = 29/96 (30%), Positives = 53/96 (55%), Gaps = 9/96 (9%)
Query: 358 YKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGL--IIP---TSGTAYIDGHD 412
Y KKAV N+T+ +++NQIT ++G +G GK+T + + + IP G Y G D
Sbjct: 12 YYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQD 71
Query: 413 IW---YEMGKVRESLGLCPQYDLLFEELTVEDHLQF 445
I+ ++ + R+ +G+ Q F +++ D++ F
Sbjct: 72 IYDPQLDVTEYRKKVGMVFQKPTPF-PMSIYDNVAF 106
Score = 43.4 bits (102), Expect = 1e-04
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 11/78 (14%)
Query: 296 YKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSKDIVNASGIQLRGLT 355
Y KKAV N+T+ +++NQIT ++G +G GK+T +L R + I G ++ G
Sbjct: 12 YYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTT---LLRSINRMNDHI---PGFRVEG-- 63
Query: 356 KIYKTGK---KAVDNLTL 370
KIY G+ ++T
Sbjct: 64 KIYFKGQDIYDPQLDVTE 81
>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 592
Score = 48.6 bits (116), Expect = 6e-06
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 346 ASG-IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSG 404
SG I + ++ Y+ + N+ L + L+GH G+GKST S+L G T G
Sbjct: 337 QSGRIDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEG 396
Query: 405 TAYIDGH 411
+DG
Sbjct: 397 EIRLDGR 403
Score = 37.4 bits (87), Expect = 0.018
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 292 LTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGY 336
++ Y+ + N+ L + L+GH G+GKST S+L GY
Sbjct: 346 VSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGY 390
>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed.
Length = 251
Score = 47.4 bits (113), Expect = 6e-06
Identities = 16/44 (36%), Positives = 29/44 (65%)
Query: 362 KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGT 405
++ + +++L++ +I LLG NGAGKST + ++ GL+ P G
Sbjct: 17 RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGV 60
Score = 34.3 bits (79), Expect = 0.090
Identities = 13/36 (36%), Positives = 25/36 (69%)
Query: 300 KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
++ + +++L++ +I LLG NGAGKST + ++ G
Sbjct: 17 RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLG 52
>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter
Associated with Antigen Processing, subfamily C. TAP
(Transporter Associated with Antigen Processing) is
essential for peptide delivery from the cytosol into the
lumen of the endoplasmic reticulum (ER), where these
peptides are loaded on major histocompatibility complex
(MHC) I molecules. Loaded MHC I leave the ER and display
their antigenic cargo on the cell surface to cytotoxic T
cells. Subsequently, virus-infected or malignantly
transformed cells can be eliminated. TAP belongs to the
large family of ATP-binding cassette (ABC) transporters,
which translocate a vast variety of solutes across
membranes.
Length = 226
Score = 46.7 bits (111), Expect = 7e-06
Identities = 22/91 (24%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Query: 367 NLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDI-WYEMGKVRESLG 425
+++ ++ ++T L+G +G+GKST +++L P G +DG I YE + +
Sbjct: 32 DVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVS 91
Query: 426 LCPQYDLLFEELTVEDHLQFFAKGKEFNGIT 456
L Q +LF +++D++ + + F +
Sbjct: 92 LVGQEPVLFAR-SLQDNIAYGLQSCSFECVK 121
Score = 33.2 bits (76), Expect = 0.19
Identities = 16/53 (30%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Query: 284 LEGEVGF-CLTKIYKT--GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSML 333
L+G V F +T Y T + +++ ++ ++T L+G +G+GKST +++L
Sbjct: 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALL 60
>gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component
[Amino acid transport and metabolism].
Length = 242
Score = 46.8 bits (111), Expect = 7e-06
Identities = 35/102 (34%), Positives = 56/102 (54%), Gaps = 8/102 (7%)
Query: 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYI 408
IQL G+ Y +A+ ++TLD + + VLLG +GAGKS+ + +L L +P SGT I
Sbjct: 3 IQLNGINCFYGA-HQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNI 61
Query: 409 DGH--DIWYEMG-----KVRESLGLCPQYDLLFEELTVEDHL 443
G+ D +R ++G+ Q L+ LTV+++L
Sbjct: 62 AGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENL 103
Score = 29.8 bits (67), Expect = 2.8
Identities = 14/33 (42%), Positives = 24/33 (72%)
Query: 301 KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSML 333
+A+ ++TLD + + VLLG +GAGKS+ + +L
Sbjct: 16 QALFDITLDCPEGETLVLLGPSGAGKSSLLRVL 48
>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 288
Score = 47.0 bits (111), Expect = 9e-06
Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 11/88 (12%)
Query: 363 KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDI-------WY 415
+A+ ++ L++ + T L+GH G+GKST + L GL+ PT G + DI
Sbjct: 20 RALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVG--DIVVSSTSKQK 77
Query: 416 EMGKVRESLGLCPQY--DLLFEELTVED 441
E+ VR+ +G+ Q+ LFEE ++D
Sbjct: 78 EIKPVRKKVGVVFQFPESQLFEETVLKD 105
Score = 33.6 bits (76), Expect = 0.21
Identities = 16/56 (28%), Positives = 31/56 (55%)
Query: 301 KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSKDIVNASGIQLRGLTK 356
+A+ ++ L++ + T L+GH G+GKST + L G + ++ V I + +K
Sbjct: 20 RALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSK 75
>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This
model describes ABC-type bacteriocin transporter. The
amino terminal domain (pfam03412) processes the
N-terminal leader peptide from the bacteriocin while
C-terminal domains resemble ABC transporter membrane
protein and ATP-binding cassette domain. In general,
bacteriocins are agents which are responsible for
killing or inhibiting the closely related species or
even different strains of the same species. Bacteriocins
are usually encoded by bacterial plasmids. Bacteriocins
are named after the species and hence in literature one
encounters various names e.g., leucocin from Leuconostic
geldium; pedicocin from Pedicoccus acidilactici; sakacin
from Lactobacillus sake etc [Protein fate, Protein and
peptide secretion and trafficking, Protein fate, Protein
modification and repair, Transport and binding proteins,
Other].
Length = 708
Score = 47.8 bits (114), Expect = 9e-06
Identities = 25/100 (25%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
Query: 337 KRKSKDIVNASG-IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSML 395
K+K ++ N +G I + ++ Y G + +++L + N T ++G +G+GKST +L
Sbjct: 461 KKKRTELNNLNGDIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLL 520
Query: 396 TGLIIPTSGTAYIDGHDIW-YEMGKVRESLGLCPQYDLLF 434
G SG ++G + + +R+ + PQ +F
Sbjct: 521 VGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIF 560
Score = 33.6 bits (77), Expect = 0.26
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 296 YKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGY 336
Y G + +++L + N T ++G +G+GKST +L G+
Sbjct: 483 YGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGF 523
>gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane
component/ATP-binding component; Provisional.
Length = 547
Score = 47.7 bits (114), Expect = 1e-05
Identities = 23/62 (37%), Positives = 37/62 (59%)
Query: 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYI 408
++LR +T Y+ +V + L + + ++ L+G NG+GKST +LTGL P SG +
Sbjct: 323 LELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILL 382
Query: 409 DG 410
DG
Sbjct: 383 DG 384
Score = 29.9 bits (68), Expect = 3.2
Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 296 YKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG-YKRKSKDI 343
Y+ +V + L + + ++ L+G NG+GKST +LTG Y+ +S +I
Sbjct: 332 YQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEI 380
>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system,
ATP-binding component PhnT. This ATP-binding component
of an ABC transport system is found in Salmonella and
Burkholderia lineages in the vicinity of enzymes for the
breakdown of 2-aminoethylphosphonate.
Length = 362
Score = 47.3 bits (112), Expect = 1e-05
Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 4/101 (3%)
Query: 347 SGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIP--TSG 404
GI++ L Y +D+L+L++ ++ L+G +G GK+T + + G + +G
Sbjct: 4 GGIRIDHLRVAYG-ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTG 62
Query: 405 TAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQF 445
I D+ + + L L Q LF L VED++ F
Sbjct: 63 RIAIADRDLTH-APPHKRGLALLFQNYALFPHLKVEDNVAF 102
Score = 28.8 bits (64), Expect = 6.8
Identities = 10/38 (26%), Positives = 23/38 (60%)
Query: 299 GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGY 336
+D+L+L++ ++ L+G +G GK+T + + G+
Sbjct: 17 ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGF 54
>gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and
permease components [Secondary metabolites biosynthesis,
transport, and catabolism / Inorganic ion transport and
metabolism].
Length = 546
Score = 47.5 bits (113), Expect = 1e-05
Identities = 22/67 (32%), Positives = 36/67 (53%)
Query: 347 SGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTA 406
++LR + Y+ V + L + + ++ L+G NG+GKST +LTGL P SG
Sbjct: 321 KTLELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEI 380
Query: 407 YIDGHDI 413
+DG +
Sbjct: 381 LLDGKPV 387
Score = 31.3 bits (71), Expect = 1.3
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 305 NLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSK 341
NLT+ + ++ L+G NG+GKST +LTG +
Sbjct: 343 NLTI--KRGELVFLIGGNGSGKSTLAMLLTGLYQPQS 377
>gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug
resistance-like (PDR) subfamily G of ATP-binding
cassette transporters. The pleiotropic drug resistance
(PDR) is a well-described phenomenon occurring in fungi
and shares several similarities with processes in
bacteria and higher eukaryotes. This PDR subfamily
represents domain I of its (ABC-IM)2 organization. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds
including sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 192
Score = 45.7 bits (109), Expect = 1e-05
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 13/80 (16%)
Query: 375 NQITVLLGHNGAGKSTTMSML-----TGLIIPTSGTAYIDGHDIWYEMGK-VRESLGLCP 428
+T L+G +GAGK+T + +L G+I +G I+G + K + S G
Sbjct: 33 GTLTALMGESGAGKTTLLDVLAGRKTAGVI---TGEILING----RPLDKNFQRSTGYVE 85
Query: 429 QYDLLFEELTVEDHLQFFAK 448
Q D+ LTV + L+F A
Sbjct: 86 QQDVHSPNLTVREALRFSAL 105
Score = 30.3 bits (69), Expect = 1.6
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 313 NQITVLLGHNGAGKSTTMSMLTGYK 337
+T L+G +GAGK+T + +L G K
Sbjct: 33 GTLTALMGESGAGKTTLLDVLAGRK 57
Score = 29.1 bits (66), Expect = 3.9
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 8/57 (14%)
Query: 44 IAGLIIPTSGTAYIDGHDIWYEMGK-VRESLGLCPQYDLLFEELTVEDHLQFFAKWR 99
AG+I +G I+G + K + S G Q D+ LTV + L+F A R
Sbjct: 58 TAGVI---TGEILING----RPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSALLR 107
>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family.
Members of this protein family have two copies of the
ABC transporter ATP-binding cassette, but are found
outside the common ABC transporter operon structure that
features integral membrane permease proteins and
substrate-binding proteins encoded next to the
ATP-binding cassette (ABC domain) protein. The member
protein ChvD from Agrobacterium tumefaciens was
identified as both a candidate to interact with VirB8,
based on yeast two-hybrid analysis, and as an apparent
regulator of VirG. The general function of this protein
family is unknown.
Length = 552
Score = 47.2 bits (113), Expect = 1e-05
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 10/70 (14%)
Query: 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGT--- 405
I+ L+K + K +D+L+ + I ++G NGAGKST M+TG P SGT
Sbjct: 323 IEAENLSKGFG-DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKI 381
Query: 406 ------AYID 409
AY+D
Sbjct: 382 GETVKLAYVD 391
Score = 39.9 bits (94), Expect = 0.002
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 12/91 (13%)
Query: 350 QLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYID 409
+ ++K+ K+ + +++L + +LG NGAGKST + ++ G+ +G A
Sbjct: 6 TMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEA--- 62
Query: 410 GHDIWYEMG-KVRESLGLCPQYDLLFEELTV 439
G KV G PQ L TV
Sbjct: 63 ----RPAPGIKV----GYLPQEPQLDPTKTV 85
Score = 38.0 bits (89), Expect = 0.011
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 292 LTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
L+K + K +D+L+ + I ++G NGAGKST M+TG
Sbjct: 328 LSKGFG-DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITG 370
Score = 35.3 bits (82), Expect = 0.067
Identities = 13/44 (29%), Positives = 26/44 (59%)
Query: 292 LTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
++K+ K+ + +++L + +LG NGAGKST + ++ G
Sbjct: 10 VSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAG 53
>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 282
Score = 46.3 bits (110), Expect = 1e-05
Identities = 29/103 (28%), Positives = 55/103 (53%), Gaps = 6/103 (5%)
Query: 349 IQLRGLTKIYKTGKK-AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTS---G 404
++ + ++ Y KK A+++++ + + T L+GHNG+GKST ++ GL++P
Sbjct: 6 VEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNS 65
Query: 405 TAYIDGHDIWYE-MGKVRESLGLCPQY-DLLFEELTVEDHLQF 445
+DG + + + +RE +G+ Q D F TV D + F
Sbjct: 66 KITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAF 108
Score = 36.3 bits (84), Expect = 0.026
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 296 YKTGKK-AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGY---KRKSKDIVNASGIQL 351
Y KK A+++++ + + T L+GHNG+GKST ++ G + GI L
Sbjct: 15 YPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITL 74
>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit;
Provisional.
Length = 506
Score = 46.8 bits (112), Expect = 1e-05
Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 5/65 (7%)
Query: 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPT---SGT 405
++++ +TK + G KA+DN++L + +I L G NGAGKST M +L+G + P G
Sbjct: 6 LEMKNITKTF-GGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSG-VYPHGTYEGE 63
Query: 406 AYIDG 410
+G
Sbjct: 64 IIFEG 68
Score = 42.6 bits (101), Expect = 3e-04
Identities = 22/43 (51%), Positives = 29/43 (67%), Gaps = 2/43 (4%)
Query: 295 IYKT--GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
I KT G KA+DN++L + +I L G NGAGKST M +L+G
Sbjct: 11 ITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSG 53
>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter
ATP-binding protein; Provisional.
Length = 491
Score = 47.0 bits (112), Expect = 1e-05
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 299 GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSKDIVNASGIQLRGLTKIY 358
G KA+DN+ L + + I L+G NGAGKST + L G +K ++ I +G +
Sbjct: 10 GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQK-----DSGSILFQGKEIDF 64
Query: 359 KTGKKAVDN 367
K+ K+A++N
Sbjct: 65 KSSKEALEN 73
Score = 45.5 bits (108), Expect = 4e-05
Identities = 23/59 (38%), Positives = 34/59 (57%)
Query: 361 GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGK 419
G KA+DN+ L + + I L+G NGAGKST + L G+ SG+ G +I ++ K
Sbjct: 10 GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSK 68
>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein;
Provisional.
Length = 250
Score = 45.8 bits (109), Expect = 2e-05
Identities = 26/89 (29%), Positives = 50/89 (56%), Gaps = 9/89 (10%)
Query: 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGL--IIP---TS 403
I ++ L ++ +A+ + LD+ +NQ+T L+G +G GKST + L + +IP
Sbjct: 4 ISVKDL-DLFYGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIE 62
Query: 404 GTAYIDGHDIW---YEMGKVRESLGLCPQ 429
G +DG DI+ ++ ++R+ +G+ Q
Sbjct: 63 GEVLLDGQDIYKSDIDVNQLRKRVGMVFQ 91
Score = 36.6 bits (85), Expect = 0.020
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 295 IYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKST 328
++ +A+ + LD+ +NQ+T L+G +G GKST
Sbjct: 11 LFYGDFQALKKINLDIEENQVTALIGPSGCGKST 44
>gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein
YrbF; Provisional.
Length = 269
Score = 45.9 bits (109), Expect = 2e-05
Identities = 28/105 (26%), Positives = 56/105 (53%), Gaps = 13/105 (12%)
Query: 349 IQLRGLTKIYKTGKKAV-DNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAY 407
+ +RG++ + G + + DN++L + + +IT ++G +G GK+T + ++ G I P G
Sbjct: 8 VDMRGVS--FTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEIL 65
Query: 408 IDGHDI-------WYEMGKVRESLGLCPQYDLLFEELTVEDHLQF 445
DG +I Y VR+ + + Q LF ++ V D++ +
Sbjct: 66 FDGENIPAMSRSRLYT---VRKRMSMLFQSGALFTDMNVFDNVAY 107
>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 45.4 bits (107), Expect = 3e-05
Identities = 30/100 (30%), Positives = 53/100 (53%), Gaps = 3/100 (3%)
Query: 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYI 408
I+L ++ Y G A++N+ L + + + ++G NG+GKST L GL+ P G +
Sbjct: 2 IRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLV 61
Query: 409 DGHDI--WYEMGKVRESLGLCPQY-DLLFEELTVEDHLQF 445
G D + ++ +R+ +G+ Q + F TVE+ L F
Sbjct: 62 SGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAF 101
Score = 36.9 bits (85), Expect = 0.015
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
Query: 296 YKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSKDIVNASGIQLRGLT 355
Y G A++N+ L + + + ++G NG+GKST L G R K V SGI +
Sbjct: 11 YPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFS 70
Query: 356 KIYKTGKKAVDNLTLDMYQNQITVLLG 382
K+ + + L ++QN T +G
Sbjct: 71 KL-----QGIRKLVGIVFQNPETQFVG 92
>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit;
Provisional.
Length = 233
Score = 44.8 bits (106), Expect = 4e-05
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 345 NASGIQLRGLTKIYKTGKKAVD---NLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIP 401
N +Q L K Y+ G D N++ + + ++ ++G +G+GKST + +L GL P
Sbjct: 2 NKILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTP 61
Query: 402 TSGTAYIDGH 411
TSG +G
Sbjct: 62 TSGDVIFNGQ 71
Score = 32.1 bits (73), Expect = 0.44
Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 7/87 (8%)
Query: 292 LTKIYKTGKKAVD---NLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSKDIVNASG 348
L K Y+ G D N++ + + ++ ++G +G+GKST + +L G + V +G
Sbjct: 11 LCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNG 70
Query: 349 IQLRGLTKIYKTGKKAVDNLTLD-MYQ 374
+ ++K+ K + N L +YQ
Sbjct: 71 ---QPMSKLSSAAKAELRNQKLGFIYQ 94
>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain
of the thiamine transport system. Part of the
binding-protein-dependent transport system tbpA-thiPQ
for thiamine and TPP. Probably responsible for the
translocation of thiamine across the membrane. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 44.0 bits (104), Expect = 4e-05
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 374 QNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLL 433
Q +IT ++G +G+GKST ++++ G P SG I+G D+ + + Q + L
Sbjct: 23 QGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTA-APPADRPVSMLFQENNL 81
Query: 434 FEELTVE 440
F LTVE
Sbjct: 82 FAHLTVE 88
Score = 29.4 bits (66), Expect = 3.0
Identities = 10/25 (40%), Positives = 20/25 (80%)
Query: 312 QNQITVLLGHNGAGKSTTMSMLTGY 336
Q +IT ++G +G+GKST ++++ G+
Sbjct: 23 QGEITAIVGPSGSGKSTLLNLIAGF 47
>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit;
Provisional.
Length = 242
Score = 44.2 bits (105), Expect = 5e-05
Identities = 35/102 (34%), Positives = 57/102 (55%), Gaps = 8/102 (7%)
Query: 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYI 408
IQL G+ Y +A+ ++TLD Q + VLLG +GAGKS+ + +L L +P SGT I
Sbjct: 3 IQLNGINCFYGA-HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNI 61
Query: 409 DGHDIWY-------EMGKVRESLGLCPQYDLLFEELTVEDHL 443
G+ + + ++R ++G+ Q L+ LTV+ +L
Sbjct: 62 AGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNL 103
Score = 28.4 bits (64), Expect = 7.2
Identities = 15/33 (45%), Positives = 24/33 (72%)
Query: 301 KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSML 333
+A+ ++TLD Q + VLLG +GAGKS+ + +L
Sbjct: 16 QALFDITLDCPQGETLVLLGPSGAGKSSLLRVL 48
>gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1,
subfamily C. Domain 2 of NFT1 (New full-length MRP-type
transporter 1). NFT1 belongs to the MRP (multidrug
resistance-associated protein) family of ABC
transporters. Some of the MRP members have five
additional transmembrane segments in their N-terminus,
but the function of these additional membrane-spanning
domains is not clear. The MRP was found in the
multidrug-resisting lung cancer cell in which
p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions such as
glutathione, glucuronate, and sulfate.
