BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7414
(320 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O16129|SYFM_DROME Probable phenylalanine--tRNA ligase, mitochondrial OS=Drosophila
melanogaster GN=Aats-phe PE=2 SV=3
Length = 453
Score = 310 bits (793), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 149/309 (48%), Positives = 202/309 (65%), Gaps = 19/309 (6%)
Query: 12 SRHTSCYLNLLRFSTHAVKNDVEKATLTINGKTYHTDDYTNVTPKILSYLNKNLHNKKYH 71
+RH L S K+ L ++G TY TD +TNVTPKILSY+ N H + H
Sbjct: 10 ARHWLKSTRCLASSAAPAKSPSSPPQLEVSGSTYATDGWTNVTPKILSYVGANKHLQTDH 69
Query: 72 PLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSKNDCY 131
PL +++QRI+N+FY + ++G P+FS+YD ++PVVTV++NFD+LL+ DHVSR K+DCY
Sbjct: 70 PLSIIRQRIVNYFYGAYRNQRGNPLFSVYDQMNPVVTVQQNFDNLLIPADHVSRQKSDCY 129
Query: 132 YVNREYLLRAHTTAHQSELIRMGLDNFVVFGDVYRRDQIDSTHFPVFHQADGVHLLNRDQ 191
Y+N+++LLRAHTTAHQ ELI GLDNF+V G+VYRRD+IDSTH+PVFHQAD V L+ +D+
Sbjct: 130 YINQQHLLRAHTTAHQVELISGGLDNFLVVGEVYRRDEIDSTHYPVFHQADAVRLVTKDK 189
Query: 192 VSRGDIGVGTSLKIMTIFTPTSQEYFYIKKCNKISESIGQNIVIFEQGGVHTDEKQARHT 251
+ + G + +F T S ++ +I KQ HT
Sbjct: 190 LFERNPG-------LELFEET------------WSGTLADPKLILPSSKFMDQTKQPCHT 230
Query: 252 LDATKVMEQKLKNSLVKLAKILFGDDIQMRWISEYFPFTHPSWELEILLNDKWVEILGCG 311
L+A K+ME ++K+ LV L K LFG I+ RW+ YFPFT PSWELEI D W+E+LGCG
Sbjct: 231 LEAVKLMEHEMKHVLVGLTKDLFGPRIKYRWVDTYFPFTQPSWELEIYFKDNWLEVLGCG 290
Query: 312 VIRHEILDR 320
++RHEIL R
Sbjct: 291 IMRHEILQR 299
>sp|O95363|SYFM_HUMAN Phenylalanine--tRNA ligase, mitochondrial OS=Homo sapiens GN=FARS2
PE=1 SV=1
Length = 451
Score = 266 bits (680), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 124/278 (44%), Positives = 189/278 (67%), Gaps = 32/278 (11%)
Query: 42 GKTYHTDDYTNVTPKILSYLNKNLHNKKYHPLCMLKQRIINFFYSEFVGKKGTPIFSIYD 101
GK+Y DD++N+T K+L+ + +NLHN+++HPL ++K+R+ FY ++VG+ GTP+FS+YD
Sbjct: 55 GKSYPQDDHSNLTRKVLTRVGRNLHNQQHHPLWLIKERVKEHFYKQYVGRFGTPLFSVYD 114
Query: 102 SISPVVTVEENFDSLLVAKDHVSRSKNDCYYVNREYLLRAHTTAHQSELIRMGLDNFVVF 161
++SPVVT +NFDSLL+ DH SR K D YY+NR ++LRAHT+AHQ +L+ GLD F+V
Sbjct: 115 NLSPVVTTWQNFDSLLIPADHPSRKKGDNYYLNRTHMLRAHTSAHQWDLLHAGLDAFLVV 174
Query: 162 GDVYRRDQIDSTHFPVFHQADGVHLLNRDQVSRGDIGVGTSLKIMTIFTPTSQEYFYIKK 221
GDVYRRDQIDS H+P+FHQ + V L ++ ++ G IK
Sbjct: 175 GDVYRRDQIDSQHYPIFHQLEAVRLFSKHELFAG-----------------------IKD 211
Query: 222 CNKISESIGQNIVIFEQGGVHTDEKQARHTLDATKVMEQKLKNSLVKLAKILFGDDIQMR 281
G+++ +FEQ + KQ HT++A K++E LK +L +L LFGD++++R
Sbjct: 212 --------GESLQLFEQSS-RSAHKQETHTMEAVKLVEFDLKQTLTRLMAHLFGDELEIR 262
Query: 282 WISEYFPFTHPSWELEILLNDKWVEILGCGVIRHEILD 319
W+ YFPFTHPS+E+EI + +W+E+LGCGV+ ++++
Sbjct: 263 WVDCYFPFTHPSFEMEINFHGEWLEVLGCGVMEQQLVN 300
>sp|Q6AYQ3|SYFM_RAT Phenylalanine--tRNA ligase, mitochondrial OS=Rattus norvegicus
GN=Fars2 PE=2 SV=1
Length = 472
Score = 264 bits (674), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 125/282 (44%), Positives = 187/282 (66%), Gaps = 32/282 (11%)
Query: 38 LTINGKTYHTDDYTNVTPKILSYLNKNLHNKKYHPLCMLKQRIINFFYSEFVGKKGTPIF 97
L + GK+Y DD+TN+T K+LS + +NLHN+K+HPL ++K+R+ FY +++G+ TP+F
Sbjct: 51 LELLGKSYPQDDHTNLTQKVLSKVGRNLHNQKFHPLWLIKERVKEHFYQQYMGRSRTPLF 110
Query: 98 SIYDSISPVVTVEENFDSLLVAKDHVSRSKNDCYYVNREYLLRAHTTAHQSELIRMGLDN 157
S+YD +SPVVT +NFDSLL+ DH SR K D YY+NR ++LRAHT+AHQ +L+ GL+
Sbjct: 111 SVYDQLSPVVTTWQNFDSLLIPADHPSRKKGDNYYLNRGHMLRAHTSAHQWDLLHAGLNA 170
Query: 158 FVVFGDVYRRDQIDSTHFPVFHQADGVHLLNRDQVSRGDIGVGTSLKIMTIFTPTSQEYF 217
F+V GDVYRRDQIDS H+PVFHQ +GV L ++ ++ G
Sbjct: 171 FLVVGDVYRRDQIDSQHYPVFHQLEGVRLFSKHELFAG---------------------- 208
Query: 218 YIKKCNKISESIGQNIVIFEQGGVHTDEKQARHTLDATKVMEQKLKNSLVKLAKILFGDD 277
+K G+++ +FE+ + KQ HT++A K++E LK L +L LFGD
Sbjct: 209 -VKD--------GESLQLFEESS-RSAHKQETHTMEAVKLVEFDLKQVLTRLVTHLFGDG 258
Query: 278 IQMRWISEYFPFTHPSWELEILLNDKWVEILGCGVIRHEILD 319
+++RW+ YFPFTHPS+E+EI +W+E+LGCGV+ ++++
Sbjct: 259 LEVRWVDCYFPFTHPSFEMEINFRGEWLEVLGCGVMEQQLVN 300
>sp|Q99M01|SYFM_MOUSE Phenylalanine--tRNA ligase, mitochondrial OS=Mus musculus GN=Fars2
PE=2 SV=1
Length = 451
Score = 261 bits (667), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 124/295 (42%), Positives = 189/295 (64%), Gaps = 32/295 (10%)
Query: 25 STHAVKNDVEKATLTINGKTYHTDDYTNVTPKILSYLNKNLHNKKYHPLCMLKQRIINFF 84
++ + + L I GK+Y DD+TN+T K+LS + +NLHN+K+HPL ++K+R+ F
Sbjct: 38 ASQSAVQGAPGSVLEILGKSYPQDDHTNLTQKVLSKVGRNLHNQKFHPLWLIKERVKEHF 97
Query: 85 YSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSKNDCYYVNREYLLRAHTT 144
Y +++ + TP+FS+YD + PVVT +NFDSLL+ DH SR K D YY+NR ++LRAHT+
Sbjct: 98 YQQYMVRSRTPLFSVYDQLPPVVTTWQNFDSLLIPADHPSRKKGDNYYLNRAHMLRAHTS 157
Query: 145 AHQSELIRMGLDNFVVFGDVYRRDQIDSTHFPVFHQADGVHLLNRDQVSRGDIGVGTSLK 204
AHQ +L+ GL+ F+V GDVYRRDQID H+PVFHQ +GV L ++ ++ G
Sbjct: 158 AHQWDLLHAGLNAFLVVGDVYRRDQIDCQHYPVFHQLEGVRLFSKHELFAG--------- 208
Query: 205 IMTIFTPTSQEYFYIKKCNKISESIGQNIVIFEQGGVHTDEKQARHTLDATKVMEQKLKN 264
+K G+++ +FE+G + KQ HT++A K++E LK
Sbjct: 209 --------------VKD--------GESLQLFEEGS-RSAHKQETHTMEAVKLVEFDLKQ 245
Query: 265 SLVKLAKILFGDDIQMRWISEYFPFTHPSWELEILLNDKWVEILGCGVIRHEILD 319
L +L LFGD +++RW+ YFPFTHPS+E+EI +W+E+LGCGV+ ++++
Sbjct: 246 VLTRLVTHLFGDGLEVRWVDCYFPFTHPSFEMEINFRGEWLEVLGCGVMEQQLVN 300
>sp|Q94K73|SYFM_ARATH Phenylalanine--tRNA ligase, chloroplastic/mitochondrial
OS=Arabidopsis thaliana GN=At3g58140 PE=1 SV=1
Length = 429
Score = 184 bits (468), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 106/287 (36%), Positives = 143/287 (49%), Gaps = 61/287 (21%)
Query: 32 DVEKATLTINGKTYHTDDYTNVTPKILSYLNKNLHNKKYHPLCMLKQRIINFFYSEFVGK 91
D+ + N D NV I S L LH + HP+ +LK I ++F S + K
Sbjct: 56 DIGGVAIARNDVVREDDPTNNVPDSIFSKLGMQLHRRDKHPIGILKNAIYDYFDSNYSNK 115
Query: 92 KGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSKNDCYYVNREYLLRAHTTAHQSELI 151
F ++ +SP+VT ++NFD +LV DHVSRS ND YYV+ + +LR HT+AHQ+EL+
Sbjct: 116 -----FEKFEDLSPIVTTKQNFDDVLVPADHVSRSLNDTYYVDSQTVLRCHTSAHQAELL 170
Query: 152 RMGLDNFVVFGDVYRRDQIDSTHFPVFHQADGVHLLNRDQVSRGDIGVGTSLKIMTIFTP 211
R G F+V GDVYRRD IDSTH+PVFHQ +G +F+P
Sbjct: 171 RKGHSRFLVTGDVYRRDSIDSTHYPVFHQMEG----------------------FCVFSP 208
Query: 212 TSQEYFYIKKCNKISESIGQNIVIFEQGGVHTDEKQARHTLDATKVMEQKLKNSLVKLAK 271
E D+T + LK L LA+
Sbjct: 209 ---------------------------------EDWNGSGKDSTLYAAEDLKKCLEGLAR 235
Query: 272 ILFGDDIQMRWISEYFPFTHPSWELEILLNDKWVEILGCGVIRHEIL 318
LFG ++MRW+ YFPFT+PS+ELEI + W+E+LGCGV IL
Sbjct: 236 HLFG-SVEMRWVDTYFPFTNPSFELEIYFKEDWLEVLGCGVTEQVIL 281
>sp|Q86A68|SYFM_DICDI Phenylalanine--tRNA ligase, mitochondrial OS=Dictyostelium
discoideum GN=mpheS PE=3 SV=1
