RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7411
(474 letters)
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint
center for structural genomics, JCSG, protein structu
initiative, PSI; 2.10A {Thermotoga maritima} SCOP:
c.37.1.12
Length = 256
Score = 129 bits (326), Expect = 1e-34
Identities = 26/100 (26%), Positives = 56/100 (56%), Gaps = 1/100 (1%)
Query: 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYI 408
+ ++ L K K+ + ++ ++ + +I L+G NGAGK+TT+ +++ LI P+SG +
Sbjct: 16 VVVKDLRKRIG-KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTV 74
Query: 409 DGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAK 448
G ++ E +VR+ + P+ + + ++L+F A
Sbjct: 75 FGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAG 114
Score = 67.6 bits (166), Expect = 6e-13
Identities = 14/54 (25%), Positives = 28/54 (51%)
Query: 44 IAGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAK 97
I+ LI P+SG + G ++ E +VR+ + P+ + + ++L+F A
Sbjct: 61 ISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAG 114
Score = 64.9 bits (159), Expect = 6e-12
Identities = 13/45 (28%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 292 LTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGY 336
L K K+ + ++ ++ + +I L+G NGAGK+TT+ +++
Sbjct: 21 LRKRIG-KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTL 64
>1sgw_A Putative ABC transporter; structural genomics, P protein structure
initiative, southeast collaboratory for S genomics,
secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Length = 214
Score = 127 bits (322), Expect = 1e-34
Identities = 24/104 (23%), Positives = 52/104 (50%), Gaps = 6/104 (5%)
Query: 345 NASGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSG 404
+ S +++R L+ Y K ++ +T+ + + + G NG GK+T + ++ + P G
Sbjct: 7 HGSKLEIRDLSVGY--DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKG 64
Query: 405 TAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAK 448
+G I KV+ + P+ ++ +++VED+L+ A
Sbjct: 65 EIIYNGVPIT----KVKGKIFFLPEEIIVPRKISVEDYLKAVAS 104
Score = 70.2 bits (173), Expect = 4e-14
Identities = 11/45 (24%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 292 LTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGY 336
L+ Y K ++ +T+ + + + G NG GK+T + ++ Y
Sbjct: 16 LSVGY--DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTY 58
Score = 62.5 bits (153), Expect = 2e-11
Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 44 IAGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAK 97
I+ + P G +G I KV+ + P+ ++ +++VED+L+ A
Sbjct: 55 ISTYLKPLKGEIIYNGVPIT----KVKGKIFFLPEEIIVPRKISVEDYLKAVAS 104
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell
membrane, cobalt transport, hydrolase, ION transport;
2.30A {Clostridium perfringens atcc 13124}
Length = 275
Score = 89.9 bits (224), Expect = 2e-20
Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 6/98 (6%)
Query: 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYI 408
+++ L Y G A+ + +++ + ++T +LG NG GKST G++ P+SG
Sbjct: 8 LKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILF 67
Query: 409 DGHDIWYE---MGKVRESLGLCPQY--DLLFEELTVED 441
D I Y + K+RES+G+ Q + LF +V
Sbjct: 68 DNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSA-SVYQ 104
Score = 52.2 bits (126), Expect = 1e-07
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 292 LTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
L Y G A+ + +++ + ++T +LG NG GKST G
Sbjct: 13 LNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNG 56
Score = 39.1 bits (92), Expect = 0.002
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 46 GLIIPTSGTAYIDGHDIWYE---MGKVRESLGLCPQY--DLLFEELTVED 90
G++ P+SG D I Y + K+RES+G+ Q + LF +V
Sbjct: 56 GILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSA-SVYQ 104
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural
genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Length = 263
Score = 83.9 bits (208), Expect = 2e-18
Identities = 25/106 (23%), Positives = 54/106 (50%), Gaps = 10/106 (9%)
Query: 349 IQLRGLTKIYKTG---KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGT 405
IQL+ + + +++N+ L++ + ++LG NG+GK+T + ++GL +P SG
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEV-NGEKVIILGPNGSGKTTLLRAISGL-LPYSGN 59
Query: 406 AYIDGHDIWYEMGKVRESLGLCPQY-DLLFEELTVEDHLQFFAKGK 450
+I+G ++ K+R + + +TV D + + + K
Sbjct: 60 IFINGMEVR----KIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELK 101
Score = 50.4 bits (121), Expect = 3e-07
Identities = 10/47 (21%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 292 LTKIYKTG---KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
+ + +++N+ L++ + ++LG NG+GK+T + ++G
Sbjct: 7 VGITLSGKGYERFSLENINLEV-NGEKVIILGPNGSGKTTLLRAISG 52
Score = 38.1 bits (89), Expect = 0.004
Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
Query: 44 IAGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQY-DLLFEELTVEDHLQFFAK 97
I+GL+ P SG +I+G ++ K+R + + +TV D + + +
Sbjct: 50 ISGLL-PYSGNIFINGMEVR----KIRNYIRYSTNLPEAYEIGVTVNDIVYLYEE 99
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt
transport, TM02 hydrolase, inner membrane, membrane,
nucleotide-binding; 2.30A {Thermotoga maritima}
Length = 266
Score = 83.4 bits (207), Expect = 3e-18
Identities = 32/99 (32%), Positives = 57/99 (57%), Gaps = 9/99 (9%)
Query: 349 IQLRGLTKIYKTG----KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSG 404
I++ ++ I+ G KKA++N++L + + + ++ G+ G+GKST + ++ GLI PTSG
Sbjct: 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG 62
Query: 405 TAYIDGHDIWYEMGKVRESLGLCPQY--DLLFEELTVED 441
DG + ++R ++G+ QY D F E V D
Sbjct: 63 DVLYDGERK--KGYEIRRNIGIAFQYPEDQFFAE-RVFD 98
Score = 48.4 bits (116), Expect = 2e-06
Identities = 14/48 (29%), Positives = 31/48 (64%), Gaps = 4/48 (8%)
Query: 292 LTKIYKTG----KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
++ I+ G KKA++N++L + + + ++ G+ G+GKST + ++ G
Sbjct: 8 VSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAG 55
Score = 36.4 bits (85), Expect = 0.014
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Query: 44 IAGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQY--DLLFEELTVED 90
+AGLI PTSG DG + ++R ++G+ QY D F E V D
Sbjct: 53 VAGLIEPTSGDVLYDGERK--KGYEIRRNIGIAFQYPEDQFFAE-RVFD 98
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette,
hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Length = 279
Score = 82.6 bits (205), Expect = 6e-18
Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 6/98 (6%)
Query: 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYI 408
IQL + ++ GK + ++ + + +L G NGAGK+T +++L TSGT +
Sbjct: 22 IQLDQIGRMK-QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNL 80
Query: 409 DGHDI---WYEMGKVRESLGLCPQ--YDLLFEELTVED 441
G Y VR+ +G + E V D
Sbjct: 81 FGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVID 118
Score = 54.9 bits (133), Expect = 2e-08
Identities = 12/49 (24%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 292 LTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKS 340
+ ++ GK + ++ + + +L G NGAGK+T +++L Y+ +
Sbjct: 27 IGRMK-QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT 74
Score = 32.6 bits (75), Expect = 0.23
Identities = 12/52 (23%), Positives = 17/52 (32%), Gaps = 5/52 (9%)
Query: 44 IAGLIIPTSGTAYIDGHDI---WYEMGKVRESLGLCPQ--YDLLFEELTVED 90
+ TSGT + G Y VR+ +G + E V D
Sbjct: 67 LNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVID 118
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga
maritima} SCOP: c.37.1.12
Length = 240
Score = 73.3 bits (181), Expect = 5e-15
Identities = 32/100 (32%), Positives = 52/100 (52%), Gaps = 9/100 (9%)
Query: 350 QLRGLTKIYKTGK-KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYI 408
+++ L Y G A+ + L + + QI L+G NGAGK+TT+S + GL+ G
Sbjct: 8 EVQSLHVYY--GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIF 65
Query: 409 DGHDIW----YEMGKVRESLGLCPQYDLLFEELTVEDHLQ 444
+G DI + + R + L P+ +F ELTV ++L
Sbjct: 66 NGQDITNKPAHVI--NRMGIALVPEGRRIFPELTVYENLM 103
Score = 43.6 bits (104), Expect = 6e-05
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 301 KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
A+ + L + + QI L+G NGAGK+TT+S + G
Sbjct: 20 HAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAG 54
Score = 38.2 bits (90), Expect = 0.003
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Query: 44 IAGLIIPTSGTAYIDGHDIW----YEMGKVRESLGLCPQYDLLFEELTVEDHLQ 93
IAGL+ G +G DI + + R + L P+ +F ELTV ++L
Sbjct: 52 IAGLVRAQKGKIIFNGQDITNKPAHVI--NRMGIALVPEGRRIFPELTVYENLM 103
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein;
ATP-binding, nucleotide-binding, membrane,
transmembrane, transport protein; 3.00A {Methanosarcina
acetivorans} SCOP: b.40.6.3 c.37.1.12
Length = 348
Score = 74.5 bits (184), Expect = 9e-15
Identities = 20/65 (30%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYI 408
I++ L++ + ++DNL+L + + V+LG GAGK+ + ++ G +P SG +
Sbjct: 2 IEIESLSRKW--KNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILL 59
Query: 409 DGHDI 413
DG D+
Sbjct: 60 DGKDV 64
Score = 46.4 bits (111), Expect = 1e-05
Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 292 LTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
