BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7414
(320 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CMQ|A Chain A, Crystal Structure Of Human Mitochondrial Phenylalanine
Trna Synthetase
pdb|3HFV|A Chain A, Crystal Structure Of Human Mitochondrial Phenylalanyl-Trna
Synthetase Complexed With M-Tyrosine
pdb|3TEG|A Chain A, Bacterial And Eukaryotic Phenylalanyl-Trna Synthetases
Catalyze Misaminoacylation Of Trnaphe With
3,4-Dihydroxy-L-Phenylalanine (L- Dopa)
pdb|3TUP|A Chain A, Crystal Structure Of Human Mitochondrial Phers Complexed
With Trnaphe In The Active Open State
Length = 415
Score = 265 bits (678), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 124/284 (43%), Positives = 192/284 (67%), Gaps = 32/284 (11%)
Query: 36 ATLTINGKTYHTDDYTNVTPKILSYLNKNLHNKKYHPLCMLKQRIINFFYSEFVGKKGTP 95
+ + + GK+Y DD++N+T K+L+ + +NLHN+++HPL ++K+R+ FY ++VG+ GTP
Sbjct: 13 SVVELLGKSYPQDDHSNLTRKVLTRVGRNLHNQQHHPLWLIKERVKEHFYKQYVGRFGTP 72
Query: 96 IFSIYDSISPVVTVEENFDSLLVAKDHVSRSKNDCYYVNREYLLRAHTTAHQSELIRMGL 155
+FS+YD++SPVVT +NFDSLL+ DH SR K D YY+NR ++LRAHT+AHQ +L+ GL
Sbjct: 73 LFSVYDNLSPVVTTWQNFDSLLIPADHPSRKKGDNYYLNRTHMLRAHTSAHQWDLLHAGL 132
Query: 156 DNFVVFGDVYRRDQIDSTHFPVFHQADGVHLLNRDQVSRGDIGVGTSLKIMTIFTPTSQE 215
D F+V GDVYRRDQIDS H+P+FHQ + V L ++ ++ G
Sbjct: 133 DAFLVVGDVYRRDQIDSQHYPIFHQLEAVRLFSKHELFAG-------------------- 172
Query: 216 YFYIKKCNKISESIGQNIVIFEQGGVHTDEKQARHTLDATKVMEQKLKNSLVKLAKILFG 275
IK G+++ +FEQ + KQ HT++A K++E LK +L +L LFG
Sbjct: 173 ---IKD--------GESLQLFEQSS-RSAHKQETHTMEAVKLVEFDLKQTLTRLMAHLFG 220
Query: 276 DDIQMRWISEYFPFTHPSWELEILLNDKWVEILGCGVIRHEILD 319
D++++RW+ YFPFTHPS+E+EI + +W+E+LGCGV+ ++++
Sbjct: 221 DELEIRWVDCYFPFTHPSFEMEINFHGEWLEVLGCGVMEQQLVN 264
>pdb|3PCO|A Chain A, Crystal Structure Of E. Coli Phenylalanine-Trna Synthetase
Complexed With Phenylalanine And Amp
pdb|3PCO|C Chain C, Crystal Structure Of E. Coli Phenylalanine-Trna Synthetase
Complexed With Phenylalanine And Amp
Length = 327
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 262 LKNSLVKLAKILFGDDIQMRWISEYFPFTHPSWELEIL-LNDKWVEILGCGVIRHEIL 318
LK +L + F +D+Q+R+ YFPFT PS E++++ N KW+E+LGCG++ +L
Sbjct: 223 LKGTLHDFLRNFFEEDLQIRFRPSYFPFTEPSAEVDVMGKNGKWLEVLGCGMVHPNVL 280
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 63/130 (48%), Gaps = 14/130 (10%)
Query: 58 LSYLNKNLHNKKYHPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVE-ENFDSL 116
+S + + N HP+ RI +FF G+ G F++ + P + + NFD+L
Sbjct: 94 VSLPGRRIENGGLHPVTRTIDRIESFF-----GELG---FTV--ATGPEIEDDYHNFDAL 143
Query: 117 LVAKDHVSRSKNDCYYVNREYLLRAHTTAHQSELIRMGLD--NFVVFGDVYRRDQIDSTH 174
+ H +R+ +D ++ + LLR T+ Q ++ + G VYR D D TH
Sbjct: 144 NIPGHHPARADHDTFWFDTTRLLRTQTSGVQIRTMKAQQPPIRIIAPGRVYRND-YDQTH 202
Query: 175 FPVFHQADGV 184
P+FHQ +G+
Sbjct: 203 TPMFHQMEGL 212
>pdb|2RHQ|A Chain A, Phers From Staphylococcus Haemolyticus- Rational Protein
Engineering And Inhibitor Studies
pdb|2RHS|A Chain A, Phers From Staphylococcus Haemolyticus- Rational Protein
Engineering And Inhibitor Studies