Length = 454
Score = 181 bits (460), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 102/268 (38%), Positives = 147/268 (54%), Gaps = 39/268 (14%)
Query: 52 NVTPKILSYLNKNLHNKKYHPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEE 111
N++ I + KNLH K+ HPL ++K++I F ++ ++ F +DS P V+V+E
Sbjct: 51 NISKSITEKIGKNLHCKRDHPLNIIKKKIQYHFQNKLSDEEHK--FQFFDSFEPKVSVKE 108
Query: 112 NFDSLLVAKDHVSRSKNDCYYVNREYLLRAHTTAHQSELIRMGLDNFVVFGDVYRRDQID 171
NFD LL DHV RS ND YY +++ LLR HT+AHQS+L+R F+V GDVYRRD ID
Sbjct: 109 NFDELLFPVDHVGRSPNDTYYFSKDQLLRTHTSAHQSQLLREQEKAFLVTGDVYRRDTID 168
Query: 172 STHFPVFHQADGVHLLNRDQVSRGDIGVGTSLKIMTIFTPTSQEYFYIKKCNKISESIGQ 231
+ H+PVFHQ +GV + +D+V+ G F T Y
Sbjct: 169 AVHYPVFHQMEGVKVF-KDKVNLAIDG--------KPFDETIDYY--------------- 204
Query: 232 NIVIFEQGGVHTDEKQARHTLDATKVMEQKLKNSLVKLAKILFGDDIQMRWISEYFPFTH 291
E L + K +E+ LK SL + + + G D+Q+RWI YFPFT
Sbjct: 205 -------------EDNNYKQLQSVKDVEKDLKQSLESMIRSVIGQDLQVRWIDAYFPFTS 251
Query: 292 PSWELEILLNDKWVEILGCGVIRHEILD 319
PS+E+EI +W+E+LGCGV+ I++
Sbjct: 252 PSFEMEIYFQGQWLEVLGCGVVHPSIMN 279
>sp|P08425|SYFM_YEAST Phenylalanine--tRNA ligase, mitochondrial OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=MSF1 PE=1
SV=3
Length = 469
Score = 171 bits (434), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 107/309 (34%), Positives = 165/309 (53%), Gaps = 43/309 (13%)
Query: 38 LTINGKTYHTD-DYTNVTPKILSYLNKNLHNKKYHPLCMLKQRIINFFYSEFVGKKGTPI 96
+ ING Y TD TNVT I+ +++LH K+ HP+ +L+ + + KK +
Sbjct: 25 VEINGIKYKTDPQTTNVTDSIIKLTDRSLHLKESHPVGILR---------DLIEKKLNSV 75
Query: 97 ---FSIYDSISPVVTVEENFDSLLVAKDHVSRSKNDCYYVNREYLLRAHTTAHQSEL--- 150
F I+++ PVVT ENFDSL KDH RSK+D YY+N +LLR HT+AH+ E
Sbjct: 76 DNTFKIFNNFKPVVTTMENFDSLGFPKDHPGRSKSDTYYINETHLLRTHTSAHELECFQK 135
Query: 151 IRMGLDN----FVVFGDVYRRDQIDSTHFPVFHQADGVHLLNRDQVSRGDIGVGTSLKIM 206
IR DN F++ DVYRRD+ID TH+PVFHQ +G + R ++ D+GV + I
Sbjct: 136 IRNDSDNIKSGFLISADVYRRDEIDKTHYPVFHQMEGATIWKR---TKADVGVKEPMYIE 192
Query: 207 TIFTPTSQEYFYIKKCNKISESIGQNIVIFEQGGVHTDEKQARHTLDATKVMEQKLKNSL 266
I Q + K N + ++ + + ++ + KQ + + Q LK S+
Sbjct: 193 KIREDIRQVENLLNKEN-VKITVDDDTIPLKEN----NPKQEYMSDLEVDLCSQHLKRSI 247
Query: 267 VKLAKILFG---------------DDIQMRWISEYFPFTHPSWELEILLNDKWVEILGCG 311
+ +F ++++RWI+ YFP+T PSWE+E+ +W+E+ GCG
Sbjct: 248 ELIVSEVFNKKISSMIKNKANNTPKELKVRWINAYFPWTAPSWEIEVWWQGEWLELCGCG 307
Query: 312 VIRHEILDR 320
+IR ++L R
Sbjct: 308 LIRQDVLLR 316
>sp|O74952|SYFM_SCHPO Phenylalanine--tRNA ligase, mitochondrial OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=mfs1 PE=3 SV=1
Length = 429
Score = 161 bits (407), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 103/293 (35%), Positives = 152/293 (51%), Gaps = 54/293 (18%)
Query: 46 HTDDYTNVTPKILSYLNKNLHNKKYHPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISP 105
TD ++NV I S + +NL K+ HP+C L+Q + F + SP
Sbjct: 25 QTDSWSNVPEHIHSKIGRNLFQKEGHPICSLRQLLEQQFQKFEMNN--------VQKESP 76
Query: 106 VVTVEENFDSLLVAKDHVSRSKNDCYYVNREYLLRAHTTAHQSE----LIRMGL--DNFV 159
+V+VE NFDSL K HVSRSK+D YY+N + LR HT+AHQ E L + G + F+
Sbjct: 77 IVSVETNFDSLGFPKTHVSRSKSDTYYMNNKTCLRTHTSAHQPEEFSRLAKEGFKKNGFL 136
Query: 160 VFGDVYRRDQIDSTHFPVFHQADGVHLLNRDQVSR-----GDIGVGTSLKIMTIFTPTSQ 214
+ DVYRRD++DS+H+P+FHQ +G + NR+ ++ + + SLK M T+
Sbjct: 137 ITADVYRRDEVDSSHYPIFHQMEGALVWNRNDTAKMKNDLKKVALSPSLKSMVDDETTAL 196
Query: 215 EYFYIKKCNKISESIGQNIVIFEQGGVHTDEKQARHTLDATKVMEQKLKNS-------LV 267
E H D Q ++L+ TK + Q LK++ LV
Sbjct: 197 E-------------------------THND-MQDIYSLEETKFVSQHLKDTLTTVIHDLV 230
Query: 268 KLAKILF--GDDIQMRWISEYFPFTHPSWELEILLNDKWVEILGCGVIRHEIL 318
LA + + ++ RW + FPFT PS++LEI KW+EILGCGV++ +L
Sbjct: 231 SLAPSISSGAEQVRYRWTYDSFPFTKPSFQLEIDWKGKWLEILGCGVVQDRLL 283
>sp|Q8EUJ8|SYFA_MYCPE Phenylalanine--tRNA ligase alpha subunit OS=Mycoplasma penetrans
(strain HF-2) GN=pheS PE=3 SV=1
Length = 341
Score = 68.6 bits (166), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 67/118 (56%), Gaps = 13/118 (11%)
Query: 71 HPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSKNDC 130
+P+ ++K I+ FF KK F I S V +VE NFDSL + KDH +RS +D
Sbjct: 104 NPIDLVKNEIVKFF------KKAN--FKILTE-SEVTSVEFNFDSLNIKKDHPARSISDT 154
Query: 131 YYVNREYLLRAHTTAHQSELIRM--GLDNFVVF--GDVYRRDQIDSTHFPVFHQADGV 184
+Y++ + LLR H TA S+ +RM + V G+VYR+D D+TH F+Q D V
Sbjct: 155 FYIDDKQLLRVHNTAITSKALRMFNKEEEIKVLSHGNVYRKDDDDATHSHQFNQIDMV 212
>sp|B5FDX4|SYFA_VIBFM Phenylalanine--tRNA ligase alpha subunit OS=Vibrio fischeri (strain
MJ11) GN=pheS PE=3 SV=1
Length = 327
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 64/129 (49%), Gaps = 12/129 (9%)
Query: 58 LSYLNKNLHNKKYHPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLL 117
+S + + N HP+ +RI FF + P I D+ NFD+L
Sbjct: 94 VSLPGRRIENGGLHPVTRTVERIEQFFGELGFSTESGP--EIEDAF-------HNFDALN 144
Query: 118 VAKDHVSRSKNDCYYVNREYLLRAHTTAHQSELIRMGLD--NFVVFGDVYRRDQIDSTHF 175
+A+DH +R+ +D ++ N + +LR HT+ Q + G F+ G VYR D D TH
Sbjct: 145 IAEDHPARTDHDTFFFNPDLMLRTHTSGVQIRTMENGKPPFRFIAPGRVYRND-YDQTHT 203
Query: 176 PVFHQADGV 184
P+FHQ +G+
Sbjct: 204 PMFHQVEGM 212
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 33/47 (70%), Gaps = 1/47 (2%)
Query: 273 LFGDDIQMRWISEYFPFTHPSWELEILLND-KWVEILGCGVIRHEIL 318
F +++++R+ +FPFT PS E+++ D KW+E+LGCG++ +L
Sbjct: 234 FFEEEVEVRFRPSFFPFTEPSAEVDVKRKDGKWLEVLGCGMVHPNVL 280
>sp|Q5E5G6|SYFA_VIBF1 Phenylalanine--tRNA ligase alpha subunit OS=Vibrio fischeri (strain
ATCC 700601 / ES114) GN=pheS PE=3 SV=1
Length = 327
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 64/129 (49%), Gaps = 12/129 (9%)
Query: 58 LSYLNKNLHNKKYHPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLL 117
+S + + N HP+ +RI FF + P I D+ NFD+L
Sbjct: 94 VSLPGRRIENGGLHPVTRTVERIEQFFGELGFSTESGP--EIEDAF-------HNFDALN 144
Query: 118 VAKDHVSRSKNDCYYVNREYLLRAHTTAHQSELIRMGLD--NFVVFGDVYRRDQIDSTHF 175
+A+DH +R+ +D ++ N + +LR HT+ Q + G F+ G VYR D D TH
Sbjct: 145 IAEDHPARTDHDTFFFNPDLMLRTHTSGVQIRTMENGKPPFRFIAPGRVYRND-YDQTHT 203
Query: 176 PVFHQADGV 184
P+FHQ +G+
Sbjct: 204 PMFHQVEGM 212
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 33/47 (70%), Gaps = 1/47 (2%)
Query: 273 LFGDDIQMRWISEYFPFTHPSWELEILLND-KWVEILGCGVIRHEIL 318
F +++++R+ +FPFT PS E+++ D KW+E+LGCG++ +L
Sbjct: 234 FFEEEVEVRFRPSFFPFTEPSAEVDVKRKDGKWLEVLGCGMVHPNVL 280
>sp|Q6LQ72|SYFA_PHOPR Phenylalanine--tRNA ligase alpha subunit OS=Photobacterium
profundum GN=pheS PE=3 SV=2
Length = 327
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 63/129 (48%), Gaps = 12/129 (9%)
Query: 58 LSYLNKNLHNKKYHPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLL 117