L++ + ++DNL+L + + V+LG GAGK+ + ++ G
Sbjct: 7 LSRKW--KNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAG 48
Score = 33.3 bits (77), Expect = 0.17
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 44 IAGLIIPTSGTAYIDGHDI 62
IAG +P SG +DG D+
Sbjct: 46 IAGFHVPDSGRILLDGKDV 64
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding
domain, ABC motor domain, ferric iron transport, cell
inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Length = 359
Score = 71.1 bits (175), Expect = 1e-13
Identities = 24/98 (24%), Positives = 47/98 (47%), Gaps = 4/98 (4%)
Query: 347 SGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTA 406
+ + + L+K ++ +++++L + +I ++G +G GK+T + L G P SG
Sbjct: 3 AALHIGHLSKSFQ-NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEI 61
Query: 407 YIDGHDIWYEMGKV---RESLGLCPQYDLLFEELTVED 441
+ G I+ + + LG Q +LF LTV
Sbjct: 62 SLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYR 99
Score = 43.3 bits (103), Expect = 1e-04
Identities = 11/44 (25%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 292 LTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
L+K ++ +++++L + +I ++G +G GK+T + L G
Sbjct: 10 LSKSFQ-NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAG 52
Score = 32.5 bits (75), Expect = 0.29
Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Query: 44 IAGLIIPTSGTAYIDGHDIWYEMGKV---RESLGLCPQYDLLFEELTVED 90
+AG P SG + G I+ + + LG Q +LF LTV
Sbjct: 50 LAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYR 99
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta
motif, beta sandwich, ligand binding protein; 1.90A
{Alicyclobacillus acidocaldarius}
Length = 355
Score = 70.7 bits (174), Expect = 1e-13
Identities = 21/65 (32%), Positives = 39/65 (60%)
Query: 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYI 408
I+ G+ KIY G ++V ++ + + ++ LLG +G+GK+T + ++ GL PT G +I
Sbjct: 15 IEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWI 74
Query: 409 DGHDI 413
G +
Sbjct: 75 GGKRV 79
Score = 43.8 bits (104), Expect = 8e-05
Identities = 13/44 (29%), Positives = 28/44 (63%)
Query: 292 LTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
+ KIY G ++V ++ + + ++ LLG +G+GK+T + ++ G
Sbjct: 20 VEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAG 63
Score = 31.8 bits (73), Expect = 0.41
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 44 IAGLIIPTSGTAYIDGHDI 62
IAGL PT G +I G +
Sbjct: 61 IAGLERPTKGDVWIGGKRV 79
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane,
membrane, transmembrane, transport, ATP- binding,
hydrolase, nucleotide-binding, periplasm; HET: 1PE;
2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Length = 249
Score = 68.7 bits (169), Expect = 2e-13
Identities = 19/94 (20%), Positives = 36/94 (38%), Gaps = 7/94 (7%)
Query: 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYI 408
+QL+ + + L+ ++ +I L+G NGAGKST ++ + G+ G+
Sbjct: 5 MQLQDVA-----ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM-TSGKGSIQF 58
Query: 409 DGHDIW-YEMGKVRESLGLCPQYDLLFEELTVED 441
G + + K+ Q V
Sbjct: 59 AGQPLEAWSATKLALHRAYLSQQQTPPFATPVWH 92
Score = 47.6 bits (114), Expect = 3e-06
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 299 GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
+ L+ ++ +I L+G NGAGKST ++ + G
Sbjct: 12 ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG 48
Score = 28.7 bits (65), Expect = 3.6
Identities = 7/48 (14%), Positives = 13/48 (27%), Gaps = 2/48 (4%)
Query: 44 IAGLIIPTSGTAYIDGHDIW-YEMGKVRESLGLCPQYDLLFEELTVED 90
+AG+ G+ G + + K+ Q V
Sbjct: 46 MAGMT-SGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWH 92
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding
protein; beta-core domain; HET: ADP; 1.60A
{Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB:
1gaj_A 1g9x_A*
Length = 257
Score = 68.3 bits (168), Expect = 4e-13
Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 17/87 (19%)
Query: 327 STTMSMLTGYKRKSKDIVNASGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGA 386
TM +L + + K + KA+D +++ + + +T+++G NG+
Sbjct: 2 RDTMEIL----------------RTENIVKYFG-EFKALDGVSISVNKGDVTLIIGPNGS 44
Query: 387 GKSTTMSMLTGLIIPTSGTAYIDGHDI 413
GKST ++++TG + G Y + DI
Sbjct: 45 GKSTLINVITGFLKADEGRVYFENKDI 71
Score = 48.7 bits (117), Expect = 1e-06
Identities = 14/40 (35%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Query: 299 GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG-YK 337
KA+D +++ + + +T+++G NG+GKST ++++TG K
Sbjct: 19 EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK 58
Score = 27.5 bits (62), Expect = 9.8
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 44 IAGLIIPTSGTAYIDGHDI 62
I G + G Y + DI
Sbjct: 53 ITGFLKADEGRVYFENKDI 71
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I
ABC type importer, methionine uptake transporter,
membrane protein; HET: ADP; 2.90A {Escherichia coli}
PDB: 3tuj_C 3tuz_C* 3dhw_C
Length = 366
Score = 68.9 bits (169), Expect = 7e-13
Identities = 31/100 (31%), Positives = 54/100 (54%), Gaps = 7/100 (7%)
Query: 349 IQLRGLTKIYKTGKK---AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGT 405
I+L +TK++ G + A++N++L + QI ++G +GAGKST + + L PT G+
Sbjct: 25 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 84
Query: 406 AYIDGHDIWY----EMGKVRESLGLCPQYDLLFEELTVED 441
+DG ++ E+ K R +G+ Q+ L TV
Sbjct: 85 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFG 124
Score = 44.6 bits (106), Expect = 5e-05
Identities = 18/72 (25%), Positives = 38/72 (52%), Gaps = 11/72 (15%)
Query: 292 LTKIYKTGKK---AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKS-------- 340
+TK++ G + A++N++L + QI ++G +GAGKST + + +R +
Sbjct: 30 ITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDG 89
Query: 341 KDIVNASGIQLR 352
+++ S +L
Sbjct: 90 QELTTLSESELT 101
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase,
ATP-binding cassette, ATPase, transport protein; 1.45A
{Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB:
1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Length = 353
Score = 67.7 bits (166), Expect = 1e-12
Identities = 22/68 (32%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 347 SGIQLRGLTKIYKTGK-KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGT 405
I ++ ++K++K GK A+DN+ +++ + +LG +GAGK+T M ++ GL +P++G
Sbjct: 2 VRIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61
Query: 406 AYIDGHDI 413
Y D +
Sbjct: 62 LYFDDRLV 69
Score = 45.3 bits (108), Expect = 2e-05
Identities = 16/45 (35%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 292 LTKIYKTGK-KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
++K++K GK A+DN+ +++ + +LG +GAGK+T M ++ G
Sbjct: 9 VSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAG 53
Score = 28.8 bits (65), Expect = 3.7
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 44 IAGLIIPTSGTAYIDGHDI 62
IAGL +P++G Y D +
Sbjct: 51 IAGLDVPSTGELYFDDRLV 69
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 68.1 bits (167), Expect = 2e-12
Identities = 23/113 (20%), Positives = 49/113 (43%), Gaps = 9/113 (7%)
Query: 339 KSKDIVNASGIQLRGLTKIYKT-GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 397
K + V+ L ++ K G ++ ++ + ++ ++G NG GK+T + ML G
Sbjct: 345 KLSERVDVERETLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAG 404
Query: 398 LIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQ---YDLLFEELTVEDHLQFFA 447
+ PT G D + Y + + + Y+LL + + + + F+
Sbjct: 405 VEEPTEGKVEWDLT-VAY----KPQYIKAEYEGTVYELLSKIDSSKLNSNFYK 452
Score = 52.7 bits (127), Expect = 2e-07
Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
Query: 296 YKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSKDIVNASGIQLRGLT 355
G ++ ++ + ++ ++G NG GK+T + ML G + + G LT
Sbjct: 365 KDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT------EGKVEWDLT 418
Query: 356 KIYK 359
YK
Sbjct: 419 VAYK 422
Score = 50.4 bits (121), Expect = 8e-07
Identities = 15/72 (20%), Positives = 25/72 (34%), Gaps = 1/72 (1%)
Query: 342 DIVNASGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIP 401
IVN Y V + + ++G NG GK+T + +L G +IP
Sbjct: 85 SIVNLPEQLDEDCVHRYG-VNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIP 143
Query: 402 TSGTAYIDGHDI 413
++
Sbjct: 144 NLCEDNDSWDNV 155
Score = 39.2 bits (92), Expect = 0.003
Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 292 LTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
Y V + + ++G NG GK+T + +L G
Sbjct: 97 CVHRYG-VNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAG 139
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 67.7 bits (166), Expect = 3e-12
Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 13/95 (13%)
Query: 350 QLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYID 409
+ + K + VDN + +I +LG NG GK+T +L G I G+ +
Sbjct: 271 KWTKIIKKLGDFQLVVDNGEA--KEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPE 328
Query: 410 GHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQ 444
+ Y+ PQ + TV+ +L+
Sbjct: 329 KQILSYK-----------PQRIFPNYDGTVQQYLE 352
Score = 47.7 bits (114), Expect = 6e-06
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 292 LTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
+ K + VDN + +I +LG NG GK+T +L G
Sbjct: 275 IIKKLGDFQLVVDNGEA--KEGEIIGILGPNGIGKTTFARILVG 316