pdb|2RHS|C Chain C, Phers From Staphylococcus Haemolyticus- Rational Protein
Engineering And Inhibitor Studies
Length = 294
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 112 NFDSLLVAKDHVSRSKNDCYYVNREYLLRAHTTAHQSELIR----MGLDNFVVFGDVYRR 167
NF++L + K H +R D +Y+ E L+R HT+ Q+ + G + G VYRR
Sbjct: 85 NFEALNLPKSHPARDMQDSFYITDEILMRTHTSPVQARTMEKRNGQGPVKIICPGKVYRR 144
Query: 168 DQIDSTHFPVFHQADGV 184
D D+TH F Q +G+
Sbjct: 145 DSDDATHSHQFTQIEGL 161
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 12/70 (17%)
Query: 262 LKNSLVKLAKILFGDDIQMRWISEYFPFTHPSWELEILL------------NDKWVEILG 309
LK +L +AK LFG D ++R YFPFT PS E+++ + W+EILG
Sbjct: 172 LKGTLELVAKKLFGADREIRLRPSYFPFTEPSVEVDVSCFKCKGKGCNVCKHTGWIEILG 231
Query: 310 CGVIRHEILD 319
G++ +L+
Sbjct: 232 AGMVHPNVLE 241
>pdb|1PYS|A Chain A, Phenylalanyl-Trna Synthetase From Thermus Thermophilus
pdb|1B7Y|A Chain A, Phenylalanyl Trna Synthetase Complexed With
Phenylalaninyl-Adenylate
pdb|1EIY|A Chain A, The Crystal Structure Of Phenylalanyl-Trna Synthetase From
Thermus Thermophilus Complexed With Cognate Trnaphe
pdb|1B70|A Chain A, Phenylalanyl Trna Synthetase Complexed With Phenylalanine
pdb|1JJC|A Chain A, Crystal Structure At 2.6a Resolution Of Phenylalanyl-trna
Synthetase Complexed With Phenylalanyl-adenylate In The
Presence Of Manganese
pdb|2IY5|A Chain A, Phenylalanyl-Trna Synthetase From Thermus Thermophilus
Complexed With Trna And A Phenylalanyl-Adenylate Analog
pdb|3HFZ|A Chain A, Crystal Structure Of Thermus Thermophilus
Phenylalanyl-Trna Synthetase Comlexed With M-Tyrosine
pdb|3TEH|A Chain A, Crystal Structure Of Thermus Thermophilus
Phenylalanyl-Trna Synthetase Comlexed With L-Dopa
Length = 350
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 67/146 (45%), Gaps = 30/146 (20%)
Query: 58 LSYLNKNLHNKKYHPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSI-SPVVTVEE-NFDS 115
+S +L + HP+ ++++ ++ F + +G Y ++ P V E NFD+
Sbjct: 88 VSLPGASLFSGGLHPITLMERELVEIFRA--LG---------YQAVEGPEVESEFFNFDA 136
Query: 116 LLVAKDHVSRSKNDCYYVNRE---------------YLLRAHTTAHQSELIRMGLDNF-- 158
L + + H +R D +++ E LLR HT+ Q + F
Sbjct: 137 LNIPEHHPARDMWDTFWLTGEGFRLEGPLGEEVEGRLLLRTHTSPMQVRYMVAHTPPFRI 196
Query: 159 VVFGDVYRRDQIDSTHFPVFHQADGV 184
VV G V+R +Q D+TH VFHQ +G+
Sbjct: 197 VVPGRVFRFEQTDATHEAVFHQLEGL 222
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 262 LKNSLVKLAKILFGDDIQMRWISEYFPFTHPSWELEILLND--KWVEILGCGVIRHEILD 319
LK ++ +LA+ LFG D ++R+ YFPF P + + + KW+E+ G G++ ++
Sbjct: 233 LKGAIYELAQALFGPDSKVRFQPVYFPFVEPGAQFAVWWPEGGKWLELGGAGMVHPKVFQ 292
>pdb|2AKW|A Chain A, Crystal Structure Of T.thermophilus Phenylalanyl-trna
Synthetase Complexed With P-cl-phenylalanine
pdb|2ALY|A Chain A, Crystal Structure Of T.Thermophilus Phenylalanyl-Trna
Synthetase Complexed With
5'-O-[n-(L-Tyrosyl)sulphamoyl]adenosine
pdb|2AMC|A Chain A, Crystal Structure Of Phenylalanyl-Trna Synthetase
Complexed With L- Tyrosine
Length = 266
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 67/146 (45%), Gaps = 30/146 (20%)
Query: 58 LSYLNKNLHNKKYHPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSI-SPVVTVEE-NFDS 115
+S +L + HP+ ++++ ++ F + +G Y ++ P V E NFD+
Sbjct: 4 VSLPGASLFSGGLHPITLMERELVEIFRA--LG---------YQAVEGPEVESEFFNFDA 52
Query: 116 LLVAKDHVSRSKNDCYYVNRE---------------YLLRAHTTAHQSELIRMGLDNF-- 158
L + + H +R D +++ E LLR HT+ Q + F
Sbjct: 53 LNIPEHHPARDMWDTFWLTGEGFRLEGPLGEEVEGRLLLRTHTSPMQVRYMVAHTPPFRI 112
Query: 159 VVFGDVYRRDQIDSTHFPVFHQADGV 184
VV G V+R +Q D+TH VFHQ +G+
Sbjct: 113 VVPGRVFRFEQTDATHEAVFHQLEGL 138
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 6/76 (7%)
Query: 250 HTLDATKVME----QKLKNSLVKLAKILFGDDIQMRWISEYFPFTHPSWELEILLND--K 303
H L+ V E LK ++ +LA+ LFG D ++R+ YFPF P + + + K
Sbjct: 133 HQLEGLVVGEGIAMAHLKGAIYELAQALFGPDSKVRFQPVYFPFVEPGAQFAVWWPEGGK 192
Query: 304 WVEILGCGVIRHEILD 319
W+E+ G G++ ++
Sbjct: 193 WLELGGAGMVHPKVFQ 208
>pdb|1OLT|A Chain A, Coproporphyrinogen Iii Oxidase (Hemn) From Escherichia
Coli Is A Radical Sam Enzyme
Length = 457
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 48/111 (43%), Gaps = 13/111 (11%)
Query: 117 LVAKDHVSRSKNDCYYVNREYLL----RAHTTAHQSELIRMGLDNFVVFGDVYRRDQIDS 172
+ DH +R ++ RE +L + +TT ++L+ MG+ + GD Y ++Q +
Sbjct: 284 FIGMDHFARPDDELAVAQREGVLHRNFQGYTTQGDTDLLGMGVSAISMIGDCYAQNQKEL 343
Query: 173 THFPVFHQAD--GVHL-----LNRDQVSRGDIGVGTSLKIMTIFTPTSQEY 216
+ + Q D G L L RD R D+ ++P Q++
Sbjct: 344 KQY--YQQVDEQGNALWRGIALTRDDCIRRDVIKSLICNFRLDYSPIEQQW 392
>pdb|3L4G|A Chain A, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|C Chain C, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|E Chain E, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|G Chain G, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|I Chain I, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|K Chain K, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|M Chain M, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
pdb|3L4G|O Chain O, Crystal Structure Of Homo Sapiens Cytoplasmic
Phenylalanyl-T Synthetase
Length = 508
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 43/119 (36%), Gaps = 46/119 (38%)
Query: 112 NFDSLLVAKDHVSRSKNDCYYVN------------------------------------- 134
NFD+L + H +R ++D +++
Sbjct: 258 NFDALFQPQQHPARDQHDTFFLRDPAEALQLPMDYVQRVKRTHSQGGYGSQGYKYNWKLD 317
Query: 135 --REYLLRAHTT-AHQSELIRMGLDN------FVVFGDVYRRDQIDSTHFPVFHQADGV 184
R+ LLR HTT A L R+ + V+R + +D+TH FHQ +GV
Sbjct: 318 EARKNLLRTHTTSASARALYRLAQKKPFTPVKYFSIDRVFRNETLDATHLAEFHQIEGV 376
Score = 31.2 bits (69), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 279 QMRWISEYFPFTHPSWELEILLND--KWVEILGCGVIRHEIL 318
Q+R+ Y P+T PS E+ KWVE+ GV R E+L
Sbjct: 402 QLRFKPAYNPYTEPSMEVFSYHQGLKKWVEVGNSGVFRPEML 443
>pdb|3GOK|A Chain A, Binding Site Mapping Of Protein Ligands
pdb|3GOK|B Chain B, Binding Site Mapping Of Protein Ligands
pdb|3GOK|C Chain C, Binding Site Mapping Of Protein Ligands
pdb|3GOK|D Chain D, Binding Site Mapping Of Protein Ligands
pdb|3GOK|E Chain E, Binding Site Mapping Of Protein Ligands