+S + + N HP+ +RI FF + P I D+ NFD+L
Sbjct: 94 VSLPGRRIENGGLHPVTRTVERIEQFFGELGFSTESGP--EIEDAF-------HNFDALN 144
Query: 118 VAKDHVSRSKNDCYYVNREYLLRAHTTAHQSELIRMGLD--NFVVFGDVYRRDQIDSTHF 175
+A DH +R+ +D ++ N + +LR HT+ Q + G F+ G VYR D D TH
Sbjct: 145 IADDHPARTDHDTFFFNPDLMLRTHTSGVQIRTMEHGKPPFRFIAPGRVYRND-YDQTHT 203
Query: 176 PVFHQADGV 184
P+FHQ +G+
Sbjct: 204 PMFHQVEGM 212
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 261 KLKNSLVKLAKILFGDDIQMRWISEYFPFTHPSWELEILLND-KWVEILGCGVIRHEIL 318
+LK L + F +++++R+ +FPFT PS E+++ D KW+E+LGCG++ +L
Sbjct: 222 QLKGILNEFLCNFFEEEVEVRFRPSFFPFTEPSAEVDVKRKDGKWLEVLGCGMVHPNVL 280
>sp|B7VPK0|SYFA_VIBSL Phenylalanine--tRNA ligase alpha subunit OS=Vibrio splendidus
(strain LGP32) GN=pheS PE=3 SV=1
Length = 327
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 63/129 (48%), Gaps = 12/129 (9%)
Query: 58 LSYLNKNLHNKKYHPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLL 117
+S + + N HP+ +RI FF + P I D+ NFD+L
Sbjct: 94 VSLPGRRIENGGLHPVTRTVERIEQFFGELGFSTESGP--EIEDAF-------HNFDALN 144
Query: 118 VAKDHVSRSKNDCYYVNREYLLRAHTTAHQSELIRMGLD--NFVVFGDVYRRDQIDSTHF 175
+A DH +R+ +D ++ N + +LR HT+ Q + G F+ G VYR D D TH
Sbjct: 145 IADDHPARTDHDTFFFNPDLMLRTHTSGVQIRTMENGKPPFRFIAPGRVYRND-YDQTHT 203
Query: 176 PVFHQADGV 184
P+FHQ +G+
Sbjct: 204 PMFHQVEGM 212
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 33/47 (70%), Gaps = 1/47 (2%)
Query: 273 LFGDDIQMRWISEYFPFTHPSWELEILLND-KWVEILGCGVIRHEIL 318
F +++++R+ +FPFT PS E+++ D KW+E+LGCG++ +L
Sbjct: 234 FFEEEVEVRFRPSFFPFTEPSAEVDVKRKDGKWLEVLGCGMVHPNVL 280
>sp|B6EN08|SYFA_ALISL Phenylalanine--tRNA ligase alpha subunit OS=Aliivibrio salmonicida
(strain LFI1238) GN=pheS PE=3 SV=1
Length = 327
Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 63/129 (48%), Gaps = 12/129 (9%)
Query: 58 LSYLNKNLHNKKYHPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLL 117
+S + + N HP+ +RI FF + P I D+ NFD+L
Sbjct: 94 VSLPGRRIENGGLHPVTRTVERIEQFFGELGFSTESGP--EIEDAF-------HNFDALN 144
Query: 118 VAKDHVSRSKNDCYYVNREYLLRAHTTAHQSELIRMGLD--NFVVFGDVYRRDQIDSTHF 175
+A DH +R+ +D ++ N + +LR HT+ Q + G F+ G VYR D D TH
Sbjct: 145 IADDHPARTDHDTFFFNPDLMLRTHTSGVQIRTMENGKPPFRFIAPGRVYRND-YDQTHT 203
Query: 176 PVFHQADGV 184
P+FHQ +G+
Sbjct: 204 PMFHQVEGM 212
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 33/47 (70%), Gaps = 1/47 (2%)
Query: 273 LFGDDIQMRWISEYFPFTHPSWELEILLND-KWVEILGCGVIRHEIL 318
F +++++R+ +FPFT PS E+++ D KW+E+LGCG++ +L
Sbjct: 234 FFEEEVEVRFRPSFFPFTEPSAEVDVKRKDGKWLEVLGCGMVHPNVL 280
>sp|Q87Q60|SYFA_VIBPA Phenylalanine--tRNA ligase alpha subunit OS=Vibrio parahaemolyticus
serotype O3:K6 (strain RIMD 2210633) GN=pheS PE=3 SV=1
Length = 327
Score = 65.9 bits (159), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 61/125 (48%), Gaps = 12/125 (9%)
Query: 62 NKNLHNKKYHPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKD 121
+ + N HP+ +RI FF + P I D+ NFD+L +A D
Sbjct: 98 GRRIENGGLHPVTRTVERIEKFFGELGFNTEAGP--EIEDAF-------HNFDALNIAAD 148
Query: 122 HVSRSKNDCYYVNREYLLRAHTTAHQSELIRMGLD--NFVVFGDVYRRDQIDSTHFPVFH 179
H +R+ +D ++ N + +LR HT+ Q + G F+ G VYR D D TH P+FH
Sbjct: 149 HPARTDHDTFFFNPDLMLRTHTSGVQIRTMENGKPPFRFIAPGRVYRND-YDQTHTPMFH 207
Query: 180 QADGV 184
Q +G+
Sbjct: 208 QVEGM 212
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 33/47 (70%), Gaps = 1/47 (2%)
Query: 273 LFGDDIQMRWISEYFPFTHPSWELEIL-LNDKWVEILGCGVIRHEIL 318
F +++++R+ YFPFT PS E+++ N KW+E+LGCG++ +L
Sbjct: 234 FFEEEVEVRFRPSYFPFTEPSAEVDVKGKNGKWLEVLGCGMVHPNVL 280
>sp|A7MVJ5|SYFA_VIBHB Phenylalanine--tRNA ligase alpha subunit OS=Vibrio harveyi (strain
ATCC BAA-1116 / BB120) GN=pheS PE=3 SV=1
Length = 327
Score = 65.9 bits (159), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 62/125 (49%), Gaps = 12/125 (9%)
Query: 62 NKNLHNKKYHPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKD 121
+ + N HP+ +RI FF + P I D+ NFD+L +A+D
Sbjct: 98 GRRIENGGLHPVTRTVERIEQFFGELGFNTESGP--EIEDAFH-------NFDALNIAED 148
Query: 122 HVSRSKNDCYYVNREYLLRAHTTAHQSELIRMGLD--NFVVFGDVYRRDQIDSTHFPVFH 179
H +R+ +D ++ N + +LR HT+ Q + G F+ G VYR D D TH P+FH
Sbjct: 149 HPARTDHDTFFFNPDLMLRTHTSGVQIRTMENGKPPFRFIAPGRVYRND-YDQTHTPMFH 207
Query: 180 QADGV 184
Q +G+
Sbjct: 208 QVEGM 212
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 33/47 (70%), Gaps = 1/47 (2%)
Query: 273 LFGDDIQMRWISEYFPFTHPSWELEIL-LNDKWVEILGCGVIRHEIL 318
F +++++R+ YFPFT PS E+++ N KW+E+LGCG++ +L
Sbjct: 234 FFEEEVEVRFRPSYFPFTEPSAEVDVKGKNGKWLEVLGCGMVHPNVL 280
>sp|Q46JK1|SYFA_PROMT Phenylalanine--tRNA ligase alpha subunit OS=Prochlorococcus marinus
(strain NATL2A) GN=pheS PE=3 SV=1
Length = 335
Score = 65.5 bits (158), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 58/115 (50%), Gaps = 13/115 (11%)
Query: 71 HPLCMLKQRIINFFYS-EFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSKND 129
HPL ++II+ F + +G I + Y NF++L + DH +R D
Sbjct: 117 HPLITTTEQIIDLFLGLGYQVSEGPEIENDY----------YNFEALNIPPDHPARDMQD 166
Query: 130 CYYVNREYLLRAHTTAHQSELI--RMGLDNFVVFGDVYRRDQIDSTHFPVFHQAD 182
+Y+ EYLLR HT+ Q + + V G VYRRD +D+TH PVFHQ +
Sbjct: 167 TFYLGGEYLLRTHTSPVQIRCLESKKPPVRIVSPGRVYRRDAVDATHSPVFHQVE 221
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 262 LKNSLVKLAKILFGDDIQMRWISEYFPFTHPSWELEILLNDKWVEILGCGVIRHEILD 319
L+ +++ K FGD + +R+ + YFPFT PS E+++ KW+E++GCG++ +L+
Sbjct: 234 LRGTVMAFLKAFFGD-LPIRFRASYFPFTEPSAEVDVQWRGKWLEVMGCGMVDPAVLE 290
>sp|Q7MK39|SYFA_VIBVY Phenylalanine--tRNA ligase alpha subunit OS=Vibrio vulnificus
(strain YJ016) GN=pheS PE=3 SV=1
Length = 327
Score = 65.5 bits (158), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 65/125 (52%), Gaps = 12/125 (9%)
Query: 62 NKNLHNKKYHPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKD 121
+ + N HP+ +RI FF G+ G F++ +S + NFD+L +A D
Sbjct: 98 GRRIENGGLHPVTRTVERIEQFF-----GELG---FNV-ESGPEIEDAFHNFDALNIAAD 148
Query: 122 HVSRSKNDCYYVNREYLLRAHTTAHQSELIRMGLD--NFVVFGDVYRRDQIDSTHFPVFH 179
H +R+ +D ++ N + +LR HT+ Q + G F+ G VYR D D TH P+FH
Sbjct: 149 HPARTDHDTFFFNPDLMLRTHTSGVQIRTMENGKPPFRFIAPGRVYRND-YDQTHTPMFH 207
Query: 180 QADGV 184
Q +G+
Sbjct: 208 QVEGM 212
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 33/47 (70%), Gaps = 1/47 (2%)
Query: 273 LFGDDIQMRWISEYFPFTHPSWELEIL-LNDKWVEILGCGVIRHEIL 318
F +++++R+ YFPFT PS E+++ N KW+E+LGCG++ +L
Sbjct: 234 FFEEEVEVRFRPSYFPFTEPSAEVDVKGKNGKWLEVLGCGMVHPNVL 280
>sp|Q8DA40|SYFA_VIBVU Phenylalanine--tRNA ligase alpha subunit OS=Vibrio vulnificus
(strain CMCP6) GN=pheS PE=3 SV=1
Length = 327
Score = 65.5 bits (158), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 65/125 (52%), Gaps = 12/125 (9%)