Length = 207
Score = 43.9 bits (104), Expect = 5e-05
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Query: 349 IQLRGLTKIYKTG-KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAY 407
I++ L+ Y + N++ + + ++G GAGKST + L + G
Sbjct: 7 IEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIE 66
Query: 408 IDGHDIWY-EMGKVRESLGLCPQYDLLF 434
IDG DI + +R SL + PQ LF
Sbjct: 67 IDGIDISTIPLEDLRSSLTIIPQDPTLF 94
Score = 30.1 bits (68), Expect = 1.9
Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 6/56 (10%)
Query: 29 GAMKDYIAGVVFDDDIAGLIIPTSGTAYIDGHDIWY-EMGKVRESLGLCPQYDLLF 83
GA K + +F + G IDG DI + +R SL + PQ LF
Sbjct: 44 GAGKSTLILALFR-----FLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLF 94
>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein.
This protein is related to a Proteobacterial ATP
transporter that exports lipid A and to eukaryotic
P-glycoproteins.
Length = 576
Score = 45.1 bits (107), Expect = 6e-05
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 363 KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIW-YEMGKVR 421
A+D L L + + L+G +GAGKST +L P SG +DG D+ + ++R
Sbjct: 354 PALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELR 413
Query: 422 ESLGLCPQYDLLF 434
+ L PQ +LF
Sbjct: 414 ARMALVPQDPVLF 426
Score = 30.1 bits (68), Expect = 3.1
Identities = 17/54 (31%), Positives = 26/54 (48%)
Query: 301 KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSKDIVNASGIQLRGL 354
A+D L L + + L+G +GAGKST +L + + G+ LR L
Sbjct: 354 PALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQL 407
>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein;
Reviewed.
Length = 556
Score = 45.1 bits (108), Expect = 7e-05
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 10/70 (14%)
Query: 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGT--- 405
I+ L+K + + +D+L+ + I ++G NGAGKST M+TG P SGT
Sbjct: 325 IEAENLSKSFG-DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKI 383
Query: 406 ------AYID 409
AY+D
Sbjct: 384 GETVKLAYVD 393
Score = 40.9 bits (97), Expect = 0.001
Identities = 30/113 (26%), Positives = 48/113 (42%), Gaps = 19/113 (16%)
Query: 350 QLRGLTKIYKTGKKAVDNLTLDMYQN-QITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYI 408
+ ++K+ K+ + +++L + +I VL G NGAGKST + ++ G+ G A
Sbjct: 8 TMNRVSKVVPPKKQILKDISLSFFPGAKIGVL-GLNGAGKSTLLRIMAGVDKEFEGEARP 66
Query: 409 -DGHDIWYEMGKVRESLGLCPQYDLLFEELTV----EDHLQ-FFAKGKEFNGI 455
G + G PQ L E TV E+ + A FN I
Sbjct: 67 APGIKV-----------GYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEI 108
Score = 35.1 bits (82), Expect = 0.076
Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 292 LTKIYKTGKKAVDNLTLDMYQN-QITVLLGHNGAGKSTTMSMLTG 335
++K+ K+ + +++L + +I VL G NGAGKST + ++ G
Sbjct: 12 VSKVVPPKKQILKDISLSFFPGAKIGVL-GLNGAGKSTLLRIMAG 55
Score = 35.1 bits (82), Expect = 0.086
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 303 VDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
+D+L+ + I ++G NGAGKST M+TG
Sbjct: 340 IDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITG 372
>gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase
[Posttranslational modification, protein turnover,
chaperones].
Length = 251
Score = 44.1 bits (105), Expect = 7e-05
Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 8/90 (8%)
Query: 361 GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGL--IIPTSGTAYIDGHDIW---- 414
K+ + + L + + ++ ++G NG+GKST + G T G DG DI
Sbjct: 16 KKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSP 75
Query: 415 YEMGKVRESLGLCPQYDLLFEELTVEDHLQ 444
E + R + L QY + +T D L+
Sbjct: 76 DE--RARAGIFLAFQYPVEIPGVTNSDFLR 103
Score = 33.7 bits (78), Expect = 0.16
Identities = 10/37 (27%), Positives = 21/37 (56%)
Query: 299 GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
K+ + + L + + ++ ++G NG+GKST + G
Sbjct: 16 KKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMG 52
>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette
domain of the molybdenum transport system. ModC is an
ABC-type transporter and the ATPase component of a
molybdate transport system that also includes the
periplasmic binding protein ModA and the membrane
protein ModB. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 214
Score = 43.4 bits (103), Expect = 7e-05
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 7/82 (8%)
Query: 376 QITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKV------RESLGLCPQ 429
++T + G +GAGKST + + GL P GT ++G + ++ K + +GL Q
Sbjct: 24 EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGT-VLFDSRKKINLPPQQRKIGLVFQ 82
Query: 430 YDLLFEELTVEDHLQFFAKGKE 451
LF L V ++L F K K
Sbjct: 83 QYALFPHLNVRENLAFGLKRKR 104
>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein.
Several bacterial species have enzymes xylose isomerase
and xylulokinase enzymes for xylose utilization. Members
of this protein family are the ATP-binding cassette
(ABC) subunit of the known or predicted high-affinity
xylose ABC transporter for xylose import. These genes,
which closely resemble other sugar transport ABC
transporter genes, typically are encoded near xylose
utilization enzymes and regulatory proteins. Note that
this form of the transporter contains two copies of the
ABC transporter domain (pfam00005) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 500
Score = 44.4 bits (105), Expect = 8e-05
Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 5/68 (7%)
Query: 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPT---SGT 405
++++G+ K + G KA+D + L++ + L G NGAGKST M +L+G + P G
Sbjct: 2 LEMKGIVKTFG-GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSG-VYPHGTWDGE 59
Query: 406 AYIDGHDI 413
Y G +
Sbjct: 60 IYWSGSPL 67
Score = 39.8 bits (93), Expect = 0.003
Identities = 20/43 (46%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Query: 295 IYKT--GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
I KT G KA+D + L++ + L G NGAGKST M +L+G
Sbjct: 7 IVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSG 49
>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system,
duplicated ATPase component [General function prediction
only].
Length = 534
Score = 44.6 bits (106), Expect = 8e-05
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 363 KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDI 413
+AVD ++L + + Q L+G +G+GKST L L IP+ G DG DI
Sbjct: 301 RAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRL-IPSQGEIRFDGQDI 350
Score = 35.7 bits (83), Expect = 0.054
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 8/73 (10%)
Query: 349 IQLRGLTKIYKTG---KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLI-----I 400
+ +R L+ + +AV ++ D+ + L+G +G+GKS T + GL+
Sbjct: 7 LSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAA 66
Query: 401 PTSGTAYIDGHDI 413
SG+ DG D+
Sbjct: 67 HPSGSILFDGEDL 79
Score = 33.8 bits (78), Expect = 0.22
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 301 KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
+AVD ++L + + Q L+G +G+GKST L
Sbjct: 301 RAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLR 335
Score = 32.6 bits (75), Expect = 0.42
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 13/68 (19%)
Query: 300 KKAVDNLTLDMYQNQITVLLGHNGAGKS-TTMSML-------TGYKRKS-----KDIVNA 346
+AV ++ D+ + L+G +G+GKS T +S+L + S +D++ A
Sbjct: 23 VEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAA 82
Query: 347 SGIQLRGL 354
S QLRG+
Sbjct: 83 SERQLRGV 90
>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein;
Provisional.
Length = 253
Score = 43.6 bits (103), Expect = 8e-05
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 6/68 (8%)
Query: 352 RGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGL--IIPTS---GTA 406
RGL+ + +A+ +++L+ QNQ+T L+G +G GKST + L + +IP + G
Sbjct: 10 RGLS-FFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEI 68
Query: 407 YIDGHDIW 414
+DG +I+
Sbjct: 69 LLDGENIY 76
Score = 37.8 bits (88), Expect = 0.007
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 295 IYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKST 328
+ +A+ +++L+ QNQ+T L+G +G GKST
Sbjct: 14 FFYGDFQALHDISLEFEQNQVTALIGPSGCGKST 47
>gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed.
Length = 402
Score = 44.4 bits (105), Expect = 8e-05
Identities = 17/49 (34%), Positives = 30/49 (61%)
Query: 365 VDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDI 413
+D + L + + + L+G NGAGK+T + + G + PT+GT + G D+
Sbjct: 19 LDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDV 67
>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd
biosynthesis, fused ATPase and permease components
[Energy production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 573
Score = 44.6 bits (106), Expect = 9e-05
Identities = 29/99 (29%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 349 IQLRGLTKIYKTGK-KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAY 407
++LR ++ Y + KA+ N L + Q + +LG +G+GKST + +L G P G+
Sbjct: 337 LELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSIT 396
Query: 408 IDGHDIW-YEMGKVRESLGLCPQYDLLFEELTVEDHLQF 445
++G +I + +RE++ + Q LF T+ D+L+
Sbjct: 397 LNGVEIASLDEQALRETISVLTQRVHLFSG-TLRDNLRL 434
Score = 34.2 bits (79), Expect = 0.14
Identities = 16/55 (29%), Positives = 30/55 (54%)
Query: 301 KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSKDIVNASGIQLRGLT 355
KA+ N L + Q + +LG +G+GKST + +L G + + +G+++ L
Sbjct: 352 KALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLD 406
>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 43.6 bits (103), Expect = 1e-04
Identities = 21/85 (24%), Positives = 47/85 (55%), Gaps = 4/85 (4%)
Query: 361 GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKV 420
+ A+++++L + ++ V+LG +G GK+T ++++ G + P+ G+ ++G I +
Sbjct: 17 PRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAE- 75
Query: 421 RESLGLCPQYDLLFEELTVEDHLQF 445
G+ Q + L L V D++ F
Sbjct: 76 ---RGVVFQNEALLPWLNVIDNVAF 97
Score = 32.4 bits (74), Expect = 0.36
Identities = 13/55 (23%), Positives = 35/55 (63%)
Query: 299 GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSKDIVNASGIQLRG 353
+ A+++++L + ++ V+LG +G GK+T ++++ G+ S+ + +G ++ G
Sbjct: 17 PRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEG 71
>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit;
Provisional.
Length = 305
Score = 43.5 bits (103), Expect = 1e-04
Identities = 18/61 (29%), Positives = 38/61 (62%), Gaps = 4/61 (6%)
Query: 349 IQLRGLTKIYKTGK----KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSG 404
I+++ + KI+ KA+DN+++++ Q + ++G G+GK+T + L L++P +G
Sbjct: 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTG 62
Query: 405 T 405
T
Sbjct: 63 T 63
>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter;
Provisional.
Length = 588
Score = 43.8 bits (104), Expect = 1e-04
Identities = 27/106 (25%), Positives = 54/106 (50%), Gaps = 3/106 (2%)
Query: 341 KDIVNASG-IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLI 399
D+ G ++ ++ Y ++ V++++ + Q ++G GAGKST +++L +
Sbjct: 326 IDLGRVKGAVEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVF 385
Query: 400 IPTSGTAYIDGHDIW-YEMGKVRESLGLCPQYDLLFEELTVEDHLQ 444
P SG IDG DI +R ++ + Q LF ++ED+++
Sbjct: 386 DPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNR-SIEDNIR 430
Score = 28.8 bits (65), Expect = 7.7
Identities = 14/51 (27%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 284 LEGEVGF-CLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSML 333
++G V F ++ Y ++ V++++ + Q ++G GAGKST +++L
Sbjct: 331 VKGAVEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLL 381
>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP)
Family protein. [Transport and binding proteins,
Other].
Length = 617
Score = 43.9 bits (104), Expect = 1e-04
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Query: 380 LLGHNGAGKSTTMSMLTGLIIP---TSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEE 436
++G +GAGK+T M+ L SG+ ++G I + ++R Q DL
Sbjct: 56 VMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPI--DAKEMRAISAYVQQDDLFIPT 113
Query: 437 LTVEDHLQFFA 447
LTV +HL F A
Sbjct: 114 LTVREHLMFQA 124
Score = 29.6 bits (67), Expect = 4.4
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 52 SGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAKWR 99
SG+ ++G I + ++R Q DL LTV +HL F A R
Sbjct: 82 SGSVLLNGMPI--DAKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLR 127
Score = 28.5 bits (64), Expect = 9.0
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 318 LLGHNGAGKSTTMSMLTGYKRKSKDIVNASGIQLRG 353
++G +GAGK+T M+ L R K + + + L G
Sbjct: 56 VMGSSGAGKTTLMNALAF--RSPKGVKGSGSVLLNG 89
>gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC. SufC is part of the SUF
system, shown in E. coli to consist of six proteins and
believed to act in Fe-S cluster formation during
oxidative stress. SufC forms a complex with SufB and
SufD. SufC belongs to the ATP-binding cassette
transporter family (pfam00005) but is no longer thought
to be part of a transporter. The complex is reported as
cytosolic (PMID:12554644) or associated with the
membrane (PMID:11943156). The SUF system also includes a
cysteine desulfurase (SufS, enhanced by SufE) and a
probable iron-sulfur cluster assembly scaffold protein,
SufA [Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 243
Score = 43.0 bits (102), Expect = 2e-04
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 361 GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG--LIIPTSGTAYIDGHDI 413
K+ + + L + + +I ++G NG+GKST + G TSGT G D+
Sbjct: 12 DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDL 66
Score = 35.7 bits (83), Expect = 0.035
Identities = 11/40 (27%), Positives = 22/40 (55%)
Query: 299 GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKR 338
K+ + + L + + +I ++G NG+GKST + G+
Sbjct: 12 DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPS 51
>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL.
Members of this family are the PhnL protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated C-P lysase complex. This protein
(PhnL) and the adjacent-encoded PhnK (TIGR02323)
resemble transporter ATP-binding proteins but are
suggested, based on mutatgenesis studies, to be part of
this C-P lyase complex rather than part of a transporter
per se.
Length = 224
Score = 42.8 bits (101), Expect = 2e-04
Identities = 18/80 (22%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Query: 349 IQLRGLTKIY----KTGKK--AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPT 402
+++ L+K + + G + + N++L + + L G +GAGKST + L +P
Sbjct: 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPD 61
Query: 403 SGTAYIDGHDIWYEMGKVRE 422
SG + W ++ +
Sbjct: 62 SGRILVRHEGAWVDLAQASP 81
Score = 33.5 bits (77), Expect = 0.16
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 302 AVDNLTLDMYQNQITVLLGHNGAGKSTTMSML 333
+ N++L + + L G +GAGKST + L
Sbjct: 23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSL 54
>gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 290
Score = 43.1 bits (102), Expect = 2e-04
Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 8/75 (10%)
Query: 378 TVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYE-----MGKVRESLGLCPQY-- 430
++GH G+GKST + L GL+ PTSGT I I + +R+ +G+ Q+
Sbjct: 36 VAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPE 95
Query: 431 DLLFEELTVEDHLQF 445
LFEE TVE + F
Sbjct: 96 HQLFEE-TVEKDICF 109
>gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC
transporter, peptidase/ATP-binding protein. This
protein describes a multidomain ABC transporter subunit
that is one of three protein families associated with
some regularity with a distinctive family of putative
bacteriocins. It includes a bacteriocin-processing
peptidase domain at the N-terminus. Model TIGR03793
describes a conserved propeptide region for this
bacteriocin family, unusual because it shows obvious
homology a region of the enzyme nitrile hydratase up to
the classic Gly-Gly cleavage motif. This family is
therefore predicted to be a subunit of a bacteriocin
processing and export system characteristic to this
system that we designate NHLM, Nitrile Hydratase Leader
Microcin [Transport and binding proteins, Amino acids,
peptides and amines, Cellular processes, Biosynthesis of
natural products].
Length = 710
Score = 43.8 bits (104), Expect = 2e-04
Identities = 32/99 (32%), Positives = 50/99 (50%), Gaps = 7/99 (7%)
Query: 349 IQLRGLTKIY-KTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAY 407
++LR +T Y ++N +L + Q L+G +G+GKST ++ GL P SG
Sbjct: 478 VELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEIL 537
Query: 408 IDGH---DIWYEMGKVRESLGLCPQYDLLFEELTVEDHL 443
DG +I E+ + S+ + Q LFE TV D+L
Sbjct: 538 FDGIPREEIPREV--LANSVAMVDQDIFLFEG-TVRDNL 573
>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein;
Provisional.
Length = 530
Score = 43.7 bits (104), Expect = 2e-04
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 10/62 (16%)
Query: 380 LLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTV 439
L+G NG GKST M +L G + P++G +D ++ +GK+R Q FEE TV
Sbjct: 32 LIGANGCGKSTFMKILGGDLEPSAGNVSLDPNE---RLGKLR-------QDQFAFEEFTV 81
Query: 440 ED 441
D
Sbjct: 82 LD 83
Score = 31.0 bits (71), Expect = 1.5
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 10/49 (20%)
Query: 381 LGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQ 429
+G NG GK+T + L G + P SGT W E + G Q
Sbjct: 351 IGENGVGKTTLLRTLVGELEPDSGTVK------WSENANI----GYYAQ 389
Score = 29.9 bits (68), Expect = 3.0
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 318 LLGHNGAGKSTTMSMLTG 335
L+G NG GKST M +L G
Sbjct: 32 LIGANGCGKSTFMKILGG 49
>gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 320
Score = 42.9 bits (101), Expect = 2e-04
Identities = 24/103 (23%), Positives = 47/103 (45%), Gaps = 22/103 (21%)
Query: 363 KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYID----GHDIWYEMG 418
A++N++ +N+I ++G++G+GKST ++ GLI GT + G
Sbjct: 40 VALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHEL 99
Query: 419 -------------KVRESLGLC---PQYDLLFEELTVEDHLQF 445
++R + + P+Y LF++ T+E + F
Sbjct: 100 ITNPYSKKIKNFKELRRRVSMVFQFPEYQ-LFKD-TIEKDIMF 140
Score = 32.1 bits (73), Expect = 0.54
Identities = 11/35 (31%), Positives = 24/35 (68%)
Query: 301 KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
A++N++ +N+I ++G++G+GKST ++ G
Sbjct: 40 VALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNG 74
>gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 327
Score = 43.0 bits (102), Expect = 2e-04
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 9/73 (12%)
Query: 349 IQLRGLTKIYKTGK---------KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLI 399
+Q L K Y + KA+D ++ + + + ++G +G GKST +LT +
Sbjct: 6 LQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIE 65
Query: 400 IPTSGTAYIDGHD 412
PT G Y G D
Sbjct: 66 TPTGGELYYQGQD 78
>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter,
ATP-binding subunit. This protein family is the
ATP-binding cassette subunit of binding
protein-dependent ABC transporter complex that strictly
co-occurs with TIGR03769. TIGRFAMs model TIGR03769
describes a protein domain that occurs singly or as one
of up to three repeats in proteins of a number of
Actinobacteria, including Propionibacterium acnes
KPA171202. The TIGR03769 domain occurs both in an
adjacent gene for the substrate-binding protein and in
additional (often nearby) proteins, often with
LPXTG-like sortase recognition signals. Homologous
ATP-binding subunits outside the scope of this family
include manganese transporter MntA in Synechocystis sp.
PCC 6803 and chelated iron transporter subunits. The
function of this transporter complex is unknown
[Transport and binding proteins, Unknown substrate].
