Query psy7414
Match_columns 320
No_of_seqs 183 out of 1239
Neff 4.8
Searched_HMMs 46136
Date Fri Aug 16 17:41:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7414.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7414hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00469 pheS_mito phenylalan 100.0 1.8E-88 3.9E-93 674.4 22.2 271 34-320 4-305 (460)
2 KOG2783|consensus 100.0 1.6E-78 3.6E-83 587.3 14.1 252 35-320 36-288 (436)
3 PLN02788 phenylalanine-tRNA sy 100.0 3.2E-77 7E-82 588.0 19.7 224 36-320 26-256 (402)
4 COG0016 PheS Phenylalanyl-tRNA 100.0 3.8E-68 8.2E-73 512.5 16.6 186 59-320 99-292 (335)
5 PRK00488 pheS phenylalanyl-tRN 100.0 4.1E-64 8.9E-69 485.8 15.8 186 59-320 96-295 (339)
6 PLN02853 Probable phenylalanyl 100.0 1.1E-63 2.3E-68 500.8 17.8 197 47-320 195-440 (492)
7 PTZ00326 phenylalanyl-tRNA syn 100.0 6.7E-60 1.4E-64 474.6 17.3 199 45-320 201-455 (494)
8 PF01409 tRNA-synt_2d: tRNA sy 100.0 2E-59 4.3E-64 436.5 13.1 187 58-320 4-204 (247)
9 TIGR00468 pheS phenylalanyl-tR 100.0 9E-41 2E-45 317.5 15.9 185 59-320 60-249 (294)
10 KOG2784|consensus 100.0 5.8E-41 1.3E-45 324.8 9.9 185 58-319 199-430 (483)
11 PRK04172 pheS phenylalanyl-tRN 100.0 6.2E-39 1.3E-43 323.0 18.3 187 55-319 217-446 (489)
12 TIGR00470 sepS O-phosphoseryl- 99.9 6.9E-28 1.5E-32 241.1 10.2 114 136-320 182-310 (533)
13 cd00496 PheRS_alpha_core Pheny 99.8 2.6E-18 5.7E-23 156.5 16.2 174 71-320 1-180 (218)
14 TIGR02367 PylS pyrrolysyl-tRNA 99.4 2.8E-12 6E-17 128.9 13.2 110 66-187 235-350 (453)
15 PRK09537 pylS pyrolysyl-tRNA s 99.1 5.4E-10 1.2E-14 112.0 10.5 110 65-186 198-313 (417)
16 PRK09616 pheT phenylalanyl-tRN 99.1 1.9E-09 4.2E-14 111.0 13.8 180 49-319 341-530 (552)
17 cd00768 class_II_aaRS-like_cor 99.0 3.7E-09 8.1E-14 92.2 12.0 169 74-319 3-183 (211)
18 PRK06253 O-phosphoseryl-tRNA s 98.3 1E-06 2.3E-11 90.5 6.9 114 137-319 184-310 (529)
19 cd00669 Asp_Lys_Asn_RS_core As 98.2 1.7E-05 3.7E-10 75.3 11.3 95 74-187 5-101 (269)
20 cd00670 Gly_His_Pro_Ser_Thr_tR 98.2 4.7E-05 1E-09 68.6 13.5 165 75-313 3-197 (235)
21 PRK09350 poxB regulator PoxA; 97.9 4.4E-05 9.6E-10 73.6 8.2 96 75-187 10-110 (306)
22 PTZ00417 lysine-tRNA ligase; P 97.9 8.3E-05 1.8E-09 77.9 10.6 95 76-187 259-353 (585)
23 TIGR00471 pheT_arch phenylalan 97.7 0.00065 1.4E-08 70.5 13.3 180 49-320 344-533 (551)
24 PRK12445 lysyl-tRNA synthetase 97.4 0.0011 2.4E-08 68.4 11.1 56 132-187 229-284 (505)
25 PRK00484 lysS lysyl-tRNA synth 97.4 0.0015 3.3E-08 67.1 11.2 56 132-187 217-272 (491)
26 PLN02502 lysyl-tRNA synthetase 97.3 0.00079 1.7E-08 70.3 9.1 56 132-187 274-329 (553)
27 PRK06462 asparagine synthetase 97.3 0.0015 3.3E-08 63.9 10.2 52 134-187 82-137 (335)