Query: 62 NKNLHNKKYHPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKD 121
+ + N HP+ +RI FF G+ G F++ +S + NFD+L +A D
Sbjct: 98 GRRIENGGLHPVTRTVERIEQFF-----GELG---FNV-ESGPEIEDAFHNFDALNIAAD 148
Query: 122 HVSRSKNDCYYVNREYLLRAHTTAHQSELIRMGLD--NFVVFGDVYRRDQIDSTHFPVFH 179
H +R+ +D ++ N + +LR HT+ Q + G F+ G VYR D D TH P+FH
Sbjct: 149 HPARTDHDTFFFNPDLMLRTHTSGVQIRTMENGKPPFRFIAPGRVYRND-YDQTHTPMFH 207
Query: 180 QADGV 184
Q +G+
Sbjct: 208 QVEGM 212
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 33/47 (70%), Gaps = 1/47 (2%)
Query: 273 LFGDDIQMRWISEYFPFTHPSWELEIL-LNDKWVEILGCGVIRHEIL 318
F +++++R+ YFPFT PS E+++ N KW+E+LGCG++ +L
Sbjct: 234 FFEEEVEVRFRPSYFPFTEPSAEVDVKGKNGKWLEVLGCGMVHPNVL 280
>sp|Q3ABT4|SYFA_CARHZ Phenylalanine--tRNA ligase alpha subunit OS=Carboxydothermus
hydrogenoformans (strain Z-2901 / DSM 6008) GN=pheS PE=3
SV=1
Length = 340
Score = 64.7 bits (156), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 64/121 (52%), Gaps = 16/121 (13%)
Query: 69 KYHPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEE-NFDSLLVAKDHVSRSK 127
K HPL ++ RI+ F S +G FS+ + P + + NF++L + KDH +R
Sbjct: 106 KLHPLTQVQHRIVEIFTS--MG------FSV--ATGPEIEKDYYNFEALNLPKDHPARDM 155
Query: 128 NDCYYVNREYLLRAHTTAHQSELIRMGLDNFVVF----GDVYRRDQIDSTHFPVFHQADG 183
D +Y+ E LLR HT+ Q ++ N + G VYRRD D+TH P+F Q +G
Sbjct: 156 QDSFYITEEVLLRTHTSPVQVRVMEKYAPNLPIRIISPGKVYRRDD-DATHSPMFAQCEG 214
Query: 184 V 184
+
Sbjct: 215 L 215
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 12/70 (17%)
Query: 262 LKNSLVKLAKILFGDDIQMRWISEYFPFTHPSWELEILL------------NDKWVEILG 309
LK L+ K LFG +MR YFPFT PS E++I W+EILG
Sbjct: 226 LKGVLLTFIKELFGPKTKMRLRPSYFPFTEPSAEVDISCVICGGIGCKVCKGSGWLEILG 285
Query: 310 CGVIRHEILD 319
G++ +L+
Sbjct: 286 SGMVHPRVLE 295
>sp|A5IIW2|SYFA_THEP1 Phenylalanine--tRNA ligase alpha subunit OS=Thermotoga petrophila
(strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=pheS PE=3
SV=1
Length = 325
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 15/121 (12%)
Query: 112 NFDSLLVAKDHVSRSKNDCYYVNREYLLRAHTTAHQ--SELIRMGLDNFVVFGDVYRRDQ 169
NFD+L + H +R ++D +Y+ + LLR HT+ Q + L R + G VYRRD
Sbjct: 138 NFDALNTPEWHPARDEHDSFYITDDLLLRTHTSPVQIRTMLERKPPIAIISPGKVYRRD- 196
Query: 170 IDSTHFPVFHQADGVHLLNRD-----------QVSRGDIGVGTSLKIMTIFTPTSQEYFY 218
D+TH P+FHQ +G+H ++RD + +R G G +++ F P ++ F
Sbjct: 197 YDATHLPMFHQVEGLH-VDRDLSVAHLKFTLEEFARRMFGEGAKVRLRPSFFPFTEPSFE 255
Query: 219 I 219
+
Sbjct: 256 V 256
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 37/53 (69%), Gaps = 1/53 (1%)
Query: 262 LKNSLVKLAKILFGDDIQMRWISEYFPFTHPSWELEILLND-KWVEILGCGVI 313
LK +L + A+ +FG+ ++R +FPFT PS+E+++ L+ W+EILG G++
Sbjct: 222 LKFTLEEFARRMFGEGAKVRLRPSFFPFTEPSFEVDVYLSGYGWLEILGAGMV 274
>sp|B1LCK9|SYFA_THESQ Phenylalanine--tRNA ligase alpha subunit OS=Thermotoga sp. (strain
RQ2) GN=pheS PE=3 SV=1
Length = 325
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 15/121 (12%)
Query: 112 NFDSLLVAKDHVSRSKNDCYYVNREYLLRAHTTAHQ--SELIRMGLDNFVVFGDVYRRDQ 169
NFD+L + H +R ++D +Y+ + LLR HT+ Q + L R + G VYRRD
Sbjct: 138 NFDALNTPEWHPARDEHDSFYITDDLLLRTHTSPVQIRTMLERKPPIAIISPGKVYRRD- 196
Query: 170 IDSTHFPVFHQADGVHLLNRD-----------QVSRGDIGVGTSLKIMTIFTPTSQEYFY 218
D+TH P+FHQ +G+H ++RD + +R G G +++ F P ++ F
Sbjct: 197 YDATHLPMFHQVEGLH-VDRDLSVAHLKFTLEEFARRMFGEGAKVRLRPSFFPFTEPSFE 255
Query: 219 I 219
+
Sbjct: 256 V 256
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 37/53 (69%), Gaps = 1/53 (1%)
Query: 262 LKNSLVKLAKILFGDDIQMRWISEYFPFTHPSWELEILLND-KWVEILGCGVI 313
LK +L + A+ +FG+ ++R +FPFT PS+E+++ L+ W+EILG G++
Sbjct: 222 LKFTLEEFARRMFGEGAKVRLRPSFFPFTEPSFEVDVYLSGYGWLEILGAGMV 274
>sp|Q9WZS8|SYFA_THEMA Phenylalanine--tRNA ligase alpha subunit OS=Thermotoga maritima
(strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)
GN=pheS PE=3 SV=1
Length = 325
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 15/121 (12%)
Query: 112 NFDSLLVAKDHVSRSKNDCYYVNREYLLRAHTTAHQ--SELIRMGLDNFVVFGDVYRRDQ 169
NFD+L + H +R ++D +Y+ + LLR HT+ Q + L R + G VYRRD
Sbjct: 138 NFDALNTPEWHPARDEHDSFYITDDLLLRTHTSPVQIRTMLERKPPIAIISPGKVYRRD- 196
Query: 170 IDSTHFPVFHQADGVHLLNRD-----------QVSRGDIGVGTSLKIMTIFTPTSQEYFY 218
D+TH P+FHQ +G+H ++RD + +R G G +++ F P ++ F
Sbjct: 197 YDATHLPMFHQVEGLH-VDRDLSVAHLKFTLEEFARRMFGEGAKVRLRPSFFPFTEPSFE 255
Query: 219 I 219
+
Sbjct: 256 V 256
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 37/53 (69%), Gaps = 1/53 (1%)
Query: 262 LKNSLVKLAKILFGDDIQMRWISEYFPFTHPSWELEILLND-KWVEILGCGVI 313
LK +L + A+ +FG+ ++R +FPFT PS+E+++ L+ W+EILG G++
Sbjct: 222 LKFTLEEFARRMFGEGAKVRLRPSFFPFTEPSFEVDVYLSGYGWLEILGAGMV 274
>sp|Q9CC17|SYFA_MYCLE Phenylalanine--tRNA ligase alpha subunit OS=Mycobacterium leprae
(strain TN) GN=pheS PE=3 SV=2
Length = 341
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 79/160 (49%), Gaps = 26/160 (16%)
Query: 71 HPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEE-NFDSLLVAKDHVSRSKND 129
HP+ +L + I + F + +G + + D P V E+ NFD+L DH +RS+ D
Sbjct: 110 HPITILAEHIADTFIA--MG------WELVDG--PEVETEQFNFDALNFPADHPARSEQD 159
Query: 130 CYYV---NREYLLRAHTTAHQ-SELIRMGLDNFVV-FGDVYRRDQIDSTHFPVFHQADGV 184
+Y+ LLR HT+ Q L+ L +V+ G +R D++D+TH PVFHQ +G+
Sbjct: 160 TFYIAPDGSRQLLRTHTSPVQVRTLLERELPVYVISIGRAFRTDEVDATHTPVFHQVEGL 219
Query: 185 ---------HLLNR-DQVSRGDIGVGTSLKIMTIFTPTSQ 214
HL D +R + G T +I F P ++
Sbjct: 220 AVDRGLSMAHLRGTLDIFARAEFGPSTRTRIRPHFFPFTE 259
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Query: 262 LKNSLVKLAKILFGDDIQMRWISEYFPFTHPSWELEILLNDK-----WVEILGCGVIRHE 316
L+ +L A+ FG + R +FPFT PS E+++ K WVE GCG++
Sbjct: 230 LRGTLDIFARAEFGPSTRTRIRPHFFPFTEPSAEVDVWFASKKDGADWVEWGGCGMVHPN 289
Query: 317 IL 318
+L
Sbjct: 290 VL 291
>sp|B9MRS9|SYFA_CALBD Phenylalanine--tRNA ligase alpha subunit OS=Caldicellulosiruptor
bescii (strain ATCC BAA-1888 / DSM 6725 / Z-1320)
GN=pheS PE=3 SV=1
Length = 340
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Query: 112 NFDSLLVAKDHVSRSKNDCYYVNREYLLRAHTTAHQSELIRMGLDNFVVF--GDVYRRDQ 169
NF++L + DH +R D +Y++ + LLR HT+ Q +++ + G VYR D+
Sbjct: 140 NFEALNIPADHPARDTQDTFYISEDVLLRTHTSPVQIRVMKSKKPPIKIISPGRVYRSDE 199
Query: 170 IDSTHFPVFHQADGV 184
+DSTH P+FHQ +G+
Sbjct: 200 VDSTHSPIFHQIEGL 214
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 12/69 (17%)
Query: 262 LKNSLVKLAKILFGDDIQMRWISEYFPFTHPSWELEILL------------NDKWVEILG 309
LK +L AK FG+ ++R+ +FPFT PS E++I + W+EILG
Sbjct: 225 LKGTLEVFAKRFFGEQTKVRFRPHHFPFTEPSAEVDISCIFCGGKGCRTCKGEGWIEILG 284
Query: 310 CGVIRHEIL 318
G++ ++L