Length = 223
Score = 42.5 bits (100), Expect = 2e-04
Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 380 LLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQ 429
LLG NGAGK+T + + GLI P GT + G GK +G PQ
Sbjct: 11 LLGPNGAGKTTLLRAILGLIPPAKGTVKVAGA----SPGKGWRHIGYVPQ 56
Score = 29.4 bits (66), Expect = 3.0
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 318 LLGHNGAGKSTTMSMLTGYKRKSKDIVNASG 348
LLG NGAGK+T + + G +K V +G
Sbjct: 11 LLGPNGAGKTTLLRAILGLIPPAKGTVKVAG 41
>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis
ATP-binding export protein. CcmA, the ATP-binding
component of the bacterial CcmAB transporter. The CCM
family is involved in bacterial cytochrome c biogenesis.
Cytochrome c maturation in E. coli requires the ccm
operon, which encodes eight membrane proteins
(CcmABCDEFGH). CcmE is a periplasmic heme chaperon that
binds heme covalently and transfers it onto
apocytochrome c in the presence of CcmF, CcmG, and CcmH.
The CcmAB proteins represent an ABC transporter and the
CcmCD proteins participate in heme transfer to CcmE.
Length = 201
Score = 42.1 bits (99), Expect = 2e-04
Identities = 18/80 (22%), Positives = 39/80 (48%)
Query: 368 LTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLC 427
L+ + + + G NG+GK+T + +L GL P +G ++G + ++ + L
Sbjct: 19 LSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYL 78
Query: 428 PQYDLLFEELTVEDHLQFFA 447
+ L+V ++L+F+
Sbjct: 79 GHAPGIKTTLSVLENLRFWH 98
Score = 30.2 bits (68), Expect = 1.6
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 306 LTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRK 339
L+ + + + G NG+GK+T + +L G
Sbjct: 19 LSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPP 52
>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 42.6 bits (100), Expect = 2e-04
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLI-----IPTS 403
I++R L K+ + +D + L++ N IT L+G +G+GKST + + LI S
Sbjct: 4 IEIRDL-KVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVS 62
Query: 404 GTAYIDGHDIW 414
G Y+DG DI+
Sbjct: 63 GEVYLDGQDIF 73
Score = 31.4 bits (71), Expect = 0.84
Identities = 12/33 (36%), Positives = 22/33 (66%)
Query: 301 KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSML 333
+ +D + L++ N IT L+G +G+GKST + +
Sbjct: 17 EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVF 49
>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein.
[Transport and binding proteins, Other].
Length = 711
Score = 43.6 bits (103), Expect = 2e-04
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 367 NLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDI-WYEMGKVRESLG 425
LT ++ ++ L+G +G+GKST ++L L PT G +DG + Y+ + +
Sbjct: 499 GLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVA 558
Query: 426 LCPQYDLLF 434
L Q +LF
Sbjct: 559 LVGQEPVLF 567
Score = 30.1 bits (68), Expect = 3.4
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 305 NLTLDMYQNQITVLLGHNGAGKSTTMSML 333
LT ++ ++ L+G +G+GKST ++L
Sbjct: 499 GLTFTLHPGEVVALVGPSGSGKSTVAALL 527
>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 42.4 bits (100), Expect = 2e-04
Identities = 24/88 (27%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
Query: 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYI 408
+Q+ L Y GK A++++ L + ++ V+LG +G GK+T ++++ G + G+ +
Sbjct: 2 LQISHLYADYG-GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITL 60
Query: 409 DGHDI---WYEMGKVRESLGLCPQYDLL 433
DG + E G V ++ GL P ++
Sbjct: 61 DGKPVEGPGAERGVVFQNEGLLPWRNVQ 88
Score = 32.7 bits (75), Expect = 0.27
Identities = 14/55 (25%), Positives = 31/55 (56%)
Query: 299 GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSKDIVNASGIQLRG 353
GK A++++ L + ++ V+LG +G GK+T ++++ G+ + G + G
Sbjct: 13 GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEG 67
>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein.
This model describes the energy-transducing ATPase
subunit ThiQ of the ThiBPQ thiamine (and thiamine
pyrophosphate) ABC transporter in several
Proteobacteria. This protein is found so far only in
Proteobacteria, and is found in complete genomes only if
the ThiB and ThiP subunits are also found [Transport and
binding proteins, Other].
Length = 213
Score = 42.2 bits (99), Expect = 2e-04
Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 370 LDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQ 429
L++ +I ++G +GAGKST ++++ G I P SG+ ++ + + + + Q
Sbjct: 19 LNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSH-TGLAPYQRPVSMLFQ 77
Query: 430 YDLLFEELTVEDHL 443
+ LF LTV ++
Sbjct: 78 ENNLFAHLTVRQNI 91
Score = 28.3 bits (63), Expect = 6.6
Identities = 10/29 (34%), Positives = 21/29 (72%)
Query: 308 LDMYQNQITVLLGHNGAGKSTTMSMLTGY 336
L++ +I ++G +GAGKST ++++ G+
Sbjct: 19 LNVADGEIVAIMGPSGAGKSTLLNLIAGF 47
>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding
subunit. This model describes spermidine/putrescine ABC
transporter, ATP binding subunit in bacteria and its
equivalents in archaea. This transport system belong to
the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Polyamines like spermidine and putrescine play
vital role in cell proliferation, differentiation, and
ion homeostasis. The concentration of polyamines within
the cell are regulated by biosynthesis, degradation and
transport (uptake and efflux included) [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 325
Score = 42.9 bits (101), Expect = 3e-04
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 380 LLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTV 439
LLG +G GK+T + +L G P SG+ +DG D+ + + + Q LF +TV
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDV-TNVPPHLRHINMVFQSYALFPHMTV 59
Query: 440 EDHLQF 445
E+++ F
Sbjct: 60 EENVAF 65
>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in
lysophospholipase L1 biosynthesis, ATPase component
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 228
Score = 42.0 bits (99), Expect = 3e-04
Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 349 IQLRGLTKIYKTGKKAVDNLT---LDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGT 405
I++ L+K G+ + L L + + + ++G +G+GKST +++L GL P+SG
Sbjct: 7 IEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGE 66
Query: 406 AYIDGHDI 413
+ G +
Sbjct: 67 VRLLGQPL 74
Score = 28.5 bits (64), Expect = 6.9
Identities = 14/50 (28%), Positives = 25/50 (50%)
Query: 305 NLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSKDIVNASGIQLRGL 354
+ L + + + ++G +G+GKST +++L G S V G L L
Sbjct: 28 GVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKL 77
>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component
[Coenzyme metabolism].
Length = 231
Score = 42.0 bits (99), Expect = 3e-04
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 368 LTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHD 412
L + +I +LG +GAGKST ++++ G P SG I+G D
Sbjct: 18 FDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVD 62
Score = 29.6 bits (67), Expect = 2.9
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 306 LTLDMYQNQITVLLGHNGAGKSTTMSMLTGY 336
L + +I +LG +GAGKST ++++ G+
Sbjct: 18 FDLTVPAGEIVAILGPSGAGKSTLLNLIAGF 48
>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family
protein. [Transport and binding proteins, Other].
Length = 1394
Score = 43.2 bits (102), Expect = 3e-04
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 10/77 (12%)
Query: 376 QITVLLGHNGAGKSTTMSML-----TGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQY 430
+T L+G +GAGK+T +++L TG+I T G ++G + + S+G Q
Sbjct: 790 TLTALMGASGAGKTTLLNVLAERVTTGVI--TGGDRLVNGRPL---DSSFQRSIGYVQQQ 844
Query: 431 DLLFEELTVEDHLQFFA 447
DL TV + L+F A
Sbjct: 845 DLHLPTSTVRESLRFSA 861
Score = 35.5 bits (82), Expect = 0.075
Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 10/82 (12%)
Query: 376 QITVLLGHNGAGKSTTMSMLTG-----LIIPTSGTAY--IDGHDIWYEMGKVRESLGLCP 428
++TV+LG G+G ST + + I Y I +I R +
Sbjct: 88 ELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEI---KKHYRGDVVYNA 144
Query: 429 QYDLLFEELTVEDHLQFFAKGK 450
+ D+ F LTV + L F A+ K
Sbjct: 145 ETDVHFPHLTVGETLDFAARCK 166
Score = 28.5 bits (64), Expect = 9.9
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
Query: 314 QITVLLGHNGAGKSTTMSML-----TGYKRKSKDIVNASGIQ 350
+T L+G +GAGK+T +++L TG +VN +
Sbjct: 790 TLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD 831
>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit;
Provisional.
Length = 353
Score = 42.4 bits (100), Expect = 3e-04
Identities = 26/83 (31%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 363 KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRE 422
+ +++++LD+ Q+ LLG +G+GK+T + ++ GL TSG G D+ + R+
Sbjct: 16 QVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRK 75
Query: 423 SLGLCPQYDLLFEELTVEDHLQF 445
+G Q+ LF +TV D++ F
Sbjct: 76 -VGFVFQHYALFRHMTVFDNIAF 97
Score = 29.7 bits (67), Expect = 3.2
Identities = 11/35 (31%), Positives = 25/35 (71%)
Query: 301 KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
+ +++++LD+ Q+ LLG +G+GK+T + ++ G
Sbjct: 16 QVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAG 50
>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK;
Provisional.
Length = 258
Score = 41.8 bits (99), Expect = 3e-04
Identities = 18/63 (28%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 350 QLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYID 409
+RGLTK+Y K +++ D+Y ++ ++G +G+GK+T ++ L+ + P +G +
Sbjct: 8 SVRGLTKLYGPRK-GCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYR 66
Query: 410 GHD 412
D
Sbjct: 67 MRD 69
Score = 31.4 bits (72), Expect = 0.90
Identities = 13/44 (29%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 292 LTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
LTK+Y K +++ D+Y ++ ++G +G+GK+T ++ L+
Sbjct: 12 LTKLYGPRK-GCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSA 54
>gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK.
Members of this family are the PhnK protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated complex. This protein (PhnK) and the
adjacent-encoded PhnL resemble transporter ATP-binding
proteins but are suggested, based on mutatgenesis
studies, to be part of this complex rather than part of
a transporter per se [Central intermediary metabolism,
Phosphorus compounds].
Length = 253
Score = 41.7 bits (98), Expect = 4e-04
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYI 408
+Q+ GL+K Y G K +++ D+Y ++ ++G +G+GKST + L G + P GTA
Sbjct: 4 LQVSGLSKSY-GGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATY 62
Query: 409 DGHD 412
Sbjct: 63 IMRS 66
Score = 31.3 bits (71), Expect = 0.94
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 292 LTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
L+K Y G K +++ D+Y ++ ++G +G+GKST + L G
Sbjct: 9 LSKSY-GGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAG 51
>gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding
subunit; Provisional.
Length = 264
Score = 41.7 bits (98), Expect = 4e-04
Identities = 16/41 (39%), Positives = 28/41 (68%)
Query: 364 AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSG 404
A+D+++L Y+ + L+G NG+GKST +++ G + PT G
Sbjct: 39 ALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVG 79
Score = 33.3 bits (76), Expect = 0.23
Identities = 13/34 (38%), Positives = 24/34 (70%)
Query: 302 AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
A+D+++L Y+ + L+G NG+GKST +++ G
Sbjct: 39 ALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGG 72
>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 41.9 bits (98), Expect = 4e-04
Identities = 17/48 (35%), Positives = 34/48 (70%), Gaps = 1/48 (2%)
Query: 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSML 395
I+++ L+ Y T KA++ +++D+Y+N++T ++G +G GKST + L
Sbjct: 7 AIKVKDLSFYYNT-SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTL 53
Score = 40.8 bits (95), Expect = 8e-04
Identities = 14/38 (36%), Positives = 27/38 (71%)
Query: 296 YKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSML 333
Y KA++ +++D+Y+N++T ++G +G GKST + L
Sbjct: 16 YYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTL 53
>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein;
Provisional.
Length = 582
Score = 42.3 bits (100), Expect = 4e-04
Identities = 27/104 (25%), Positives = 51/104 (49%), Gaps = 3/104 (2%)
Query: 349 IQLRGLTKIYKTGKK-AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAY 407
I+ R +T Y + A+ N+ + + L+G +G+GKST ++LT G
Sbjct: 342 IEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEIL 401
Query: 408 IDGHDIW-YEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAKGK 450
+DGHD+ Y + +R + L Q LF + T+ +++ + +
Sbjct: 402 LDGHDLRDYTLASLRNQVALVSQNVHLFND-TIANNIAYARTEQ 444
Score = 29.6 bits (67), Expect = 4.1
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 286 GEVGFCLTKIYKTGKK--AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLT 334
G++ F GK+ A+ N+ + + L+G +G+GKST ++LT
Sbjct: 340 GDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLT 390
>gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 41.6 bits (98), Expect = 5e-04
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 344 VNASGIQLRGL-TKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGL--II 400
A+ I++R ++ K+A+ ++ LD+ + +T +G +G GKST + L + I
Sbjct: 13 ATATEIKMRARDVSVFYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTI 72
Query: 401 PT---SGTAYIDGHDIW 414
+G +DG DI+
Sbjct: 73 DGCRVTGKITLDGEDIY 89
Score = 37.4 bits (87), Expect = 0.011
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 294 KIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKST 328
++ K+A+ ++ LD+ + +T +G +G GKST
Sbjct: 26 SVFYGEKQALFDVDLDIPEKTVTAFIGPSGCGKST 60
>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 41.5 bits (97), Expect = 5e-04
Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 5/58 (8%)
Query: 362 KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGL-----IIPTSGTAYIDGHDIW 414
K+A++++ L +Y+N+IT L+G +G GKST + L + + G +DG +I+
Sbjct: 17 KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIY 74
Score = 38.0 bits (88), Expect = 0.007
Identities = 15/34 (44%), Positives = 26/34 (76%)
Query: 300 KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSML 333
K+A++++ L +Y+N+IT L+G +G GKST + L
Sbjct: 17 KQALNDINLPIYENKITALIGPSGCGKSTFLRCL 50
>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD.
This family represents the NikD subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase.
NikD and NikE are homologous [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 230
Score = 40.8 bits (96), Expect = 6e-04
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 364 AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIP----TSGTAYIDGHDI 413
V +L L + + ++ L+G +G+GKS T + GL+ P TSG +DG +
Sbjct: 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPL 54
Score = 33.1 bits (76), Expect = 0.25
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 302 AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
V +L L + + ++ L+G +G+GKS T + G
Sbjct: 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILG 34
>gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE;
Provisional.
Length = 268
Score = 41.2 bits (97), Expect = 7e-04
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 8/73 (10%)
Query: 349 IQLRGLTKIYKTG--------KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLII 400
+ + GL+ Y G + ++N++L + + LLG +G GKST +L GL
Sbjct: 4 LNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLES 63
Query: 401 PTSGTAYIDGHDI 413
P+ G G +
Sbjct: 64 PSQGNVSWRGEPL 76
Score = 35.8 bits (83), Expect = 0.038
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 11/81 (13%)
Query: 292 LTKIYKTG--------KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSKDI 343
L+ Y G + ++N++L + + LLG +G GKST +L G + S+
Sbjct: 9 LSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGN 68
Query: 344 VNASGIQLRGLTKIYKTGKKA 364
V+ G L K+ + +KA
Sbjct: 69 VSWRG---EPLAKLNRAQRKA 86
>gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 195
Score = 40.6 bits (95), Expect = 7e-04
Identities = 25/91 (27%), Positives = 48/91 (52%), Gaps = 11/91 (12%)
Query: 362 KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDI----WYEM 417
+K + +L++ + IT + G NG GKS+ + M+ G++ P+SG Y +I
Sbjct: 13 QKNLFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYC 72
Query: 418 GKVRESLGLCPQYDLLFEELTVEDHLQFFAK 448
+ +LGL E+TV ++L+F+++
Sbjct: 73 TYIGHNLGLK-------LEMTVFENLKFWSE 96
Score = 30.2 bits (68), Expect = 1.7
Identities = 16/61 (26%), Positives = 30/61 (49%)
Query: 300 KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSKDIVNASGIQLRGLTKIYK 359
+K + +L++ + IT + G NG GKS+ + M+ G + S + + + K Y
Sbjct: 13 QKNLFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYC 72
Query: 360 T 360
T
Sbjct: 73 T 73
>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding
protein. This model represents the ATP-binding cassette
(ABC) protein of the three subunit molybdate ABC
transporter. The three proteins of this complex are
homologous to proteins of the sulfate ABC transporter.
Molybdenum may be used in nitrogenases of
nitrogen-fixing bacteria and in molybdopterin cofactors.
In some cases, molybdate may be transported by a sulfate
transporter rather than by a specific molybdate
transporter [Transport and binding proteins, Anions].
Length = 354
Score = 41.3 bits (97), Expect = 8e-04
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 10/88 (11%)
Query: 375 NQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKV------RESLGLCP 428
+T + G +G+GK+T + ++ GL P G ++G ++ K + +G
Sbjct: 23 QGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNG-RTLFDSRKGIFLPPEKRRIGYVF 81
Query: 429 QYDLLFEELTVEDHLQF---FAKGKEFN 453
Q LF L+V +L++ A+ E
Sbjct: 82 QEARLFPHLSVRGNLRYGMKRARPSERR 109
>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding
protein; Provisional.
Length = 369
Score = 41.2 bits (97), Expect = 8e-04
Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 10/103 (9%)
Query: 347 SGIQLRGLTKIYKTGKKAVD-NLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGT 405
+ + LR +TK Y G + ++ LD+++ + V +G +G GKST + M+ GL TSG
Sbjct: 2 ASVTLRNVTKAY--GDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGD 59
Query: 406 AYIDGHDIWYEMGKV---RESLGLCPQYDLLFEELTVEDHLQF 445
+I M V +G+ Q L+ L+V +++ F
Sbjct: 60 LFIGEK----RMNDVPPAERGVGMVFQSYALYPHLSVAENMSF 98
>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 269
Score = 40.9 bits (96), Expect = 8e-04
Identities = 18/67 (26%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 364 AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDI-WYEMGKVRE 422
+ +++ ++ + Q T ++GHNG+GKST ++ G+ SG + + I K+R+
Sbjct: 24 TLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRK 83
Query: 423 SLGLCPQ 429
+G+ Q
Sbjct: 84 HIGIVFQ 90
Score = 32.0 bits (73), Expect = 0.60
Identities = 11/34 (32%), Positives = 23/34 (67%)
Query: 302 AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
+ +++ ++ + Q T ++GHNG+GKST ++ G
Sbjct: 24 TLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIG 57
>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 574
Score = 41.3 bits (98), Expect = 8e-04
Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Query: 336 YKRKSKDIVNASGIQLRGLTKIY-KTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSM 394
+ S + + L ++ Y + + L+L + + LLG G GKST + +
Sbjct: 326 FPTTSTAAADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQL 385
Query: 395 LTGLIIPTSGTAYIDGHDI 413
LT P G ++G I
Sbjct: 386 LTRAWDPQQGEILLNGQPI 404
Score = 34.0 bits (79), Expect = 0.16
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 301 KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLT 334
+ L+L + + LLG G GKST + +LT
Sbjct: 354 PVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLT 387
>gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug
resistance-like subfamily G of ATP-binding cassette
transporters. The pleiotropic drug resistance (PDR) is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. This PDR subfamily represents
domain I of its (ABC-IM)2 organization. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds including
sugars, ions, peptides, and more complex organic
molecules. The nucleotide-binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 202
Score = 40.3 bits (95), Expect = 9e-04
Identities = 21/97 (21%), Positives = 38/97 (39%), Gaps = 5/97 (5%)
Query: 361 GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLI---IPTSGTAYIDGHDIWYEM 417
+ + + + ++ ++LG G+G ST + L + G + +G
Sbjct: 19 KIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA 78
Query: 418 GKVRESLGLCPQYDLLFEELTVEDHLQFFA--KGKEF 452
K + + D+ F LTV + L F KG EF
Sbjct: 79 EKYPGEIIYVSEEDVHFPTLTVRETLDFALRCKGNEF 115
>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 40.8 bits (95), Expect = 9e-04
Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 5/93 (5%)
Query: 365 VDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYE-MGKVRES 423
++ ++ + + + ++G NG+GKSTT ++ GL G IDG + E + +R
Sbjct: 23 LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRK 82
Query: 424 LGLCPQY-DLLFEELTVEDHLQFFAKGKEFNGI 455
+G+ Q D F TVED + F G E GI
Sbjct: 83 IGMVFQNPDNQFVGATVEDDVAF---GMENQGI 112
Score = 29.7 bits (66), Expect = 3.4
Identities = 12/49 (24%), Positives = 26/49 (53%)
Query: 303 VDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSKDIVNASGIQL 351
++ ++ + + + ++G NG+GKSTT ++ G + + V G L
Sbjct: 23 LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELL 71
>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA
family. Members of this protein family are found mostly
in the Cyanobacteria, but also in the Planctomycetes.
