RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7411
(474 letters)
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga
maritima [TaxId: 2336]}
Length = 238
Score = 100 bits (249), Expect = 1e-24
Identities = 26/100 (26%), Positives = 56/100 (56%), Gaps = 1/100 (1%)
Query: 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYI 408
+ ++ L K K+ + ++ ++ + +I L+G NGAGK+TT+ +++ LI P+SG +
Sbjct: 3 VVVKDLRKRIG-KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTV 61
Query: 409 DGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAK 448
G ++ E +VR+ + P+ + + ++L+F A
Sbjct: 62 FGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAG 101
Score = 59.6 bits (144), Expect = 8e-11
Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 292 LTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSKDIV 344
L K K+ + ++ ++ + +I L+G NGAGK+TT+ +++ + S IV
Sbjct: 8 LRKRIG-KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIV 59
Score = 46.5 bits (110), Expect = 2e-06
Identities = 14/56 (25%), Positives = 29/56 (51%)
Query: 44 IAGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAKWR 99
I+ LI P+SG + G ++ E +VR+ + P+ + + ++L+F A +
Sbjct: 48 ISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY 103
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal
domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 239
Score = 96.4 bits (240), Expect = 2e-23
Identities = 33/106 (31%), Positives = 54/106 (50%), Gaps = 2/106 (1%)
Query: 343 IVNASGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPT 402
++ ++L LTK + AV+ L L + + VLLG +G GK+TT+ M+ GL PT
Sbjct: 1 VIKMVEVKLENLTKRFG-NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT 59
Query: 403 SGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAK 448
G Y D+ Y K R + + Q ++ +TV +++ F K
Sbjct: 60 EGRIYFGDRDVTYLPPKDRN-ISMVFQSYAVWPHMTVYENIAFPLK 104
Score = 53.2 bits (128), Expect = 1e-08
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 292 LTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
LTK + AV+ L L + + VLLG +G GK+TT+ M+ G
Sbjct: 12 LTKRFG-NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAG 54
Score = 44.8 bits (106), Expect = 9e-06
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 44 IAGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAKWR 99
IAGL PT G Y D+ Y K R + + Q ++ +TV +++ F K +
Sbjct: 52 IAGLEEPTEGRIYFGDRDVTYLPPKDRN-ISMVFQSYAVWPHMTVYENIAFPLKIK 106
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 200
Score = 93.8 bits (233), Expect = 7e-23
Identities = 24/102 (23%), Positives = 51/102 (50%), Gaps = 6/102 (5%)
Query: 347 SGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTA 406
S +++R L+ Y K ++ +T+ + + + G NG GK+T + ++ + P G
Sbjct: 1 SKLEIRDLSVGY--DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 58
Query: 407 YIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAK 448
+G I KV+ + P+ ++ +++VED+L+ A
Sbjct: 59 IYNGVPIT----KVKGKIFFLPEEIIVPRKISVEDYLKAVAS 96
Score = 57.2 bits (138), Expect = 4e-10
Identities = 13/58 (22%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 292 LTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSKDIVNASGI 349
L+ Y K ++ +T+ + + + G NG GK+T + ++ Y + K + +G+
Sbjct: 8 LSVGY--DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGV 63
Score = 41.8 bits (98), Expect = 5e-05
Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 44 IAGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAKWR 99
I+ + P G +G I KV+ + P+ ++ +++VED+L+ A
Sbjct: 47 ISTYLKPLKGEIIYNGVPIT----KVKGKIFFLPEEIIVPRKISVEDYLKAVASLY 98
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
permease {Salmonella typhimurium [TaxId: 90371]}
Length = 258
Score = 89.1 bits (221), Expect = 1e-20
Identities = 22/112 (19%), Positives = 49/112 (43%), Gaps = 15/112 (13%)
Query: 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYI 408
+ + L K Y G + + ++L + ++G +G+GKST + + L P+ G +
Sbjct: 3 LHVIDLHKRYG-GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIV 61
Query: 409 DGHDIWY--------------EMGKVRESLGLCPQYDLLFEELTVEDHLQFF 446
+G +I ++ +R L + Q+ L+ +TV +++
Sbjct: 62 NGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEA 113
Score = 54.5 bits (131), Expect = 6e-09
Identities = 11/44 (25%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 292 LTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
L K Y G + + ++L + ++G +G+GKST + +
Sbjct: 8 LHKRYG-GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINF 50
Score = 38.7 bits (90), Expect = 0.001
Identities = 12/66 (18%), Positives = 26/66 (39%), Gaps = 14/66 (21%)
Query: 44 IAGLIIPTSGTAYIDGHDIWY--------------EMGKVRESLGLCPQYDLLFEELTVE 89
I L P+ G ++G +I ++ +R L + Q+ L+ +TV
Sbjct: 48 INFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVL 107
Query: 90 DHLQFF 95
+++
Sbjct: 108 ENVMEA 113
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein
MetN {Escherichia coli [TaxId: 562]}
Length = 240
Score = 88.4 bits (219), Expect = 1e-20
Identities = 31/107 (28%), Positives = 57/107 (53%), Gaps = 7/107 (6%)
Query: 349 IQLRGLTKIYKTGK---KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGT 405
I+L +TK++ G +A++N++L + QI ++G +GAGKST + + L PT G+
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 406 AYIDGHDIW----YEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAK 448
+DG ++ E+ K R +G+ Q+ L TV ++ +
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLE 108
Score = 50.7 bits (121), Expect = 1e-07
Identities = 20/68 (29%), Positives = 40/68 (58%), Gaps = 3/68 (4%)
Query: 292 LTKIYKTGK---KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSKDIVNASG 348
+TK++ G +A++N++L + QI ++G +GAGKST + + +R ++ V G
Sbjct: 7 ITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDG 66
Query: 349 IQLRGLTK 356
+L L++
Sbjct: 67 QELTTLSE 74
Score = 41.4 bits (97), Expect = 1e-04
Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Query: 44 IAGLIIPTSGTAYIDGHDIW----YEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAKWR 99
+ L PT G+ +DG ++ E+ K R +G+ Q+ L TV ++ +
Sbjct: 51 VNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD 110
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 88.1 bits (218), Expect = 2e-20
Identities = 27/119 (22%), Positives = 54/119 (45%), Gaps = 19/119 (15%)
Query: 329 TMSMLTGYKRKSKDIVNASGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGK 388
TM +L + + K + KA+D +++ + + +T+++G NG+GK
Sbjct: 1 TMEIL----------------RTENIVKYFG-EFKALDGVSISVNKGDVTLIIGPNGSGK 43
Query: 389 STTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLC--PQYDLLFEELTVEDHLQF 445
ST ++++TG + G Y + DI + G+ Q +E+TV ++L
Sbjct: 44 STLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLI 102