Sbjct: 285 AGMVHRKVL 293
>sp|C3LLR5|SYFA_VIBCM Phenylalanine--tRNA ligase alpha subunit OS=Vibrio cholerae
serotype O1 (strain M66-2) GN=pheS PE=3 SV=1
Length = 327
Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 66/125 (52%), Gaps = 12/125 (9%)
Query: 62 NKNLHNKKYHPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKD 121
+ + N HP+ +RI +FF G+ G F++ +S + NFD+L +A D
Sbjct: 98 GRRIENGGLHPVTRTIERIESFF-----GELG---FTV-ESGPEIEDDFHNFDALNIAAD 148
Query: 122 HVSRSKNDCYYVNREYLLRAHTTAHQSELI--RMGLDNFVVFGDVYRRDQIDSTHFPVFH 179
H +R+ +D ++ N + +LR HT+ Q + R F+ G VYR D D TH P+FH
Sbjct: 149 HPARTDHDTFFFNPKLMLRTHTSGVQIRTLEERQPPLRFIAPGRVYRND-YDQTHTPMFH 207
Query: 180 QADGV 184
Q +G+
Sbjct: 208 QVEGM 212
Score = 51.6 bits (122), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 33/47 (70%), Gaps = 1/47 (2%)
Query: 273 LFGDDIQMRWISEYFPFTHPSWELEIL-LNDKWVEILGCGVIRHEIL 318
F +D+++R+ YFPFT PS E+++ N KW+E+LGCG++ +L
Sbjct: 234 FFEEDLEVRFRPSYFPFTEPSAEVDVKGKNGKWLEVLGCGMVHPNVL 280
>sp|Q9KSN7|SYFA_VIBCH Phenylalanine--tRNA ligase alpha subunit OS=Vibrio cholerae
serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
GN=pheS PE=3 SV=1
Length = 327
Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 66/125 (52%), Gaps = 12/125 (9%)
Query: 62 NKNLHNKKYHPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKD 121
+ + N HP+ +RI +FF G+ G F++ +S + NFD+L +A D
Sbjct: 98 GRRIENGGLHPVTRTIERIESFF-----GELG---FTV-ESGPEIEDDFHNFDALNIAAD 148
Query: 122 HVSRSKNDCYYVNREYLLRAHTTAHQSELI--RMGLDNFVVFGDVYRRDQIDSTHFPVFH 179
H +R+ +D ++ N + +LR HT+ Q + R F+ G VYR D D TH P+FH
Sbjct: 149 HPARTDHDTFFFNPKLMLRTHTSGVQIRTLEERQPPLRFIAPGRVYRND-YDQTHTPMFH 207
Query: 180 QADGV 184
Q +G+
Sbjct: 208 QVEGM 212
Score = 51.6 bits (122), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 33/47 (70%), Gaps = 1/47 (2%)
Query: 273 LFGDDIQMRWISEYFPFTHPSWELEIL-LNDKWVEILGCGVIRHEIL 318
F +D+++R+ YFPFT PS E+++ N KW+E+LGCG++ +L
Sbjct: 234 FFEEDLEVRFRPSYFPFTEPSAEVDVKGKNGKWLEVLGCGMVHPNVL 280
>sp|A5F1W4|SYFA_VIBC3 Phenylalanine--tRNA ligase alpha subunit OS=Vibrio cholerae
serotype O1 (strain ATCC 39541 / Ogawa 395 / O395)
GN=pheS PE=3 SV=1
Length = 327
Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 66/125 (52%), Gaps = 12/125 (9%)
Query: 62 NKNLHNKKYHPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKD 121
+ + N HP+ +RI +FF G+ G F++ +S + NFD+L +A D
Sbjct: 98 GRRIENGGLHPVTRTIERIESFF-----GELG---FTV-ESGPEIEDDFHNFDALNIAAD 148
Query: 122 HVSRSKNDCYYVNREYLLRAHTTAHQSELI--RMGLDNFVVFGDVYRRDQIDSTHFPVFH 179
H +R+ +D ++ N + +LR HT+ Q + R F+ G VYR D D TH P+FH
Sbjct: 149 HPARTDHDTFFFNPKLMLRTHTSGVQIRTLEERQPPLRFIAPGRVYRND-YDQTHTPMFH 207
Query: 180 QADGV 184
Q +G+
Sbjct: 208 QVEGM 212
Score = 51.6 bits (122), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 33/47 (70%), Gaps = 1/47 (2%)
Query: 273 LFGDDIQMRWISEYFPFTHPSWELEIL-LNDKWVEILGCGVIRHEIL 318
F +D+++R+ YFPFT PS E+++ N KW+E+LGCG++ +L
Sbjct: 234 FFEEDLEVRFRPSYFPFTEPSAEVDVKGKNGKWLEVLGCGMVHPNVL 280
>sp|B1MXE0|SYFA_LEUCK Phenylalanine--tRNA ligase alpha subunit OS=Leuconostoc citreum
(strain KM20) GN=pheS PE=3 SV=1
Length = 349
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 68/137 (49%), Gaps = 15/137 (10%)
Query: 78 QRIINFFYSEFVGKKGTPIFSIYDSI--SPVVTVEE-NFDSLLVAKDHVSRSKNDCYYVN 134
Q+II+ F+G F I D I SP V +E NF+ + KDH +R D +Y+
Sbjct: 111 QQIIDEIEQHFLGLG----FEIIDDIVDSPEVETDEYNFERENLPKDHPARDMQDTFYIT 166
Query: 135 REYLLRAHTTAHQSELIR-----MGLDNFVVFGDVYRRDQIDSTHFPVFHQADGVHLLNR 189
E LLR T+ QS + G + G VYRRD D+TH FHQ +G ++
Sbjct: 167 PEILLRTQTSPVQSRSLEKHDFSKGPLKMIAPGKVYRRDTDDATHSHQFHQVEG--MVVG 224
Query: 190 DQVSRGDIGVGTSLKIM 206
+ ++ D+ GT L IM
Sbjct: 225 ENITMADLK-GTLLSIM 240
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 10/67 (14%)
Query: 262 LKNSLVKLAKILFGDDIQMRWISEYFPFTHPSWELEILLND----------KWVEILGCG 311
LK +L+ + + LFG+ Q+R YFPFT PS E+++ N+ +W+E+LG G
Sbjct: 232 LKGTLLSIMQKLFGEKHQIRMRPSYFPFTEPSVEVDVSWNEVTPDMKPEDIEWIEVLGAG 291
Query: 312 VIRHEIL 318
+ +L
Sbjct: 292 MTHPNVL 298
>sp|O67087|SYFA_AQUAE Phenylalanine--tRNA ligase alpha subunit OS=Aquifex aeolicus
(strain VF5) GN=pheS PE=3 SV=1
Length = 338
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 46/76 (60%), Gaps = 4/76 (5%)
Query: 112 NFDSLLVAKDHVSRSKNDCYYVNRE-YLLRAHTTAHQ--SELIRMGLDNFVVFGDVYRRD 168
NFD L + K+H +R D +YVNRE YLLR HT+ Q + L + + G VYRRD
Sbjct: 138 NFDMLNIPKEHPARDMQDTFYVNREGYLLRTHTSPVQIRTMLKKKPPIQIIAPGKVYRRD 197
Query: 169 QIDSTHFPVFHQADGV 184
D TH P+FHQ +G+
Sbjct: 198 D-DPTHSPMFHQVEGL 212
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 12/70 (17%)
Query: 262 LKNSLVKLAKILFGDDIQMRWISEYFPFTHPSWELEI------------LLNDKWVEILG 309
+K + + K F D+ +R+ + YFPFT PS E++I + W+E++G
Sbjct: 223 MKYVIEEFLKKFFETDLPVRFRTSYFPFTEPSAEVDIGCVICHQEGCRVCKHTGWLEVMG 282
Query: 310 CGVIRHEILD 319
CG++ ++L+
Sbjct: 283 CGMVHPKVLE 292
>sp|A5D0U1|SYFA_PELTS Phenylalanine--tRNA ligase alpha subunit OS=Pelotomaculum
thermopropionicum (strain DSM 13744 / JCM 10971 / SI)
GN=pheS PE=3 SV=1
Length = 342
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 76/157 (48%), Gaps = 16/157 (10%)
Query: 65 LHNKKYHPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVS 124
L HPL ++ + I F +G +SI + V T NF++L + KDH +
Sbjct: 102 LPGGGKHPLTLVLEEIQRIFLG--LG------YSIVEGPE-VETDYYNFEALNLPKDHPA 152
Query: 125 RSKNDCYYVNREYLLRAHTTAHQ---SELIRMGLD-NFVVFGDVYRRDQIDSTHFPVFHQ 180
R D +++ E LLR HT+ Q E GL +V G VYRRD D+TH P+FHQ
Sbjct: 153 RDMQDTFFIGGEILLRTHTSPVQVRTMEKTAPGLPVKIIVPGKVYRRDD-DATHSPMFHQ 211
Query: 181 ADGVHLLNRDQVSRGDIGVGTSLKIMTIFTPTSQEYF 217
+G+ + R ++ D+ L +F P ++ F
Sbjct: 212 VEGLAVDRR--ITFSDLKGTLDLFAREMFGPQTRTRF 246
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 12/70 (17%)
Query: 262 LKNSLVKLAKILFGDDIQMRWISEYFPFTHPSWELEI------------LLNDKWVEILG 309
LK +L A+ +FG + R+ YFPFT PS E++I W+EILG
Sbjct: 226 LKGTLDLFAREMFGPQTRTRFRPSYFPFTEPSAEVDISCVMCGGRGCRVCSQTGWLEILG 285
Query: 310 CGVIRHEILD 319
G++ +L+
Sbjct: 286 SGMVHPRVLE 295
>sp|A0QHB6|SYFA_MYCA1 Phenylalanine--tRNA ligase alpha subunit OS=Mycobacterium avium
(strain 104) GN=pheS PE=3 SV=1
Length = 342
Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 75/160 (46%), Gaps = 26/160 (16%)
Query: 71 HPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEE-NFDSLLVAKDHVSRSKND 129
HP+ +L + I + F + + P V E+ NFD+L DH +RS+ D
Sbjct: 111 HPITILAEHIADTFIA----------MGWELAEGPEVEAEQFNFDALNFPADHPARSEQD 160
Query: 130 CYYVNRE---YLLRAHTTAHQ-SELIRMGLDNFVV-FGDVYRRDQIDSTHFPVFHQADGV 184
+Y+ E LLR HT+ Q L+ L +V+ G +R D++D+TH PVFHQ +G+