Cyanobacterial examples are involved in heterocyst
formation, by which some fraction of members of the
colony undergo a developmental change and become capable
of nitrogen fixation. The DevBCA proteins are thought
export of either heterocyst-specific glycolipids or an
enzyme essential for formation of the laminated layer
found in heterocysts.
Length = 220
Score = 40.4 bits (95), Expect = 9e-04
Identities = 26/103 (25%), Positives = 54/103 (52%), Gaps = 7/103 (6%)
Query: 349 IQLRGLTKIYKTG---KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGT 405
I +R L Y G K+ + ++ L++ +I +L G +G+GK+T ++++ GL G+
Sbjct: 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGS 61
Query: 406 AYIDGHDIW----YEMGKVRESLGLCPQYDLLFEELTVEDHLQ 444
+ G +++ E+ ++R ++G Q L LT ++Q
Sbjct: 62 LKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQ 104
>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 40.8 bits (95), Expect = 0.001
Identities = 15/48 (31%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Query: 348 GIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSML 395
I++ L+ Y T +K ++ +++++YQ+++T ++G +G GKST + L
Sbjct: 7 AIKVNNLSFYYDT-QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCL 53
Score = 38.5 bits (89), Expect = 0.005
Identities = 12/38 (31%), Positives = 27/38 (71%)
Query: 296 YKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSML 333
Y +K ++ +++++YQ+++T ++G +G GKST + L
Sbjct: 16 YYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCL 53
>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC
transporter, HlyB family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 694
Score = 40.9 bits (96), Expect = 0.001
Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 12/96 (12%)
Query: 346 ASGIQLRGLTKIYKTGKKAV-DNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSG 404
I + Y V NL LD+ + ++G +G+GKST +L L P G
Sbjct: 453 RGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHG 512
Query: 405 TAYIDGHDI------WYEMGKVRESLGLCPQYDLLF 434
+DG D+ W +R +G+ Q ++LF
Sbjct: 513 QVLVDGVDLAIADPAW-----LRRQMGVVLQENVLF 543
>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit;
Provisional.
Length = 232
Score = 40.0 bits (94), Expect = 0.001
Identities = 15/44 (34%), Positives = 28/44 (63%)
Query: 369 TLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHD 412
L + + + +LG +GAGKST ++++ G + P SG+ ++G D
Sbjct: 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQD 62
>gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding
cassette component of monosaccharide transport system.
This family represents domain II of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the uptake
of monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. In members of Carb_Monos
family the single hydrophobic gene product forms a
homodimer, while the ABC protein represents a fusion of
two nucleotide-binding domains. However, it is assumed
that two copies of the ABC domains are present in the
assembled transporter.
Length = 182
Score = 39.3 bits (93), Expect = 0.002
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Query: 350 QLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYID 409
++RGL+ K AV +++ ++ +I + G G G++ L GL P SG +D
Sbjct: 6 EVRGLS-----VKGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLD 60
Query: 410 GHDI 413
G +
Sbjct: 61 GKPV 64
>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding
subunit; Provisional.
Length = 265
Score = 39.8 bits (93), Expect = 0.002
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 368 LTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDG 410
L+L ++T L+GHNG+GKST + ML P+ G +D
Sbjct: 30 LSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDA 72
Score = 35.5 bits (82), Expect = 0.042
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 306 LTLDMYQNQITVLLGHNGAGKSTTMSML 333
L+L ++T L+GHNG+GKST + ML
Sbjct: 30 LSLTFPAGKVTGLIGHNGSGKSTLLKML 57
>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein;
Provisional.
Length = 271
Score = 39.8 bits (93), Expect = 0.002
Identities = 21/74 (28%), Positives = 44/74 (59%), Gaps = 8/74 (10%)
Query: 364 AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLI--IP---TSGTAYIDGHDIW---Y 415
A+ N+ LD+++N++T ++G +G GKST + L ++ +P T+G +I+ Y
Sbjct: 39 ALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSY 98
Query: 416 EMGKVRESLGLCPQ 429
+ ++R ++G+ Q
Sbjct: 99 SVEELRTNVGMVFQ 112
Score = 35.2 bits (81), Expect = 0.060
Identities = 13/32 (40%), Positives = 24/32 (75%)
Query: 302 AVDNLTLDMYQNQITVLLGHNGAGKSTTMSML 333
A+ N+ LD+++N++T ++G +G GKST + L
Sbjct: 39 ALKNINLDIHENEVTAIIGPSGCGKSTYIKTL 70
>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 257
Score = 39.6 bits (92), Expect = 0.002
Identities = 30/115 (26%), Positives = 57/115 (49%), Gaps = 13/115 (11%)
Query: 338 RKSKDIVNASGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 397
+ ++D+ N S + L Y K + ++T+ + N I ++G +G+GKST + +L
Sbjct: 5 KSAEDVFNISRLYL------YINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNR 58
Query: 398 LI------IPTSGTAYIDGHDIW-YEMGKVRESLGLCPQYDLLFEELTVEDHLQF 445
LI I G G DI+ + K+R+ +G+ Q F L++ D++ +
Sbjct: 59 LIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAY 113
Score = 28.5 bits (63), Expect = 6.7
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 14/72 (19%)
Query: 295 IYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG----YKRK----------S 340
+Y K + ++T+ + N I ++G +G+GKST + +L Y K
Sbjct: 18 LYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFG 77
Query: 341 KDIVNASGIQLR 352
KDI I+LR
Sbjct: 78 KDIFQIDAIKLR 89
>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC
transporter, PrtD family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 544
Score = 40.4 bits (95), Expect = 0.002
Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 365 VDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIW-YEMGKVRES 423
+ ++ + + ++G +G+GKST ++ G+ PTSG+ +DG D+ ++ +
Sbjct: 334 LRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKH 393
Query: 424 LGLCPQYDLLFE 435
+G PQ LF
Sbjct: 394 IGYLPQDVELFP 405
>gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase
L inhibitor. The ABC ATPase RNase L inhibitor (RLI) is
a key enzyme in ribosomal biogenesis, formation of
translation preinitiation complexes, and assembly of HIV
capsids. RLI's are not transport proteins, and thus
cluster with a group of soluble proteins that lack the
transmembrane components commonly found in other members
of the family. Structurally, RLI's have an N-terminal
Fe-S domain and two nucleotide-binding domains, which
are arranged to form two composite active sites in their
interface cleft. RLI is one of the most conserved
enzymes between archaea and eukaryotes with a sequence
identity more than 48%. The high degree of evolutionary
conservation suggests that RLI performs a central role
in archaeal and eukaryotic physiology.
Length = 177
Score = 39.1 bits (91), Expect = 0.002
Identities = 15/55 (27%), Positives = 27/55 (49%)
Query: 371 DMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLG 425
+ + ++ ++G NG GK+T + +L G +IP DG Y+ + S G
Sbjct: 21 VVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGG 75
Score = 30.6 bits (69), Expect = 0.99
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 309 DMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSKDIVNASGIQLRGLTKIYK 359
+ + ++ ++G NG GK+T + +L G + I N + G+T +YK
Sbjct: 21 VVKEGEVIGIVGPNGTGKTTAVKILAG-----QLIPNGDNDEWDGITPVYK 66
>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein. This model
describes glucan exporter ATP binding protein in
bacteria. It belongs to the larger ABC transporter
superfamily with the characteristic ATP binding motif.
The In general, this protein is in some ways implicated
in osmoregulation and suggested to participate in the
export of glucan from the cytoplasm to periplasm. The
cyclic beta-1,2-glucan in the bactrerial periplasmic
space is suggested to confer the property of high
osmolority. It has also been demonstrated that mutants
in this loci have lost functions of virulence and
motility. It is unclear as to how virulence and
osmoadaptaion are related [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 585
Score = 40.3 bits (94), Expect = 0.002
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 345 NASG-IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTS 403
N G ++ R +T + + V +++ + Q ++G GAGK+T +++L + PT
Sbjct: 330 NVKGAVEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTV 389
Query: 404 GTAYIDGHDI 413
G IDG DI
Sbjct: 390 GQILIDGIDI 399
>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein;
Provisional.
Length = 272
Score = 39.5 bits (92), Expect = 0.002
Identities = 20/65 (30%), Positives = 32/65 (49%)
Query: 346 ASGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGT 405
+GI + +T ++ G A+ + + + I L+G NG+GKST L G + SG
Sbjct: 4 QAGIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGK 63
Query: 406 AYIDG 410
I G
Sbjct: 64 ISILG 68
Score = 34.5 bits (79), Expect = 0.082
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 292 LTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKR 338
+T ++ G A+ + + + I L+G NG+GKST L G+ R
Sbjct: 12 VTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR 58
>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 39.6 bits (92), Expect = 0.002
Identities = 27/98 (27%), Positives = 52/98 (53%), Gaps = 14/98 (14%)
Query: 340 SKDIVNASGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGL- 398
+K I+ +S + L + +A+ + LD QN+IT L+G +G GKST + L +
Sbjct: 2 AKKIITSSDVHL------FYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMN 55
Query: 399 -IIPT---SGTAYIDGHDIW---YEMGKVRESLGLCPQ 429
+IP +G + G +I+ ++ ++R+ +G+ Q
Sbjct: 56 DLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQ 93
Score = 33.4 bits (76), Expect = 0.20
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 295 IYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSML 333
++ +A+ + LD QN+IT L+G +G GKST + L
Sbjct: 13 LFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTL 51
>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster
assembly, permease and ATPase components
[Posttranslational modification, protein turnover,
chaperones].
Length = 497
Score = 39.6 bits (93), Expect = 0.003
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 382 GHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIW-YEMGKVRESLGLCPQYDLLF 434
G +GAGKST + +L SG+ IDG DI +R ++G+ PQ +LF
Sbjct: 296 GESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLF 349
Score = 30.8 bits (70), Expect = 1.7
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Query: 29 GAMKDYIAGVVFDDDIAGLIIPTSGTAYIDGHDIW-YEMGKVRESLGLCPQYDLLF 83
GA K I ++F SG+ IDG DI +R ++G+ PQ +LF
Sbjct: 299 GAGKSTILRLLFR-----FYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLF 349
>gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of
CFTR,subfamily C. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 275
Score = 39.1 bits (91), Expect = 0.003
Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Query: 349 IQLRGLTKIYKTGKKAV-DNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAY 407
+ ++ LT Y G AV +N++ + Q LLG G+GKST +S L + T G
Sbjct: 3 MTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRL-LNTEGDIQ 61
Query: 408 IDGHDIWYEMG--KVRESLGLCPQYDLLF 434
IDG W + K R++ G+ PQ +F
Sbjct: 62 IDGVS-WNSVPLQKWRKAFGVIPQKVFIF 89
Score = 28.3 bits (63), Expect = 9.1
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 292 LTKIYKTGKKAV-DNLTLDMYQNQITVLLGHNGAGKSTTMSML 333
LT Y G AV +N++ + Q LLG G+GKST +S
Sbjct: 8 LTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAF 50
>gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 235
Score = 38.9 bits (91), Expect = 0.003
Identities = 14/54 (25%), Positives = 26/54 (48%)
Query: 365 VDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMG 418
+ N++L + + VL G +G+GKST + L +P G + W ++
Sbjct: 27 LRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLV 80
Score = 33.2 bits (76), Expect = 0.21
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 303 VDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
+ N++L + + VL G +G+GKST + L
Sbjct: 27 LRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYA 59
>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 352
Score = 39.2 bits (92), Expect = 0.003
Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 10/89 (11%)
Query: 377 ITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGK------VRESLGLCPQY 430
IT L G +G+GK++ ++M+ GL P G ++G + + K + +G Q
Sbjct: 26 ITALFGPSGSGKTSLINMIAGLTRPDEGRIELNG-RVLVDAEKGIFLPPEKRRIGYVFQD 84
Query: 431 DLLFEELTVEDHLQF---FAKGKEFNGIT 456
LF TV +L++ + +F+ +
Sbjct: 85 ARLFPHYTVRGNLRYGMWKSMRAQFDQLV 113
Score = 30.4 bits (69), Expect = 2.3
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 315 ITVLLGHNGAGKSTTMSMLTGYKRKSKDIVNASG 348
IT L G +G+GK++ ++M+ G R + + +G
Sbjct: 26 ITALFGPSGSGKTSLINMIAGLTRPDEGRIELNG 59
>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein;
Reviewed.
Length = 240
Score = 38.9 bits (91), Expect = 0.003
Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 6/101 (5%)
Query: 349 IQLRGLTKIYKTGKKAV-DNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAY 407
I+ + ++K + G V N+ L++ Q ++ V++G +G+GKST + + L TSG
Sbjct: 2 IEFKNVSKHF--GPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLI 59
Query: 408 IDGHDIWYEMGKVRE---SLGLCPQYDLLFEELTVEDHLQF 445
+DG + R G+ Q LF LT +++ F
Sbjct: 60 VDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMF 100
Score = 28.9 bits (65), Expect = 5.4
Identities = 10/25 (40%), Positives = 19/25 (76%)
Query: 304 DNLTLDMYQNQITVLLGHNGAGKST 328
N+ L++ Q ++ V++G +G+GKST
Sbjct: 18 HNIDLNIDQGEVVVIIGPSGSGKST 42
>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 213
Score = 38.7 bits (90), Expect = 0.004
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Query: 367 NLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPT---SGTAYIDGHDIWYEMGKVRES 423
N T+ + +I L+G +G GKST +S + G + +G +++ + + +
Sbjct: 22 NFTIA--KGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRL-DMLPAAQRQ 78
Query: 424 LGLCPQYDLLFEELTVEDHLQF 445
+G+ Q LLF L+V +L F
Sbjct: 79 IGILFQDALLFPHLSVGQNLLF 100
>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog
[General function prediction only].
Length = 591
Score = 39.2 bits (92), Expect = 0.004
Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 18/87 (20%)
Query: 362 KKAVDNLTLD-----MYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYE 416
KK + L+ +Y ++ +LG NG GK+T + +L G+I P G
Sbjct: 349 KKTYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEG-----------S 397
Query: 417 MGKVRESLGLCPQYDLLFEELTVEDHL 443
++ S PQY + TVED L
Sbjct: 398 EEDLKVSYK--PQYISPDYDGTVEDLL 422
Score = 35.7 bits (83), Expect = 0.058
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 375 NQITVLLGHNGAGKSTTMSMLTGLIIPTSG 404
++ +LG NG GKST + +L G + P G
Sbjct: 100 GKVVGILGPNGIGKSTALKILAGELKPNLG 129
Score = 31.5 bits (72), Expect = 0.97
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
Query: 300 KKAVDNLTLD-----MYQNQITVLLGHNGAGKSTTMSMLTG 335
KK + L+ +Y ++ +LG NG GK+T + +L G
Sbjct: 349 KKTYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAG 389
Score = 31.5 bits (72), Expect = 1.1
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 12/65 (18%)
Query: 313 NQITVLLGHNGAGKSTTMSMLTG--------YKRK-SKD-IVNA-SGIQLRG-LTKIYKT 360
++ +LG NG GKST + +L G Y+ S D ++ G +L+ K+Y+
Sbjct: 100 GKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEG 159
Query: 361 GKKAV 365
+AV
Sbjct: 160 ELRAV 164
>gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 38.4 bits (89), Expect = 0.004
Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 5/53 (9%)
Query: 367 NLTLDMYQNQITVLLGHNGAGKSTTMSMLTGL--IIPT---SGTAYIDGHDIW 414
N+ LD+ +N +T L+G +G GKST + L + +IP G Y+DG DI+
Sbjct: 21 NVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIY 73
Score = 29.5 bits (66), Expect = 2.9
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 305 NLTLDMYQNQITVLLGHNGAGKSTTMSML 333
N+ LD+ +N +T L+G +G GKST + L
Sbjct: 21 NVNLDIPKNSVTALIGPSGCGKSTFIRTL 49
>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 38.5 bits (89), Expect = 0.004
Identities = 23/100 (23%), Positives = 51/100 (51%), Gaps = 12/100 (12%)
Query: 364 AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGL--IIPTS---GTAYIDGHDIW---Y 415
A+ +++++ + + +G +G GKST + + + +IP + G IDG +I+
Sbjct: 18 ALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGV 77
Query: 416 EMGKVRESLGLCPQYDLLFEELTVEDHLQFFAKGKEFNGI 455
++ ++R+++G+ Q F + E+ A G NG+
Sbjct: 78 QVDELRKNVGMVFQRPNPFPKSIFEN----VAYGLRVNGV 113
>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor
regulator (CFTR). The model describes the cystis
fibrosis transmembrane conductor regulator (CFTR) in
eukaryotes. The principal role of this protein is
chloride ion conductance. The protein is predicted to
consist of 12 transmembrane domains. Mutations or lesions
in the genetic loci have been linked to the aetiology of
asthma, bronchiectasis, chronic obstructive pulmonary
disease etc. Disease-causing mutations have been studied
by 36Cl efflux assays in vitro cell cultures and
electrophysiology, all of which point to the impairment
of chloride channel stability and not the biosynthetic
processing per se [Transport and binding proteins,
Anions].
Length = 1490
Score = 39.1 bits (91), Expect = 0.005
Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 345 NASGIQLRGLTKIYKTGKKAV-DNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTS 403
+ + ++GLT Y +AV +L+ + Q LLG G+GKST +S L L + T
Sbjct: 1214 SGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRL-LSTE 1272
Query: 404 GTAYIDGHDIW--YEMGKVRESLGLCPQYDLLF 434
G IDG W + R++ G+ PQ +F
Sbjct: 1273 GEIQIDGVS-WNSVTLQTWRKAFGVIPQKVFIF 1304
Score = 29.9 bits (67), Expect = 3.9
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 292 LTKIYKTGKKAV-DNLTLDMYQNQITVLLGHNGAGKSTTMSML 333
LT Y +AV +L+ + Q LLG G+GKST +S L
Sbjct: 1223 LTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSAL 1265
Score = 29.5 bits (66), Expect = 5.6
Identities = 19/88 (21%), Positives = 40/88 (45%), Gaps = 17/88 (19%)
Query: 367 NLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRES--L 424
N++ + + Q+ + G G+GKS+ + M+ G + P+ GK++ S +
Sbjct: 444 NISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSE--------------GKIKHSGRI 489
Query: 425 GLCPQYDLLFEELTVEDHLQFFAKGKEF 452
PQ + T++D++ F E+
Sbjct: 490 SFSPQTSWIMPG-TIKDNIIFGLSYDEY 516
>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 38.4 bits (89), Expect = 0.005
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 368 LTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLC 427
L LD + +T L+G NG GKST L+GL+ P G G + Y R L L
Sbjct: 20 LNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSK---RGLLALR 76
Query: 428 PQYDLLFEE 436
Q +F++
Sbjct: 77 QQVATVFQD 85
Score = 33.8 bits (77), Expect = 0.14
Identities = 22/53 (41%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 306 LTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSKDIVNASGIQL----RGL 354
L LD + +T L+G NG GKST L+G R K V G L RGL
Sbjct: 20 LNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGL 72
>gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD;
Provisional.