Score = 55.8 bits (134), Expect = 2e-09
Identities = 14/44 (31%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 292 LTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
+ K + KA+D +++ + + +T+++G NG+GKST ++++TG
Sbjct: 10 IVKYFG-EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITG 52
Score = 36.5 bits (84), Expect = 0.005
Identities = 12/58 (20%), Positives = 20/58 (34%), Gaps = 2/58 (3%)
Query: 44 IAGLIIPTSGTAYIDGHDIWYEMGKVRESLGLC--PQYDLLFEELTVEDHLQFFAKWR 99
I G + G Y + DI + G+ Q +E+TV ++L
Sbjct: 50 ITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICP 107
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 230
Score = 84.9 bits (210), Expect = 2e-19
Identities = 30/116 (25%), Positives = 56/116 (48%), Gaps = 8/116 (6%)
Query: 349 IQLRGLTKIYKTGK---KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGT 405
I+L+ +TK YK G+ A+ N+ L++ + + ++G +G+GKST ++++ L PT G
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 406 AYIDGHDIWYEMGK-----VRESLGLCPQYDLLFEELTVEDHLQFFAKGKEFNGIT 456
YID R+ +G Q L LT ++++ K ++
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMS 117
Score = 49.1 bits (117), Expect = 3e-07
Identities = 17/68 (25%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 292 LTKIYKTGK---KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSKDIVNASG 348
+TK YK G+ A+ N+ L++ + + ++G +G+GKST ++++ + ++ V
Sbjct: 7 VTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDN 66
Query: 349 IQLRGLTK 356
I+ L
Sbjct: 67 IKTNDLDD 74
Score = 37.5 bits (87), Expect = 0.002
Identities = 14/56 (25%), Positives = 20/56 (35%), Gaps = 5/56 (8%)
Query: 44 IAGLIIPTSGTAYIDGHDIWYEMGK-----VRESLGLCPQYDLLFEELTVEDHLQF 94
I L PT G YID R+ +G Q L LT ++++
Sbjct: 51 IGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVEL 106
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 232
Score = 83.1 bits (205), Expect = 9e-19
Identities = 27/100 (27%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
Query: 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYI 408
+QL+ +TK + ++ LD+++ + V +G +G GKST + M+ GL TSG +I
Sbjct: 1 VQLQNVTKAWG-EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFI 59
Query: 409 DGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAK 448
+ +G+ Q L+ L+V +++ F K
Sbjct: 60 GEKR-MNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLK 98
Score = 53.4 bits (128), Expect = 1e-08
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 292 LTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
+TK + ++ LD+++ + V +G +G GKST + M+ G
Sbjct: 6 VTKAWG-EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAG 48
Score = 33.4 bits (76), Expect = 0.040
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 44 IAGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAKWR 99
IAGL TSG +I + +G+ Q L+ L+V +++ F K
Sbjct: 46 IAGLETITSGDLFIGEKR-MNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA 100
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 81.7 bits (201), Expect = 3e-18
Identities = 28/107 (26%), Positives = 56/107 (52%), Gaps = 5/107 (4%)
Query: 347 SGIQLRGLTKIYKTGK-KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGT 405
I ++ ++K++K GK A+DN+ +++ + +LG +GAGK+T M ++ GL +P++G
Sbjct: 2 VRIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61
Query: 406 AYIDGHDIWY----EMGKVRESLGLCPQYDLLFEELTVEDHLQFFAK 448
Y D + + +G+ Q L+ LT +++ F
Sbjct: 62 LYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLT 108
Score = 57.4 bits (138), Expect = 5e-10
Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 292 LTKIYKTGK-KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSKDIVNASGIQ 350
++K++K GK A+DN+ +++ + +LG +GAGK+T M ++ G S +
Sbjct: 9 VSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRL 68
Query: 351 LRGLTK 356
+ K
Sbjct: 69 VASNGK 74
Score = 30.4 bits (68), Expect = 0.36
Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 4/70 (5%)
Query: 44 IAGLIIPTSGTAYIDGHDIWY----EMGKVRESLGLCPQYDLLFEELTVEDHLQFFAKWR 99
IAGL +P++G Y D + + +G+ Q L+ LT +++ F
Sbjct: 51 IAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM 110
Query: 100 ITYSSLLRNW 109
+R
Sbjct: 111 KMSKEEIRKR 120
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 80.9 bits (199), Expect = 5e-18
Identities = 26/98 (26%), Positives = 51/98 (52%), Gaps = 3/98 (3%)
Query: 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYI 408
I++ L++ + ++DNL+L + + V+LG GAGK+ + ++ G +P SG +
Sbjct: 2 IEIESLSRKW--KNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILL 59
Query: 409 DGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFF 446
DG D ++ + + Q LF + V+ +L+F
Sbjct: 60 DGKD-VTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFG 96
Score = 55.1 bits (132), Expect = 2e-09
Identities = 15/65 (23%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 292 LTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSKDIVNASGIQL 351
L++ + ++DNL+L + + V+LG GAGK+ + ++ G+ + G +
Sbjct: 7 LSRKW--KNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDV 64
Query: 352 RGLTK 356
L+
Sbjct: 65 TDLSP 69
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter
{Thermotoga maritima, TM1139 [TaxId: 2336]}
Length = 240
Score = 79.6 bits (196), Expect = 1e-17
Identities = 33/104 (31%), Positives = 54/104 (51%), Gaps = 3/104 (2%)
Query: 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYI 408
++++ L Y A+ + L + + QI L+G NGAGK+TT+S + GL+ G
Sbjct: 7 LEVQSLHVYYG-AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIF 65
Query: 409 DGHDIWYEMGKVRESLG--LCPQYDLLFEELTVEDHLQFFAKGK 450
+G DI + V +G L P+ +F ELTV ++L A +
Sbjct: 66 NGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNR 109
Score = 55.3 bits (133), Expect = 2e-09
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 292 LTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
L Y A+ + L + + QI L+G NGAGK+TT+S + G
Sbjct: 12 LHVYYG-AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAG 54
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 78.4 bits (193), Expect = 4e-17
Identities = 26/122 (21%), Positives = 44/122 (36%), Gaps = 1/122 (0%)
Query: 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYI 408
+ R + Y ++ + +++ + N I G +G GKST S+L PT+G I
Sbjct: 2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITI 61
Query: 409 DGHDIW-YEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLLMMSY 467
DG I + R +G Q + E+ + L S+
Sbjct: 62 DGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSF 121
Query: 468 VW 469
V
Sbjct: 122 VE 123
Score = 49.9 bits (119), Expect = 2e-07
Identities = 12/64 (18%), Positives = 29/64 (45%)
Query: 292 LTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSKDIVNASGIQL 351