Score = 47.3 bits (113), Expect = 7e-06
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Query: 357 IYKTGKKAVDNLTLDMYQ-NQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY 415
I++ L + N I +LG NG GK+T + +L G IIP G +
Sbjct: 6 IHRYKVNGFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGD--PNSKVGKD 63
Query: 416 E-MGKVRES 423
E + + R
Sbjct: 64 EVLKRFRGK 72
Score = 39.6 bits (93), Expect = 0.002
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
Query: 284 LEGEVGFCLTKIYKTGKKAVDNLTLDMYQ-NQITVLLGHNGAGKSTTMSMLTG 335
+EGEV I++ L + N I +LG NG GK+T + +L G
Sbjct: 1 MEGEV------IHRYKVNGFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAG 47
Score = 29.2 bits (66), Expect = 3.7
Identities = 9/50 (18%), Positives = 18/50 (36%), Gaps = 11/50 (22%)
Query: 44 IAGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQ 93
+ G I G+ + + Y+ PQ + TV+ +L+
Sbjct: 314 LVGEITADEGSVTPEKQILSYK-----------PQRIFPNYDGTVQQYLE 352
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein;
structural genomics; 1.70A {Aquifex aeolicus} PDB:
2pcl_A
Length = 224
Score = 62.5 bits (153), Expect = 2e-11
Identities = 14/65 (21%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYI 408
++ + K+ + + + ++L + + + ++G +G+GKST + +L L PT G ++
Sbjct: 5 LRAENIKKVIRGYE-ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFL 63
Query: 409 DGHDI 413
+G ++
Sbjct: 64 EGKEV 68
Score = 38.3 bits (90), Expect = 0.002
Identities = 9/42 (21%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 292 LTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSML 333
+ K+ + + + ++L + + + ++G +G+GKST + +L
Sbjct: 10 IKKVIRGYE-ILKGISLSVKKGEFVSIIGASGSGKSTLLYIL 50
>3tif_A Uncharacterized ABC transporter ATP-binding prote;
nucleotide-binding domain, ABC transporter ATPase; HET:
ADP; 1.80A {Methanocaldococcus jannaschii dsm
2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Length = 235
Score = 62.6 bits (153), Expect = 2e-11
Identities = 22/68 (32%), Positives = 41/68 (60%), Gaps = 3/68 (4%)
Query: 349 IQLRGLTKIYKTGK---KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGT 405
++L+ +TK YK G+ A+ N+ L++ + + ++G +G+GKST ++++ L PT G
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 406 AYIDGHDI 413
YID
Sbjct: 62 VYIDNIKT 69
Score = 38.7 bits (91), Expect = 0.002
Identities = 14/45 (31%), Positives = 30/45 (66%), Gaps = 3/45 (6%)
Query: 292 LTKIYKTGK---KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSML 333
+TK YK G+ A+ N+ L++ + + ++G +G+GKST ++++
Sbjct: 7 VTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNII 51
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 64.2 bits (157), Expect = 3e-11
Identities = 21/102 (20%), Positives = 43/102 (42%), Gaps = 10/102 (9%)
Query: 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYI 408
+ L K Y G ++ ++ + ++ ++G NG GK+T + ML G+ PT G
Sbjct: 288 VTYPRLVKDY--GSFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW 345
Query: 409 DGHDIWYEMGKVRESLGLCPQ---YDLLFEELTVEDHLQFFA 447
D + + + + Y+LL + + + F+
Sbjct: 346 DL-----TVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYK 382
Score = 50.0 bits (120), Expect = 1e-06
Identities = 18/77 (23%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
Query: 284 LEGEVGFCLTKIYKT-GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSKD 342
+E E ++ K G ++ ++ + ++ ++G NG GK+T + ML G + +
Sbjct: 282 IERETLVTYPRLVKDYGSFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPT-- 339
Query: 343 IVNASGIQLRGLTKIYK 359
G LT YK
Sbjct: 340 ----EGKIEWDLTVAYK 352
Score = 41.1 bits (97), Expect = 6e-04
Identities = 14/70 (20%), Positives = 28/70 (40%), Gaps = 3/70 (4%)
Query: 347 SGIQLRGLTK--IYKTGK-KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTS 403
+ L + +++ G V + + + ++G NG GKST + +L G +IP
Sbjct: 16 PRSHMEQLEEDCVHRYGVNAFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNL 75
Query: 404 GTAYIDGHDI 413
+
Sbjct: 76 CGDNDSWDGV 85
Score = 33.4 bits (77), Expect = 0.17
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 300 KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
V + + + ++G NG GKST + +L G
Sbjct: 34 NAFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAG 69
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 61.6 bits (150), Expect = 2e-10
Identities = 15/86 (17%), Positives = 34/86 (39%), Gaps = 8/86 (9%)
Query: 358 YKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEM 417
G ++ + ++I V++G NG GK+T + +L G + P G ++
Sbjct: 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKL-NVSM-- 417
Query: 418 GKVRESLGLCPQ---YDLLFEELTVE 440
+ + L F+++ +
Sbjct: 418 --KPQKIAPKFPGTVRQLFFKKIRGQ 441
Score = 50.8 bits (122), Expect = 7e-07
Identities = 25/118 (21%), Positives = 41/118 (34%), Gaps = 16/118 (13%)
Query: 342 DIVNASGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIP 401
I+N +T Y + L Q+ L+G NG GKST + +L G P
Sbjct: 71 QIINLPTNLEAHVTHRYSANSFKLHRL-PTPRPGQVLGLVGTNGIGKSTALKILAGKQKP 129
Query: 402 TSG-----------TAYIDGHDIW-YEMGKVRESLG--LCPQYDLLFEELTVEDHLQF 445
G Y G ++ Y + + + + PQY ++ +Q
Sbjct: 130 NLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPR-AIKGPVQK 186
Score = 50.8 bits (122), Expect = 7e-07
Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 6/64 (9%)
Query: 296 YKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSKDIVNASGIQLRGLT 355
G ++ + ++I V++G NG GK+T + +L G + G + L
Sbjct: 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD------EGQDIPKLN 414
Query: 356 KIYK 359
K
Sbjct: 415 VSMK 418
Score = 36.2 bits (84), Expect = 0.022
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 296 YKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGY 336
Y + L Q+ L+G NG GKST + +L G
Sbjct: 87 YSANSFKLHRL-PTPRPGQVLGLVGTNGIGKSTALKILAGK 126
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative
iron chelatin ABC transporter, nucleotide binding
domain; 2.40A {Haemophilus influenzae}
Length = 253
Score = 59.5 bits (145), Expect = 3e-10
Identities = 26/110 (23%), Positives = 40/110 (36%), Gaps = 20/110 (18%)
Query: 347 SGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTA 406
+ + L Y+ L D+ + I +LG NG GKST + +L G+ P G
Sbjct: 3 KALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI 62
Query: 407 YIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVED--------HLQFFAK 448
+ +G PQ+ +V D H+ FAK
Sbjct: 63 EVYQS------------IGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAK 100
Score = 41.8 bits (99), Expect = 2e-04
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 296 YKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
Y+ L D+ + I +LG NG GKST + +L G
Sbjct: 14 YQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLG 53
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding
protein; structural genomics, NPPSFA; 1.94A {Pyrococcus
horikoshii}
Length = 362
Score = 60.7 bits (148), Expect = 3e-10
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 347 SGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTA 406
I+L + K + A++N+ L + + LLG +G+GKST + + G+ PTSG
Sbjct: 2 VEIKLENIVKKFG-NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKI 60
Query: 407 YIDGHDI 413
Y D D+
Sbjct: 61 YFDEKDV 67
Score = 39.9 bits (94), Expect = 0.001
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 292 LTKIYKT--GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
L I K A++N+ L + + LLG +G+GKST + + G
Sbjct: 6 LENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAG 51
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active
transport, sugar uptake and regulation, transport
protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3
b.40.6.3 c.37.1.12 PDB: 1vci_A*
Length = 372
Score = 59.2 bits (144), Expect = 9e-10
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 347 SGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTA 406
++L LTK + AV+ L L + + VLLG +G GK+TT+ M+ GL PT G
Sbjct: 10 VEVKLENLTKRFG-NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRI 68
Query: 407 YIDGHDI 413
Y D+
Sbjct: 69 YFGDRDV 75
Score = 39.5 bits (93), Expect = 0.002
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 292 LTKIYKT--GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
L + K AV+ L L + + VLLG +G GK+TT+ M+ G
Sbjct: 14 LENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAG 59
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport,
maltose uptake and regulation, sugar binding protein;
1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3
c.37.1.12 PDB: 2d62_A
Length = 372
Score = 58.8 bits (143), Expect = 1e-09
Identities = 21/67 (31%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 347 SGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTA 406
+G++L + K++ AV ++L++ + +LLG +G GK+TT+ M+ GL P+ G
Sbjct: 2 AGVRLVDVWKVFG-EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI 60
Query: 407 YIDGHDI 413
YI +
Sbjct: 61 YIGDKLV 67
Score = 39.1 bits (92), Expect = 0.002
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 292 LTKIYKT--GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
L ++K AV ++L++ + +LLG +G GK+TT+ M+ G
Sbjct: 6 LVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAG 51
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB;