Length = 254
Score = 38.1 bits (89), Expect = 0.005
Identities = 17/68 (25%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 347 SGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIP----T 402
I+LR + + + V ++L + + ++ L+G +G+GKS T + G++ T
Sbjct: 3 QQIELRNIA--LQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQT 60
Query: 403 SGTAYIDG 410
+G +DG
Sbjct: 61 AGRVLLDG 68
>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only detects
a fraction of this vast family. The poorly conserved
N-terminal helix is missing from the alignment.
Length = 148
Score = 37.0 bits (85), Expect = 0.006
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Query: 374 QNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTA-YIDGHDIWYEMGKVRESLGLCPQYDL 432
++ +++G G+GK+T L + P G YIDG DI E+ + + +
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKAS 60
Query: 433 LFEELTVEDHLQF 445
EL + L
Sbjct: 61 GSGELRLRLALAL 73
Score = 32.0 bits (72), Expect = 0.29
Identities = 7/42 (16%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 312 QNQITVLLGHNGAGKSTTMSMLTG-YKRKSKDIVNASGIQLR 352
++ +++G G+GK+T L ++ G +
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDIL 42
>gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding
protein OppF; Provisional.
Length = 331
Score = 38.1 bits (89), Expect = 0.006
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 363 KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDI 413
KAVD +TL +Y+ + ++G +G GKST + GL+ T G G D+
Sbjct: 35 KAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDL 85
Score = 31.6 bits (72), Expect = 0.87
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 301 KAVDNLTLDMYQNQITVLLGHNGAGKST 328
KAVD +TL +Y+ + ++G +G GKST
Sbjct: 35 KAVDGVTLRLYEGETLGVVGESGCGKST 62
>gnl|CDD|222160 pfam13476, AAA_23, AAA domain.
Length = 204
Score = 37.5 bits (87), Expect = 0.006
Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 5/66 (7%)
Query: 304 DNLTLDMYQNQITVLLGHNGAGKSTTM----SMLTGYKRKSKDIVNASGIQLRGLTKIYK 359
+L +D + +T++ G NG+GK+T + L G + K ++ + +
Sbjct: 11 KDLEID-FSKGLTLIYGPNGSGKTTILDAIRWALYGKTSRLKKSKGRGIVKGDIEIEKDE 69
Query: 360 TGKKAV 365
KK
Sbjct: 70 GKKKTY 75
Score = 34.5 bits (79), Expect = 0.071
Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
Query: 366 DNLTLDMYQNQITVLLGHNGAGKSTTM----SMLTG 397
+L +D + +T++ G NG+GK+T + L G
Sbjct: 11 KDLEID-FSKGLTLIYGPNGSGKTTILDAIRWALYG 45
>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 254
Score = 37.7 bits (87), Expect = 0.008
Identities = 28/113 (24%), Positives = 61/113 (53%), Gaps = 12/113 (10%)
Query: 357 IYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKST---TMSMLTGLI--IPTSGTAYIDGH 411
++ T KA++N+ + + +N IT L+G +G GKST T++ + L+ I G +G
Sbjct: 15 LFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGK 74
Query: 412 DIW---YEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRAL 461
+I+ +++ ++R +G+ Q F +++ D++ + G + +G + L
Sbjct: 75 NIYSNNFDILELRRKIGMVFQTPNPF-LMSIYDNISY---GPKIHGTKDKKKL 123
Score = 36.2 bits (83), Expect = 0.023
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 8/73 (10%)
Query: 295 IYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSKDIVNASGIQLRGL 354
++ T KA++N+ + + +N IT L+G +G GKST + L + D+V GI++ G
Sbjct: 15 LFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLN----RMNDLV--EGIKIEG- 67
Query: 355 TKIYKTGKKAVDN 367
+ GK N
Sbjct: 68 -NVIYEGKNIYSN 79
>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein;
Provisional.
Length = 272
Score = 37.7 bits (88), Expect = 0.008
Identities = 16/71 (22%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGL-----IIPTS 403
+++R L ++ K+A+ ++++ + +N++T +G +G GKST + +
Sbjct: 26 LEVRNL-NLFYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIE 84
Query: 404 GTAYIDGHDIW 414
G +DG +I+
Sbjct: 85 GEIRLDGQNIY 95
Score = 34.2 bits (79), Expect = 0.10
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 10/80 (12%)
Query: 294 KIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSK--DIVNASG-IQ 350
++ K+A+ ++++ + +N++T +G +G GKST +L + R + D G I+
Sbjct: 32 NLFYGDKQALFDISMRIPKNRVTAFIGPSGCGKST---LLRCFNRMNDLVDNCRIEGEIR 88
Query: 351 LRGLTKIYKTGKKAVDNLTL 370
L G IY K VD L
Sbjct: 89 LDG-QNIY---DKKVDVAEL 104
>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional.
Length = 590
Score = 38.3 bits (90), Expect = 0.008
Identities = 12/26 (46%), Positives = 20/26 (76%)
Query: 376 QITVLLGHNGAGKSTTMSMLTGLIIP 401
++T +LG NG GK+T + +L+G +IP
Sbjct: 100 KVTGILGPNGIGKTTAVKILSGELIP 125
Score = 36.3 bits (85), Expect = 0.031
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 17/87 (19%)
Query: 362 KKAVDNLTLD-----MYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYE 416
K + + +L+ +Y+ ++ ++G NG GK+T +L G++ P G + I Y+
Sbjct: 347 TKKLGDFSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-LKISYK 405
Query: 417 MGKVRESLGLCPQYDLLFEELTVEDHL 443
PQY + TVED L
Sbjct: 406 -----------PQYIKPDYDGTVEDLL 421
Score = 32.5 bits (75), Expect = 0.50
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 314 QITVLLGHNGAGKSTTMSMLTG 335
++T +LG NG GK+T + +L+G
Sbjct: 100 KVTGILGPNGIGKTTAVKILSG 121
Score = 28.6 bits (65), Expect = 9.2
Identities = 11/41 (26%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
Query: 300 KKAVDNLTLD-----MYQNQITVLLGHNGAGKSTTMSMLTG 335
K + + +L+ +Y+ ++ ++G NG GK+T +L G
Sbjct: 347 TKKLGDFSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAG 387
>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter. This model
describes cyclic peptide transporter in bacteria.
Bacteria have elaborate pathways for the production of
toxins and secondary metabolites. Many such compounds,
including syringomycin and pyoverdine are synthesized on
non-ribosomal templates consisting of a multienzyme
complex. On several occasions the proteins of the
complex and transporter protein are present on the same
operon. Often times these compounds cross the biological
membrane by specific transporters. Syringomycin is an
amphipathic, cylclic lipodepsipeptide when inserted into
host causes formation of channels, permeable to variety
of cations. On the other hand, pyoverdine is a cyclic
octa-peptidyl dihydroxyquinoline, which is efficient in
sequestering iron for uptake [Transport and binding
proteins, Amino acids, peptides and amines, Transport
and binding proteins, Other].
Length = 555
Score = 38.4 bits (89), Expect = 0.008
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 368 LTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDG 410
+ L + Q I ++G NG GKST + GL IP G +DG
Sbjct: 361 IDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDG 403
>gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional.
Length = 248
Score = 37.6 bits (88), Expect = 0.008
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 364 AVDN----LTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDG 410
AV L+ ++ +I L+G NGAGKST ++ + GL +P SG+ G
Sbjct: 7 AVSTRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGL-LPGSGSIQFAG 56
Score = 30.3 bits (69), Expect = 1.7
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Query: 302 AVDN----LTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
AV L+ ++ +I L+G NGAGKST ++ + G
Sbjct: 7 AVSTRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAG 44
>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase
and permease components [General function prediction
only].
Length = 580
Score = 38.0 bits (89), Expect = 0.010
Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 380 LLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDI--WYEMGKVRESLGLCPQYDLLFE 435
++G +G+GKST +L G+ PTSG+ +DG D+ W + ++ +G PQ LF+
Sbjct: 367 IIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQW-DREQLGRHIGYLPQDVELFD 423
>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein;
Provisional.
Length = 638
Score = 37.8 bits (88), Expect = 0.011
Identities = 15/26 (57%), Positives = 18/26 (69%)
Query: 380 LLGHNGAGKSTTMSMLTGLIIPTSGT 405
LLG NGAGKST + +L G + P SG
Sbjct: 343 LLGRNGAGKSTLIKLLAGELAPVSGE 368
Score = 37.1 bits (86), Expect = 0.020
Identities = 18/35 (51%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 318 LLGHNGAGKSTTMSMLTG-YKRKSKDIVNASGIQL 351
LLG NGAGKST + +L G S +I A GI+L
Sbjct: 343 LLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKL 377
Score = 31.7 bits (72), Expect = 1.1
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Query: 347 SGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTA 406
S +Q+R ++ +DN T + Q L+G NG GKST +++L I G+
Sbjct: 5 SSLQIRRGVRVL------LDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSY 58
Score = 30.1 bits (68), Expect = 3.2
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 303 VDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
+DN T + Q L+G NG GKST +++L
Sbjct: 17 LDNATATINPGQKVGLVGKNGCGKSTLLALLKN 49
>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 37.3 bits (86), Expect = 0.012
Identities = 26/100 (26%), Positives = 53/100 (53%), Gaps = 13/100 (13%)
Query: 364 AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGL--IIPT---SGTAYIDGHDIWYEMG 418
AV ++++D +N +T ++G +G GKST + + + ++P+ +G +D DI Y+ G
Sbjct: 19 AVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDI-YDRG 77
Query: 419 ----KVRESLGLCPQYDLLFEELTVEDHLQFFAKGKEFNG 454
+R +G+ Q F +++ D++ G + NG
Sbjct: 78 VDPVSIRRRVGMVFQKPNPFPAMSIYDNV---IAGYKLNG 114
Score = 30.0 bits (67), Expect = 2.3
Identities = 11/29 (37%), Positives = 21/29 (72%)
Query: 302 AVDNLTLDMYQNQITVLLGHNGAGKSTTM 330
AV ++++D +N +T ++G +G GKST +
Sbjct: 19 AVKDVSMDFPENSVTAIIGPSGCGKSTVL 47
>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein;
Provisional.
Length = 258
Score = 37.0 bits (86), Expect = 0.012
Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 11/105 (10%)
Query: 346 ASGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGL--IIP-- 401
A I ++ L IY AV+++ L++ +T +G +G GKST + L + +IP
Sbjct: 2 AKRIDVKDLN-IYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGA 60
Query: 402 -TSGTAYIDGHDIWYEMG----KVRESLGLCPQYDLLFEELTVED 441
G +DG D+ Y G VR ++G+ Q F +++ D
Sbjct: 61 RVEGEVLLDGEDL-YGPGVDPVAVRRTIGMVFQRPNPFPTMSIRD 104
Score = 28.1 bits (63), Expect = 8.5
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 295 IYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSML 333
IY AV+++ L++ +T +G +G GKST + L
Sbjct: 12 IYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTL 50
>gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit;
Provisional.
Length = 549
Score = 37.6 bits (87), Expect = 0.014
Identities = 16/47 (34%), Positives = 32/47 (68%)
Query: 364 AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDG 410
A++N++ ++ + +I ++G NG+GKST +++ G+ +P GT I G
Sbjct: 39 ALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKG 85
Score = 30.2 bits (68), Expect = 2.4
Identities = 14/47 (29%), Positives = 30/47 (63%)
Query: 302 AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSKDIVNASG 348
A++N++ ++ + +I ++G NG+GKST +++ G +K V+ G
Sbjct: 39 ALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKG 85
>gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional.
Length = 1486
Score = 37.6 bits (88), Expect = 0.014
Identities = 17/32 (53%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 369 TLDMYQNQITVLLGHNGAGKSTTM-SMLTGLI 399
T D+ +T L G NGAGKSTTM + +T LI
Sbjct: 22 TFDL-DELVTTLSGGNGAGKSTTMAAFVTALI 52
Score = 37.2 bits (87), Expect = 0.021
Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 307 TLDMYQNQITVLLGHNGAGKSTTM 330
T D+ +T L G NGAGKSTTM
Sbjct: 22 TFDL-DELVTTLSGGNGAGKSTTM 44
>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding
protein YecC; Provisional.
Length = 250
Score = 36.7 bits (85), Expect = 0.015
Identities = 15/59 (25%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 347 SGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGT 405
S I+++ L K + G+ + + L++ ++ ++G +G+GK+T + + L P +GT
Sbjct: 2 SAIEVKNLVKKFH-GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGT 59
>gnl|CDD|227061 COG4717, COG4717, Uncharacterized conserved protein [Function
unknown].
Length = 984
Score = 37.5 bits (87), Expect = 0.016
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 6/51 (11%)
Query: 295 IYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTM----SMLTGYKRKSK 341
I GK D +++ V+ G N AGKST SML G+ SK
Sbjct: 8 IVGYGK--FSERHFDFGESKFQVIYGENEAGKSTLFSFIHSMLFGFPTSSK 56
Score = 34.4 bits (79), Expect = 0.13
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 357 IYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLI--IPTS 403
I GK D +++ V+ G N AGKST S + ++ PTS
Sbjct: 8 IVGYGK--FSERHFDFGESKFQVIYGENEAGKSTLFSFIHSMLFGFPTS 54
>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 214
Score = 36.0 bits (83), Expect = 0.021
Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 370 LDMYQNQITVLL--GHNGAGKSTTMSMLTGLIIPTSGTAYIDGH 411
LD + + LL G NGAGK+T + +L GL+ SG IDG
Sbjct: 30 LDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGK 73
>gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 272
Score = 36.3 bits (84), Expect = 0.022
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 295 IYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
+ + + + +L+L + ++T LLG NGAGKST + L G
Sbjct: 9 VARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAG 49
Score = 36.3 bits (84), Expect = 0.022
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 357 IYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 397
+ + + + +L+L + ++T LLG NGAGKST + L G
Sbjct: 9 VARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAG 49
>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed.
Length = 635
Score = 36.9 bits (86), Expect = 0.022
Identities = 29/107 (27%), Positives = 42/107 (39%), Gaps = 33/107 (30%)
Query: 361 GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGT---------AYIDGH 411
GK+ V + + + + L+G NG GK+T + ++ G + SG AY D H
Sbjct: 331 GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVAYFDQH 390
Query: 412 DIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAKGK---EFNGI 455
R L E TV D+L A+GK NG
Sbjct: 391 ---------RAELD---------PEKTVMDNL---AEGKQEVMVNGR 416
Score = 33.0 bits (76), Expect = 0.39
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 304 DNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
DN L + N+ L+G NGAGKST M +L G
Sbjct: 20 DNAELHIEDNERVCLVGRNGAGKSTLMKILNG 51
Score = 33.0 bits (76), Expect = 0.39
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 366 DNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 397
DN L + N+ L+G NGAGKST M +L G
Sbjct: 20 DNAELHIEDNERVCLVGRNGAGKSTLMKILNG 51
>gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 268
Score = 36.5 bits (84), Expect = 0.022
Identities = 19/62 (30%), Positives = 38/62 (61%), Gaps = 5/62 (8%)
Query: 357 IYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGL--IIP---TSGTAYIDGH 411
IY K+AV+++++D+ ++ +T L+G +G GKST + + + +IP + G +G
Sbjct: 29 IYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGL 88
Query: 412 DI 413
+I
Sbjct: 89 NI 90
Score = 36.5 bits (84), Expect = 0.023
Identities = 14/34 (41%), Positives = 26/34 (76%)
Query: 295 IYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKST 328
IY K+AV+++++D+ ++ +T L+G +G GKST
Sbjct: 29 IYYGEKRAVNDISMDIEKHAVTALIGPSGCGKST 62
>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit;
Provisional.
Length = 257
Score = 36.2 bits (84), Expect = 0.025
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 351 LRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSG 404
L ++K Y + ++ L L + Q ++G +G GKST + +L GL P++G
Sbjct: 15 LNAVSKRYG-ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAG 67
>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional.
Length = 1622
Score = 36.6 bits (85), Expect = 0.029
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 380 LLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIW-YEMGKVRESLGLCPQYDLLF 434
++G GAGKS+ ++ L ++ G IDG DI + + +R+ LG+ PQ +LF
Sbjct: 1270 IVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLF 1325
Score = 31.2 bits (71), Expect = 1.4
Identities = 25/103 (24%), Positives = 47/103 (45%), Gaps = 15/103 (14%)
Query: 359 KTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMG 418
K + + N+ LD+ + ++G G GK++ +S + G + P S + +
Sbjct: 627 KAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVV---------- 676
Query: 419 KVRESLGLCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRAL 461
+R ++ PQ +F TV D++ F G F+ Y RA+
Sbjct: 677 -IRGTVAYVPQVSWIFNA-TVRDNILF---GSPFDPERYERAI 714
>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 246
Score = 35.8 bits (82), Expect = 0.030
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 362 KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGL---IIPTSGTAYIDGHDI 413
K+A+ ++ + + QN+IT L+G +G GKST + + I G I+G D+
Sbjct: 15 KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDV 69
Score = 33.1 bits (75), Expect = 0.25
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 300 KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSKDIVNASGI 349
K+A+ ++ + + QN+IT L+G +G GKST L + R + I G+
Sbjct: 15 KQALFDINMQIEQNKITALIGASGCGKST---FLRCFNRMNDKIAKIDGL 61
>gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC
transporter, ATP-binding protein. Members of this
protein family are ABC transporter ATP-binding subunits,
part of a three-gene putative bacteriocin transport
operon. The other subunits include another ATP-binding
subunit (TIGR03796), which has an N-terminal leader
sequence cleavage domain, and an HlyD homolog
(TIGR03794). In a number of genomes, members of protein
families related to nitrile hydratase alpha subunit or
to nif11 have undergone paralogous family expansions,
with members possessing a putative bacteriocin cleavage
region ending with a classic Gly-Gly motif. Those sets
of putative bacteriocins, members of this protein family
and its partners TIGR03794 and TIGR03796, and
cyclodehydratase/docking scaffold fusion proteins of
thiazole/oxazole biosynthesis frequently show correlated
species distribution and co-clustering within many of
those genomes [Transport and binding proteins, Amino
acids, peptides and amines, Cellular processes,
Biosynthesis of natural products].
Length = 686
Score = 36.1 bits (84), Expect = 0.039
Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 380 LLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDI-WYEMGKVRESLG 425
++G +G+GKST + +L G P SG+ + DG D+ ++ VR LG
Sbjct: 484 IVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLG 530
>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 35.4 bits (81), Expect = 0.044
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 10/96 (10%)
Query: 357 IYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGL--IIP---TSGTAYIDGH 411
IY K+AV N+ LD+ + + L+G +G GK+T + + + + P +G +DG
Sbjct: 12 IYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQ 71
Query: 412 DIWYEMG----KVRESLGLCPQYDLLFEELTVEDHL 443
DI Y +R +G+ Q F ++V D++
Sbjct: 72 DI-YGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNV 106
Score = 30.0 bits (67), Expect = 2.3
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 295 IYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKST 328
IY K+AV N+ LD+ + + L+G +G GK+T
Sbjct: 12 IYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTT 45
>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein;
Provisional.
Length = 623
Score = 36.0 bits (83), Expect = 0.044
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 364 AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDI 413
AV+ ++ D++ + L+G +G+GKSTT L L+ G +G I
Sbjct: 339 AVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRI 388
Score = 31.7 bits (72), Expect = 0.89
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 302 AVDNLTLDMYQNQITVLLGHNGAGKSTT 329
AV+ ++ D++ + L+G +G+GKSTT
Sbjct: 339 AVEKVSFDLWPGETLSLVGESGSGKSTT 366
>gnl|CDD|225638 COG3096, MukB, Uncharacterized protein involved in chromosome
partitioning [Cell division and chromosome
partitioning].