+ Y ++ + +++ + N I G +G GKST S+L + + + + G +
Sbjct: 7 VDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPI 66
Query: 352 RGLT 355
++
Sbjct: 67 DNIS 70
Score = 32.5 bits (74), Expect = 0.068
Identities = 11/60 (18%), Positives = 17/60 (28%), Gaps = 1/60 (1%)
Query: 44 IAGLIIPTSGTAYIDGHDIW-YEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAKWRITY 102
+ PT+G IDG I + R +G Q + E+
Sbjct: 48 LERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDE 107
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 255
Score = 77.5 bits (191), Expect = 1e-16
Identities = 26/99 (26%), Positives = 52/99 (52%), Gaps = 3/99 (3%)
Query: 349 IQLRGLTKIYKTGKKAV-DNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAY 407
I + ++ Y + + ++ L + + + +G +G GKST ++++ TSG
Sbjct: 17 IDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQIL 76
Query: 408 IDGHDI-WYEMGKVRESLGLCPQYDLLFEELTVEDHLQF 445
IDGH+I + G +R +GL Q ++LF TV++++
Sbjct: 77 IDGHNIKDFLTGSLRNQIGLVQQDNILF-SDTVKENILL 114
Score = 47.5 bits (113), Expect = 1e-06
Identities = 10/73 (13%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Query: 285 EGEVGFC-LTKIYKTGKKAV-DNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSKD 342
+G + ++ Y + + ++ L + + + +G +G GKST ++++ + +
Sbjct: 14 QGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSG 73
Query: 343 IVNASGIQLRGLT 355
+ G ++
Sbjct: 74 QILIDGHNIKDFL 86
Score = 36.7 bits (85), Expect = 0.004
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 44 IAGLIIPTSGTAYIDGHDI-WYEMGKVRESLGLCPQYDLLFEELTVEDHLQF 94
I TSG IDGH+I + G +R +GL Q ++LF TV++++
Sbjct: 64 IPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILF-SDTVKENILL 114
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12
uptake, BtuD {Escherichia coli [TaxId: 562]}
Length = 231
Score = 76.1 bits (187), Expect = 2e-16
Identities = 21/104 (20%), Positives = 40/104 (38%), Gaps = 7/104 (6%)
Query: 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYI 408
+QL+ + + + L+ ++ +I L+G NGAGKST ++ + G+ G+
Sbjct: 4 MQLQDVAE-----STRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM-TSGKGSIQF 57
Query: 409 DGHDIW-YEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAKGKE 451
G + + K+ Q V +L K
Sbjct: 58 AGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKT 101
Score = 49.2 bits (117), Expect = 2e-07
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 300 KKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSKDI 343
+ L+ ++ +I L+G NGAGKST ++ + G I
Sbjct: 12 STRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSI 55
Score = 32.6 bits (74), Expect = 0.081
Identities = 8/57 (14%), Positives = 16/57 (28%), Gaps = 2/57 (3%)
Query: 44 IAGLIIPTSGTAYIDGHDIW-YEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAKWR 99
+AG+ G+ G + + K+ Q V +L +
Sbjct: 45 MAGMT-SGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDK 100
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 74.2 bits (182), Expect = 1e-15
Identities = 28/107 (26%), Positives = 53/107 (49%), Gaps = 6/107 (5%)
Query: 347 SGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTA 406
+G++L + K++ AV ++L++ + +LLG +G GK+TT+ M+ GL P+ G
Sbjct: 2 AGVRLVDVWKVFG-EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI 60
Query: 407 YIDGHDIWYEMGKVR-----ESLGLCPQYDLLFEELTVEDHLQFFAK 448
YI + + + + Q L+ +TV D++ F K
Sbjct: 61 YIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLK 107
Score = 53.8 bits (129), Expect = 9e-09
Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 292 LTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSKDIVNASGIQL 351
+ K++ AV ++L++ + +LLG +G GK+TT+ M+ G + S+ + +
Sbjct: 9 VWKVFG-EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLV 67
Query: 352 RGLTK 356
K
Sbjct: 68 ADPEK 72
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 73.4 bits (180), Expect = 2e-15
Identities = 25/106 (23%), Positives = 50/106 (47%), Gaps = 4/106 (3%)
Query: 349 IQLRGLTKIY--KTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTA 406
+Q + ++ Y + + LT + ++T L+G NG+GKST ++L L PT G
Sbjct: 12 VQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQL 71
Query: 407 YIDGHDI-WYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAKGKE 451
+DG + YE + + Q +F ++++++ + K
Sbjct: 72 LLDGKPLPQYEHRYLHRQVAAVGQEPQVF-GRSLQENIAYGLTQKP 116
Score = 48.7 bits (116), Expect = 5e-07
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Query: 284 LEGEVGFC-LTKIY--KTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKS 340
LEG V F ++ Y + + LT + ++T L+G NG+GKST ++L + +
Sbjct: 8 LEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT 67
Query: 341 KDIVNASGIQLRGLT 355
+ G L
Sbjct: 68 GGQLLLDGKPLPQYE 82
Score = 33.7 bits (77), Expect = 0.034
Identities = 11/59 (18%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Query: 44 IAGLIIPTSGTAYIDGHDI-WYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAKWRIT 101
+ L PT G +DG + YE + + Q +F ++++++ + + T
Sbjct: 60 LQNLYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVF-GRSLQENIAYGLTQKPT 117
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding
protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId:
2234]}
Length = 240
Score = 70.4 bits (172), Expect = 2e-14
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 361 GKKAVDNLTLDM---YQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEM 417
+K + N L++ VLLG GAGKS + ++ G++ P G ++G DI +
Sbjct: 7 AEKRLGNFRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITP-L 65
Query: 418 GKVRESLGLCPQYDLLFEELTVEDHLQF 445
R +G PQ LF L+V ++ +
Sbjct: 66 PPERRGIGFVPQDYALFPHLSVYRNIAY 93
Score = 41.5 bits (97), Expect = 1e-04
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 44 IAGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAKW 98
IAG++ P G ++G DI + R +G PQ LF L+V ++ + +
Sbjct: 44 IAGIVKPDRGEVRLNGADITP-LPPERRGIGFVPQDYALFPHLSVYRNIAYGLRN 97
Score = 40.0 bits (93), Expect = 3e-04
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 299 GKKAVDNLTLDM---YQNQITVLLGHNGAGKSTTMSMLTG 335
+K + N L++ VLLG GAGKS + ++ G
Sbjct: 7 AEKRLGNFRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAG 46
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 71.1 bits (174), Expect = 2e-14
Identities = 15/95 (15%), Positives = 40/95 (42%), Gaps = 13/95 (13%)
Query: 357 IYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYE 416
+ G + N+ L++ + ++ + G G+GK++ + ++ G + + G G
Sbjct: 44 LCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGR----- 98
Query: 417 MGKVRESLGLCPQYDLLFEELTVEDHLQFFAKGKE 451
+ C Q+ + T+++++ F E
Sbjct: 99 -------VSFCSQFSWIMPG-TIKENIIFGVSYDE 125
Score = 49.9 bits (119), Expect = 3e-07