pdb|3GOK|F Chain F, Binding Site Mapping Of Protein Ligands
pdb|3GOK|G Chain G, Binding Site Mapping Of Protein Ligands
pdb|3GOK|H Chain H, Binding Site Mapping Of Protein Ligands
pdb|3GOK|I Chain I, Binding Site Mapping Of Protein Ligands
pdb|3GOK|J Chain J, Binding Site Mapping Of Protein Ligands
pdb|3GOK|K Chain K, Binding Site Mapping Of Protein Ligands
pdb|3GOK|L Chain L, Binding Site Mapping Of Protein Ligands
Length = 334
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Query: 170 IDSTHFPVFHQADGVHL-----LNRDQVSRGDIGVGTSLKIMTIFTPTSQEYFYIK 220
+ S FP FH G+ + ++ +V+ +G+G + K++ IF +QE F +K
Sbjct: 8 MGSQQFPQFHVKSGLQIKKNAIIDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALK 63
>pdb|2JBO|A Chain A, Protein Kinase Mk2 In Complex With An Inhibitor (Crystal
Form-1, Soaking)
pdb|2JBP|A Chain A, Protein Kinase Mk2 In Complex With An Inhibitor (crystal
Form-2, Co-crystallization)
pdb|2JBP|B Chain B, Protein Kinase Mk2 In Complex With An Inhibitor (crystal
Form-2, Co-crystallization)
pdb|2JBP|C Chain C, Protein Kinase Mk2 In Complex With An Inhibitor (crystal
Form-2, Co-crystallization)
pdb|2JBP|D Chain D, Protein Kinase Mk2 In Complex With An Inhibitor (crystal
Form-2, Co-crystallization)
pdb|2JBP|E Chain E, Protein Kinase Mk2 In Complex With An Inhibitor (crystal
Form-2, Co-crystallization)
pdb|2JBP|F Chain F, Protein Kinase Mk2 In Complex With An Inhibitor (crystal
Form-2, Co-crystallization)
pdb|2JBP|G Chain G, Protein Kinase Mk2 In Complex With An Inhibitor (crystal
Form-2, Co-crystallization)
pdb|2JBP|H Chain H, Protein Kinase Mk2 In Complex With An Inhibitor (crystal
Form-2, Co-crystallization)
pdb|2JBP|I Chain I, Protein Kinase Mk2 In Complex With An Inhibitor (crystal
Form-2, Co-crystallization)
pdb|2JBP|J Chain J, Protein Kinase Mk2 In Complex With An Inhibitor (crystal
Form-2, Co-crystallization)
pdb|2JBP|K Chain K, Protein Kinase Mk2 In Complex With An Inhibitor (crystal
Form-2, Co-crystallization)
pdb|2JBP|L Chain L, Protein Kinase Mk2 In Complex With An Inhibitor (crystal
Form-2, Co-crystallization)
Length = 326
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Query: 172 STHFPVFHQADGVHL-----LNRDQVSRGDIGVGTSLKIMTIFTPTSQEYFYIK 220
S FP FH G+ + ++ +V+ +G+G + K++ IF +QE F +K
Sbjct: 2 SQQFPQFHVKSGLQIKKNAIIDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALK 55
>pdb|3FPM|A Chain A, Crystal Structure Of A Squarate Inhibitor Bound To Mapkap
Kinase-2
Length = 325
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 174 HFPVFHQADGVHL-----LNRDQVSRGDIGVGTSLKIMTIFTPTSQEYFYIK 220
FP FH G+ + ++ +V+ +G+G + K++ IF +QE F +K
Sbjct: 3 QFPQFHVKSGLQIKKNAIIDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALK 54
>pdb|2PZY|A Chain A, Structure Of Mk2 Complexed With Compound 76
pdb|2PZY|B Chain B, Structure Of Mk2 Complexed With Compound 76
pdb|2PZY|C Chain C, Structure Of Mk2 Complexed With Compound 76
pdb|2PZY|D Chain D, Structure Of Mk2 Complexed With Compound 76