ABC-transporter, transport protein; HET: ADP; 1.60A
{Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A*
2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Length = 247
Score = 57.1 bits (139), Expect = 2e-09
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 15/113 (13%)
Query: 349 IQLRGLTKIYKTGKKAV-DNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAY 407
I R + YK + DN+ L + Q ++ ++G +G+GKST ++ IP +G
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 408 IDGHDI-WYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGR 459
IDGHD+ + +R +G+ Q ++L ++ D N I+
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQDNVLLNR-SIID-----------N-ISLAN 107
Score = 31.3 bits (72), Expect = 0.47
Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 284 LEGEVGFC-LTKIYKTGKKAV-DNLTLDMYQNQITVLLGHNGAGKSTTMSML 333
++ F + YK + DN+ L + Q ++ ++G +G+GKST ++
Sbjct: 4 HHHDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI 55
Score = 31.3 bits (72), Expect = 0.55
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 44 IAGLI----IPTSGTAYIDGHDI-WYEMGKVRESLGLCPQYDLLF 83
+ LI IP +G IDGHD+ + +R +G+ Q ++L
Sbjct: 51 LTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLL 95
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease
protein; asymmetric dimer, tetramer, P-glycoprotein;
HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Length = 243
Score = 56.3 bits (137), Expect = 3e-09
Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 1/87 (1%)
Query: 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYI 408
+ R + Y ++ + +++ + N I G +G GKST S+L PT+G I
Sbjct: 2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITI 61
Query: 409 DGHDIW-YEMGKVRESLGLCPQYDLLF 434
DG I + R +G Q +
Sbjct: 62 DGQPIDNISLENWRSQIGFVSQDSAIM 88
Score = 36.3 bits (85), Expect = 0.012
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 296 YKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSML 333
Y ++ + +++ + N I G +G GKST S+L
Sbjct: 11 YDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLL 48
Score = 30.5 bits (70), Expect = 0.84
Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 50 PTSGTAYIDGHDIW-YEMGKVRESLGLCPQYDLLF 83
PT+G IDG I + R +G Q +
Sbjct: 54 PTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIM 88
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha
and beta proteins (A/B) TM0421, structural genomics,
NPPSFA; 2.11A {Thermotoga maritima}
Length = 359
Score = 56.4 bits (137), Expect = 7e-09
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 347 SGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTA 406
I++ L K + KAVD ++ ++ + LLG +G GK+TT+ ML G+ PTSG
Sbjct: 2 PSIRVVNLKKYFG-KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEI 60
Query: 407 YIDGHDI 413
Y D +
Sbjct: 61 YFDDVLV 67
Score = 38.3 bits (90), Expect = 0.004
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 292 LTKIYKT--GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
+ + K KAVD ++ ++ + LLG +G GK+TT+ ML G
Sbjct: 6 VVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAG 51
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP;
2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Length = 271
Score = 54.8 bits (133), Expect = 1e-08
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Query: 349 IQLRGLTKIYKT--GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTA 406
++ + ++ Y + + LT +Y ++T L+G NG+GKST ++L L PT G
Sbjct: 17 VKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKV 76
Query: 407 YIDGHDI-WYEMGKVRESLGLCPQYDLLF 434
+DG + Y+ + + Q LLF
Sbjct: 77 LLDGEPLVQYDHHYLHTQVAAVGQEPLLF 105
Score = 34.8 bits (81), Expect = 0.040
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 301 KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSML 333
+ + LT +Y ++T L+G NG+GKST ++L
Sbjct: 33 QVLQGLTFTLYPGKVTALVGPNGSGKSTVAALL 65
Score = 30.2 bits (69), Expect = 1.4
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 50 PTSGTAYIDGHDI-WYEMGKVRESLGLCPQYDLLF 83
PT G +DG + Y+ + + Q LLF
Sbjct: 71 PTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLF 105
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter,
ABCB6, nucleotide binding domain, heme BIOS transport
protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A*
3nhb_A*
Length = 306
Score = 54.9 bits (133), Expect = 2e-08
Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 14/103 (13%)
Query: 358 YKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDI-WYE 416
Y G++ + +++ + Q L+G +GAGKST + +L +SG IDG DI
Sbjct: 63 YADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVT 122
Query: 417 MGKVRESLGLCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGR 459
+R +G+ PQ +LF + T+ D N I YGR
Sbjct: 123 QASLRSHIGVVPQDTVLFND-TIAD-----------N-IRYGR 152
Score = 33.0 bits (76), Expect = 0.19
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 296 YKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSML 333
Y G++ + +++ + Q L+G +GAGKST + +L
Sbjct: 63 YADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLL 100
Score = 32.6 bits (75), Expect = 0.26
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 50 PTSGTAYIDGHDI-WYEMGKVRESLGLCPQYDLLF 83
+SG IDG DI +R +G+ PQ +LF
Sbjct: 106 ISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLF 140
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; HET: ANP; 3.70A {Salmonella
typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A*
3b5z_A* 3b5w_A
Length = 582
Score = 54.5 bits (132), Expect = 4e-08
Identities = 34/126 (26%), Positives = 54/126 (42%), Gaps = 16/126 (12%)
Query: 337 KRKSKDIVNASG-IQLRGLTKIYKTGKKAV-DNLTLDMYQNQITVLLGHNGAGKSTTMSM 394
+ I A+G ++ R +T Y + N+ L + + L+G +G+GKST S+
Sbjct: 329 DEGKRVIDRATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASL 388
Query: 395 LTGLIIPTSGTAYIDGHDIW-YEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAKGKEFN 453
+T G +DGHD+ Y + +R + L Q LF + TV N
Sbjct: 389 ITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFND-TV------------AN 435
Query: 454 GITYGR 459
I Y R
Sbjct: 436 NIAYAR 441
Score = 32.2 bits (74), Expect = 0.41
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 296 YKTGKKAV-DNLTLDMYQNQITVLLGHNGAGKSTTMSMLT 334
Y + N+ L + + L+G +G+GKST S++T
Sbjct: 351 YPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLIT 390
Score = 29.5 bits (67), Expect = 3.1
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 50 PTSGTAYIDGHDIW-YEMGKVRESLGLCPQYDLLF 83
G +DGHD+ Y + +R + L Q LF
Sbjct: 395 IDEGHILMDGHDLREYTLASLRNQVALVSQNVHLF 429
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic
peptide, membrane protein; 3.80A {Mus musculus} PDB:
3g61_A* 3g60_A*
Length = 1284
Score = 55.0 bits (133), Expect = 4e-08
Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 26/119 (21%)
Query: 349 IQLRGLTKIYKT--GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTA 406
+Q G+ Y T + L+L++ + Q L+G +G GKST + +L P +G+
Sbjct: 1031 VQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSV 1090
Query: 407 YIDGHDI------WYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGR 459
++DG +I W R LG+ Q +LF+ ++ + N I YG
Sbjct: 1091 FLDGKEIKQLNVQWL-----RAQLGIVSQEPILFDC-SIAE-----------N-IAYGD 1131
Score = 52.0 bits (125), Expect = 3e-07
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 13/94 (13%)
Query: 349 IQLRGLTKIYKT--GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTA 406
++ + + Y + + + L L + Q L+G++G GKSTT+ ++ L P G
Sbjct: 388 LEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMV 447
Query: 407 YIDGHDI------WYEMGKVRESLGLCPQYDLLF 434
IDG DI + RE +G+ Q +LF
Sbjct: 448 SIDGQDIRTINVRYL-----REIIGVVSQEPVLF 476
Score = 34.2 bits (79), Expect = 0.11
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 304 DNLTLDMYQNQITVLLGHNGAGKSTTMSML 333
L+L++ + Q L+G +G GKST + +L
Sbjct: 1050 QGLSLEVKKGQTLALVGSSGCGKSTVVQLL 1079
Score = 33.1 bits (76), Expect = 0.23
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 304 DNLTLDMYQNQITVLLGHNGAGKSTTMSMLT 334
L L + Q L+G++G GKSTT+ ++
Sbjct: 407 KGLNLKVKSGQTVALVGNSGCGKSTTVQLMQ 437
Score = 30.4 bits (69), Expect = 1.8
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 11/41 (26%)
Query: 50 PTSGTAYIDGHDI------WYEMGKVRESLGLCPQYDLLFE 84
P +G+ ++DG +I W R LG+ Q +LF+
Sbjct: 1085 PMAGSVFLDGKEIKQLNVQWL-----RAQLGIVSQEPILFD 1120
Score = 28.5 bits (64), Expect = 6.6
Identities = 14/50 (28%), Positives = 19/50 (38%), Gaps = 15/50 (30%)
Query: 44 IAGLII----PTSGTAYIDGHDI------WYEMGKVRESLGLCPQYDLLF 83
L+ P G IDG DI + RE +G+ Q +LF
Sbjct: 432 TVQLMQRLYDPLDGMVSIDGQDIRTINVRYL-----REIIGVVSQEPVLF 476
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; 5.50A {Vibrio cholerae}
Length = 582
Score = 52.2 bits (126), Expect = 2e-07
Identities = 29/123 (23%), Positives = 55/123 (44%), Gaps = 16/123 (13%)
Query: 340 SKDIVNASG-IQLRGLTKIYKTGKKAV-DNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 397
+ +G + ++ +T Y+ +K +++ + Q + L+G +G+GKST ++ T
Sbjct: 332 KYEAERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTR 391
Query: 398 LIIPTSGTAYIDGHDIW-YEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAKGKEFNGIT 456
SG+ +DGHD+ Y++ +R L Q LF + T+ N I
Sbjct: 392 FYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFND-TI------------ANNIA 438