Identities = 15/64 (23%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 285 EGEVGFCLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSKDIV 344
E V F + + G + N+ L++ + ++ + G G+GK++ + ++ G S+ I+
Sbjct: 36 ENNVSF--SHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGII 93
Query: 345 NASG 348
SG
Sbjct: 94 KHSG 97
Score = 33.0 bits (75), Expect = 0.056
Identities = 8/56 (14%), Positives = 19/56 (33%), Gaps = 13/56 (23%)
Query: 44 IAGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAKWR 99
I G + + G G + C Q+ + T+++++ F +
Sbjct: 82 ILGELEASEGIIKHSGR------------VSFCSQFSWIMPG-TIKENIIFGVSYD 124
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
{Escherichia coli [TaxId: 562]}
Length = 241
Score = 68.8 bits (168), Expect = 8e-14
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 349 IQLRGLTKIYKTGKKAV-DNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAY 407
I R + YK + DN+ L + Q ++ ++G +G+GKST ++ IP +G
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 408 IDGHDI-WYEMGKVRESLGLCPQYDLLF 434
IDGHD+ + +R +G+ Q ++L
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNVLL 89
Score = 46.1 bits (109), Expect = 3e-06
Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Query: 292 LTKIYKTGKKAV-DNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSKDIVNASGIQ 350
+ YK + DN+ L + Q ++ ++G +G+GKST ++ + V G
Sbjct: 7 IRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHD 66
Query: 351 LRGLTK 356
L
Sbjct: 67 LALADP 72
Score = 28.3 bits (63), Expect = 1.9
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 44 IAGLIIPTSGTAYIDGHDI-WYEMGKVRESLGLCPQYDLLF 83
I IP +G IDGHD+ + +R +G+ Q ++L
Sbjct: 49 IQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLL 89
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter
MsbA, C-terminal domain {Salmonella typhimurium [TaxId:
90371]}
Length = 253
Score = 67.9 bits (166), Expect = 2e-13
Identities = 29/109 (26%), Positives = 51/109 (46%), Gaps = 3/109 (2%)
Query: 340 SKDIVNASG-IQLRGLTKIYKTGKK-AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 397
+ I A+G ++ R +T Y + A+ N+ L + + L+G +G+GKST S++T
Sbjct: 4 KRVIDRATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITR 63
Query: 398 LIIPTSGTAYIDGHDI-WYEMGKVRESLGLCPQYDLLFEELTVEDHLQF 445
G +DGHD+ Y + +R + L Q LF + +
Sbjct: 64 FYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYA 112
Score = 46.0 bits (109), Expect = 3e-06
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 284 LEGEVGFC-LTKIYKTGKK-AVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSK 341
G++ F +T Y + A+ N+ L + + L+G +G+GKST S++T + +
Sbjct: 10 ATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDE 69
Query: 342 DIVNASGIQLRGL 354
+ G LR
Sbjct: 70 GHILMDGHDLREY 82
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 46.9 bits (110), Expect = 8e-07
Identities = 6/67 (8%), Positives = 18/67 (26%)
Query: 379 VLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELT 438
++ G G GK+T + + + + + + + + +F
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKF 63
Query: 439 VEDHLQF 445
Sbjct: 64 FTSKKLV 70
Score = 31.5 bits (70), Expect = 0.13
Identities = 7/40 (17%), Positives = 14/40 (35%)
Query: 317 VLLGHNGAGKSTTMSMLTGYKRKSKDIVNASGIQLRGLTK 356
++ G G GK+T + + K ++ K
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKK 43
Score = 26.1 bits (56), Expect = 7.4
Identities = 3/70 (4%), Positives = 11/70 (15%)
Query: 44 IAGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAKWRITYS 103
I + + + + + + +F +
Sbjct: 20 IVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQY 79
Query: 104 SLLRNWTIAW 113
I
Sbjct: 80 FEELAIPILE 89
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 39.4 bits (90), Expect = 6e-04
Identities = 9/64 (14%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 354 LTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDI 413
L ++ ++ + ++ ++ I +++G NG+GKS+ + + + I +
Sbjct: 3 LERVTVKNFRSHSDTVVE-FKEGINLIIGQNGSGKSSLLDAILVGLYWPLRIKDIKKDEF 61
Query: 414 WYEM 417
Sbjct: 62 TKVG 65
Score = 35.1 bits (79), Expect = 0.016
Identities = 8/44 (18%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 292 LTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTG 335
L ++ ++ + ++ ++ I +++G NG+GKS+ + +
Sbjct: 3 LERVTVKNFRSHSDTVVE-FKEGINLIIGQNGSGKSSLLDAILV 45
>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli
[TaxId: 562]}
Length = 222
Score = 37.3 bits (85), Expect = 0.002
Identities = 24/180 (13%), Positives = 47/180 (26%), Gaps = 9/180 (5%)
Query: 292 LTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSML--------TGYKRKSKDI 343
+ T D+ +T L G NGAGKSTTM+ T ++
Sbjct: 4 FRSLTLINWNGFFARTFDL-DELVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTE 62
Query: 344 VNASGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTS 403
A+ L ++Q V+ +
Sbjct: 63 AGATSGSRDKGLHGKLKAGVCYSMLDTINSRHQRVVVGVRLQQVAGRDRKVDIKPFAIQG 122
Query: 404 GTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVEDHLQFFAKGKEFNGITYGRALLL 463
+ + E R++ L E + F +++ + + ++
Sbjct: 123 LPMSVQPTQLVTETLNERQARVLPLNELKDKLEAMEGVQFKQFNSITDYHSLMFDLGIIA 182
Score = 36.5 bits (83), Expect = 0.004
Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
Query: 352 RG-LTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDG 410
RG + T D+ +T L G NGAGKSTTM+ +IP +
Sbjct: 1 RGKFRSLTLINWNGFFARTFDL-DELVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRN 59
Query: 411 HD 412
Sbjct: 60 TT 61
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 31.9 bits (71), Expect = 0.11
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 315 ITVLLGHNGAGKSTTMSMLTGYKRKSKDIV 344
I V +G G+GK+T Y + +
Sbjct: 2 IVVFVGTAGSGKTTLTGEFGRYLEDNYKVA 31
Score = 29.2 bits (64), Expect = 0.92
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 377 ITVLLGHNGAGKSTTMSMLT 396
I V +G G+GK+T
Sbjct: 2 IVVFVGTAGSGKTTLTGEFG 21
>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 427
Score = 31.6 bits (70), Expect = 0.19
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 303 VDNLTLDMYQNQITVLLGHNGAGKST 328
+ ++ T ++G NG+GKS
Sbjct: 15 RGVTKVGFGESNFTSIIGPNGSGKSN 40
Score = 31.6 bits (70), Expect = 0.19
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 365 VDNLTLDMYQNQITVLLGHNGAGKST 390
+ ++ T ++G NG+GKS
Sbjct: 15 RGVTKVGFGESNFTSIIGPNGSGKSN 40
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 257
Score = 30.9 bits (69), Expect = 0.27
Identities = 7/22 (31%), Positives = 15/22 (68%)
Query: 317 VLLGHNGAGKSTTMSMLTGYKR 338
+++G G GKS+T++ + G +
Sbjct: 36 LVMGKGGVGKSSTVNSIIGERV 57
Score = 29.0 bits (64), Expect = 1.1
Identities = 7/19 (36%), Positives = 14/19 (73%)
Query: 379 VLLGHNGAGKSTTMSMLTG 397
+++G G GKS+T++ + G
Sbjct: 36 LVMGKGGVGKSSTVNSIIG 54