28 TIGR00499 lysS_bact lysyl-tRNA 97.2 0.0011 2.5E-08 68.2 8.6 55 133-187 218-272 (496)
29 TIGR00462 genX lysyl-tRNA synt 97.2 0.00087 1.9E-08 64.7 6.9 99 74-187 5-105 (304)
30 cd00777 AspRS_core Asp tRNA sy 97.2 0.0043 9.3E-08 59.4 11.4 95 74-187 5-101 (280)
31 cd00775 LysRS_core Lys_tRNA sy 97.1 0.0034 7.3E-08 61.3 10.5 52 134-187 55-108 (329)
32 PRK02983 lysS lysyl-tRNA synth 97.1 0.0015 3.2E-08 73.1 8.9 56 132-187 815-870 (1094)
33 PF00152 tRNA-synt_2: tRNA syn 97.1 0.0024 5.1E-08 61.8 8.7 46 142-187 78-126 (335)
34 PRK05159 aspC aspartyl-tRNA sy 97.0 0.0034 7.4E-08 63.5 9.7 56 132-187 179-235 (437)
35 PTZ00385 lysyl-tRNA synthetase 97.0 0.0042 9.1E-08 66.2 10.4 55 133-187 279-333 (659)
36 TIGR00458 aspS_arch aspartyl-t 97.0 0.0054 1.2E-07 62.0 10.5 54 132-187 176-232 (428)
37 cd00776 AsxRS_core Asx tRNA sy 97.0 0.0063 1.4E-07 59.2 10.5 55 132-187 67-122 (322)
38 PRK00037 hisS histidyl-tRNA sy 96.8 0.0026 5.6E-08 62.8 6.7 113 63-188 11-131 (412)
39 TIGR00459 aspS_bact aspartyl-t 96.7 0.015 3.3E-07 61.2 11.3 45 143-187 192-238 (583)
40 TIGR00457 asnS asparaginyl-tRN 96.6 0.013 2.8E-07 59.8 10.0 39 149-187 204-243 (453)
41 PRK03932 asnC asparaginyl-tRNA 96.5 0.019 4.1E-07 58.5 10.5 39 149-187 201-240 (450)
42 COG2024 Phenylalanyl-tRNA synt 96.3 0.003 6.6E-08 63.6 3.3 52 136-187 182-240 (536)
43 TIGR00442 hisS histidyl-tRNA s 96.3 0.01 2.2E-07 58.4 6.8 112 64-188 8-130 (397)
44 PRK00476 aspS aspartyl-tRNA sy 96.2 0.035 7.5E-07 58.6 10.6 92 76-187 147-241 (588)
45 PLN02903 aminoacyl-tRNA ligase 96.0 0.057 1.2E-06 57.7 11.2 45 143-187 258-304 (652)
46 PRK12820 bifunctional aspartyl 95.9 0.047 1E-06 58.8 10.3 45 143-187 210-256 (706)
47 COG2269 Truncated, possibly in 95.8 0.013 2.7E-07 57.2 4.7 95 75-187 21-121 (322)
48 PLN02603 asparaginyl-tRNA synt 95.7 0.1 2.3E-06 54.9 11.5 40 148-187 314-354 (565)
49 PLN02265 probable phenylalanyl 95.4 0.13 2.8E-06 54.3 11.0 184 49-320 379-579 (597)
50 cd00770 SerRS_core Seryl-tRNA 95.2 0.27 5.9E-06 47.3 11.7 106 70-186 47-169 (297)
51 KOG1885|consensus 95.2 0.0049 1.1E-07 63.3 -0.3 52 136-187 274-325 (560)
52 PF00587 tRNA-synt_2b: tRNA sy 95.0 0.12 2.6E-06 45.1 8.0 52 136-187 56-118 (173)
53 cd00773 HisRS-like_core Class 94.5 0.15 3.2E-06 47.6 7.7 98 74-186 6-113 (261)
54 PTZ00401 aspartyl-tRNA synthet 94.2 0.13 2.9E-06 53.9 7.3 51 132-184 256-309 (550)
55 PRK00960 seryl-tRNA synthetase 94.0 0.78 1.7E-05 48.0 12.5 110 73-187 222-371 (517)
56 TIGR00414 serS seryl-tRNA synt 93.8 0.68 1.5E-05 46.9 11.3 100 74-186 173-290 (418)
57 cd00779 ProRS_core_prok Prolyl 93.6 0.38 8.2E-06 45.2 8.5 103 75-187 32-148 (255)
58 COG1190 LysU Lysyl-tRNA synthe 93.4 0.041 8.9E-07 57.0 1.9 55 133-187 226-280 (502)