Length = 1480
Score = 36.0 bits (83), Expect = 0.047
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 369 TLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIP 401
T D+ +T L G NGAGKSTTM+ +IP
Sbjct: 22 TFDL-DELVTTLSGGNGAGKSTTMAAFVTALIP 53
Score = 32.9 bits (75), Expect = 0.43
Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 307 TLDMYQNQITVLLGHNGAGKSTTMS 331
T D+ +T L G NGAGKSTTM+
Sbjct: 22 TFDL-DELVTTLSGGNGAGKSTTMA 45
>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 269
Score = 35.2 bits (81), Expect = 0.050
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 339 KSKDIVNASGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGL 398
+K I I L+ +T Y T +AV N+ D+ + ++T L+G +G GKST + L +
Sbjct: 4 TNKKISKNIIISLQNVTISYGT-FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRM 62
Query: 399 --IIPT---SGTAYIDGHDIW 414
+I G DG D++
Sbjct: 63 NDLIEGCSLKGRVLFDGTDLY 83
Score = 30.9 bits (70), Expect = 1.2
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 302 AVDNLTLDMYQNQITVLLGHNGAGKSTTMSML 333
AV N+ D+ + ++T L+G +G GKST + L
Sbjct: 28 AVKNVFCDIPRGKVTALIGPSGCGKSTVLRSL 59
>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein;
Provisional.
Length = 264
Score = 35.1 bits (81), Expect = 0.050
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 364 AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGL--IIPT---SGTAYIDGHDIW---Y 415
AV N+ LD+ +NQIT +G +G GKST + L +IP G G +++
Sbjct: 25 AVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDV 84
Query: 416 EMGKVRESLGLCPQ 429
+ +VR +G+ Q
Sbjct: 85 DPVEVRRRIGMVFQ 98
Score = 34.8 bits (80), Expect = 0.082
Identities = 15/27 (55%), Positives = 20/27 (74%)
Query: 302 AVDNLTLDMYQNQITVLLGHNGAGKST 328
AV N+ LD+ +NQIT +G +G GKST
Sbjct: 25 AVKNVWLDIPKNQITAFIGPSGCGKST 51
>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 258
Score = 35.4 bits (81), Expect = 0.050
Identities = 18/70 (25%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 300 KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSKDIVNASGIQLRGLTK--- 356
K+A+ N+++ + +N +T L+G +G GKST + L + D++ I+ + +
Sbjct: 25 KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLN----RMNDLIKNCRIEGKVSIEGED 80
Query: 357 IYKTGKKAVD 366
IY+ V+
Sbjct: 81 IYEPDVDVVE 90
Score = 35.0 bits (80), Expect = 0.066
Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 10/77 (12%)
Query: 362 KKAVDNLTLDMYQNQITVLLGHNGAGKST---TMSMLTGLI--IPTSGTAYIDGHDIWYE 416
K+A+ N+++ + +N +T L+G +G GKST ++ + LI G I+G DI YE
Sbjct: 25 KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDI-YE 83
Query: 417 MG----KVRESLGLCPQ 429
++R+++G+ Q
Sbjct: 84 PDVDVVELRKNVGMVFQ 100
>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter
subunit; Provisional.
Length = 262
Score = 35.0 bits (80), Expect = 0.055
Identities = 17/51 (33%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLI 399
I++ L K + +A+ + L+++ ++ LLG +G+GKST + L+GLI
Sbjct: 5 IRVEKLAKTFNQ-HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLI 54
Score = 32.3 bits (73), Expect = 0.42
Identities = 21/66 (31%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 301 KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSKDIVNASGIQLRGLTKIYKT 360
+A+ + L+++ ++ LLG +G+GKST + L+G + D S I+L G T + +
Sbjct: 18 QALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGL--ITGDKSAGSHIELLGRT-VQRE 74
Query: 361 GKKAVD 366
G+ A D
Sbjct: 75 GRLARD 80
>gnl|CDD|205733 pfam13555, AAA_29, P-loop containing region of AAA domain.
Length = 60
Score = 32.1 bits (74), Expect = 0.059
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 378 TVLLGHNGAGKSTTMSMLTGLIIPTSGTAY 407
T+L G +G+GKST + + L++P A+
Sbjct: 24 TLLTGPSGSGKSTLIDAIQTLLVPAKRVAF 53
Score = 28.3 bits (64), Expect = 1.4
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 316 TVLLGHNGAGKSTTM 330
T+L G +G+GKST +
Sbjct: 24 TLLTGPSGSGKSTLI 38
>gnl|CDD|234631 PRK00098, PRK00098, GTPase RsgA; Reviewed.
Length = 298
Score = 35.2 bits (82), Expect = 0.063
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 4/28 (14%)
Query: 374 QNQITVLLGHNGAGKSTTMSMLTGLIIP 401
++TVL G +G GKST L + P
Sbjct: 163 AGKVTVLAGQSGVGKST----LLNALAP 186
Score = 32.9 bits (76), Expect = 0.32
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 312 QNQITVLLGHNGAGKST 328
++TVL G +G GKST
Sbjct: 163 AGKVTVLAGQSGVGKST 179
>gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 286
Score = 34.9 bits (80), Expect = 0.068
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 8/85 (9%)
Query: 357 IYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGL--IIP---TSGTAYIDGH 411
IY +AV + D+ +T ++G +G GKST + + + +IP T+G DG
Sbjct: 47 IYYGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGE 106
Query: 412 DIWYEMGKVRESLGLCPQYDLLFEE 436
DI+ GK + + L + ++F++
Sbjct: 107 DIY---GKFTDEVLLRKKIGMVFQK 128
>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 329
Score = 34.7 bits (79), Expect = 0.083
Identities = 36/126 (28%), Positives = 61/126 (48%), Gaps = 17/126 (13%)
Query: 341 KDIVNASGIQLRGLTKIYKTGKKAV-DNLTLDMYQNQITVLLGHNGAGKST---TMSMLT 396
+D +A+ ++R Y K V +L LD+ +N++T +G +G GKST ++ L
Sbjct: 73 EDFNHANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLN 132
Query: 397 GLIIPTS--GTAYIDGHDIWYEMGKVRESLGLCPQYDLLFE-----ELTVEDHLQFFAKG 449
LI TS G Y G + K SL L + ++F+ E+++ D++ + G
Sbjct: 133 DLIEGTSHEGEIYFLGTNT---RSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAY---G 186
Query: 450 KEFNGI 455
NGI
Sbjct: 187 PRNNGI 192
Score = 30.9 bits (69), Expect = 1.5
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 300 KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSML 333
K + +L LD+ +N++T +G +G GKST + L
Sbjct: 95 KHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNL 128
>gnl|CDD|206747 cd01854, YjeQ_EngC, Ribosomal interacting GTPase YjeQ/EngC, a
circularly permuted subfamily of the Ras GTPases. YjeQ
(YloQ in Bacillus subtilis) is a ribosomal small
subunit-dependent GTPase; hence also known as RsgA. YjeQ
is a late-stage ribosomal biogenesis factor involved in
the 30S subunit maturation, and it represents a protein
family whose members are broadly conserved in bacteria
and have been shown to be essential to the growth of E.
coli and B. subtilis. Proteins of the YjeQ family
contain all sequence motifs typical of the vast class of
P-loop-containing GTPases, but show a circular
permutation, with a G4-G1-G3 pattern of motifs as
opposed to the regular G1-G3-G4 pattern seen in most
GTPases. All YjeQ family proteins display a unique
domain architecture, which includes an N-terminal
OB-fold RNA-binding domain, the central permuted GTPase
domain, and a zinc knuckle-like C-terminal cysteine
domain.
Length = 211
Score = 34.3 bits (80), Expect = 0.086
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 312 QNQITVLLGHNGAGKSTTMSMLTG 335
+ + +VL+G +G GKST ++ L
Sbjct: 84 KGKTSVLVGQSGVGKSTLLNALLP 107
Score = 34.3 bits (80), Expect = 0.086
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 374 QNQITVLLGHNGAGKSTTMSMLTG 397
+ + +VL+G +G GKST ++ L
Sbjct: 84 KGKTSVLVGQSGVGKSTLLNALLP 107
>gnl|CDD|113093 pfam04310, MukB, MukB N-terminal. This family represents the
N-terminal region of MukB, one of a group of bacterial
proteins essential for the movement of nucleoids from
mid-cell towards the cell quarters (i.e. chromosome
partitioning). The structure of the N-terminal domain
consists of an antiparallel six-stranded beta sheet
surrounded by one helix on one side and by five helices
on the other side. It contains an exposed Walker A loop
in an unexpected helix-loop-helix motif (in other
proteins, Walker A motifs generally adopt a P loop
conformation as part of a strand-loop-helix motif
embedded in a conserved topology of alternating helices
and (parallel) beta strands).
Length = 227
Score = 34.2 bits (78), Expect = 0.092
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 369 TLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIP 401
T D+ +T L G NGAGKSTTM+ +IP
Sbjct: 22 TFDI-DELVTTLSGGNGAGKSTTMAAFITALIP 53
Score = 30.7 bits (69), Expect = 1.3
Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 307 TLDMYQNQITVLLGHNGAGKSTTMS 331
T D+ +T L G NGAGKSTTM+
Sbjct: 22 TFDI-DELVTTLSGGNGAGKSTTMA 45
>gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase
component [Coenzyme metabolism].
Length = 248
Score = 34.4 bits (79), Expect = 0.093
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 368 LTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDI 413
L+ ++ +I L+G NGAGKST ++ + G+ SG+ G +
Sbjct: 18 LSGEVRAGEILHLVGPNGAGKSTLLARMAGM-TSGSGSIQFAGQPL 62
>gnl|CDD|221957 pfam13175, AAA_15, AAA ATPase domain. This family of domains
contain a P-loop motif that is characteristic of the AAA
superfamily.
Length = 320
Score = 34.7 bits (80), Expect = 0.094
Identities = 24/99 (24%), Positives = 39/99 (39%), Gaps = 6/99 (6%)
Query: 292 LTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYK-RKSKDIVNASG-- 348
L KI K++ NL I V++G NG+GK+T + L K +K I +
Sbjct: 1 LKKIKIKNFKSIKNLEEISLNEGINVIIGENGSGKTTILEALDNLKEKKKIYISISDNKA 60
Query: 349 -IQLRGLTKIYK--TGKKAVDNLTLDMYQNQITVLLGHN 384
I L K K ++ + ++ I L +
Sbjct: 61 DIDKENLNKKSKKIKISIIIELSSNEIKSFSIKFYLNYY 99
Score = 33.2 bits (76), Expect = 0.25
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 7/74 (9%)
Query: 354 LTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGL-------IIPTSGTA 406
L KI K++ NL I V++G NG+GK+T + L L I + A
Sbjct: 1 LKKIKIKNFKSIKNLEEISLNEGINVIIGENGSGKTTILEALDNLKEKKKIYISISDNKA 60
Query: 407 YIDGHDIWYEMGKV 420
ID ++ + K+
Sbjct: 61 DIDKENLNKKSKKI 74
>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein;
Provisional.
Length = 260
Score = 34.2 bits (79), Expect = 0.096
Identities = 20/43 (46%), Positives = 28/43 (65%), Gaps = 3/43 (6%)
Query: 349 IQLRGLTKIYKTGK-KAVDNLTLDMYQNQITVLLGHNGAGKST 390
IQ+R L Y GK A+ N+ LD+ +NQ+T +G +G GKST
Sbjct: 14 IQVRNLNFYY--GKFHALKNINLDIAKNQVTAFIGPSGCGKST 54
Score = 31.1 bits (71), Expect = 1.0
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 301 KAVDNLTLDMYQNQITVLLGHNGAGKST 328
A+ N+ LD+ +NQ+T +G +G GKST
Sbjct: 27 HALKNINLDIAKNQVTAFIGPSGCGKST 54
>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 34.4 bits (79), Expect = 0.10
Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 12/119 (10%)
Query: 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLI-----IPTS 403
I+ L ++Y + + L + QN + L+G +G GKST + L+
Sbjct: 5 IETVNL-RVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVE 63
Query: 404 GTAYIDGHDIWYEMG---KVRESLGLCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGR 459
G + G +I+ +VR +G+ QY F LT+ D++ A G + NG+ +
Sbjct: 64 GEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNV---AIGVKLNGLVKSK 119
>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional.
Length = 1470
Score = 34.8 bits (80), Expect = 0.11
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 8/75 (10%)
Query: 377 ITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESL----GLCPQYDL 432
+T L+G +GAGK+T M +L G T G YI+G K +E+ G C Q D+
Sbjct: 908 LTALMGVSGAGKTTLMDVLAGR--KTGG--YIEGDIRISGFPKKQETFARISGYCEQNDI 963
Query: 433 LFEELTVEDHLQFFA 447
++TV + L + A
Sbjct: 964 HSPQVTVRESLIYSA 978
Score = 29.4 bits (66), Expect = 5.9
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 315 ITVLLGHNGAGKSTTMSMLTGYK 337
+T L+G +GAGK+T M +L G K
Sbjct: 908 LTALMGVSGAGKTTLMDVLAGRK 930
>gnl|CDD|217416 pfam03193, DUF258, Protein of unknown function, DUF258.
Length = 161
Score = 33.3 bits (77), Expect = 0.12
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 312 QNQITVLLGHNGAGKSTTMSMLTG 335
+ + +VL G +G GKST ++ L
Sbjct: 34 KGKTSVLAGQSGVGKSTLLNALLP 57
Score = 33.3 bits (77), Expect = 0.12
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 374 QNQITVLLGHNGAGKSTTMSMLTG 397
+ + +VL G +G GKST ++ L
Sbjct: 34 KGKTSVLAGQSGVGKSTLLNALLP 57
>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 249
Score = 34.0 bits (78), Expect = 0.12
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
Query: 363 KAVDNLTLDMYQNQITVLLGHNGAGKST---TMSMLTGLI--IPTSGTAYIDGHDIW 414
+A+ ++ L + Q+T L+G +G GKST ++ + LI + +G +DG DI+
Sbjct: 17 QALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIY 73
Score = 29.4 bits (66), Expect = 3.8
Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Query: 301 KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSKDIVNASGIQLRGLTKI 357
+A+ ++ L + Q+T L+G +G GKST + L + D++ G+++ G +
Sbjct: 17 QALKSINLPIPARQVTALIGPSGCGKSTLLRCLN----RMNDLI--EGVKITGKLTM 67
>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 33.9 bits (77), Expect = 0.12
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSML 395
I++RG+ Y + + N+ +D + QIT ++G +G GKST + L
Sbjct: 5 IKIRGVNFFYHK-HQVLKNINMDFPERQITAIIGPSGCGKSTLLRAL 50
Score = 33.1 bits (75), Expect = 0.26
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 6/53 (11%)
Query: 301 KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSKDIVNASGIQLRG 353
+ + N+ +D + QIT ++G +G GKST + L + DIV SG +L G
Sbjct: 18 QVLKNINMDFPERQITAIIGPSGCGKSTLLRALN----RMNDIV--SGARLEG 64
>gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 285
Score = 34.0 bits (78), Expect = 0.13
Identities = 12/28 (42%), Positives = 24/28 (85%)
Query: 301 KAVDNLTLDMYQNQITVLLGHNGAGKST 328
+A+D++++D+ +NQ+T ++G +G GKST
Sbjct: 53 QALDDVSMDIPENQVTAMIGPSGCGKST 80
Score = 34.0 bits (78), Expect = 0.13
Identities = 12/28 (42%), Positives = 24/28 (85%)
Query: 363 KAVDNLTLDMYQNQITVLLGHNGAGKST 390
+A+D++++D+ +NQ+T ++G +G GKST
Sbjct: 53 QALDDVSMDIPENQVTAMIGPSGCGKST 80
>gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 200
Score = 33.4 bits (76), Expect = 0.15
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 380 LLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDI 413
L G NGAGK+T + ++ GL+ P G + I
Sbjct: 32 LKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSI 65
>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional.
Length = 1495
Score = 34.6 bits (79), Expect = 0.15
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 8/96 (8%)
Query: 347 SGIQLRGLTKI------YKTGKKAV-DNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLI 399
SG RG K Y+ G V L+ + ++ ++G GAGKS+ ++ L ++
Sbjct: 1227 SGWPSRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIV 1286
Query: 400 IPTSGTAYIDGHDIW-YEMGKVRESLGLCPQYDLLF 434
G ID D+ + + +R L + PQ +LF
Sbjct: 1287 ELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLF 1322
>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional.
Length = 659
Score = 34.1 bits (78), Expect = 0.16
Identities = 34/133 (25%), Positives = 55/133 (41%), Gaps = 25/133 (18%)
Query: 321 HNGAGKSTTMSMLTGYKRKSKDIVNASGIQ----LRGLTKIYKTGKKAVDNLTLDMYQNQ 376
N K + + + G+K K D IQ L G+T + G +
Sbjct: 52 ENMKNKGSNIKRILGHKPKISDETRQ--IQERTILNGVTGMASPG--------------E 95
Query: 377 ITVLLGHNGAGKSTTMSMLTGLIIPTS--GTAYIDGHDIWYEMGKVRESLGLCPQYDLLF 434
I +LG +G+GKST ++ L G I + GT + ++ + G Q D+L+
Sbjct: 96 ILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKP---TKQILKRTGFVTQDDILY 152
Query: 435 EELTVEDHLQFFA 447
LTV + L F +
Sbjct: 153 PHLTVRETLVFCS 165
>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 588
Score = 34.1 bits (79), Expect = 0.18
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
Query: 299 GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG---YKRKSKDIVNASGIQLRGL 354
GK L + Q L+G +GAGK++ ++ L G Y+ K +N GI+LR L
Sbjct: 362 GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPYQGSLK--IN--GIELREL 416
Score = 33.3 bits (77), Expect = 0.26
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 361 GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDG 410
GK L + Q L+G +GAGK++ ++ L G +P G+ I+G
Sbjct: 362 GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGF-LPYQGSLKING 410
>gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 330
Score = 33.7 bits (77), Expect = 0.19
Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 349 IQLRGLTKIYKTGK---KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLI 399
+ +R LT +KT + KAVD +++ + + +I L+G +G+GKS + G+
Sbjct: 4 LDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVN 57
Score = 31.0 bits (70), Expect = 1.2
Identities = 11/27 (40%), Positives = 20/27 (74%)
Query: 301 KAVDNLTLDMYQNQITVLLGHNGAGKS 327
KAVD +++ + + +I L+G +G+GKS
Sbjct: 21 KAVDRVSMTLNEGEIRGLVGESGSGKS 47
>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 33.3 bits (76), Expect = 0.22
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Query: 361 GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGL--IIP---TSGTAYIDGHDIW 414
K+ + ++ LD+Y+ ++T +G +G GKST + + +P G IDG D++
Sbjct: 17 SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVY 75
Score = 32.1 bits (73), Expect = 0.45
Identities = 11/30 (36%), Positives = 21/30 (70%)
Query: 299 GKKAVDNLTLDMYQNQITVLLGHNGAGKST 328
K+ + ++ LD+Y+ ++T +G +G GKST
Sbjct: 17 SKQILFDINLDIYKREVTAFIGPSGCGKST 46
>gnl|CDD|130724 TIGR01663, PNK-3'Pase, polynucleotide 5'-kinase 3'-phosphatase.
This model represents the metazoan
5'-polynucleotide-kinase-3'-phosphatase, PNKP, which is
believed to be involved in repair of oxidative DNA
damage. Removal of 3' phosphates is essential for the
further processing of the break by DNA polymerases. The
central phosphatase domain is a member of the IIIA
subfamily (TIGR01662) of the haloacid dehalogenase (HAD)
superfamily of aspartate-nucleophile hydrolases. As is
common in this superfamily, the enzyme is magnesium
dependent. A difference between this enzyme and other
HAD-superfamily phosphatases is in the third conserved
catalytic motif which usually contains two conserved
aspartate residues believed to be involved in binding
the magnesium ion. Here, the second aspartate is
replaced by a conserved arginine residue which may
indicate an interaction with the phosphate backbone of
the substrate. Very close relatives of this domain are
also found separate from the N- and C-terminal domains
seen here, as in the 3'-phosphatase found in plants. The
larger family of these domains is described by
TIGR01664. Outside of the phosphatase domain is a P-loop
ATP-binding motif associated with the kinase activity.