>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal
domain {Bacillus subtilis [TaxId: 1423]}
Length = 231
Score = 30.5 bits (68), Expect = 0.30
Identities = 20/129 (15%), Positives = 39/129 (30%), Gaps = 38/129 (29%)
Query: 309 DMYQNQITVLLGHNGAGKSTTMSMLTGY-KRKSKDIVNASGIQLRGLTKIYKTGKKAVDN 367
+Q++ TV G +G GKS+ ++ ++ ++ +I G
Sbjct: 93 PHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGR------------------ 134
Query: 368 LTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSG-----TAYIDGHDIWYEMGKVRE 422
G + + GL+ T G I+ ++ Y +RE
Sbjct: 135 --------------GKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEEEELGYTFPDIRE 180
Query: 423 SLGLCPQYD 431
C
Sbjct: 181 KSSSCKFRG 189
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens),
isoenzyme 6 [TaxId: 9606]}
Length = 173
Score = 30.3 bits (67), Expect = 0.31
Identities = 19/95 (20%), Positives = 28/95 (29%), Gaps = 6/95 (6%)
Query: 379 VLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELT 438
+L G G GK+T L G YI+ D+ E L + +
Sbjct: 8 LLTGTPGVGKTTLGKELASKS----GLKYINVGDLAREEQLYDGYDEEYDCPILDEDRVV 63
Query: 439 VEDHLQFFAKGKEFNGITYGRALLLMMSYVWVIYL 473
E Q G + +G + V L
Sbjct: 64 DELDNQMREGGVIVDY--HGCDFFPERWFHIVFVL 96
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium
discoideum, class-I myosin MyoE [TaxId: 44689]}
Length = 684
Score = 31.2 bits (70), Expect = 0.33
Identities = 9/42 (21%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 295 IYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGY 336
+Y A ++ +NQ ++ G +GAGK+ + +
Sbjct: 69 MYALANDAYRSM-RQSQENQCVIISGESGAGKTEASKKIMQF 109
Score = 30.0 bits (67), Expect = 0.76
Identities = 9/39 (23%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 357 IYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSML 395
+Y A ++ +NQ ++ G +GAGK+ +
Sbjct: 69 MYALANDAYRSM-RQSQENQCVIISGESGAGKTEASKKI 106
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain
{Dictyostelium discoideum [TaxId: 44689]}
Length = 712
Score = 30.8 bits (69), Expect = 0.41
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 295 IYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGY 336
I+ A ++ LD QNQ ++ G +GAGK+ + Y
Sbjct: 108 IFAISDVAYRSM-LDDRQNQSLLITGESGAGKTENTKKVIQY 148
Score = 29.3 bits (65), Expect = 1.1
Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 357 IYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDG 410
I+ A ++ LD QNQ ++ G +GAGK+ + + +G +G
Sbjct: 108 IFAISDVAYRSM-LDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANG 160
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken
(Gallus gallus), Va isoform [TaxId: 9031]}
Length = 730
Score = 30.9 bits (69), Expect = 0.41
Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 295 IYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGY 336
I+ ++A + +NQ ++ G +GAGK+ + Y
Sbjct: 77 IFAVAEEAYKQM-ARDERNQSIIVSGESGAGKTVSAKYAMRY 117
Score = 30.1 bits (67), Expect = 0.65
Identities = 15/70 (21%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
Query: 357 IYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDG-HDIWY 415
I+ ++A + +NQ ++ G +GAGK+ + SG+A +
Sbjct: 77 IFAVAEEAYKQM-ARDERNQSIIVSGESGAGKTVSAKYAMRYFATVSGSASEANVEEKVL 135
Query: 416 EMGKVRESLG 425
+ ES+G
Sbjct: 136 ASNPIMESIG 145
>g1ii8.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 369
Score = 30.6 bits (67), Expect = 0.42
Identities = 8/37 (21%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 292 LTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKST 328
L ++ ++ + ++ ++ I +++G NG+GKS+
Sbjct: 3 LERVTVKNFRSHSDTVVE-FKEGINLIIGQNGSGKSS 38
Score = 30.6 bits (67), Expect = 0.42
Identities = 8/37 (21%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 354 LTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKST 390
L ++ ++ + ++ ++ I +++G NG+GKS+
Sbjct: 3 LERVTVKNFRSHSDTVVE-FKEGINLIIGQNGSGKSS 38
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 29.9 bits (66), Expect = 0.48
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 313 NQITVLLGHNGAGKSTTMSML 333
N++ V+ G G G +T+ +
Sbjct: 1 NKVVVVTGVPGVGSTTSSQLA 21
Score = 29.9 bits (66), Expect = 0.48
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 375 NQITVLLGHNGAGKSTTMSML 395
N++ V+ G G G +T+ +
Sbjct: 1 NKVVVVTGVPGVGSTTSSQLA 21
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay
scallop (Aequipecten irradians) [TaxId: 31199]}
Length = 789
Score = 30.5 bits (68), Expect = 0.55
Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 295 IYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGY 336
++ A N+ + +NQ ++ G +GAGK+ + Y
Sbjct: 104 LFSVADNAYQNM-VTDRENQSCLITGESGAGKTENTKKVIMY 144
Score = 28.9 bits (64), Expect = 1.6
Identities = 9/39 (23%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 357 IYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSML 395
++ A N+ + +NQ ++ G +GAGK+ +
Sbjct: 104 LFSVADNAYQNM-VTDRENQSCLITGESGAGKTENTKKV 141
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major
[TaxId: 5664]}
Length = 174
Score = 29.6 bits (65), Expect = 0.60
Identities = 12/97 (12%), Positives = 29/97 (29%), Gaps = 5/97 (5%)
Query: 379 VLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLC--PQYDLLFEE 436
++ G G GK++ M+ + G +++ + E E + E+
Sbjct: 9 LITGTPGTGKTSMAEMIAAEL---DGFQHLEVGKLVKENHFYTEYDTELDTHIIEEKDED 65
Query: 437 LTVEDHLQFFAKGKEFNGITYGRALLLMMSYVWVIYL 473
++ + L + V+ L
Sbjct: 66 RLLDFMEPIMVSRGNHVVDYHSSELFPERWFHMVVVL 102
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 710
Score = 30.1 bits (67), Expect = 0.73
Identities = 30/134 (22%), Positives = 50/134 (37%), Gaps = 17/134 (12%)
Query: 295 IYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGY------KRKSKDIVNASG 348
IY A ++ L ++Q + G +GAGK+ + Y K K + +
Sbjct: 74 IYAIADTAYRSM-LQDREDQSILCTGESGAGKTENTKKVIQYLAVVASSHKGKKDTSITQ 132
Query: 349 IQLRGLTKIYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYI 408
++ K +A N L+ + N TV N S+ + +G YI
Sbjct: 133 GPSFSYGELEKQLLQA--NPILEAFGNAKTV-KNDN----SSRFGKFIRINFDVTG--YI 183
Query: 409 DGHDI-WYEMGKVR 421
G +I Y + K R
Sbjct: 184 VGANIETYLLEKSR 197
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 29.2 bits (64), Expect = 0.79
Identities = 5/23 (21%), Positives = 14/23 (60%)
Query: 317 VLLGHNGAGKSTTMSMLTGYKRK 339
++ G +GK++ +++LT +
Sbjct: 7 IIAGPQNSGKTSLLTLLTTDSVR 29
Score = 28.8 bits (63), Expect = 1.1
Identities = 5/19 (26%), Positives = 13/19 (68%)
Query: 379 VLLGHNGAGKSTTMSMLTG 397
++ G +GK++ +++LT
Sbjct: 7 IIAGPQNSGKTSLLTLLTT 25
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 794
Score = 29.7 bits (66), Expect = 0.89
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 295 IYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGY 336