Sbjct: 161 TFYIAPEGSRQLLRTHTSPVQVRTLLARELPVYVISIGRTFRTDELDATHTPVFHQVEGL 220
Query: 185 ---------HLLNR-DQVSRGDIGVGTSLKIMTIFTPTSQ 214
HL D +R + G +I F P ++
Sbjct: 221 AVDRGLSMAHLRGTLDAFARAEFGPQARTRIRPHFFPFTE 260
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Query: 262 LKNSLVKLAKILFGDDIQMRWISEYFPFTHPSWELEILLNDK-----WVEILGCGVIRHE 316
L+ +L A+ FG + R +FPFT PS E+++ K WVE GCG++
Sbjct: 231 LRGTLDAFARAEFGPQARTRIRPHFFPFTEPSAEVDVWFVGKKGGAGWVEWGGCGMVHPN 290
Query: 317 IL 318
+L
Sbjct: 291 VL 292
>sp|Q740J1|SYFA_MYCPA Phenylalanine--tRNA ligase alpha subunit OS=Mycobacterium
paratuberculosis (strain ATCC BAA-968 / K-10) GN=pheS
PE=3 SV=1
Length = 347
Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 75/160 (46%), Gaps = 26/160 (16%)
Query: 71 HPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEE-NFDSLLVAKDHVSRSKND 129
HP+ +L + I + F + + P V E+ NFD+L DH +RS+ D
Sbjct: 116 HPITILAEHIADTFIA----------MGWELAEGPEVEAEQFNFDALNFPADHPARSEQD 165
Query: 130 CYYVNRE---YLLRAHTTAHQ-SELIRMGLDNFVV-FGDVYRRDQIDSTHFPVFHQADGV 184
+Y+ E LLR HT+ Q L+ L +V+ G +R D++D+TH PVFHQ +G+
Sbjct: 166 TFYIAPEGSRQLLRTHTSPVQVRTLLARELPVYVISIGRTFRTDELDATHTPVFHQVEGL 225
Query: 185 ---------HLLNR-DQVSRGDIGVGTSLKIMTIFTPTSQ 214
HL D +R + G +I F P ++
Sbjct: 226 AVDRGLSMAHLRGTLDAFARAEFGPQARTRIRPHFFPFTE 265
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Query: 262 LKNSLVKLAKILFGDDIQMRWISEYFPFTHPSWELEILLNDK-----WVEILGCGVIRHE 316
L+ +L A+ FG + R +FPFT PS E+++ K WVE GCG++
Sbjct: 236 LRGTLDAFARAEFGPQARTRIRPHFFPFTEPSAEVDVWFVGKKGGAGWVEWGGCGMVHPN 295
Query: 317 IL 318
+L
Sbjct: 296 VL 297
>sp|A4J4Z4|SYFA_DESRM Phenylalanine--tRNA ligase alpha subunit OS=Desulfotomaculum
reducens (strain MI-1) GN=pheS PE=3 SV=1
Length = 340
Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 64/121 (52%), Gaps = 16/121 (13%)
Query: 69 KYHPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEE-NFDSLLVAKDHVSRSK 127
+ HPL + Q I + F +G F I + P V ++ NF++L + KDH +R
Sbjct: 106 RMHPLTQVMQEIESIFMG--LG------FKIAEG--PEVELDYYNFEALNLPKDHPARDM 155
Query: 128 NDCYYVNREYLLRAHTTAHQ----SELIRMGLDNFVVFGDVYRRDQIDSTHFPVFHQADG 183
D +++N E LLR HT+ Q +++ + G VYRRD D+TH P+FHQ +G
Sbjct: 156 QDTFFINPEVLLRTHTSPVQVRTMEKMVPQVPIKIICPGRVYRRDD-DATHSPMFHQVEG 214
Query: 184 V 184
+
Sbjct: 215 L 215
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 12/70 (17%)
Query: 262 LKNSLVKLAKILFGDDIQMRWISEYFPFTHPSWELEILL------------NDKWVEILG 309
LK L A+ +FG D + R YFPFT PS E++I W+EILG
Sbjct: 226 LKGVLATFARQMFGLDTKTRLRPSYFPFTEPSAEVDISCFNCKGNGCRVCKGSGWLEILG 285
Query: 310 CGVIRHEILD 319
G++ +L+
Sbjct: 286 SGMVHPRVLE 295
>sp|A8Z6A5|SYFA_SULMW Phenylalanine--tRNA ligase alpha subunit OS=Sulcia muelleri (strain
GWSS) GN=pheS PE=3 SV=1
Length = 325
Score = 61.6 bits (148), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 63/123 (51%), Gaps = 25/123 (20%)
Query: 214 QEYFYIKKCNKI------------SESIGQNIVIFEQGGVHTDEKQARHT---------- 251
Q+ F+IKK NK+ E I I G V+ +EK + ++
Sbjct: 150 QDTFFIKKSNKLLRTHTSSVQIRYMEKNKPPIRIISPGRVYRNEKISAYSHCMFHQIEGL 209
Query: 252 -LDATKVMEQKLKNSLVKLAKILFGDDIQMRWISEYFPFTHPSWELEILLNDKWVEILGC 310
LD KV + LK+++ K FG I R+ YFPFT PS EL+IL N+KW+EI+GC
Sbjct: 210 YLDK-KVSFKDLKSTINFFIKNFFGKSIT-RFRPSYFPFTEPSAELDILWNNKWLEIIGC 267
Query: 311 GVI 313
G++
Sbjct: 268 GMV 270
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 61/128 (47%), Gaps = 16/128 (12%)
Query: 63 KNLHNKKYHPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVE-ENFDSLLVAKD 121
KNL ++ HP+ ++K RIIN F K G I P + + NF +L
Sbjct: 96 KNLGSR--HPISIIKHRIINIF-----NKIGFKICE-----GPEIEYDWYNFTALNFPYY 143
Query: 122 HVSRSKNDCYYVNRE-YLLRAHTTAHQSELIRMGLDNFVVF--GDVYRRDQIDSTHFPVF 178
H +R D +++ + LLR HT++ Q + + G VYR ++I + +F
Sbjct: 144 HPAREMQDTFFIKKSNKLLRTHTSSVQIRYMEKNKPPIRIISPGRVYRNEKISAYSHCMF 203
Query: 179 HQADGVHL 186
HQ +G++L
Sbjct: 204 HQIEGLYL 211
>sp|B9KAE8|SYFA_THENN Phenylalanine--tRNA ligase alpha subunit OS=Thermotoga neapolitana
(strain ATCC 49049 / DSM 4359 / NS-E) GN=pheS PE=3 SV=1
Length = 325
Score = 61.6 bits (148), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 52/87 (59%), Gaps = 4/87 (4%)
Query: 106 VVTVEENFDSLLVAKDHVSRSKNDCYYVNREYLLRAHTTAHQ--SELIRMGLDNFVVFGD 163
+ T NFD+L + H +R ++D +Y+ E LLR HT+ Q + L R + G
Sbjct: 132 IETTWHNFDALNTPEWHPARDEHDSFYITDELLLRTHTSPVQIRTMLERKPPIAIISPGK 191
Query: 164 VYRRDQIDSTHFPVFHQADGVHLLNRD 190
VYRRD D+TH P+FHQ +G+H ++RD
Sbjct: 192 VYRRD-YDATHLPMFHQVEGLH-VDRD 216
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 37/53 (69%), Gaps = 1/53 (1%)
Query: 262 LKNSLVKLAKILFGDDIQMRWISEYFPFTHPSWELEILLND-KWVEILGCGVI 313
LK +L + A+ +FG + ++R YFPFT PS+E+++ L+ W+EILG G++
Sbjct: 222 LKFTLEEFARRMFGKNARIRLRPSYFPFTEPSFEVDVYLSGYGWLEILGAGMV 274
>sp|A4XKJ8|SYFA_CALS8 Phenylalanine--tRNA ligase alpha subunit OS=Caldicellulosiruptor
saccharolyticus (strain ATCC 43494 / DSM 8903) GN=pheS
PE=3 SV=1
Length = 340
Score = 61.6 bits (148), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Query: 112 NFDSLLVAKDHVSRSKNDCYYVNREYLLRAHTTAHQSELIRMGLDNFVVF--GDVYRRDQ 169
NF++L + DH +R D +Y++ + LLR HT+ Q +++ + G VYR D+
Sbjct: 140 NFEALNIPADHPARDTQDTFYISDDVLLRTHTSPVQIRVMKSKKPPIKIISPGRVYRSDE 199
Query: 170 IDSTHFPVFHQADGV 184
+D+TH P+FHQ +G+
Sbjct: 200 VDATHSPIFHQIEGL 214
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 12/69 (17%)
Query: 262 LKNSLVKLAKILFGDDIQMRWISEYFPFTHPSWELEILL------------NDKWVEILG 309
LK +L AK FG++ ++R+ +FPFT PS E++I + W+EILG
Sbjct: 225 LKGTLEVFAKRFFGEETRVRFRPHHFPFTEPSAEVDISCIFCGGKGCKTCKGEGWIEILG 284
Query: 310 CGVIRHEIL 318
G++ ++L
Sbjct: 285 AGMVHRKVL 293
>sp|P94984|SYFA_MYCTU Phenylalanine--tRNA ligase alpha subunit OS=Mycobacterium
tuberculosis GN=pheS PE=3 SV=1
Length = 341
Score = 61.2 bits (147), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 74/160 (46%), Gaps = 26/160 (16%)
Query: 71 HPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEE-NFDSLLVAKDHVSRSKND 129
HP+ ML + + + F + + P V E+ NFD+L DH +R + D
Sbjct: 110 HPIIMLAEHVADTFIA----------MGWELAEGPEVETEQFNFDALNFPADHPARGEQD 159
Query: 130 CYYVNRE---YLLRAHTTAHQ-SELIRMGLDNFVV-FGDVYRRDQIDSTHFPVFHQADGV 184
+Y+ E LLR HT+ Q L+ L +++ G +R D++D+TH P+FHQ +G+
Sbjct: 160 TFYIAPEDSRQLLRTHTSPVQIRTLLARELPVYIISIGRTFRTDELDATHTPIFHQVEGL 219
Query: 185 ---------HLLNR-DQVSRGDIGVGTSLKIMTIFTPTSQ 214
HL D +R + G +I F P ++
Sbjct: 220 AVDRGLSMAHLRGTLDAFARAEFGPSARTRIRPHFFPFTE 259
Score = 45.1 bits (105), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Query: 262 LKNSLVKLAKILFGDDIQMRWISEYFPFTHPSWELEILLNDK-----WVEILGCGVIRHE 316
L+ +L A+ FG + R +FPFT PS E+++ +K WVE GCG++