The entry for the mouse homolog, GP|7108591, appears to
be missing a large piece of sequence corresponding to
the first conserved catalytic motif of the phosphatase
domain as well as the conserved threonine of the second
motif. Either this is a sequencing artifact or this may
represent a pseudo- or non-functional gene. Note that
the EC number for the kinase function is: 2.7.1.78.
Length = 526
Score = 33.5 bits (76), Expect = 0.24
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Query: 304 DNLTLDMYQNQITVLLGHNGAGKSTTMSML---TGYKRKSKDIVNASGIQLRGLTKIYKT 360
D+L LD ++ + +G GAGKS GYK + D + ++ L +
Sbjct: 360 DDLALDDAPCEMVIAVGFPGAGKSHFCKKFFQPAGYKHVNADTLGSTQNCLTACERALDQ 419
Query: 361 GKK-AVDNLTLD 371
GK+ A+DN D
Sbjct: 420 GKRCAIDNTNPD 431
>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 265
Score = 33.1 bits (75), Expect = 0.28
Identities = 13/33 (39%), Positives = 23/33 (69%)
Query: 296 YKTGKKAVDNLTLDMYQNQITVLLGHNGAGKST 328
Y G +A+ N+ + +++ Q+T L+G +G GKST
Sbjct: 25 YYGGYQALKNINMMVHEKQVTALIGPSGCGKST 57
Score = 33.1 bits (75), Expect = 0.28
Identities = 13/33 (39%), Positives = 23/33 (69%)
Query: 358 YKTGKKAVDNLTLDMYQNQITVLLGHNGAGKST 390
Y G +A+ N+ + +++ Q+T L+G +G GKST
Sbjct: 25 YYGGYQALKNINMMVHEKQVTALIGPSGCGKST 57
>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1);
Provisional.
Length = 1466
Score = 33.5 bits (76), Expect = 0.29
Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 14/103 (13%)
Query: 341 KDIVNASGIQLRGLTKIYKTGK--KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGL 398
K + + IQ + + Y T K + +L + + + +G +G GKST + ++ L
Sbjct: 375 KKLKDIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERL 434
Query: 399 IIPTSGTAYI-DGHDI------WYEMGKVRESLGLCPQYDLLF 434
PT G I D H++ W+ R +G+ Q LLF
Sbjct: 435 YDPTEGDIIINDSHNLKDINLKWW-----RSKIGVVSQDPLLF 472
Score = 32.7 bits (74), Expect = 0.56
Identities = 36/149 (24%), Positives = 65/149 (43%), Gaps = 15/149 (10%)
Query: 305 NLTLDMYQNQITVLLGHNGAGKSTTMSMLTG-YKRKSKDIVNASGIQLRGLTKIYKTGKK 363
+LT + T ++G G+GKST MS+L Y K+ + +T
Sbjct: 1186 DLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGD 1245
Query: 364 AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIW-YEMGKVRE 422
N+ + N+ + L G+G+ +T + SG +DG DI Y + +R
Sbjct: 1246 EEQNVGMKNV-NEFS-LTKEGGSGEDST-------VFKNSGKILLDGVDICDYNLKDLRN 1296
Query: 423 SLGLCPQYDLLFEELTVEDHLQFFAKGKE 451
+ Q +LF +++ ++++F GKE
Sbjct: 1297 LFSIVSQEPMLF-NMSIYENIKF---GKE 1321
>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of
multidrug resistance-associated protein, subfamily C.
This subfamily is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resisting lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 204
Score = 32.4 bits (75), Expect = 0.30
Identities = 19/94 (20%), Positives = 42/94 (44%), Gaps = 16/94 (17%)
Query: 360 TGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGK 419
+ ++ L++ + ++ ++G G+GKS+ +S L G + SG+ + G
Sbjct: 16 ETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG--------- 66
Query: 420 VRESLGLCPQYDLLFEELTVEDHLQFFAKGKEFN 453
S+ Q + T+ +++ F GK F+
Sbjct: 67 ---SIAYVSQEPWIQNG-TIRENILF---GKPFD 93
>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of
peroxisomal transporter, subfamily D. Peroxisomal
ATP-binding cassette transporter (Pat) is involved in
the import of very long-chain fatty acids (VLCFA) into
the peroxisome. The peroxisomal membrane forms a
permeability barrier for a wide variety of metabolites
required for and formed during fatty acid
beta-oxidation. To communicate with the cytoplasm and
mitochondria, peroxisomes need dedicated proteins to
transport such hydrophilic molecules across their
membranes. X-linked adrenoleukodystrophy (X-ALD) is
caused by mutations in the ALD gene, which encodes ALDP
(adrenoleukodystrophy protein ), a peroxisomal integral
membrane protein that is a member of the ATP-binding
cassette (ABC) transporter protein family. The disease
is characterized by a striking and unpredictable
variation in phenotypic expression. Phenotypes include
the rapidly progressive childhood cerebral form (CCALD),
the milder adult form, adrenomyeloneuropathy (AMN), and
variants without neurologic involvement (i.e.
asymptomatic).
Length = 166
Score = 32.1 bits (74), Expect = 0.30
Identities = 13/50 (26%), Positives = 25/50 (50%)
Query: 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGL 398
I+L L+ G+ + +L+ ++ ++ G +G GKS+ L GL
Sbjct: 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGL 50
>gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding
protein. Members of this protein family are the
ATP-binding subunit of a three-protein transporter. This
family belongs, more broadly, to the family of proline
and glycine-betaine transporters, but members have been
identified by direct characterization and by
bioinformatic means as choline transporters. Many
species have several closely-related members of this
family, probably with variable abilities to act
additionally on related quaternary amines [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 382
Score = 33.2 bits (76), Expect = 0.31
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 364 AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGL 398
V N +LD+ + +I VL+G +G+GKST + + GL
Sbjct: 39 GVHNASLDIEEGEICVLMGLSGSGKSTLLRAVNGL 73
Score = 31.7 bits (72), Expect = 0.79
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 12/65 (18%)
Query: 302 AVDNLTLDMYQNQITVLLGHNGAGKSTTM------------SMLTGYKRKSKDIVNASGI 349
V N +LD+ + +I VL+G +G+GKST + S+L S D+ N
Sbjct: 39 GVHNASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAA 98
Query: 350 QLRGL 354
LR L
Sbjct: 99 TLRRL 103
>gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette
domain 1 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI s are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLIs have an N-terminal Fe-S domain and
two nucleotide binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 255
Score = 32.7 bits (75), Expect = 0.32
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 376 QITVLLGHNGAGKSTTMSMLTGLIIPTSG 404
Q+ L+G NG GKST + +L G + P G
Sbjct: 27 QVLGLVGPNGIGKSTALKILAGKLKPNLG 55
Score = 28.9 bits (65), Expect = 5.1
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 314 QITVLLGHNGAGKSTTMSMLTG 335
Q+ L+G NG GKST + +L G
Sbjct: 27 QVLGLVGPNGIGKSTALKILAG 48
>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional.
Length = 718
Score = 33.3 bits (76), Expect = 0.32
Identities = 12/28 (42%), Positives = 21/28 (75%)
Query: 380 LLGHNGAGKSTTMSMLTGLIIPTSGTAY 407
++G NG GKST + +++G + P+SGT +
Sbjct: 540 MVGPNGIGKSTILKLISGELQPSSGTVF 567
>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 32.5 bits (74), Expect = 0.38
Identities = 12/29 (41%), Positives = 22/29 (75%)
Query: 300 KKAVDNLTLDMYQNQITVLLGHNGAGKST 328
K A+ ++T+ + +N++T L+G +G GKST
Sbjct: 19 KHALYDITISIPKNRVTALIGPSGCGKST 47
Score = 32.5 bits (74), Expect = 0.38
Identities = 12/29 (41%), Positives = 22/29 (75%)
Query: 362 KKAVDNLTLDMYQNQITVLLGHNGAGKST 390
K A+ ++T+ + +N++T L+G +G GKST
Sbjct: 19 KHALYDITISIPKNRVTALIGPSGCGKST 47
>gnl|CDD|222258 pfam13604, AAA_30, AAA domain. This family of domains contain a
P-loop motif that is characteristic of the AAA
superfamily. Many of the proteins in this family are
conjugative transfer proteins. There is a Walker A and
Walker B.
Length = 195
Score = 31.8 bits (73), Expect = 0.48
Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 13/69 (18%)
Query: 300 KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSKDIVNASGIQLRGLTKIYK 359
++AV ++ +++ V+ G G GK+T++ ++ A+G ++ GL
Sbjct: 7 REAVRHVLTS--GDRVAVVQGPAGTGKTTSLKAA-------REAWEAAGYRVIGLA---P 54
Query: 360 TGKKAVDNL 368
TG KA L
Sbjct: 55 TG-KAAKVL 62
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 32.8 bits (75), Expect = 0.52
Identities = 24/119 (20%), Positives = 37/119 (31%), Gaps = 29/119 (24%)
Query: 312 QNQITVLLGHNGAGKSTTMSMLTGYKRKSKDIVNASGIQLRGLTKIYKTGKKAVDNLTLD 371
+ I +++G NGAGKS+ I++A L G T D +
Sbjct: 24 DSGIFLIVGPNGAGKSS--------------ILDAITFALYGKTPRLGAFSLD-DLIRAG 68
Query: 372 MYQNQITVLLGHNGA--------GKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRE 422
+ + NG + S + II +DG I V E
Sbjct: 69 EKSASVELEFEVNGKKYRIEREFRRGRGQSTGSLQII------EVDGERIADGKKDVNE 121
>gnl|CDD|224084 COG1162, COG1162, Predicted GTPases [General function prediction
only].
Length = 301
Score = 31.9 bits (73), Expect = 0.58
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 312 QNQITVLLGHNGAGKSTTMSMLTG 335
+ITVLLG +G GKST ++ L
Sbjct: 163 AGKITVLLGQSGVGKSTLINALLP 186
Score = 31.9 bits (73), Expect = 0.58
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 374 QNQITVLLGHNGAGKSTTMSMLTG 397
+ITVLLG +G GKST ++ L
Sbjct: 163 AGKITVLLGQSGVGKSTLINALLP 186
>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 31.8 bits (72), Expect = 0.58
Identities = 13/36 (36%), Positives = 24/36 (66%)
Query: 364 AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLI 399
A+ N+ L + +N++T ++G +G GKST + L +I
Sbjct: 27 ALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMI 62
Score = 31.4 bits (71), Expect = 0.81
Identities = 12/32 (37%), Positives = 22/32 (68%)
Query: 302 AVDNLTLDMYQNQITVLLGHNGAGKSTTMSML 333
A+ N+ L + +N++T ++G +G GKST + L
Sbjct: 27 ALKNINLSIPENEVTAIIGPSGCGKSTFIKTL 58
>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 31.9 bits (72), Expect = 0.60
Identities = 19/75 (25%), Positives = 41/75 (54%), Gaps = 8/75 (10%)
Query: 363 KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGL-----IIPTSGTAYIDGHDIW--- 414
+A+ ++LD + ++T L+G +G GKST + L + I +G +G +I+
Sbjct: 18 EALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSK 77
Query: 415 YEMGKVRESLGLCPQ 429
++ ++R+ +G+ Q
Sbjct: 78 MDLVELRKEVGMVFQ 92
Score = 30.4 bits (68), Expect = 1.7
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 301 KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSKDIVN 345
+A+ ++LD + ++T L+G +G GKST + L R + DI N
Sbjct: 18 EALHGISLDFEEKELTALIGPSGCGKSTFLRCLN---RMNDDIEN 59
>gnl|CDD|218745 pfam05783, DLIC, Dynein light intermediate chain (DLIC). This
family consists of several eukaryotic dynein light
intermediate chain proteins. The light intermediate
chains (LICs) of cytoplasmic dynein consist of multiple
isoforms, which undergo post-translational modification
to produce a large number of species. DLIC1 is known to
be involved in assembly, organisation, and function of
centrosomes and mitotic spindles when bound to
pericentrin. DLIC2 is a subunit of cytoplasmic dynein 2
that may play a role in maintaining Golgi organisation
by binding cytoplasmic dynein 2 to its Golgi-associated
cargo.
Length = 490
Score = 31.7 bits (72), Expect = 0.89
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Query: 375 NQITVLLGHNGAGKSTTMSMLTGLIIPTSGT----AYIDGHD 412
+ ++LG +G+GK+T ++ L G+ P G Y++ HD
Sbjct: 45 GKNVLVLGEDGSGKTTLIAKLQGVEHPKKGRGLEYLYLNVHD 86
>gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 31.2 bits (71), Expect = 0.90
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 295 IYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKST 328
+Y K+A+ + + +N+IT L+G +G+GKST
Sbjct: 28 VYYGKKEAIKGIDMQFEKNKITALIGPSGSGKST 61
Score = 31.2 bits (71), Expect = 0.90
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 357 IYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKST 390
+Y K+A+ + + +N+IT L+G +G+GKST
Sbjct: 28 VYYGKKEAIKGIDMQFEKNKITALIGPSGSGKST 61
>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 305
Score = 31.3 bits (71), Expect = 0.91
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 357 IYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGL-----IIPTSGTAYIDGH 411
+Y A+ +++D+ + +T L+G +G GKST + L + G+ +DG
Sbjct: 53 VYYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQ 112
Query: 412 DIWYE 416
DI+ +
Sbjct: 113 DIYQD 117
Score = 29.8 bits (67), Expect = 3.3
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 295 IYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSML 333
+Y A+ +++D+ + +T L+G +G GKST + L
Sbjct: 53 VYYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCL 91
>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding
protein ModF; Provisional.
Length = 490
Score = 31.5 bits (72), Expect = 0.92
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 345 NASGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 397
N I L Y + + NL+ + + ++G NGAGKST +S++TG
Sbjct: 257 NEPRIVLNNGVVSYND-RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITG 308
Score = 31.5 bits (72), Expect = 0.97
Identities = 11/18 (61%), Positives = 16/18 (88%)
Query: 318 LLGHNGAGKSTTMSMLTG 335
++G NGAGKST +S++TG
Sbjct: 291 IVGPNGAGKSTLLSLITG 308
>gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50. The
catalytic domains of Rad50 are similar to the
ATP-binding cassette of ABC transporters, but are not
associated with membrane-spanning domains. The conserved
ATP-binding motifs common to Rad50 and the ABC
transporter family include the Walker A and Walker B
motifs, the Q loop, a histidine residue in the switch
region, a D-loop, and a conserved LSGG sequence. This
conserved sequence, LSGG, is the most specific and
characteristic motif of this family and is thus known as
the ABC signature sequence.
Length = 204
Score = 30.7 bits (70), Expect = 1.1
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 4/31 (12%)
Query: 377 ITVLLGHNGAGKSTTMS----MLTGLIIPTS 403
+T+++G NGAGK+T + LTG + P S
Sbjct: 24 LTLIVGQNGAGKTTIIEALKYALTGELPPNS 54
Score = 30.3 bits (69), Expect = 1.7
Identities = 8/14 (57%), Positives = 13/14 (92%)
Query: 315 ITVLLGHNGAGKST 328
+T+++G NGAGK+T
Sbjct: 24 LTLIVGQNGAGKTT 37
>gnl|CDD|227341 COG5008, PilU, Tfp pilus assembly protein, ATPase PilU [Cell
motility and secretion / Intracellular trafficking and
secretion].
Length = 375
Score = 31.3 bits (71), Expect = 1.2
Identities = 12/32 (37%), Positives = 22/32 (68%)
Query: 308 LDMYQNQITVLLGHNGAGKSTTMSMLTGYKRK 339
L + + + +++G G+GKSTTM+ + GY+ K
Sbjct: 122 LALAKRGLVIIVGATGSGKSTTMAAMIGYRNK 153
>gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter
ATP-binding protein; Provisional.
Length = 330
Score = 30.9 bits (70), Expect = 1.3
Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 3/44 (6%)
Query: 349 IQLRGLTKIYKTGK---KAVDNLTLDMYQNQITVLLGHNGAGKS 389
+ +R LT +KT KAVD +++ + + +I L+G +G+GKS
Sbjct: 4 LDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKS 47
>gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component;
Provisional.
Length = 330
Score = 30.8 bits (70), Expect = 1.3
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 364 AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIP---TSGTAYIDGHDI 413
AV++L + + ++G +G+GKS T L GL+ G+A +G +I
Sbjct: 31 AVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREI 83
>gnl|CDD|223571 COG0497, RecN, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 557
Score = 30.6 bits (70), Expect = 1.8
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Query: 303 VDNLTLDMYQNQITVLLGHNGAGKS---TTMSMLTGYK 337
++ L L+ ++ +TVL G GAGKS + +L G +
Sbjct: 13 IEELELE-FEKGLTVLTGETGAGKSIIIDALGLLLGGR 49
Score = 29.1 bits (66), Expect = 6.5
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Query: 365 VDNLTLDMYQNQITVLLGHNGAGKS---TTMSMLTGL 398
++ L L+ ++ +TVL G GAGKS + +L G
Sbjct: 13 IEELELE-FEKGLTVLTGETGAGKSIIIDALGLLLGG 48
>gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 326
Score = 30.5 bits (69), Expect = 1.8
Identities = 12/41 (29%), Positives = 24/41 (58%)
Query: 359 KTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLI 399
+AVD ++ + Q ++ ++G +G+GKS + + GLI
Sbjct: 17 SAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLI 57
>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein
YbbA; Provisional.
Length = 228
Score = 30.1 bits (68), Expect = 1.9
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 376 QITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDI 413
+ L+G +G+GKST +++L GL +SG + G +
Sbjct: 37 ETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPL 74
>gnl|CDD|222036 pfam13304, AAA_21, AAA domain.
Length = 256
Score = 30.1 bits (67), Expect = 2.1
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 315 ITVLLGHNGAGKSTTMSMLTGYKR 338
+ V++G NG+GKS + L
Sbjct: 1 LNVIIGPNGSGKSNLLKALALLLL 24
Score = 29.7 bits (66), Expect = 2.7
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 377 ITVLLGHNGAGKSTTMSMLTGLI 399
+ V++G NG+GKS + L L+
Sbjct: 1 LNVIIGPNGSGKSNLLKALALLL 23
>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain. Proteins
with a small GTP-binding domain recognized by this model
include Ras, RhoA, Rab11, translation elongation factor
G, translation initiation factor IF-2, tetratcycline
resistance protein TetM, CDC42, Era, ADP-ribosylation
factors, tdhF, and many others. In some proteins the
domain occurs more than once.This model recognizes a
large number of small GTP-binding proteins and related
domains in larger proteins. Note that the alpha chains
of heterotrimeric G proteins are larger proteins in
which the NKXD motif is separated from the GxxxxGK[ST]
motif (P-loop) by a long insert and are not easily
detected by this model [Unknown function, General].
Length = 162
Score = 29.6 bits (67), Expect = 2.2
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 317 VLLGHNGAGKSTTMSMLTGYKR 338
V++G GKST ++ L G K
Sbjct: 5 VIVGDPNVGKSTLLNRLLGNKI 26
>gnl|CDD|183704 PRK12726, PRK12726, flagellar biosynthesis regulator FlhF;
Provisional.
Length = 407
Score = 30.5 bits (68), Expect = 2.4
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 296 YKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSML 333
Y +GK AV++ + D+ ++I L+G G GK+TT+ L
Sbjct: 190 YLSGKLAVED-SFDLSNHRIISLIGQTGVGKTTTLVKL 226
Score = 30.5 bits (68), Expect = 2.4
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 358 YKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSML 395
Y +GK AV++ + D+ ++I L+G G GK+TT+ L
Sbjct: 190 YLSGKLAVED-SFDLSNHRIISLIGQTGVGKTTTLVKL 226
>gnl|CDD|233973 TIGR02680, TIGR02680, TIGR02680 family protein. Members of this
protein family belong to a conserved gene four-gene
neighborhood found sporadically in a phylogenetically
broad range of bacteria: Nocardia farcinica,
Symbiobacterium thermophilum, and Streptomyces
avermitilis (Actinobacteria), Geobacillus kaustophilus
(Firmicutes), Azoarcus sp. EbN1 and Ralstonia
solanacearum (Betaproteobacteria). Proteins in this
family average over 1400 amino acids in length
[Hypothetical proteins, Conserved].