Query: 457 YGR 459
Y
Sbjct: 439 YAA 441
Score = 32.2 bits (74), Expect = 0.44
Identities = 11/40 (27%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 296 YKTGKKAV-DNLTLDMYQNQITVLLGHNGAGKSTTMSMLT 334
Y+ +K +++ + Q + L+G +G+GKST ++ T
Sbjct: 351 YQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFT 390
Score = 28.7 bits (65), Expect = 4.8
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 50 PTSGTAYIDGHDIW-YEMGKVRESLGLCPQYDLLF 83
SG+ +DGHD+ Y++ +R L Q LF
Sbjct: 395 VDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLF 429
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET:
ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A*
2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Length = 263
Score = 50.3 bits (121), Expect = 4e-07
Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 6/95 (6%)
Query: 349 IQLRGLTKIYKTGK-KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAY 407
I + L K + G + + + + + + ++ V++G +G+GKST + L L G
Sbjct: 25 IDVHQLKKSF--GSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEII 82
Query: 408 IDGHDIWY---EMGKVRESLGLCPQYDLLFEELTV 439
IDG ++ + KVRE +G+ Q LF +TV
Sbjct: 83 IDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTV 117
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 51.2 bits (122), Expect = 6e-07
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Query: 331 SMLTGYKRKSKDIVNASGIQLRGLTKIYKTGKKAV-DNLTLDMYQNQITVLLGHNGAGKS 389
L G K K K I +++ + Y K ++ + ++G NGAGKS
Sbjct: 659 GYLEGVKTKQKAI-----VKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKS 713
Query: 390 TTMSMLTGLIIPTSGTAYIDGH 411
T +++LTG ++PTSG Y +
Sbjct: 714 TLINVLTGELLPTSGEVYTHEN 735
Score = 39.2 bits (91), Expect = 0.003
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 300 KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
K + ++ + ++G NGAGKST +++LTG
Sbjct: 686 KPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTG 721
Score = 38.5 bits (89), Expect = 0.005
Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 2/55 (3%)
Query: 361 GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY 415
K ++ L + + + + G NG GKST M + + G + Y
Sbjct: 447 AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVD--GFPTQEECRTVY 499
Score = 37.3 bits (86), Expect = 0.012
Identities = 15/91 (16%), Positives = 29/91 (31%)
Query: 245 MMAIMGVIHLVAALYIEAVWPGSTGLPLPWYYPIQATYWLEGEVGFCLTKIYKTGKKAVD 304
+ +H A I + +P ++ C + K ++
Sbjct: 393 TPYMTIFLHEKKAKDILDEFRKRAVDNIPVGPNFDDEEDEGEDLCNCEFSLAYGAKILLN 452
Query: 305 NLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
L + + + + G NG GKST M +
Sbjct: 453 KTQLRLKRARRYGICGPNGCGKSTLMRAIAN 483
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial;
membrane protein, mitochondrial transport; HET: ACP LMT
CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Length = 595
Score = 50.3 bits (121), Expect = 8e-07
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 363 KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDI-WYEMGKVR 421
+ +L + +T L+G +G+GKST +S+L L P SGT +DGHDI +R
Sbjct: 358 PIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLR 417
Query: 422 ESLGLCPQYDLLF 434
+G Q +LF
Sbjct: 418 SKIGTVSQEPILF 430
Score = 32.6 bits (75), Expect = 0.33
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 301 KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSML 333
+ +L + +T L+G +G+GKST +S+L
Sbjct: 358 PIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLL 390
Score = 29.9 bits (68), Expect = 2.4
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 50 PTSGTAYIDGHDI-WYEMGKVRESLGLCPQYDLLF 83
P SGT +DGHDI +R +G Q +LF
Sbjct: 396 PASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILF 430
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter,
transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Length = 587
Score = 49.9 bits (120), Expect = 1e-06
Identities = 23/94 (24%), Positives = 47/94 (50%), Gaps = 5/94 (5%)
Query: 359 KTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIW-YEM 417
+ + + + + +LG G+GKST M+++ LI P G +D D+ ++
Sbjct: 353 ENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKL 412
Query: 418 GKVRESLGLCPQYDLLFEELTVEDHLQFFAKGKE 451
+R + PQ +LF T++++L++ G+E
Sbjct: 413 KDLRGHISAVPQETVLFSG-TIKENLKW---GRE 442
Score = 34.5 bits (80), Expect = 0.085
Identities = 11/46 (23%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 50 PTSGTAYIDGHDIW-YEMGKVRESLGLCPQYDLLFEELTVEDHLQF 94
P G +D D+ ++ +R + PQ +LF T++++L++
Sbjct: 395 PERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSG-TIKENLKW 439
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane
protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Length = 240
Score = 47.9 bits (115), Expect = 2e-06
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 379 VLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDI 413
VLLG GAGKS + ++ G++ P G ++G DI
Sbjct: 28 VLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADI 62
Score = 32.1 bits (74), Expect = 0.31
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 44 IAGLIIPTSGTAYIDGHDI 62
IAG++ P G ++G DI
Sbjct: 44 IAGIVKPDRGEVRLNGADI 62
Score = 27.9 bits (63), Expect = 7.1
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 317 VLLGHNGAGKSTTMSMLTG 335
VLLG GAGKS + ++ G
Sbjct: 28 VLLGPTGAGKSVFLELIAG 46
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral
membrane protein, ATPase, ABC transporter, membrane
transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia
coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A*
3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Length = 381
Score = 48.3 bits (116), Expect = 3e-06
Identities = 21/68 (30%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 347 SGIQLRGLTKIYKTGK-KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGT 405
+ +QL+ +TK + G+ ++ LD+++ + V +G +G GKST + M+ GL TSG
Sbjct: 2 ASVQLQNVTKAW--GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGD 59
Query: 406 AYIDGHDI 413
+I +
Sbjct: 60 LFIGEKRM 67
Score = 31.0 bits (71), Expect = 0.84
Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 292 LTKIYKT--GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
L + K ++ LD+++ + V +G +G GKST + M+ G
Sbjct: 6 LQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAG 51
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural
genomics, structural genomics consortium, SGC; 2.20A
{Plasmodium yoelii yoelii str}
Length = 260
Score = 46.8 bits (112), Expect = 6e-06
Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 15/102 (14%)
Query: 359 KTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIW-YEM 417
+T + + ++ + L+GH G+GKST +L G I G ++ Y
Sbjct: 30 QTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNR 88
Query: 418 GKVRESLGLCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGR 459
+R +G+ PQ +LF E T+ I YG+
Sbjct: 89 NSIRSIIGIVPQDTILFNE-TI------------KYNILYGK 117
Score = 30.6 bits (70), Expect = 0.86
Identities = 10/37 (27%), Positives = 19/37 (51%)
Query: 297 KTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSML 333
+T + + ++ + L+GH G+GKST +L
Sbjct: 30 QTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLL 66
Score = 27.9 bits (63), Expect = 5.9
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 51 TSGTAYIDGHDIW-YEMGKVRESLGLCPQYDLLF 83
G I G ++ Y +R +G+ PQ +LF
Sbjct: 72 AEGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILF 105
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION
channel, transport protein, casse protein; 2.00A {Homo
sapiens} PDB: 2onj_A* 2hyd_A
Length = 578
Score = 47.6 bits (114), Expect = 7e-06
Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 15/104 (14%)
Query: 358 YKTGKKAV-DNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIW-Y 415
Y + + ++ L + + + +G +G GKST ++++ TSG IDGH+I +
Sbjct: 349 YNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDF 408
Query: 416 EMGKVRESLGLCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGR 459
G +R +GL Q ++LF + TV++ N I GR
Sbjct: 409 LTGSLRNQIGLVQQDNILFSD-TVKE-----------N-ILLGR 439
Score = 30.6 bits (70), Expect = 1.2
Identities = 8/40 (20%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 296 YKTGKKAV-DNLTLDMYQNQITVLLGHNGAGKSTTMSMLT 334
Y + + ++ L + + + +G +G GKST ++++
Sbjct: 349 YNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIP 388
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance
regulator, residues 1193-1427...; CFTR, ABC transporter,
nucleotide binding domain, NBD; HET: B44; 2.70A {Homo
sapiens}
Length = 390
Score = 47.0 bits (112), Expect = 7e-06
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Query: 349 IQLRGLTKIYKTGKKAV-DNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAY 407
+ ++ LT Y G A+ +N++ + Q LLG G+GKST +S L + T G
Sbjct: 20 MTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRL-LNTEGEIQ 78
Query: 408 IDGHDIWYEMG--KVRESLGLCPQYDLLFE 435
IDG + + R++ G+ PQ +F
Sbjct: 79 IDGVSW-DSITLEQWRKAFGVIPQKVFIFS 107
Score = 28.1 bits (63), Expect = 7.2
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 285 EGEVGFC-LTKIYKTGKKAV-DNLTLDMYQNQITVLLGHNGAGKSTTMSML 333
G++ LT Y G A+ +N++ + Q LLG G+GKST +S
Sbjct: 17 GGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAF 67