I+ A + L +NQ ++ G +GAGK+ + Y
Sbjct: 106 IFSISDNAYQFM-LTDRENQSILITGESGAGKTVNTKRVIQY 146
Score = 28.9 bits (64), Expect = 1.8
Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 357 IYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSML 395
I+ A + L +NQ ++ G +GAGK+ +
Sbjct: 106 IFSISDNAYQFM-LTDRENQSILITGESGAGKTVNTKRV 143
>d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB),
core domain {Archaeon Pyrococcus woesei [TaxId: 2262]}
Length = 98
Score = 27.9 bits (62), Expect = 0.90
Identities = 7/44 (15%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 330 MSMLTGYKRKSKDIVNASGIQLRGLTKIYKTGKKAVDNLTLDMY 373
L R +I + + + + + + Y+ + + NLT
Sbjct: 55 ACRLLKVPRTLDEIADIARVDKKEIGRSYRFIARNL-NLTPKKL 97
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 29.5 bits (65), Expect = 0.92
Identities = 6/17 (35%), Positives = 12/17 (70%)
Query: 312 QNQITVLLGHNGAGKST 328
+ ++T++ H GAGK+
Sbjct: 8 KKRLTIMDLHPGAGKTK 24
Score = 29.5 bits (65), Expect = 0.92
Identities = 6/17 (35%), Positives = 12/17 (70%)
Query: 374 QNQITVLLGHNGAGKST 390
+ ++T++ H GAGK+
Sbjct: 8 KKRLTIMDLHPGAGKTK 24
>d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA,
nucleotide-binding domains {Mycobacterium tuberculosis
[TaxId: 1773]}
Length = 219
Score = 29.2 bits (65), Expect = 0.95
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 294 KIYKTGK---KAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSKDIVNA 346
IYKT + AV + + Y VL+G +S +S +R +++NA
Sbjct: 11 LIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNA 66
>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 195
Score = 28.8 bits (63), Expect = 1.0
Identities = 8/39 (20%), Positives = 14/39 (35%)
Query: 379 VLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEM 417
+LLG +GKST + + + +G
Sbjct: 6 LLLGAGESGKSTIVKQMKIIHEAGTGIVETHFTFKDLHF 44
>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum
[TaxId: 44689]}
Length = 306
Score = 29.0 bits (64), Expect = 1.1
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 379 VLLGHNGAGKSTTMSMLTGLIIPTSGT 405
V++G +GKS+ + + G G+
Sbjct: 28 VVVGSQSSGKSSVLENIVGRDFLPRGS 54
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 28.6 bits (62), Expect = 1.1
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 315 ITVLLGHNGAGKSTTMSMLTGYKR 338
++G GKST ++ L G K
Sbjct: 7 FVAIVGKPNVGKSTLLNNLLGVKV 30
Score = 27.4 bits (59), Expect = 3.0
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 377 ITVLLGHNGAGKSTTMSMLTG 397
++G GKST ++ L G
Sbjct: 7 FVAIVGKPNVGKSTLLNNLLG 27
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase
domain {Bacteriophage T7 [TaxId: 10760]}
Length = 277
Score = 28.8 bits (63), Expect = 1.1
Identities = 8/37 (21%), Positives = 18/37 (48%)
Query: 297 KTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSML 333
+G +++ TL ++ ++ +G GKST +
Sbjct: 19 FSGCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQ 55
Score = 28.8 bits (63), Expect = 1.1
Identities = 8/37 (21%), Positives = 18/37 (48%)
Query: 359 KTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSML 395
+G +++ TL ++ ++ +G GKST +
Sbjct: 19 FSGCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQ 55
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 28.5 bits (62), Expect = 1.2
Identities = 10/39 (25%), Positives = 15/39 (38%)
Query: 379 VLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEM 417
+ G + GKST + LTG + + I E
Sbjct: 4 IFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEW 42
Score = 27.4 bits (59), Expect = 3.2
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 317 VLLGHNGAGKSTTMSMLTGYK 337
+ G + GKST + LTG K
Sbjct: 4 IFAGRSNVGKSTLIYRLTGKK 24
>d1l8wa_ a.154.1.1 (A:) Variable surface antigen VlsE {Lyme disease
spirochete (Borrelia burgdorferi) [TaxId: 139]}
Length = 291
Score = 28.6 bits (64), Expect = 1.4
Identities = 27/106 (25%), Positives = 39/106 (36%), Gaps = 24/106 (22%)
Query: 297 KTGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSMLTGYKRKSKDIVNASGIQLRGLTK 356
+ GKK + +N I +G G KD A+ I LRG+
Sbjct: 193 QDGKKPEEA------KNPIAAAIGDKDGGAEFGQDE------MKKDDQIAAAIALRGMA- 239
Query: 357 IYKTGKKAVDNLTLDMYQNQITVLLGHNGAGKS---TTMSMLTGLI 399
K GK AV + + + I GA +S + +TGLI
Sbjct: 240 --KDGKFAVKDGEKEKAEGAI------KGAAESAVRKVLGAITGLI 277
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 28.1 bits (61), Expect = 1.4
Identities = 8/37 (21%), Positives = 14/37 (37%)
Query: 379 VLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY 415
++LG + AGK+T + G + T
Sbjct: 6 LMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLE 42
Score = 26.2 bits (56), Expect = 6.8
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 317 VLLGHNGAGKSTTMSMLTGYK 337
++LG + AGK+T + G
Sbjct: 6 LMLGLDNAGKTTILKKFNGED 26
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE
(MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 28.2 bits (61), Expect = 1.4
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 317 VLLGHNGAGKSTTMSMLTGYKRK 339
V+ G AGKS+ ++ L G +
Sbjct: 5 VIAGRPNAGKSSLLNALAGREAA 27
Score = 26.2 bits (56), Expect = 6.8
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 379 VLLGHNGAGKSTTMSMLTG 397
V+ G AGKS+ ++ L G
Sbjct: 5 VIAGRPNAGKSSLLNALAG 23
>g1xew.1 c.37.1.12 (X:,Y:) Smc head domain {Pyrococcus furiosus
[TaxId: 2261]}
Length = 329
Score = 28.8 bits (63), Expect = 1.5
Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 292 LTKIYKTGKKAVDNLTLDM-YQNQITVLLGHNGAGKST 328
+ K+ G K+ N + + + T ++G NG+GKS
Sbjct: 4 IEKLELKGFKSYGNKKVVIPFSKGFTAIVGANGSGKSN 41
Score = 28.8 bits (63), Expect = 1.5
Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 354 LTKIYKTGKKAVDNLTLDM-YQNQITVLLGHNGAGKST 390
+ K+ G K+ N + + + T ++G NG+GKS
Sbjct: 4 IEKLELKGFKSYGNKKVVIPFSKGFTAIVGANGSGKSN 41
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 28.4 bits (62), Expect = 1.6
Identities = 7/31 (22%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 315 ITVLLGHNGAGKSTTMSMLTGY-KRKSKDIV 344
I ++ G G GKST ++ + + +
Sbjct: 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNK 33
Score = 28.1 bits (61), Expect = 1.9
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 377 ITVLLGHNGAGKSTTMSML 395
I ++ G G GKST ++ +
Sbjct: 3 IGIVTGIPGVGKSTVLAKV 21
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain
{Bacillus subtilis [TaxId: 1423]}
Length = 185
Score = 28.4 bits (62), Expect = 1.6
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Query: 318 LLGHNGAGKSTTMSMLTGYKRKSKDIVNASGIQLR 352
L+G GKST +S+++ K K I + L
Sbjct: 6 LVGFPSVGKSTLLSVVSSAKPK---IADYHFTTLV 37
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 186