pdb|3KC3|A Chain A, Mk2 Complexed To Inhibitor
N4-(7-(Benzofuran-2-Yl)-1h-Indazol-5-Yl)
Pyrimidine-2,4-Diamine
pdb|3KC3|B Chain B, Mk2 Complexed To Inhibitor
N4-(7-(Benzofuran-2-Yl)-1h-Indazol-5-Yl)
Pyrimidine-2,4-Diamine
pdb|3KC3|C Chain C, Mk2 Complexed To Inhibitor
N4-(7-(Benzofuran-2-Yl)-1h-Indazol-5-Yl)
Pyrimidine-2,4-Diamine
pdb|3KC3|D Chain D, Mk2 Complexed To Inhibitor
N4-(7-(Benzofuran-2-Yl)-1h-Indazol-5-Yl)
Pyrimidine-2,4-Diamine
pdb|3KC3|E Chain E, Mk2 Complexed To Inhibitor
N4-(7-(Benzofuran-2-Yl)-1h-Indazol-5-Yl)
Pyrimidine-2,4-Diamine
pdb|3KC3|F Chain F, Mk2 Complexed To Inhibitor
N4-(7-(Benzofuran-2-Yl)-1h-Indazol-5-Yl)
Pyrimidine-2,4-Diamine
pdb|3KC3|G Chain G, Mk2 Complexed To Inhibitor
N4-(7-(Benzofuran-2-Yl)-1h-Indazol-5-Yl)
Pyrimidine-2,4-Diamine
pdb|3KC3|H Chain H, Mk2 Complexed To Inhibitor
N4-(7-(Benzofuran-2-Yl)-1h-Indazol-5-Yl)
Pyrimidine-2,4-Diamine
pdb|3KC3|I Chain I, Mk2 Complexed To Inhibitor
N4-(7-(Benzofuran-2-Yl)-1h-Indazol-5-Yl)
Pyrimidine-2,4-Diamine
pdb|3KC3|J Chain J, Mk2 Complexed To Inhibitor
N4-(7-(Benzofuran-2-Yl)-1h-Indazol-5-Yl)
Pyrimidine-2,4-Diamine
pdb|3KC3|K Chain K, Mk2 Complexed To Inhibitor
N4-(7-(Benzofuran-2-Yl)-1h-Indazol-5-Yl)
Pyrimidine-2,4-Diamine
pdb|3KC3|L Chain L, Mk2 Complexed To Inhibitor
N4-(7-(Benzofuran-2-Yl)-1h-Indazol-5-Yl)
Pyrimidine-2,4-Diamine
pdb|3A2C|A Chain A, Crystal Structure Of A Pyrazolopyrimidine Inhibitor
Complex Mapkap Kinase-2 (Mk2)
pdb|3A2C|B Chain B, Crystal Structure Of A Pyrazolopyrimidine Inhibitor
Complex Mapkap Kinase-2 (Mk2)
pdb|3A2C|C Chain C, Crystal Structure Of A Pyrazolopyrimidine Inhibitor
Complex Mapkap Kinase-2 (Mk2)
pdb|3A2C|D Chain D, Crystal Structure Of A Pyrazolopyrimidine Inhibitor
Complex Mapkap Kinase-2 (Mk2)
pdb|3A2C|E Chain E, Crystal Structure Of A Pyrazolopyrimidine Inhibitor
Complex Mapkap Kinase-2 (Mk2)
pdb|3A2C|F Chain F, Crystal Structure Of A Pyrazolopyrimidine Inhibitor
Complex Mapkap Kinase-2 (Mk2)
pdb|3A2C|G Chain G, Crystal Structure Of A Pyrazolopyrimidine Inhibitor
Complex Mapkap Kinase-2 (Mk2)
pdb|3A2C|H Chain H, Crystal Structure Of A Pyrazolopyrimidine Inhibitor
Complex Mapkap Kinase-2 (Mk2)
pdb|3A2C|I Chain I, Crystal Structure Of A Pyrazolopyrimidine Inhibitor
Complex Mapkap Kinase-2 (Mk2)
pdb|3A2C|J Chain J, Crystal Structure Of A Pyrazolopyrimidine Inhibitor
Complex Mapkap Kinase-2 (Mk2)
pdb|3A2C|K Chain K, Crystal Structure Of A Pyrazolopyrimidine Inhibitor
Complex Mapkap Kinase-2 (Mk2)
pdb|3A2C|L Chain L, Crystal Structure Of A Pyrazolopyrimidine Inhibitor
Complex Mapkap Kinase-2 (Mk2)
Length = 324
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 174 HFPVFHQADGVHL-----LNRDQVSRGDIGVGTSLKIMTIFTPTSQEYFYIK 220
FP FH G+ + ++ +V+ +G+G + K++ IF +QE F +K
Sbjct: 2 QFPQFHVKSGLQIKKNAIIDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALK 53
>pdb|2XPI|A Chain A, Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1
pdb|2XPI|D Chain D, Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1
Length = 597