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP;
1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Length = 262
Score = 45.2 bits (108), Expect = 2e-05
Identities = 23/106 (21%), Positives = 45/106 (42%), Gaps = 17/106 (16%)
Query: 349 IQLRGLTKIYKTGKKAV-DNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAY 407
+ + L K Y G V ++L + ++G +G+GKST + + L P+ G
Sbjct: 7 LHVIDLHKRY--GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAII 64
Query: 408 IDGHDIWY--------------EMGKVRESLGLCPQYDLLFEELTV 439
++G +I ++ +R L + Q+ L+ +TV
Sbjct: 65 VNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTV 110
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.8 bits (105), Expect = 6e-05
Identities = 53/407 (13%), Positives = 110/407 (27%), Gaps = 101/407 (24%)
Query: 17 NSSELQDALTQPGAMKDY-IAGVVFDD----------DIAGLIIPTSGTAYIDGHDIWYE 65
+Q L + K Y +V + +++ I+ T T + D
Sbjct: 226 RIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLT--TRFKQVTDFLSA 283
Query: 66 MGKVRESLGLCPQYDLLFEELTVEDHLQFFAKW-RITYSSL------------------L 106
SL D LT ++ K+ L +
Sbjct: 284 ATTTHISL------DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI 337
Query: 107 RNWTIAWSPYHPELFNVMSRASFVIGYQLFDDDIAGREHLSRQVKSSCF--LVVFSGST- 163
R+ W + + ++ + + L F L VF S
Sbjct: 338 RDGLATWDNWKHVNCDKLTTI--------IESSL---NVLEPAEYRKMFDRLSVFPPSAH 386
Query: 164 -AATVGGLVWFG--TYSPYIILQP--KYSLMTFQQKLYTC---------LFSNSAMGYAF 209
+ L+WF +++ KYSL+ Q K T
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH 446
Query: 210 QNLLMYEGIGEGVQWNNVWKSVTPDDELCLGHILSMMAIMGVIHLVAALYIEAVWPGSTG 269
++++ + I + ++ D+ HI HL + E + T
Sbjct: 447 RSIVDHYNIPKTFDSDD--LIPPYLDQYFYSHI--------GHHLKNIEHPERM----TL 492
Query: 270 LPLPWYYPIQATYWLEGEVGFCLTKIYKTGKKAVDNLTLDM--YQNQITVLLGHNGAGKS 327
+ + + +LE ++ ++ N + Y+ I +
Sbjct: 493 FRM-VFLDFR---FLEQKI--RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVN 546
Query: 328 TTMSMLTG-----YKRKSKDIVNASGIQLRGLTK---IYKTGKKAVD 366
+ L K D++ ++ + + I++ K V
Sbjct: 547 AILDFLPKIEENLICSKYTDLL-----RIALMAEDEAIFEEAHKQVQ 588
Score = 37.1 bits (85), Expect = 0.012
Identities = 18/139 (12%), Positives = 39/139 (28%), Gaps = 33/139 (23%)
Query: 354 LTKIYKTGKKAVDNLTLDMYQ---NQITVLLGHNGAGKSTTMSMLTGLIIPTSGT-AYID 409
K + + L + + + ++ G G+GK+ + + + +D
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW----VALDVCLSYKVQCKMD 181
Query: 410 GHDIWYEMGKVRES-------LGLCPQYDLLFEEL------------TVEDHLQFFAKGK 450
W + L Q D + +++ L+ K K
Sbjct: 182 FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK 241
Query: 451 EFNGITYGRALLLMMSYVW 469
Y LL+ + V
Sbjct: 242 P-----YENCLLV-LLNVQ 254
Score = 35.6 bits (81), Expect = 0.043
Identities = 13/89 (14%), Positives = 29/89 (32%), Gaps = 15/89 (16%)
Query: 292 LTKIYKTGKKAVDNLTLDMYQ---NQITVLLGHNGAGKSTTMSMLTGYKRKSKDIVNASG 348
K + + L + + + ++ G G+GK+ + D+ +
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW----VAL------DVCLSYK 175
Query: 349 IQLRGLTKIY--KTGKKAVDNLTLDMYQN 375
+Q + KI+ L+M Q
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQK 204
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.9 bits (103), Expect = 1e-04
Identities = 84/549 (15%), Positives = 151/549 (27%), Gaps = 216/549 (39%)
Query: 15 FANSSELQD--ALTQPGAMKDYIAGVVFDDDIAGLIIPTSGT-------AYIDGHDIWYE 65
F +S+LQ+ P + + A DD+ PT+ Y+ +
Sbjct: 27 FFIASQLQEQFNKILPEPTEGFAA----DDE------PTTPAELVGKFLGYVSSLVEPSK 76
Query: 66 MGKVRESLGLCPQYDLLFEE--LTVED-HLQFFAKWRITYSSLLRNWTIAWSPYHPELFN 122
+G+ + L LC FE L D H +A
Sbjct: 77 VGQFDQVLNLCLTE---FENCYLEGNDIH------------------ALAAKLLQENDTT 115
Query: 123 VMSRASFVIGYQLFDDDIAGREHLSRQVKSSCFLVVFSGST--AATVGG----LVWFG-- 174
++ + Y I + ++ S+ F V G+ A GG +F
Sbjct: 116 LVKTKELIKNY--ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEEL 173
Query: 175 -----TYSPYIILQPKYSLMTF-QQKLYTCLFSNSAMGYAFQNLLMYEGIGEGVQW-NNV 227
TY + L+ F + L + + F +G+ ++W N
Sbjct: 174 RDLYQTYHVLVG-----DLIKFSAETLSELIRTTLDAEKVFT-----QGL-NILEWLEN- 221
Query: 228 WKSVTPDDE-LC-------------LGHILSMMAIMGVIH----------------LVAA 257
S TPD + L L H + ++G LV A
Sbjct: 222 -PSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTA 280
Query: 258 LYIEAV--WPGSTGLPLPWYYP-----IQATYWLEGEVGFCLTKIYKTGKKAVDNLTLDM 310
+ I W ++ I ++ +G + Y +L +
Sbjct: 281 VAIAETDSWES--------FFVSVRKAITVLFF----IGVRCYEAY-----PNTSLPPSI 323
Query: 311 YQNQITVLLGHNGAGKSTTMSMLTGYKRK---------------SKDI----VNA----- 346
++ + N G + M ++ ++ K + VN
Sbjct: 324 LEDSLE-----NNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLV 378
Query: 347 -SG--IQLRGL---------------TKIYKTGKK---------------------AVDN 367
SG L GL ++I + +K A D
Sbjct: 379 VSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDL 438
Query: 368 LTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLC 427
+ D+ +N ++ K + IP T DG D+ G + E +
Sbjct: 439 INKDLVKNNVSF------NAKD--------IQIPVYDTF--DGSDLRVLSGSISERI--- 479
Query: 428 PQYDLLFEE 436
D +
Sbjct: 480 --VDCIIRL 486
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288;
multidrug transporter, transport protein; HET: ANP;
2.90A {Thermotoga maritima}
Length = 598
Score = 43.3 bits (103), Expect = 1e-04
Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 16/104 (15%)
Query: 358 YKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEM 417
Y K + ++T + Q L+G G+GK+T +++L G +DG DI ++
Sbjct: 364 YDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDI-RKI 422
Query: 418 GK--VRESLGLCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGR 459
+ +R S+G+ Q +LF TV++ N + YG
Sbjct: 423 KRSSLRSSIGIVLQDTILFST-TVKE-----------N-LKYGN 453
Score = 29.8 bits (68), Expect = 2.3
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 296 YKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLT 334
Y K + ++T + Q L+G G+GK+T +++L
Sbjct: 364 YDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLM 402
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, binding; 1.70A {Thermus thermophilus} PDB:
2d2f_A*
Length = 250
Score = 36.3 bits (85), Expect = 0.011
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 361 GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIP----TSGTAYIDGHDI 413
G+ + + L + + ++ L+G NGAGKST +L G P G +DG +I
Sbjct: 15 GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGD--PEYTVERGEILLDGENI 69
Score = 31.3 bits (72), Expect = 0.53
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 299 GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
G+ + + L + + ++ L+G NGAGKST +L G
Sbjct: 15 GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAG 51
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning;
2.20A {Escherichia coli} SCOP: c.37.1.12
Length = 227
Score = 36.0 bits (82), Expect = 0.017
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 366 DNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIP 401
T D+ +T L G NGAGKSTTM+ +IP
Sbjct: 19 FARTFDL-DELVTTLSGGNGAGKSTTMAAFVTALIP 53
Score = 33.3 bits (75), Expect = 0.11
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 304 DNLTLDMYQNQITVLLGHNGAGKSTTM 330
T D+ +T L G NGAGKSTTM
Sbjct: 19 FARTFDL-DELVTTLSGGNGAGKSTTM 44
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster,
ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding;
HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Length = 267
Score = 36.0 bits (84), Expect = 0.017
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 361 GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIP----TSGTAYIDGHDI 413
K + L+LD++ ++ ++G NG+GKST + L G T GT G D+
Sbjct: 32 DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGR--EDYEVTGGTVEFKGKDL 86
Score = 31.0 bits (71), Expect = 0.69
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 299 GKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
K + L+LD++ ++ ++G NG+GKST + L G
Sbjct: 32 DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAG 68
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC
transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo
sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A
1ckz_A
Length = 229
Score = 35.2 bits (82), Expect = 0.026
Identities = 18/103 (17%), Positives = 43/103 (41%), Gaps = 16/103 (15%)
Query: 359 KTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMG 418
+ G + ++ + + Q+ + G GAGK++ + M+ G + P+ G G
Sbjct: 18 EGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------- 69
Query: 419 KVRESLGLCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRAL 461
+ C Q+ + T+++++ F G ++ Y +
Sbjct: 70 ----RISFCSQFSWIMPG-TIKENIIF---GVSYDEYRYRSVI 104
Score = 29.4 bits (67), Expect = 1.9
Identities = 12/52 (23%), Positives = 26/52 (50%)
Query: 297 KTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSKDIVNASG 348
+ G + ++ + + Q+ + G GAGK++ + M+ G S+ + SG
Sbjct: 18 EGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG 69
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome
condensation, condensin, SMC, N subunit, ABC-type
ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus
ducreyi} PDB: 3euk_A*
Length = 483
Score = 36.0 bits (82), Expect = 0.027
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 365 VDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIP 401
T D +T L G NGAGKSTTM+ +IP
Sbjct: 20 FFARTFDF-DELVTTLSGGNGAGKSTTMAGFVTALIP 55