Score = 28.1 bits (61), Expect = 1.7
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 317 VLLGHNGAGKSTTMSMLTGYKR 338
++G GKST + + +R
Sbjct: 12 AIVGRPNVGKSTLFNAILNKER 33
Score = 26.6 bits (57), Expect = 6.1
Identities = 5/19 (26%), Positives = 9/19 (47%)
Query: 379 VLLGHNGAGKSTTMSMLTG 397
++G GKST + +
Sbjct: 12 AIVGRPNVGKSTLFNAILN 30
>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId:
2336]}
Length = 308
Score = 28.5 bits (62), Expect = 1.7
Identities = 16/95 (16%), Positives = 36/95 (37%), Gaps = 4/95 (4%)
Query: 303 VDNLTLDMYQNQITVLLGHNGAGKSTTM---SMLTGYKRKSKDIVNASGIQLRGLTKIYK 359
+ + +++T ++G NG+GKS + + G + K + + + ++
Sbjct: 15 GRPSLIG-FSDRVTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLP 73
Query: 360 TGKKAVDNLTLDMYQNQITVLLGHNGAGKSTTMSM 394
A L + +ITV G++T
Sbjct: 74 PAGSAYVELVFEENGEEITVARELKRTGENTYYLN 108
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis
[TaxId: 1423]}
Length = 195
Score = 28.2 bits (61), Expect = 1.7
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 317 VLLGHNGAGKSTTMSMLTGYKRKSKD 342
L G + GKS+ ++ L K ++
Sbjct: 27 ALAGRSNVGKSSFINSLINRKNLART 52
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 28.0 bits (61), Expect = 1.8
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 317 VLLGHNGAGKSTTMSMLTGYKR 338
V++G GKST ++ L R
Sbjct: 4 VIVGKPNVGKSTLLNRLLNEDR 25
Score = 26.1 bits (56), Expect = 7.0
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 379 VLLGHNGAGKSTTMSMLTG 397
V++G GKST ++ L
Sbjct: 4 VIVGKPNVGKSTLLNRLLN 22
>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 221
Score = 28.2 bits (62), Expect = 1.8
Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Query: 379 VLLGHNGAGKSTTMSML-TGLIIPTSG--TAYIDGHDIWYEMGKVRESLGLCPQY 430
+LLG +GKST + + ++ TSG + + M V ++
Sbjct: 10 LLLGAGESGKSTIVKQMRILHVVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKW 64
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 28.1 bits (61), Expect = 1.9
Identities = 15/76 (19%), Positives = 28/76 (36%), Gaps = 3/76 (3%)
Query: 375 NQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLF 434
++ ++ G G GKSTT L + +AYI+G I + + + L
Sbjct: 2 KKLYIITGPAGVGKSTTCKRLAAQL---DNSAYIEGDIINHMVVGGYRPPWESDELLALT 58
Query: 435 EELTVEDHLQFFAKGK 450
+ + + F
Sbjct: 59 WKNITDLTVNFLLAQN 74
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 27.8 bits (60), Expect = 2.1
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 315 ITVLLGHNGAGKSTTMSMLTGYKRK 339
++G GKST ++ L G K
Sbjct: 7 FIAIVGRPNVGKSTLLNKLLGQKIS 31
Score = 26.2 bits (56), Expect = 7.1
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 377 ITVLLGHNGAGKSTTMSMLTG 397
++G GKST ++ L G
Sbjct: 7 FIAIVGRPNVGKSTLLNKLLG 27
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 28.2 bits (62), Expect = 2.1
Identities = 7/31 (22%), Positives = 14/31 (45%)
Query: 317 VLLGHNGAGKSTTMSMLTGYKRKSKDIVNAS 347
+ G G+GKS+ ++ L G + +
Sbjct: 60 AVTGETGSGKSSFINTLRGIGNEEEGAAKTG 90
Score = 26.7 bits (58), Expect = 6.8
Identities = 15/75 (20%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Query: 327 STTMSMLTGYKRKSKDIVNA--SGIQLRGLTKIYKTGKKAVDNLTLDMYQNQITV-LLGH 383
S+ + K I + I+LR + A+ + ++ + + V + G
Sbjct: 5 SSFTGYFKKFNTGRKIISQEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGE 64
Query: 384 NGAGKSTTMSMLTGL 398
G+GKS+ ++ L G+
Sbjct: 65 TGSGKSSFINTLRGI 79
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain
{Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 27.7 bits (60), Expect = 2.2
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 318 LLGHNGAGKSTTMSMLTGYKRKSKD 342
L+G+ AGKS+ ++ +T K
Sbjct: 6 LVGYPNAGKSSLLAAMTRAHPKIAP 30
Score = 25.8 bits (55), Expect = 9.4
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 380 LLGHNGAGKSTTMSMLTG 397
L+G+ AGKS+ ++ +T
Sbjct: 6 LVGYPNAGKSSLLAAMTR 23
>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 299
Score = 28.3 bits (62), Expect = 2.2
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 379 VLLGHNGAGKSTTMSMLTGLIIPTSGT 405
++G AGKS+ + G G+
Sbjct: 30 AVVGGQSAGKSSVLENFVGRDFLPRGS 56
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 27.7 bits (60), Expect = 2.3
Identities = 7/44 (15%), Positives = 17/44 (38%)
Query: 376 QITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGK 419
+ L G G GK+T + + ++ + + + G+
Sbjct: 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGR 45
>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal
(G) domain {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 227
Score = 27.7 bits (60), Expect = 2.4
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 313 NQITVLLGHNGAGKSTTMSMLTGYKRKSKD 342
+ I +LGH GK+T + + G S++
Sbjct: 5 SPIVSVLGHVDHGKTTLLDHIRGSAVASRE 34
>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 27.6 bits (60), Expect = 2.8
Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Query: 379 VLLGHNGAGKSTTMSMLTGL---IIPTSGTAYIDGHDIWYEM 417
+LLG +GKST + + + +PT+G
Sbjct: 6 LLLGTGESGKSTFIKQMRIIHGSGVPTTGIIEYPFDLQSVIF 47
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 27.6 bits (60), Expect = 3.1
Identities = 10/86 (11%), Positives = 26/86 (30%), Gaps = 2/86 (2%)
Query: 359 KTGKKAVDNLTLD-MYQNQITVLLGHNGAGKST-TMSMLTGLIIPTSGTAYIDGHDIWYE 416
+G +D + +++ I + G G GK+ + + +
Sbjct: 9 SSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQ 68
Query: 417 MGKVRESLGLCPQYDLLFEELTVEDH 442
+ + S G+ + L +
Sbjct: 69 LLRNAYSWGMDFEEMERQNLLKIVCA 94
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 27.4 bits (59), Expect = 3.1
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 317 VLLGHNGAGKSTTMSMLTGYKR 338
+++G GKST + L K+
Sbjct: 4 LIVGRPNVGKSTLFNKLVKKKK 25
Score = 25.9 bits (55), Expect = 8.1
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 379 VLLGHNGAGKSTTMSMLTG 397
+++G GKST + L
Sbjct: 4 LIVGRPNVGKSTLFNKLVK 22
>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal
domain {Thermotoga maritima [TaxId: 2336]}
Length = 225
Score = 27.4 bits (60), Expect = 3.4
Identities = 6/25 (24%), Positives = 15/25 (60%)
Query: 312 QNQITVLLGHNGAGKSTTMSMLTGY 336
+ +I+ + G +G GKS+ ++ +
Sbjct: 94 KGKISTMAGLSGVGKSSLLNAINPG 118
Score = 27.0 bits (59), Expect = 4.0
Identities = 8/39 (20%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 374 QNQITVLLGHNGAGKSTTMSMLTG-LIIPTSGTAYIDGH 411
+ +I+ + G +G GKS+ ++ + L + S +
Sbjct: 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQR 132
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 27.0 bits (58), Expect = 3.9
Identities = 8/51 (15%), Positives = 17/51 (33%)
Query: 379 VLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQ 429
L+G +GK+T ++++ + + G V L
Sbjct: 6 TLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGG 56