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 106 VVTVEENFDSLLVAKDHVSRSKNDCYYVNREYLLRAHTTAHQSELIR 152
++T +E +D L++ ++ + SK D ++ Y+L+ + T+H+ EL R
Sbjct: 245 LLTADEEWD-LVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRR 290
>pdb|2P1I|A Chain A, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
pdb|2P1I|B Chain B, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
pdb|2P1I|C Chain C, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
pdb|2P1I|D Chain D, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
pdb|2P1I|E Chain E, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
pdb|2P1I|F Chain F, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
pdb|2P1I|G Chain G, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
pdb|2P1I|H Chain H, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2
(Py03671)
Length = 349
Score = 27.7 bits (60), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 52/118 (44%), Gaps = 20/118 (16%)
Query: 208 IFTPTSQEYFYIKKCNKISESIGQNIVIFEQGGVHTDEKQARHTLDATKVMEQKLKNSLV 267
+F+ + F+ KK NK+ N +I G+HTD ++L K+ E ++N +
Sbjct: 195 LFSGSFCAIFWFKKQNKLHGLTFSNELISRDEGLHTDFNCLIYSLLENKLPENVVQNIVK 254
Query: 268 KLAKI--------LFGDDIQM--RWISEYFPFTHPSWELEILLNDKWVEILGCGVIRH 315
+ ++ L D I M R +S+Y F + D+ +E LGC + H
Sbjct: 255 EAVEVERSFICESLPCDLIGMNSRLMSQYIEF----------VADRLLECLGCSKVFH 302
>pdb|1XDO|A Chain A, Crystal Structure Of Escherichia Coli Polyphosphate Kinase
pdb|1XDO|B Chain B, Crystal Structure Of Escherichia Coli Polyphosphate Kinase
pdb|1XDP|A Chain A, Crystal Structure Of The E.Coli Polyphosphate Kinase In
Complex With Amppnp
pdb|1XDP|B Chain B, Crystal Structure Of The E.Coli Polyphosphate Kinase In
Complex With Amppnp
Length = 687
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 15/65 (23%)
Query: 233 IVIFEQGGVHTDEKQARHTLD------------ATKVMEQKLKNSLVKLAKILFGDDIQM 280
+ IFE GG D+K + D AT +++ +LK ++ + ILF D ++
Sbjct: 594 VYIFENGG---DKKVYLSSADWMTRNIDYRIEVATPLLDPRLKQRVLDIIDILFSDTVKA 650
Query: 281 RWISE 285
R+I +
Sbjct: 651 RYIDK 655
>pdb|1IMV|A Chain A, 2.85 A Crystal Structure Of Pedf
Length = 398
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 36/80 (45%)
Query: 78 QRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSKNDCYYVNREY 137
Q I N+ ++ GK I D IS ++ +F V K ++ + +Y++ E
Sbjct: 158 QEINNWVQAQMKGKLARSTKEIPDEISILLLGVAHFKGQWVTKFDSRKTSLEDFYLDEER 217
Query: 138 LLRAHTTAHQSELIRMGLDN 157
+R + ++R GLD+
Sbjct: 218 TVRVPMMSDPKAVLRYGLDS 237
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,763,374
Number of Sequences: 62578
Number of extensions: 402783
Number of successful extensions: 925
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 906
Number of HSP's gapped (non-prelim): 27
length of query: 320
length of database: 14,973,337
effective HSP length: 99
effective length of query: 221
effective length of database: 8,778,115
effective search space: 1939963415
effective search space used: 1939963415
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)