Score = 33.7 bits (76), Expect = 0.14
Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 303 VDNLTLDMYQNQITVLLGHNGAGKSTTM 330
T D +T L G NGAGKSTTM
Sbjct: 20 FFARTFDF-DELVTTLSGGNGAGKSTTM 46
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein
transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Length = 320
Score = 35.6 bits (83), Expect = 0.030
Identities = 19/101 (18%), Positives = 40/101 (39%), Gaps = 13/101 (12%)
Query: 298 TGKKAVDNLTLDMYQNQITVLLGHNGA--GKSTTMSMLTGYKRKSKDIVNASGIQ--LRG 353
K D+ + ++ VL+ G + + ++K+K + I+ L
Sbjct: 27 KKYKQADD---EFFEELEDVLIQ---TDMGMKMVLKVSNLVRKKTKRDTSFENIKDALVE 80
Query: 354 -LTKIYKTGKKAVDNLTLDMYQNQITVLL--GHNGAGKSTT 391
L + Y +D +N++ + + G NG GK+T+
Sbjct: 81 SLYQAYTDNDWTNKKYRIDFKENRLNIFMLVGVNGTGKTTS 121
Score = 33.3 bits (77), Expect = 0.13
Identities = 12/60 (20%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 292 LTKIYKTGKKAVDNLTLDMYQNQITVLL--GHNGAGKSTTMSMLTG-YKRKSKDIVNASG 348
L + Y +D +N++ + + G NG GK+T+++ + Y ++ A+
Sbjct: 82 LYQAYTDNDWTNKKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAA 141
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding
cassette, transport protein; HET: ATP; 2.05A {Homo
sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A*
1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A*
1xfa_A*
Length = 290
Score = 35.4 bits (82), Expect = 0.031
Identities = 14/74 (18%), Positives = 33/74 (44%)
Query: 337 KRKSKDIVNASGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLT 396
K+ + + ++G + G + ++ + + Q+ + G GAGK++ + M+
Sbjct: 26 KQNNNNRKTSNGDDSLSFSNFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIM 85
Query: 397 GLIIPTSGTAYIDG 410
G + P+ G G
Sbjct: 86 GELEPSEGKIKHSG 99
Score = 31.9 bits (73), Expect = 0.41
Identities = 13/63 (20%), Positives = 28/63 (44%)
Query: 286 GEVGFCLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSKDIVN 345
G+ + G + ++ + + Q+ + G GAGK++ + M+ G S+ +
Sbjct: 37 GDDSLSFSNFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK 96
Query: 346 ASG 348
SG
Sbjct: 97 HSG 99
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins,
MRP1/ABCC1, nucleotide-binding domain, ATP- binding,
hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Length = 237
Score = 34.8 bits (81), Expect = 0.039
Identities = 17/103 (16%), Positives = 40/103 (38%), Gaps = 16/103 (15%)
Query: 359 KTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMG 418
++ ++ +T + + + ++G G GKS+ +S L + G I G
Sbjct: 15 RSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------- 66
Query: 419 KVRESLGLCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRAL 461
S+ PQ + + ++ +++ F G + Y +
Sbjct: 67 ----SVAYVPQQAWIQND-SLRENILF---GCQLEEPYYRSVI 101
Score = 29.1 bits (66), Expect = 2.7
Identities = 11/52 (21%), Positives = 24/52 (46%)
Query: 297 KTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSKDIVNASG 348
++ ++ +T + + + ++G G GKS+ +S L K + V G
Sbjct: 15 RSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG 66
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Length = 302
Score = 34.1 bits (79), Expect = 0.079
Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 312 QNQITVLLGHNGAGKSTTMSMLTGYKRKSKDIVNASGIQLRG 353
+ I +L G +G GKS+ +S LTG + +++++ + RG
Sbjct: 164 EGFICILAGPSGVGKSSILSRLTGEELRTQEVSEKTE---RG 202
Score = 32.9 bits (76), Expect = 0.17
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 374 QNQITVLLGHNGAGKSTTMSMLTGLIIPT 402
+ I +L G +G GKS+ +S LTG + T
Sbjct: 164 EGFICILAGPSGVGKSSILSRLTGEELRT 192
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural
genomics, BSGC structure funded by NIH, protein
structure initiative, PSI; HET: GDP; 2.80A {Thermotoga
maritima} SCOP: b.40.4.5 c.37.1.8
Length = 301
Score = 34.0 bits (79), Expect = 0.093
Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 16/71 (22%)
Query: 342 DIVNASGIQ-LRGLTKIYKTG----------KKAVDNLTLDMYQNQITVLLGHNGAGKST 390
D+ + ++ +R L +IY ++ L + + +I+ + G +G GKS+
Sbjct: 126 DLYDEDDLRKVRELEEIYSGLYPIVKTSAKTGMGIEEL-KEYLKGKISTMAGLSGVGKSS 184
Query: 391 TMSMLTGLIIP 401
L I P
Sbjct: 185 ----LLNAINP 191
Score = 32.5 bits (75), Expect = 0.25
Identities = 6/17 (35%), Positives = 12/17 (70%)
Query: 312 QNQITVLLGHNGAGKST 328
+ +I+ + G +G GKS+
Sbjct: 168 KGKISTMAGLSGVGKSS 184
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane,
nucleotide-binding, RNA replication, transmembrane,
viral protein; 1.80A {Japanese encephalitis virus} PDB:
2v8o_A 2qeq_A
Length = 459
Score = 34.0 bits (78), Expect = 0.095
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 298 TGKKAVDNLTLDMYQNQITVLLGHNGAGKST 328
G++ + + Q+TVL H G+GK+
Sbjct: 6 GGQQMGRGSPNMLRKRQMTVLDLHPGSGKTR 36
Score = 34.0 bits (78), Expect = 0.095
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 360 TGKKAVDNLTLDMYQNQITVLLGHNGAGKST 390
G++ + + Q+TVL H G+GK+
Sbjct: 6 GGQQMGRGSPNMLRKRQMTVLDLHPGSGKTR 36
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting,
simibi class GTPase, GTP-BIND membrane,
nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A
2xxa_B* 1fts_A
Length = 503
Score = 33.6 bits (77), Expect = 0.15
Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 17/101 (16%)
Query: 298 TGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG--YKRKSKDIVNASGIQ--LRG 353
GKK +D+ D+++ LL + G TT ++T K + +A + L+
Sbjct: 219 RGKK-IDD---DLFEELEEQLLIAD-VGVETTRKIITNLTEGASRKQLRDAEALYGLLKE 273
Query: 354 -LTKIYKTGKKAVDNLTLDMYQNQITVLL--GHNGAGKSTT 391
+ +I + L++ V+L G NG GK+TT
Sbjct: 274 EMGEILAKVDEP-----LNVEGKAPFVILMVGVNGVGKTTT 309
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication,
viral replication, nucleotide-binding; 2.10A {Kokobera
virus} PDB: 2v6j_A
Length = 431
Score = 32.9 bits (75), Expect = 0.20
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 312 QNQITVLLGHNGAGKST 328
+ ++TVL H GAGK+
Sbjct: 1 KRELTVLDLHPGAGKTR 17
Score = 32.9 bits (75), Expect = 0.20
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 374 QNQITVLLGHNGAGKST 390
+ ++TVL H GAGK+
Sbjct: 1 KRELTVLDLHPGAGKTR 17
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding,
hydrolase, nucleotide-binding; HET: GDP; 2.25A
{Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Length = 358
Score = 33.0 bits (76), Expect = 0.21
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 312 QNQITVLLGHNGAGKST 328
+I++ G +G GKS+
Sbjct: 214 TGRISIFAGQSGVGKSS 230
Score = 33.0 bits (76), Expect = 0.21
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 374 QNQITVLLGHNGAGKST 390
+I++ G +G GKS+
Sbjct: 214 TGRISIFAGQSGVGKSS 230
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with
oligonucleotide binding fold, central GTP binding
domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5
c.37.1.8
Length = 307
Score = 32.2 bits (74), Expect = 0.31
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 312 QNQITVLLGHNGAGKST 328
Q++ TV G +G GKS+
Sbjct: 172 QDKTTVFAGQSGVGKSS 188
Score = 32.2 bits (74), Expect = 0.31
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 374 QNQITVLLGHNGAGKST 390
Q++ TV G +G GKS+
Sbjct: 172 QDKTTVFAGQSGVGKSS 188
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC
transporter ATPase domain-like; HET: DNA ADP; 2.70A
{Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Length = 371
Score = 32.1 bits (73), Expect = 0.41
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 312 QNQITVLLGHNGAGKST 328
+ I ++G NG+GKS+
Sbjct: 24 EKGIVAIIGENGSGKSS 40
Score = 32.1 bits (73), Expect = 0.41
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 374 QNQITVLLGHNGAGKST 390
+ I ++G NG+GKS+
Sbjct: 24 EKGIVAIIGENGSGKSS 40
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATPase, exonuclease, endonucle binding,
DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB:
3qkr_A*
Length = 203
Score = 31.1 bits (71), Expect = 0.48
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 312 QNQITVLLGHNGAGKST 328
+ I +++G NG+GKS+
Sbjct: 22 KEGINLIIGQNGSGKSS 38
Score = 31.1 bits (71), Expect = 0.48
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 374 QNQITVLLGHNGAGKST 390
+ I +++G NG+GKS+
Sbjct: 22 KEGINLIIGQNGSGKSS 38
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic
subunit]; helicase, flavivirus, DEAD-BOX, ATPase,
rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP:
c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Length = 440
Score = 31.3 bits (71), Expect = 0.75
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 312 QNQITVLLGHNGAGKST 328
+ TVL H GAGK+
Sbjct: 7 KGMTTVLDFHPGAGKTR 23
Score = 31.3 bits (71), Expect = 0.75
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 374 QNQITVLLGHNGAGKST 390
+ TVL H GAGK+
Sbjct: 7 KGMTTVLDFHPGAGKTR 23
>2og2_A Putative signal recognition particle receptor; nucleotide-binding,
protein transport; 2.00A {Arabidopsis thaliana}
Length = 359
Score = 30.7 bits (70), Expect = 0.88
Identities = 17/98 (17%), Positives = 35/98 (35%), Gaps = 8/98 (8%)
Query: 298 TGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSKDIVNASGIQLRGLTK- 356
A + + LL + G T+ ++ + SG +++ K
Sbjct: 80 FWNLAETD---RVLDELEEALLVSD-FGPKITVRIVERLREDIMSGKLKSGSEIKDALKE 135
Query: 357 -IYKTGKKAVDNLTLDMYQNQITVLL--GHNGAGKSTT 391
+ + K L + + V++ G NG GK+T+