Score = 25.8 bits (55), Expect = 9.5
Identities = 5/19 (26%), Positives = 12/19 (63%)
Query: 317 VLLGHNGAGKSTTMSMLTG 335
L+G +GK+T ++++
Sbjct: 6 TLVGLQYSGKTTFVNVIAS 24
>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 27.2 bits (59), Expect = 3.9
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Query: 379 VLLGHNGAGKSTTMSMLTGL--IIPTSGTAYIDGHDIWYEM 417
+LLG +GKST + + + PT G D
Sbjct: 6 LLLGAGESGKSTFLKQMRIIHGQDPTKGIHEYDFEIKNVPF 46
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 27.1 bits (58), Expect = 4.1
Identities = 17/150 (11%), Positives = 37/150 (24%)
Query: 317 VLLGHNGAGKSTTMSMLTGYKRKSKDIVNASGIQLRGLTKIYKTGKKAVDNLTLDMYQNQ 376
G + AGKS+ ++ LT K ++ QL L ++ + +
Sbjct: 20 AFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPE 79
Query: 377 ITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEE 436
G+ ++ + + +S ++
Sbjct: 80 EMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADK 139
Query: 437 LTVEDHLQFFAKGKEFNGITYGRALLLMMS 466
L +E G + S
Sbjct: 140 LASGARKAQLNMVREAVLAFNGDVQVETFS 169
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId:
562]}
Length = 171
Score = 26.9 bits (58), Expect = 4.2
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 312 QNQITVLLGHNGAGKSTTMSML 333
+ I VL+G +G+GKS S +
Sbjct: 5 DHHIYVLMGVSGSGKSAVASEV 26
Score = 26.9 bits (58), Expect = 4.2
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 374 QNQITVLLGHNGAGKSTTMSML 395
+ I VL+G +G+GKS S +
Sbjct: 5 DHHIYVLMGVSGSGKSAVASEV 26
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 26.6 bits (57), Expect = 5.2
Identities = 9/37 (24%), Positives = 16/37 (43%)
Query: 379 VLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWY 415
+ LG + AGK+T + ML + T + +
Sbjct: 4 LFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELA 40
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 182
Score = 26.4 bits (57), Expect = 5.4
Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
Query: 379 VLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELT 438
VL+G GAGK T I+ G +I D++ K LGL + + +L
Sbjct: 4 VLMGLPGAGKGT----QAEKIVAAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLV 59
Query: 439 VEDH 442
++
Sbjct: 60 PDEV 63
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 26.5 bits (57), Expect = 6.0
Identities = 4/19 (21%), Positives = 8/19 (42%)
Query: 317 VLLGHNGAGKSTTMSMLTG 335
+ +G +GK+ L
Sbjct: 4 LFVGLCDSGKTLLFVRLLT 22
Score = 26.5 bits (57), Expect = 6.0
Identities = 4/19 (21%), Positives = 8/19 (42%)
Query: 379 VLLGHNGAGKSTTMSMLTG 397
+ +G +GK+ L
Sbjct: 4 LFVGLCDSGKTLLFVRLLT 22
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic
domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Length = 258
Score = 26.2 bits (56), Expect = 7.9
Identities = 10/47 (21%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Query: 350 QLRGLTKIYKTGKKAVDNLTL-DMYQNQITVLLGHNGAGKSTTMSML 395
Q + K+ T +D++ + +T G G+GK+ M
Sbjct: 9 QRSTVWKL-STSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQS 54
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 26.1 bits (56), Expect = 8.0
Identities = 5/40 (12%), Positives = 15/40 (37%)
Query: 379 VLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMG 418
+++G + AGK+T + + + + +
Sbjct: 19 IIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINN 58
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 198
Score = 25.9 bits (55), Expect = 8.5
Identities = 10/72 (13%), Positives = 25/72 (34%)
Query: 382 GHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELTVED 441
G + +GK+T + L+ + + + D R G ++ + + VE
Sbjct: 29 GLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWFEYYYLQWDVEW 88
Query: 442 HLQFFAKGKEFN 453
+ + +
Sbjct: 89 LTHQLFRQLKAS 100
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain
{Bacteriophage T4 [TaxId: 10665]}
Length = 152
Score = 25.8 bits (55), Expect = 8.6
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
Query: 375 NQITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGK 419
+I + +G G+GKST I G I+ D +
Sbjct: 2 KKIILTIGCPGSGKSTWARE---FIAKNPGFYNINRDDYRQSIMA 43
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 136
Score = 25.6 bits (55), Expect = 8.7
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 312 QNQITVLLGHNGAGKST 328
Q+ L G+GKST
Sbjct: 7 SFQVAHLHAPTGSGKST 23
Score = 25.6 bits (55), Expect = 8.7
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 374 QNQITVLLGHNGAGKST 390
Q+ L G+GKST
Sbjct: 7 SFQVAHLHAPTGSGKST 23
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-2 [TaxId: 9913]}
Length = 190
Score = 26.1 bits (56), Expect = 9.3
Identities = 20/121 (16%), Positives = 37/121 (30%), Gaps = 4/121 (3%)
Query: 317 VLLGHNGAGKSTTMSMLTGYKRKSKDIVNASGIQLRGLTKIYKTGKKAVDNLTLDMYQNQ 376
VLLG GAGK T L K+ + + + + + T+D +
Sbjct: 7 VLLGPPGAGKGTQAPKLA----KNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLV 62
Query: 377 ITVLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEE 436
++ T G ++ + M K +E L ++ +
Sbjct: 63 SDEMVLELIEKNLETPPCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSL 122
Query: 437 L 437
L
Sbjct: 123 L 123
>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Sulfolobus solfataricus [TaxId:
2287]}
Length = 205
Score = 26.1 bits (56), Expect = 9.6
Identities = 13/73 (17%), Positives = 29/73 (39%), Gaps = 2/73 (2%)
Query: 379 VLLGHNGAGKSTTMSMLTGLIIPTSGTAYIDGHDIWYEMGKVRESLGLCPQYDLLFEELT 438
++GH GK+T + +TG+ TS + + ++G ++G+C +T
Sbjct: 12 GVVGHVDHGKTTLVQAITGIW--TSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVT 69
Query: 439 VEDHLQFFAKGKE 451
+ +
Sbjct: 70 EPSCKSCGSDDEP 82
>d1tf4a1 a.102.1.2 (A:1-460) Endo/exocellulase:cellobiose E-4,
N-terminal domain {Thermomonospora fusca [TaxId: 2021]}
Length = 460
Score = 26.1 bits (57), Expect = 9.8
Identities = 12/70 (17%), Positives = 16/70 (22%), Gaps = 6/70 (8%)
Query: 272 LPWYYPIQATYWLEGEVGFCLTKIYKTGKKAVDNLTL-DMYQNQITVLLGHNGAGKSTTM 330
+ A + F K V D QI LG N
Sbjct: 307 MAVLDTWGALRYA-ANTAFVALVYAKVIDDPVRKQRYHDFAVRQINYALGDNPRN----S 361
Query: 331 SMLTGYKRKS 340
S + G+
Sbjct: 362 SYVVGFGNNP 371
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.137 0.424
Gapped
Lambda K H
0.267 0.0435 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,832,721
Number of extensions: 87823
Number of successful extensions: 623
Number of sequences better than 10.0: 1
Number of HSP's gapped: 610
Number of HSP's successfully gapped: 183
Length of query: 474
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 385
Effective length of database: 1,185,626
Effective search space: 456466010
Effective search space used: 456466010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.7 bits)