Sbjct: 230 LRGTLDAFARAEFGPSARTRIRPHFFPFTEPSAEVDVWFANKIGGAAWVEWGGCGMVHPN 289
Query: 317 IL 318
+L
Sbjct: 290 VL 291
>sp|A5U306|SYFA_MYCTA Phenylalanine--tRNA ligase alpha subunit OS=Mycobacterium
tuberculosis (strain ATCC 25177 / H37Ra) GN=pheS PE=3
SV=1
Length = 341
Score = 61.2 bits (147), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 74/160 (46%), Gaps = 26/160 (16%)
Query: 71 HPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEE-NFDSLLVAKDHVSRSKND 129
HP+ ML + + + F + + P V E+ NFD+L DH +R + D
Sbjct: 110 HPIIMLAEHVADTFIA----------MGWELAEGPEVETEQFNFDALNFPADHPARGEQD 159
Query: 130 CYYVNRE---YLLRAHTTAHQ-SELIRMGLDNFVV-FGDVYRRDQIDSTHFPVFHQADGV 184
+Y+ E LLR HT+ Q L+ L +++ G +R D++D+TH P+FHQ +G+
Sbjct: 160 TFYIAPEDSRQLLRTHTSPVQIRTLLARELPVYIISIGRTFRTDELDATHTPIFHQVEGL 219
Query: 185 ---------HLLNR-DQVSRGDIGVGTSLKIMTIFTPTSQ 214
HL D +R + G +I F P ++
Sbjct: 220 AVDRGLSMAHLRGTLDAFARAEFGPSARTRIRPHFFPFTE 259
Score = 45.1 bits (105), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Query: 262 LKNSLVKLAKILFGDDIQMRWISEYFPFTHPSWELEILLNDK-----WVEILGCGVIRHE 316
L+ +L A+ FG + R +FPFT PS E+++ +K WVE GCG++
Sbjct: 230 LRGTLDAFARAEFGPSARTRIRPHFFPFTEPSAEVDVWFANKIGGAAWVEWGGCGMVHPN 289
Query: 317 IL 318
+L
Sbjct: 290 VL 291
>sp|A7HLU6|SYFA_FERNB Phenylalanine--tRNA ligase alpha subunit OS=Fervidobacterium
nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=pheS
PE=3 SV=1
Length = 328
Score = 61.2 bits (147), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 78/151 (51%), Gaps = 18/151 (11%)
Query: 112 NFDSLLVAKDHVSRSKNDCYYVNREYLLRAHTTAHQ--SELIRMGLDNFVVFGDVYRRDQ 169
NFD+L + H +R ++D +Y++ E+LLR HT+ Q + L R V G VYRRD
Sbjct: 142 NFDALNTPEWHPARDEHDSFYIDNEHLLRTHTSPVQIRTMLSRKPPLAIVSPGRVYRRD- 200
Query: 170 IDSTHFPVFHQADGVHLLNR----------DQVSRGDIGVGTSLKIMTIFTPTSQEYFYI 219
D+TH P+F Q +G+++ + ++ +R +G T +++ F P ++ F +
Sbjct: 201 YDATHLPMFTQMEGLYVDHDVTVKHLKYFLEEFARRLLGENTKIRLRPSFFPFTEPSFEV 260
Query: 220 KKC--NKISESIGQNIV---IFEQGGVHTDE 245
N+ E +G +V +F+ G +E
Sbjct: 261 DIYFNNRWFEVLGSGMVHPNVFKNVGYDPEE 291
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 36/52 (69%)
Query: 262 LKNSLVKLAKILFGDDIQMRWISEYFPFTHPSWELEILLNDKWVEILGCGVI 313
LK L + A+ L G++ ++R +FPFT PS+E++I N++W E+LG G++
Sbjct: 226 LKYFLEEFARRLLGENTKIRLRPSFFPFTEPSFEVDIYFNNRWFEVLGSGMV 277
>sp|C1ANS2|SYFA_MYCBT Phenylalanine--tRNA ligase alpha subunit OS=Mycobacterium bovis
(strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=pheS
PE=3 SV=1
Length = 341
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 74/160 (46%), Gaps = 26/160 (16%)
Query: 71 HPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEE-NFDSLLVAKDHVSRSKND 129
HP+ ML + + + F + + P V E+ NFD+L DH +R + D
Sbjct: 110 HPIIMLAEHVADTFIA----------MGWELAEGPEVETEQFNFDALNFPADHPARGEQD 159
Query: 130 CYYVNRE---YLLRAHTTAHQ-SELIRMGLDNFVV-FGDVYRRDQIDSTHFPVFHQADGV 184
+Y+ E LLR HT+ Q L+ L +++ G +R D++D+TH P+FHQ +G+
Sbjct: 160 TFYIAPEDSRQLLRTHTSPVQIRTLLARELPVYIISIGRTFRTDELDATHTPIFHQVEGL 219
Query: 185 ---------HLLNR-DQVSRGDIGVGTSLKIMTIFTPTSQ 214
HL D +R + G +I F P ++
Sbjct: 220 AVDRGLSMAHLRGTLDAFARAEFGPSARTRIRPHFFPFTE 259
Score = 45.1 bits (105), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Query: 262 LKNSLVKLAKILFGDDIQMRWISEYFPFTHPSWELEILLNDK-----WVEILGCGVIRHE 316
L+ +L A+ FG + R +FPFT PS E+++ +K WVE GCG++
Sbjct: 230 LRGTLDAFARAEFGPSARTRIRPHFFPFTEPSAEVDVWFANKIGGADWVEWGGCGMVHPN 289
Query: 317 IL 318
+L
Sbjct: 290 VL 291
>sp|A1KJ66|SYFA_MYCBP Phenylalanine--tRNA ligase alpha subunit OS=Mycobacterium bovis
(strain BCG / Pasteur 1173P2) GN=pheS PE=3 SV=1
Length = 341
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 74/160 (46%), Gaps = 26/160 (16%)
Query: 71 HPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEE-NFDSLLVAKDHVSRSKND 129
HP+ ML + + + F + + P V E+ NFD+L DH +R + D
Sbjct: 110 HPIIMLAEHVADTFIA----------MGWELAEGPEVETEQFNFDALNFPADHPARGEQD 159
Query: 130 CYYVNRE---YLLRAHTTAHQ-SELIRMGLDNFVV-FGDVYRRDQIDSTHFPVFHQADGV 184
+Y+ E LLR HT+ Q L+ L +++ G +R D++D+TH P+FHQ +G+
Sbjct: 160 TFYIAPEDSRQLLRTHTSPVQIRTLLARELPVYIISIGRTFRTDELDATHTPIFHQVEGL 219
Query: 185 ---------HLLNR-DQVSRGDIGVGTSLKIMTIFTPTSQ 214
HL D +R + G +I F P ++
Sbjct: 220 AVDRGLSMAHLRGTLDAFARAEFGPSARTRIRPHFFPFTE 259
Score = 45.1 bits (105), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Query: 262 LKNSLVKLAKILFGDDIQMRWISEYFPFTHPSWELEILLNDK-----WVEILGCGVIRHE 316
L+ +L A+ FG + R +FPFT PS E+++ +K WVE GCG++
Sbjct: 230 LRGTLDAFARAEFGPSARTRIRPHFFPFTEPSAEVDVWFANKIGGADWVEWGGCGMVHPN 289
Query: 317 IL 318
+L
Sbjct: 290 VL 291
>sp|Q7VEV4|SYFA_MYCBO Phenylalanine--tRNA ligase alpha subunit OS=Mycobacterium bovis
(strain ATCC BAA-935 / AF2122/97) GN=pheS PE=3 SV=1
Length = 341
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 74/160 (46%), Gaps = 26/160 (16%)
Query: 71 HPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEE-NFDSLLVAKDHVSRSKND 129
HP+ ML + + + F + + P V E+ NFD+L DH +R + D
Sbjct: 110 HPIIMLAEHVADTFIA----------MGWELAEGPEVETEQFNFDALNFPADHPARGEQD 159
Query: 130 CYYVNRE---YLLRAHTTAHQ-SELIRMGLDNFVV-FGDVYRRDQIDSTHFPVFHQADGV 184
+Y+ E LLR HT+ Q L+ L +++ G +R D++D+TH P+FHQ +G+
Sbjct: 160 TFYIAPEDSRQLLRTHTSPVQIRTLLARELPVYIISIGRTFRTDELDATHTPIFHQVEGL 219
Query: 185 ---------HLLNR-DQVSRGDIGVGTSLKIMTIFTPTSQ 214
HL D +R + G +I F P ++
Sbjct: 220 AVDRGLSMAHLRGTLDAFARAEFGPSARTRIRPHFFPFTE 259
Score = 45.1 bits (105), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Query: 262 LKNSLVKLAKILFGDDIQMRWISEYFPFTHPSWELEILLNDK-----WVEILGCGVIRHE 316
L+ +L A+ FG + R +FPFT PS E+++ +K WVE GCG++
Sbjct: 230 LRGTLDAFARAEFGPSARTRIRPHFFPFTEPSAEVDVWFANKIGGADWVEWGGCGMVHPN 289
Query: 317 IL 318
+L
Sbjct: 290 VL 291
>sp|B1L0T0|SYFA_CLOBM Phenylalanine--tRNA ligase alpha subunit OS=Clostridium botulinum
(strain Loch Maree / Type A3) GN=pheS PE=3 SV=1
Length = 339
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 67/124 (54%), Gaps = 23/124 (18%)
Query: 69 KYHPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEE-NFDSLLVAKDHVSRSK 127
K HPL + + + + F S +G F+I + P V ++E NF++L + K+H +R +
Sbjct: 106 KRHPLDLTLESMKDIFIS--MG------FTIEEG--PEVELDEYNFEALNIPKNHPARGE 155
Query: 128 NDCYYVNREYLLRAHTTA-------HQSELIRMGLDNFVVFGDVYRRDQIDSTHFPVFHQ 180
D +Y+N +LR T+ +Q I+M + G VYR D +D+TH P+F+Q
Sbjct: 156 QDTFYINDNLVLRTQTSPIQIRTMENQKPPIKM-----IAPGKVYRSDSVDATHSPIFYQ 210
Query: 181 ADGV 184
+G+
Sbjct: 211 MEGL 214
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 12/69 (17%)
Query: 262 LKNSLVKLAKILFGDDIQMRWISEYFPFTHPSWELE------------ILLNDKWVEILG 309