Sbjct: 136 SVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTS 173
Score = 27.6 bits (62), Expect = 8.5
Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 304 DNLTLDMYQNQITVLL--GHNGAGKSTTMSMLTG-YKRKSKDIVNASG 348
L + + V++ G NG GK+T++ L K + ++ A+G
Sbjct: 146 SKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAG 193
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication;
1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A*
1us8_A*
Length = 149
Score = 30.0 bits (68), Expect = 0.94
Identities = 7/24 (29%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Query: 305 NLTLDMYQNQITVLLGHNGAGKST 328
+ ++ ++ I +++G NG+GKS+
Sbjct: 16 DTVVE-FKEGINLIIGQNGSGKSS 38
Score = 30.0 bits (68), Expect = 0.94
Identities = 7/24 (29%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Query: 367 NLTLDMYQNQITVLLGHNGAGKST 390
+ ++ ++ I +++G NG+GKS+
Sbjct: 16 DTVVE-FKEGINLIIGQNGSGKSS 38
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein
translocation, GTP-binding, nucleotide-binding, protein
transport; 1.75A {Arabidopsis thaliana}
Length = 302
Score = 30.6 bits (70), Expect = 0.98
Identities = 17/98 (17%), Positives = 35/98 (35%), Gaps = 8/98 (8%)
Query: 298 TGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSKDIVNASGIQLRGLTK- 356
A + + LL + G T+ ++ + SG +++ K
Sbjct: 23 FWNLAETD---RVLDELEEALLVSD-FGPKITVRIVERLREDIMSGKLKSGSEIKDALKE 78
Query: 357 -IYKTGKKAVDNLTLDMYQNQITVLL--GHNGAGKSTT 391
+ + K L + + V++ G NG GK+T+
Sbjct: 79 SVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTS 116
Score = 27.5 bits (62), Expect = 9.0
Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 304 DNLTLDMYQNQITVLL--GHNGAGKSTTMSMLTG-YKRKSKDIVNASG 348
L + + V++ G NG GK+T++ L K + ++ A+G
Sbjct: 89 SKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAG 136
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATP binding, DNA bindi MRE11, replication;
HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A*
1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Length = 339
Score = 30.8 bits (69), Expect = 1.1
Identities = 7/14 (50%), Positives = 12/14 (85%)
Query: 315 ITVLLGHNGAGKST 328
I +++G NG+GKS+
Sbjct: 25 INLIIGQNGSGKSS 38
Score = 30.8 bits (69), Expect = 1.1
Identities = 7/14 (50%), Positives = 12/14 (85%)
Query: 377 ITVLLGHNGAGKST 390
I +++G NG+GKS+
Sbjct: 25 INLIIGQNGSGKSS 38
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding,
viral nucleoprotein, endoplasmic reticulum, helicase,
hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A*
2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A
2bhr_A
Length = 451
Score = 30.6 bits (69), Expect = 1.2
Identities = 6/17 (35%), Positives = 12/17 (70%)
Query: 312 QNQITVLLGHNGAGKST 328
+ ++T++ H GAGK+
Sbjct: 18 KKRLTIMDLHPGAGKTK 34
Score = 30.6 bits (69), Expect = 1.2
Identities = 6/17 (35%), Positives = 12/17 (70%)
Query: 374 QNQITVLLGHNGAGKST 390
+ ++T++ H GAGK+
Sbjct: 18 KKRLTIMDLHPGAGKTK 34
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein
struct initiative, northeast structural genomics
consortium, NESG, function; 2.40A {Bacillus halodurans}
SCOP: c.37.1.25
Length = 189
Score = 29.5 bits (66), Expect = 1.6
Identities = 16/89 (17%), Positives = 32/89 (35%), Gaps = 5/89 (5%)
Query: 375 NQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLF 434
++ ++ G G GKSTT L + +AYI+G I + + + L
Sbjct: 2 KKLYIITGPAGVGKSTTCKRLAAQL---DNSAYIEGDIINHMVVGGYRPPWESDELLALT 58
Query: 435 EELTVEDHLQFFAKGKE--FNGITYGRAL 461
+ + + F + + I +
Sbjct: 59 WKNITDLTVNFLLAQNDVVLDYIAFPDEA 87
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Length = 260
Score = 29.6 bits (66), Expect = 2.1
Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 6/54 (11%)
Query: 317 VLLGHNGAGKSTTMSMLTGYKRKSKDIVNASGIQLRGLTKIYKTGKKAVDNLTL 370
+L+G G GKS + + + S + + LTK + + N +
Sbjct: 26 ILVGKTGTGKSAAGNSILRKQ------AFESKLGSQTLTKTCSKSQGSWGNREI 73
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC,
coiled coil, GTP- binding, nucleotide-binding, immune
system; HET: GDP; 2.15A {Homo sapiens}
Length = 239
Score = 29.2 bits (65), Expect = 2.3
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 6/54 (11%)
Query: 317 VLLGHNGAGKSTTMSMLTGYKRKSKDIVNASGIQLRGLTKIYKTGKKAVDNLTL 370
VL+G GAGKS T + + G K V SG + +TK + + L
Sbjct: 33 VLVGKTGAGKSATGNSILGRK------VFHSGTAAKSITKKCEKRSSSWKETEL 80
Score = 27.3 bits (60), Expect = 9.5
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 379 VLLGHNGAGKSTTMSMLTG 397
VL+G GAGKS T + + G
Sbjct: 33 VLVGKTGAGKSATGNSILG 51
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga
maritima} PDB: 3qg5_A 3tho_A*
Length = 365
Score = 29.4 bits (66), Expect = 2.7
Identities = 11/17 (64%), Positives = 14/17 (82%)
Query: 312 QNQITVLLGHNGAGKST 328
Q+ ITV+ G NGAGKS+
Sbjct: 22 QSGITVVEGPNGAGKSS 38
Score = 29.4 bits (66), Expect = 2.7
Identities = 11/17 (64%), Positives = 14/17 (82%)
Query: 374 QNQITVLLGHNGAGKST 390
Q+ ITV+ G NGAGKS+
Sbjct: 22 QSGITVVEGPNGAGKSS 38
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Length = 347
Score = 28.8 bits (65), Expect = 4.5
Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 292 LTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGY 336
+ + + G +A+D L L Q + +G GKST + M+
Sbjct: 51 IDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNG 94
Score = 28.4 bits (64), Expect = 4.7
Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 352 RGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLT 396
+ + + + G +A+D L L Q + +G GKST + M+
Sbjct: 49 QVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMIC 92
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL
helix motif, transcription regulator; 3.20A
{Streptococcus pneumoniae}
Length = 253
Score = 28.3 bits (62), Expect = 4.6
Identities = 10/50 (20%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 300 KKAVDNLTLDMYQNQ---ITVLLGHNGAGKSTTMSMLTGYKRKSKDIVNA 346
+ + +LT ++ +L G +GAGK+T + + + I++
Sbjct: 16 ARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDG 65
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer,
nucleotide twinning, protein complex, protein transport;
HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1
c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D
2iyl_D* 2cnw_D* 2j7p_D*
Length = 304
Score = 28.7 bits (65), Expect = 4.7
Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 7/74 (9%)
Query: 325 GKSTTMSMLTGYKRKSKDIVNASGIQ-----LRGLTKIYKTGKKAVDNLTLDMYQNQITV 379
G S T +L + + + + + L + K + + + V
Sbjct: 45 GLSATEEILQEVRASGRKDLKEAVKEKLVGMLEPDERRATLRKLGFNPQKPKPVEPKGRV 104
Query: 380 LL--GHNGAGKSTT 391
+L G NG GK+TT
Sbjct: 105 VLVVGVNGVGKTTT 118
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS
protein structure initiative, PSI, joint center for
structu genomics; HET: CIT; 1.60A {Thermotoga maritima}
SCOP: a.24.13.1 c.37.1.10
Length = 306
Score = 28.3 bits (64), Expect = 5.0
Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 11/69 (15%)
Query: 325 GKSTTMSMLTGYKRKSKDIVNASGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLL--G 382
G TT +L + K D + + + + + L++ V++ G
Sbjct: 61 GVETTEYILERLEEKDGDALESLKEIILEILN---------FDTKLNVPPEPPFVIMVVG 111
Query: 383 HNGAGKSTT 391
NG GK+T+
Sbjct: 112 VNGTGKTTS 120
>1f60_A Elongation factor EEF1A; protein-protein complex, translation;
1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1
c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Length = 458
Score = 28.5 bits (64), Expect = 5.6
Identities = 26/82 (31%), Positives = 34/82 (41%), Gaps = 18/82 (21%)
Query: 379 VLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDI------WYEMGKVRESLGLCPQYDL 432
V++GH +GKSTT TG +I G ID I E+GK S D
Sbjct: 11 VVIGHVDSGKSTT----TGHLIYKCGG--IDKRTIEKFEKEAAELGK--GSFKYAWVLDK 62
Query: 433 LFEE----LTVEDHLQFFAKGK 450
L E +T++ L F K
Sbjct: 63 LKAERERGITIDIALWKFETPK 84
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein
complex, translation regulation; 2.74A
{Schizosaccharomyces pombe}
Length = 592
Score = 28.2 bits (63), Expect = 6.8
Identities = 8/58 (13%), Positives = 20/58 (34%), Gaps = 25/58 (43%)
Query: 317 VLLGHNGAGKSTTMSMLTGYKRKSKDIVNASGIQLRGLTKIYKTGKKAVDNLTLDMYQ 374
V+ GH +GKST + + +++ G +++ ++
Sbjct: 181 VVTGHVDSGKSTMLGRI-----------------------MFELG--EINSRSMQKLH 213
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR;
HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB:
1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Length = 262
Score = 27.3 bits (60), Expect = 9.8
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 315 ITVLLGHNGAGKSTTMSMLTGYKRKSKDIV 344
I V +G G+GK+T Y + +
Sbjct: 16 IVVFVGTAGSGKTTLTGEFGRYLEDNYKVA 45
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.137 0.424
Gapped
Lambda K H
0.267 0.0710 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,529,086
Number of extensions: 468013
Number of successful extensions: 1740
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1692
Number of HSP's successfully gapped: 203
Length of query: 474
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 377
Effective length of database: 3,993,456
Effective search space: 1505532912
Effective search space used: 1505532912
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.5 bits)