Length = 1353
Score = 30.2 bits (68), Expect = 3.1
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 318 LLGHNGAGKSTTMSML 333
L G+NGAGKS + +L
Sbjct: 29 LRGNNGAGKSKVLELL 44
Score = 30.2 bits (68), Expect = 3.1
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 380 LLGHNGAGKSTTMSML 395
L G+NGAGKS + +L
Sbjct: 29 LRGNNGAGKSKVLELL 44
>gnl|CDD|221106 pfam11398, DUF2813, Protein of unknown function (DUF2813). This
entry contains YjbD from Escherichia coli, which is
annotated as a nucleotide triphosphate hydrolase.
Length = 373
Score = 29.9 bits (68), Expect = 3.2
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
Query: 368 LTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAY 407
L+LD ++TVL+G N GKS+ + L+ LI+ Y
Sbjct: 19 LSLD----ELTVLIGENAWGKSSLLDALS-LILNPDNELY 53
>gnl|CDD|225953 COG3419, PilY1, Tfp pilus assembly protein, tip-associated adhesin
PilY1 [Cell motility and secretion / Intracellular
trafficking and secretion].
Length = 1036
Score = 30.2 bits (68), Expect = 3.2
Identities = 23/108 (21%), Positives = 33/108 (30%), Gaps = 8/108 (7%)
Query: 311 YQNQITVLLGHNGAGKSTTMSMLT----GYKRKSKDIVNASGIQLRGLTKIYKTGKKAVD 366
YQ + V + + A +T T GYK K S + K +T K V
Sbjct: 40 YQPNVLVGVCDSAAWNATNSFCYTYNVGGYKPVGKIQGYESRARFGAFGKSLRTRAKFVG 99
Query: 367 NLTLDMYQNQITVLLGH----NGAGKSTTMSMLTGLIIPTSGTAYIDG 410
L + + G T+ G+ SG DG
Sbjct: 100 TAALLPEYGKGSNSGAEWKPPTGVDYGNTLPSGNGISNFLSGVNTFDG 147
>gnl|CDD|213250 cd03283, ABC_MutS-like, ATP-binding cassette domain of MutS-like
homolog. The MutS protein initiates DNA mismatch repair
by recognizing mispaired and unpaired bases embedded in
duplex DNA and activating endo- and exonucleases to
remove the mismatch. Members of the MutS family possess
C-terminal domain with a conserved ATPase activity that
belongs to the ATP binding cassette (ABC) superfamily.
MutS homologs (MSH) have been identified in most
prokaryotic and all eukaryotic organisms examined.
Prokaryotes have two homologs (MutS1 and MutS2), whereas
seven MSH proteins (MSH1 to MSH7) have been identified
in eukaryotes. The homodimer MutS1 and heterodimers
MSH2-MSH3 and MSH2-MSH6 are primarily involved in
mitotic mismatch repair, whereas MSH4-MSH5 is involved
in resolution of Holliday junctions during meiosis. All
members of the MutS family contain the highly conserved
Walker A/B ATPase domain, and many share a common
mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and
MSH4-MSH5 dimerize to form sliding clamps, and
recognition of specific DNA structures or lesions
results in ADP/ATP exchange.
Length = 199
Score = 29.2 bits (66), Expect = 3.4
Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 300 KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSML 333
+K V N +DM + ++ G N +GKST + +
Sbjct: 13 EKRVAN-DIDMEKKNGILITGSNMSGKSTFLRTI 45
Score = 29.2 bits (66), Expect = 3.4
Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 362 KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSML 395
+K V N +DM + ++ G N +GKST + +
Sbjct: 13 EKRVAN-DIDMEKKNGILITGSNMSGKSTFLRTI 45
>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein;
Provisional.
Length = 352
Score = 29.8 bits (68), Expect = 3.4
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 377 ITVLLGHNGAGKSTTMSMLTGLIIPTSG 404
IT + G +GAGK++ ++ ++GL P G
Sbjct: 26 ITAIFGRSGAGKTSLINAISGLTRPQKG 53
>gnl|CDD|221952 pfam13166, AAA_13, AAA domain. This family of domains contain a
P-loop motif that is characteristic of the AAA
superfamily. Many of the proteins in this family are
conjugative transfer proteins. This family includes the
PrrC protein that is thought to be the active component
of the anticodon nuclease.
Length = 713
Score = 30.0 bits (68), Expect = 3.8
Identities = 9/39 (23%), Positives = 18/39 (46%)
Query: 376 QITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIW 414
++ ++ G NG+GK+T + L + Y + W
Sbjct: 17 KVNLIYGRNGSGKTTLSRLFRSLELGRIHEKYSNCSFEW 55
>gnl|CDD|222878 PHA02562, 46, endonuclease subunit; Provisional.
Length = 562
Score = 29.6 bits (67), Expect = 3.8
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 307 TLDMYQNQITVLLGHNGAGKSTTMSMLT 334
+ + + + T++ G NGAGKST + LT
Sbjct: 21 EIQLDKVKKTLITGKNGAGKSTMLEALT 48
Score = 29.6 bits (67), Expect = 3.8
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 369 TLDMYQNQITVLLGHNGAGKSTTMSMLT 396
+ + + + T++ G NGAGKST + LT
Sbjct: 21 EIQLDKVKKTLITGKNGAGKSTMLEALT 48
>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 276
Score = 29.3 bits (65), Expect = 4.0
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 361 GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAY 407
GK +D +++ +T L+G G+GK+T + L + SG Y
Sbjct: 33 GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRY 79
>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional.
Length = 895
Score = 29.5 bits (66), Expect = 4.3
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 17/62 (27%)
Query: 315 ITVLLGHNGAGKSTTMSMLTGYKRKSKDIVNASGIQLRGLTKIYKTG---KKAVDNLTLD 371
I ++ G NGAGKS+ IV+A L + K KK +NL ++
Sbjct: 25 INIITGKNGAGKSS--------------IVDAIRFALFTDKRTEKIEDMIKKGKNNLEVE 70
Query: 372 MY 373
+
Sbjct: 71 LE 72
>gnl|CDD|236686 PRK10416, PRK10416, signal recognition particle-docking protein
FtsY; Provisional.
Length = 318
Score = 29.3 bits (67), Expect = 4.3
Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 10/60 (16%)
Query: 337 KRKSKDIVNASGIQ--LRG-LTKIYKTGKKAVDNLTLDMYQNQITVLL--GHNGAGKSTT 391
+ K K++ + ++ L+ L +I + +K L++ + + V+L G NG GK+TT
Sbjct: 76 RVKRKNLKDPEELKELLKEELAEILEPVEK-----PLNIEEKKPFVILVVGVNGVGKTTT 130
>gnl|CDD|226459 COG3950, COG3950, Predicted ATP-binding protein involved in
virulence [General function prediction only].
Length = 440
Score = 29.5 bits (66), Expect = 4.4
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 292 LTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTM 330
L KI + NL + +++ T+++G NG+GK+T +
Sbjct: 3 LRKISLNNFRCFLNLDITFGESETTIIVGPNGSGKTTVL 41
Score = 29.5 bits (66), Expect = 4.4
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 354 LTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTM 392
L KI + NL + +++ T+++G NG+GK+T +
Sbjct: 3 LRKISLNNFRCFLNLDITFGESETTIIVGPNGSGKTTVL 41
>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein
YejF; Provisional.
Length = 529
Score = 29.3 bits (66), Expect = 4.7
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 352 RGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGH 411
+G+ K V N++ + + L+G +G+GKSTT L L I + G + DG
Sbjct: 289 KGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRL-INSQGEIWFDGQ 347
Score = 28.9 bits (65), Expect = 7.4
Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 4/50 (8%)
Query: 365 VDNLTLDMYQNQITVLLGHNGAGKS-TTMSMLTGLIIPTSGTAYIDGHDI 413
V++++L + + L+G +G+GKS T +S+L ++P+ Y G DI
Sbjct: 25 VNDVSLQIEAGETLALVGESGSGKSVTALSILR--LLPSPPVVYPSG-DI 71
>gnl|CDD|223637 COG0563, Adk, Adenylate kinase and related kinases [Nucleotide
transport and metabolism].
Length = 178
Score = 28.8 bits (65), Expect = 4.9
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Query: 379 VLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLG 425
++LG GAGKST L + G ++D DI R LG
Sbjct: 4 LILGPPGAGKST----LAKKLAKKLGLPHLDTGDILRAAIAERTELG 46
>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter,
ATP-binding protein. Members of this family are the
ATP-binding protein of a conserved four gene ABC
transporter operon found next to ectoine unilization
operons and ectoine biosynthesis operons. Ectoine is a
compatible solute that protects enzymes from high
osmolarity. It is released by some species in response
to hypoosmotic shock, and it is taken up by a number of
bacteria as a compatible solute or for consumption. This
family shows strong sequence similiarity to a number of
amino acid ABC transporter ATP-binding proteins.
Length = 252
Score = 29.0 bits (65), Expect = 5.0
Identities = 24/109 (22%), Positives = 47/109 (43%), Gaps = 15/109 (13%)
Query: 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYI 408
++ +TK + +D L + + L+G +G+GKST + +L L G +
Sbjct: 1 VRFSDVTKRFGI-LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQV 59
Query: 409 DGHDIWYEMGK--------------VRESLGLCPQYDLLFEELTVEDHL 443
+G +++ G+ +R +G+ Q LF TV D++
Sbjct: 60 EGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNV 108
>gnl|CDD|223626 COG0552, FtsY, Signal recognition particle GTPase [Intracellular
trafficking and secretion].
Length = 340
Score = 29.1 bits (66), Expect = 5.1
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 292 LTKIYKTGKKAVDNLTLDMYQNQITVLL--GHNGAGKSTTMSMLTG-YKRKSKDIVNASG 348
L +I + K L + + + V+L G NG GK+TT++ L K++ K ++ A+G
Sbjct: 117 LIEILRPVDKVDLPLEIP-KEKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAG 175
>gnl|CDD|227581 COG5256, TEF1, Translation elongation factor EF-1alpha (GTPase)
[Translation, ribosomal structure and biogenesis].
Length = 428
Score = 29.2 bits (66), Expect = 5.4
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 3/28 (10%)
Query: 379 VLLGHNGAGKSTTMSML---TGLIIPTS 403
V +GH AGKST + L G I +
Sbjct: 11 VFIGHVDAGKSTLVGRLLYDLGEIDKRT 38
Score = 28.8 bits (65), Expect = 7.8
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 317 VLLGHNGAGKSTTMSML 333
V +GH AGKST + L
Sbjct: 11 VFIGHVDAGKSTLVGRL 27
>gnl|CDD|213243 cd03276, ABC_SMC6_euk, ATP-binding cassette domain of eukaryotic
SM6 proteins. The structural maintenance of chromosomes
(SMC) proteins are large (approximately 110 to 170 kDa),
and each is arranged into five recognizable domains.
Amino-acid sequence homology of SMC proteins between
species is largely confined to the amino- and
carboxy-terminal globular domains. The amino-terminal
domain contains a 'Walker A' nucleotide-binding domain
(GxxGxGKS/T, in the single-letter amino-acid code),
which by mutational studies has been shown to be
essential in several proteins. The carboxy-terminal
domain contains a sequence (the DA-box) that resembles a
'Walker B' motif, and a motif with homology to the
signature sequence of the ATP-binding cassette (ABC)
family of ATPases. The sequence homology within the
carboxy-terminal domain is relatively high within the
SMC1-SMC4 group, whereas SMC5 and SMC6 show some
divergence in both of these sequences. In eukaryotic
cells, the proteins are found as heterodimers of SMC1
paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6
(formerly known as Rad18).
Length = 198
Score = 28.3 bits (64), Expect = 6.2
Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
Query: 366 DNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLII 400
+L ++ + ++G+NG+GKS ++LT L I
Sbjct: 13 RHLQIEFGPR-VNFIVGNNGSGKS---AILTALTI 43
>gnl|CDD|238979 cd02021, GntK, Gluconate kinase (GntK) catalyzes the phosphoryl
transfer from ATP to gluconate. The resulting product
gluconate-6-phoshate is an important precursor of
gluconate metabolism. GntK acts as a dimmer composed of
two identical subunits.
Length = 150
Score = 28.0 bits (63), Expect = 7.1
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Query: 377 ITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDI 413
I V++G +G+GKST L G +IDG D+
Sbjct: 1 IIVVMGVSGSGKSTVGKAL----AERLGAPFIDGDDL 33
>gnl|CDD|213209 cd03242, ABC_RecF, ATP-binding cassette domain of RecF. RecF is a
recombinational DNA repair ATPase that maintains
replication in the presence of DNA damage. When
replication is prematurely disrupted by DNA damage,
several recF pathway gene products play critical roles
processing the arrested replication fork, allowing it to
resume and complete its task. This CD represents the
nucleotide binding domain of RecF. RecF belongs to a
large superfamily of ABC transporters involved in the
transport of a wide variety of different compounds
including sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases with a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 270
Score = 28.4 bits (64), Expect = 7.7
Identities = 9/24 (37%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 304 DNLTLDMYQNQITVLLGHNGAGKS 327
L L+ ++ +TVL+G N GK+
Sbjct: 13 AELELE-FEPGVTVLVGENAQGKT 35
Score = 28.4 bits (64), Expect = 7.7
Identities = 9/24 (37%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 366 DNLTLDMYQNQITVLLGHNGAGKS 389
L L+ ++ +TVL+G N GK+
Sbjct: 13 AELELE-FEPGVTVLVGENAQGKT 35
>gnl|CDD|234608 PRK00064, recF, recombination protein F; Reviewed.
Length = 361
Score = 28.6 bits (65), Expect = 8.0
Identities = 9/23 (39%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 304 DNLTLDMYQNQITVLLGHNGAGK 326
+ L L++ + VL+G NG GK
Sbjct: 15 EELDLEL-SPGVNVLVGENGQGK 36
Score = 28.6 bits (65), Expect = 8.0
Identities = 9/23 (39%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 366 DNLTLDMYQNQITVLLGHNGAGK 388
+ L L++ + VL+G NG GK
Sbjct: 15 EELDLEL-SPGVNVLVGENGQGK 36
>gnl|CDD|222249 pfam13593, DUF4137, SBF-like CPA transporter family (DUF4137).
These family members are membrane transporter proteins
of the CPA and AT superfamily.
Length = 313
Score = 28.3 bits (64), Expect = 8.1
Identities = 21/73 (28%), Positives = 28/73 (38%), Gaps = 5/73 (6%)
Query: 105 LLRNWTIAWSPYHPELFNVMSRASFV-IGYQLFDDDIAGREHLSRQVKSSCFLVVFSGST 163
LLR W H +L + R+S + I Y F A E + V S LV+F+
Sbjct: 176 LLRPLFPKWVARHKKLLKKVDRSSILLIVYTAFST--AFVEGIWHSVSHSILLVIFALGL 233
Query: 164 A--ATVGGLVWFG 174
V L F
Sbjct: 234 LLLFVVLVLTTFA 246
>gnl|CDD|224557 COG1643, HrpA, HrpA-like helicases [DNA replication, recombination,
and repair].
Length = 845
Score = 28.8 bits (65), Expect = 8.5
Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 13/74 (17%)
Query: 326 KSTTMSMLTGYKRKSKDIVNASGIQLRGLTKIYKTGKKAVDNLTLDMY---------QNQ 376
+ T + + K + V SG+ R + + L + QNQ
Sbjct: 11 REATDAAMQEMKNQ----VRGSGMDARSRSANVPDILEYRSGLPVTAVRDEILKAIEQNQ 66
Query: 377 ITVLLGHNGAGKST 390
+ +++G G+GK+T
Sbjct: 67 VVIIVGETGSGKTT 80
>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional.
Length = 1560
Score = 28.6 bits (64), Expect = 8.9
Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 13/85 (15%)
Query: 362 KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVR 421
K + ++++ + + ++TV+LG G+GKST + L + G +W E
Sbjct: 673 KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEG-------RVWAE----- 720
Query: 422 ESLGLCPQYDLLFEELTVEDHLQFF 446
S+ PQ + TV ++ FF
Sbjct: 721 RSIAYVPQQAWIMNA-TVRGNILFF 744
>gnl|CDD|238260 cd00464, SK, Shikimate kinase (SK) is the fifth enzyme in the
shikimate pathway, a seven-step biosynthetic pathway
which converts erythrose-4-phosphate to chorismic acid,
found in bacteria, fungi and plants. Chorismic acid is a
important intermediate in the synthesis of aromatic
compounds, such as aromatic amino acids, p-aminobenzoic
acid, folate and ubiquinone. Shikimate kinase catalyses
the phosphorylation of the 3-hydroxyl group of shikimic
acid using ATP.
Length = 154
Score = 27.5 bits (62), Expect = 9.2
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 317 VLLGHNGAGKSTTMSML 333
VL+G GAGK+T +L
Sbjct: 3 VLIGMMGAGKTTVGRLL 19
Score = 27.5 bits (62), Expect = 9.2
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 379 VLLGHNGAGKSTTMSML 395
VL+G GAGK+T +L
Sbjct: 3 VLIGMMGAGKTTVGRLL 19
>gnl|CDD|235878 PRK06851, PRK06851, hypothetical protein; Provisional.
Length = 367
Score = 28.4 bits (64), Expect = 9.3
Identities = 18/59 (30%), Positives = 22/59 (37%), Gaps = 23/59 (38%)
Query: 375 NQITVLLGHNGAGKSTTMSM-----------------------LTGLIIPTSGTAYIDG 410
N+I +L G G GKST M L G+IIP A +DG
Sbjct: 30 NRIFILKGGPGTGKSTLMKKIGEEFLEKGYDVEFLHCSSDNDSLDGVIIPELKIAILDG 88
>gnl|CDD|177773 PLN00178, PLN00178, sulfite reductase.
Length = 623
Score = 28.6 bits (64), Expect = 9.4
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Query: 28 PGAMKDYIAGVVFDDDIAGLIIPTSGTAYIDGHDIW 63
P A KDY+ +IA L+ P SG Y DIW
Sbjct: 190 PFARKDYLFAQELAKNIAALLAPQSGAYY----DIW 221
>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter
subunit; Provisional.
Length = 257
Score = 28.0 bits (62), Expect = 9.5
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 380 LLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDI 413
++G +G+GKST + + L P+ G+ ++G I
Sbjct: 36 IIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTI 69
>gnl|CDD|237701 PRK14398, PRK14398, membrane protein; Provisional.
Length = 191
Score = 27.9 bits (62), Expect = 9.7
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 10/59 (16%)
Query: 351 LRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGH---------NGAGKSTTMSMLTGLII 400
L+G +Y ++ DN +Y + I +LGH G G +TT+ +L L I
Sbjct: 61 LKGFIAVY-IAQQFCDNNDFYIYVSAILAVLGHMFPIWLKFSGGKGVATTLGILIALNI 118
>gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed.
Length = 248
Score = 28.2 bits (63), Expect = 9.8
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 299 GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
K + L L++ ++ ++G NG+GKST + L G
Sbjct: 13 DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAG 49
Score = 28.2 bits (63), Expect = 9.8
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 361 GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 397
K + L L++ ++ ++G NG+GKST + L G
Sbjct: 13 DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAG 49
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.137 0.424
Gapped
Lambda K H
0.267 0.0534 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 24,534,927
Number of extensions: 2418671
Number of successful extensions: 3732
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3651
Number of HSP's successfully gapped: 814
Length of query: 474
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 374
Effective length of database: 6,502,202
Effective search space: 2431823548
Effective search space used: 2431823548
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (27.7 bits)