LK +L AK +FGD ++ ++ +FPFT PS E++ + W+E+LG
Sbjct: 225 LKGTLELFAKRMFGDKVKTKFRPHHFPFTEPSAEMDATCFVCNGEGCKVCKGSGWIELLG 284
Query: 310 CGVIRHEIL 318
CG++ ++L
Sbjct: 285 CGMVHPQVL 293
>sp|A6LTR7|SYFA_CLOB8 Phenylalanine--tRNA ligase alpha subunit OS=Clostridium
beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=pheS
PE=3 SV=1
Length = 339
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 64/124 (51%), Gaps = 23/124 (18%)
Query: 69 KYHPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEE-NFDSLLVAKDHVSRSK 127
K HPL + Q + F S +G F+I D P V + NF++L + KDH +RS+
Sbjct: 106 KRHPLDLTLQSMEEIFVS--MG------FTIEDG--PEVEYDHYNFEALNIPKDHPARSE 155
Query: 128 NDCYYVNREYLLRAHTTA-------HQSELIRMGLDNFVVFGDVYRRDQIDSTHFPVFHQ 180
D Y+N +LR T+ +Q I+M + G VYR D +D+TH P+F+Q
Sbjct: 156 QDTLYINDNIVLRTQTSPIQVRTMENQKPPIKM-----ISPGKVYRSDSVDATHSPIFYQ 210
Query: 181 ADGV 184
+G+
Sbjct: 211 MEGL 214
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 12/69 (17%)
Query: 262 LKNSLVKLAKILFGDDIQMRWISEYFPFTHPSWELE------------ILLNDKWVEILG 309
LK +L AK +FGD +Q ++ +FPFT PS E++ + W+E+LG
Sbjct: 225 LKGTLELFAKKMFGDKVQTKFRPHHFPFTEPSAEMDATCFVCGGEGCRVCKGSGWIELLG 284
Query: 310 CGVIRHEIL 318
CG++ +L
Sbjct: 285 CGMVHPNVL 293
>sp|Q0AY00|SYFA_SYNWW Phenylalanine--tRNA ligase alpha subunit OS=Syntrophomonas wolfei
subsp. wolfei (strain Goettingen) GN=pheS PE=3 SV=1
Length = 340
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 49/82 (59%), Gaps = 5/82 (6%)
Query: 112 NFDSLLVAKDHVSRSKNDCYYVNREYLLRAHTTAHQSELI-RMGLD---NFVVFGDVYRR 167
NF++L V +DH +R D +Y++ E LLR HT+ Q + +M +V G VYR+
Sbjct: 140 NFEALNVPRDHPARDMQDSFYISEELLLRTHTSPVQVRTMEKMAPQIPIKIIVPGKVYRK 199
Query: 168 DQIDSTHFPVFHQADGVHLLNR 189
D D+TH P+FHQ +G+ + R
Sbjct: 200 DD-DATHSPMFHQVEGLVIGQR 220
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 12/69 (17%)
Query: 262 LKNSLVKLAKILFGDDIQMRWISEYFPFTHPSWELEI------------LLNDKWVEILG 309
LK +LV+ A +FG+D+ +R+ +FPFT PS E++I + W+EILG
Sbjct: 226 LKGTLVRFAHQVFGEDVTVRYRPSFFPFTEPSAEMDISCVMCQGEGCRVCSHTGWLEILG 285
Query: 310 CGVIRHEIL 318
G++ +L
Sbjct: 286 AGMVNPRVL 294
>sp|B6J7X7|SYFA_COXB1 Phenylalanine--tRNA ligase alpha subunit OS=Coxiella burnetii
(strain CbuK_Q154) GN=pheS PE=3 SV=1
Length = 329
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 64/122 (52%), Gaps = 14/122 (11%)
Query: 66 HNKKYHPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEE-NFDSLLVAKDHVS 124
H HP+ + +R+ F +G F I + P + E NF++L + DH +
Sbjct: 103 HLGAIHPISRVSERVSQLF--SMLG------FQIAEG--PEIENEYYNFEALNIPADHPA 152
Query: 125 RSKNDCYYVNREYLLRAHTTAHQ-SELIRMGLD-NFVVFGDVYRRDQIDSTHFPVFHQAD 182
R+ D +Y + + LLR HT+ Q E+ + G+ + G VYRRD +D TH P+FHQ +
Sbjct: 153 RTMADTFYFSGDKLLRTHTSPVQIREMEKQGVPIRLIALGRVYRRD-LDQTHTPMFHQVE 211
Query: 183 GV 184
G+
Sbjct: 212 GL 213
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 262 LKNSLVKLAKILFGDDIQMRWISEYFPFTHPSWELEIL--LNDKWVEILGCGVIRHEIL 318
LK L + F D+++R+ YFPFT PS E++I DKW+E+LGCG++ +L
Sbjct: 224 LKGLLQQFLNCFFEKDVRLRFRPSYFPFTEPSAEVDIYQPRTDKWLEVLGCGMVHPNVL 282
>sp|Q83C14|SYFA_COXBU Phenylalanine--tRNA ligase alpha subunit OS=Coxiella burnetii
(strain RSA 493 / Nine Mile phase I) GN=pheS PE=3 SV=1
Length = 328
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 64/122 (52%), Gaps = 14/122 (11%)
Query: 66 HNKKYHPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEE-NFDSLLVAKDHVS 124
H HP+ + +R+ F +G F I + P + E NF++L + DH +
Sbjct: 103 HLGAIHPISRVSERVSQLF--SMLG------FQIAEG--PEIENEYYNFEALNIPADHPA 152
Query: 125 RSKNDCYYVNREYLLRAHTTAHQ-SELIRMGLD-NFVVFGDVYRRDQIDSTHFPVFHQAD 182
R+ D +Y + + LLR HT+ Q E+ + G+ + G VYRRD +D TH P+FHQ +
Sbjct: 153 RTMADTFYFSGDKLLRTHTSPVQIREMEKQGVPIRLIALGRVYRRD-LDQTHTPMFHQVE 211
Query: 183 GV 184
G+
Sbjct: 212 GL 213
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 262 LKNSLVKLAKILFGDDIQMRWISEYFPFTHPSWELEIL--LNDKWVEILGCGVIRHEIL 318
LK L + F D+++R+ YFPFT PS E++I DKW+E+LGCG++ +L
Sbjct: 224 LKGLLQQFLNCFFEKDVRLRFRPSYFPFTEPSAEVDIYQPRTDKWLEVLGCGMVHPNVL 282
>sp|A9N8K1|SYFA_COXBR Phenylalanine--tRNA ligase alpha subunit OS=Coxiella burnetii
(strain RSA 331 / Henzerling II) GN=pheS PE=3 SV=1
Length = 328
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 64/122 (52%), Gaps = 14/122 (11%)
Query: 66 HNKKYHPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEE-NFDSLLVAKDHVS 124
H HP+ + +R+ F +G F I + P + E NF++L + DH +
Sbjct: 103 HLGAIHPISRVSERVSQLF--SMLG------FQIAEG--PEIENEYYNFEALNIPADHPA 152
Query: 125 RSKNDCYYVNREYLLRAHTTAHQ-SELIRMGLD-NFVVFGDVYRRDQIDSTHFPVFHQAD 182
R+ D +Y + + LLR HT+ Q E+ + G+ + G VYRRD +D TH P+FHQ +
Sbjct: 153 RTMADTFYFSGDKLLRTHTSPVQIREMEKQGVPIRLIALGRVYRRD-LDQTHTPMFHQVE 211
Query: 183 GV 184
G+
Sbjct: 212 GL 213
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 262 LKNSLVKLAKILFGDDIQMRWISEYFPFTHPSWELEIL--LNDKWVEILGCGVIRHEIL 318
LK L + F D+++R+ YFPFT PS E++I DKW+E+LGCG++ +L
Sbjct: 224 LKGLLQQFLNCFFEKDVRLRFRPSYFPFTEPSAEVDIYQPRTDKWLEVLGCGMVHPNVL 282
>sp|A9KGB7|SYFA_COXBN Phenylalanine--tRNA ligase alpha subunit OS=Coxiella burnetii
(strain Dugway 5J108-111) GN=pheS PE=3 SV=1
Length = 328
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 64/122 (52%), Gaps = 14/122 (11%)
Query: 66 HNKKYHPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEE-NFDSLLVAKDHVS 124
H HP+ + +R+ F +G F I + P + E NF++L + DH +
Sbjct: 103 HLGAIHPISRVSERVSQLF--SMLG------FQIAEG--PEIENEYYNFEALNIPADHPA 152
Query: 125 RSKNDCYYVNREYLLRAHTTAHQ-SELIRMGLD-NFVVFGDVYRRDQIDSTHFPVFHQAD 182
R+ D +Y + + LLR HT+ Q E+ + G+ + G VYRRD +D TH P+FHQ +
Sbjct: 153 RTMADTFYFSGDKLLRTHTSPVQIREMEKQGVPIRLIALGRVYRRD-LDQTHTPMFHQVE 211
Query: 183 GV 184
G+
Sbjct: 212 GL 213
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 262 LKNSLVKLAKILFGDDIQMRWISEYFPFTHPSWELEIL--LNDKWVEILGCGVIRHEIL 318
LK L + F D+++R+ YFPFT PS E++I DKW+E+LGCG++ +L
Sbjct: 224 LKGLLQQFLNCFFEKDVRLRFRPSYFPFTEPSAEVDIYQPRTDKWLEVLGCGMVHPNVL 282
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.138 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 121,642,260
Number of Sequences: 539616
Number of extensions: 5067169
Number of successful extensions: 15101
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 167
Number of HSP's that attempted gapping in prelim test: 12783
Number of HSP's gapped (non-prelim): 1374
length of query: 320
length of database: 191,569,459
effective HSP length: 117
effective length of query: 203
effective length of database: 128,434,387
effective search space: 26072180561
effective search space used: 26072180561
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (28.1 bits)