59 PLN02850 aspartate-tRNA ligase 92.8 0.28 6.1E-06 51.3 7.0 54 132-187 268-324 (530)
60 cd00772 ProRS_core Prolyl-tRNA 92.6 5.5 0.00012 37.7 14.8 52 135-186 92-153 (264)
61 PRK05431 seryl-tRNA synthetase 91.9 1.3 2.9E-05 44.9 10.4 104 73-186 169-288 (425)
62 PLN02532 asparagine-tRNA synth 91.0 0.47 1E-05 50.8 6.3 54 133-187 368-422 (633)
63 PLN02678 seryl-tRNA synthetase 90.9 2.3 5E-05 43.8 11.0 104 72-187 172-294 (448)
64 PLN02221 asparaginyl-tRNA synt 90.6 0.64 1.4E-05 49.2 6.8 39 149-187 320-359 (572)
65 PTZ00425 asparagine-tRNA ligas 88.3 1.2 2.6E-05 47.3 6.8 39 149-187 337-376 (586)
66 COG0072 PheT Phenylalanyl-tRNA 85.2 4.5 9.8E-05 43.4 9.2 188 49-320 331-529 (650)
67 cd00769 PheRS_beta_core Phenyl 85.2 1.7 3.6E-05 39.0 5.1 56 259-319 123-180 (198)
68 cd00771 ThrRS_core Threonyl-tR 85.0 4.1 9E-05 39.1 8.1 105 74-189 30-149 (298)
69 cd00778 ProRS_core_arch_euk Pr 84.8 8.9 0.00019 36.1 10.0 54 255-310 160-218 (261)
70 PRK04173 glycyl-tRNA synthetas 83.5 3.3 7.2E-05 42.4 7.1 47 264-311 235-288 (456)
71 TIGR00443 hisZ_biosyn_reg ATP 82.5 3.3 7.2E-05 39.8 6.3 98 74-187 12-119 (314)
72 PRK12295 hisZ ATP phosphoribos 81.7 4.7 0.0001 40.3 7.2 97 73-187 7-111 (373)
73 PLN02972 Histidyl-tRNA synthet 81.2 4.4 9.5E-05 44.5 7.2 96 76-187 347-449 (763)
74 PLN02320 seryl-tRNA synthetase 81.2 28 0.0006 36.7 12.8 33 155-187 313-352 (502)
75 PRK12292 hisZ ATP phosphoribos 80.1 3.4 7.5E-05 41.1 5.6 99 74-188 21-130 (391)
76 PRK12420 histidyl-tRNA synthet 79.2 6.9 0.00015 39.3 7.5 102 73-187 21-131 (423)
77 CHL00201 syh histidine-tRNA sy 79.0 6.6 0.00014 39.7 7.3 102 73-187 21-134 (430)
78 PRK12293 hisZ ATP phosphoribos 78.9 5 0.00011 38.5 6.1 89 73-186 22-120 (281)
79 TIGR00408 proS_fam_I prolyl-tR 78.3 15 0.00032 37.8 9.7 100 76-184 40-157 (472)
80 PRK12444 threonyl-tRNA synthet 77.1 38 0.00082 36.0 12.6 103 76-188 276-392 (639)
81 PLN02530 histidine-tRNA ligase 76.6 6.2 0.00014 40.6 6.4 102 74-186 84-195 (487)
82 TIGR00415 serS_MJ seryl-tRNA s 76.5 55 0.0012 34.7 13.2 29 157-187 337-371 (520)
83 PRK12294 hisZ ATP phosphoribos 76.5 7.3 0.00016 37.5 6.5 92 73-188 10-109 (272)
84 PRK09194 prolyl-tRNA synthetas 76.3 87 0.0019 32.9 14.8 107 70-187 42-164 (565)
85 PRK12305 thrS threonyl-tRNA sy 72.9 8.7 0.00019 40.0 6.5 105 74-188 206-325 (575)
86 PRK12421 ATP phosphoribosyltra 72.8 7.6 0.00017 38.9 5.8 102 70-187 21-133 (392)
87 PF13393 tRNA-synt_His: Histid 71.9 5.9 0.00013 37.5 4.6 99 75-190 15-122 (311)
88 PRK08661 prolyl-tRNA synthetas 64.5 65 0.0014 33.3 10.6 106 70-186 39-164 (477)
89 KOG2411|consensus 60.5 14 0.0003 39.1 4.9 58 123-187 220-279 (628)
90 COG0173 AspS Aspartyl-tRNA syn 58.2 35 0.00076 36.5 7.4 58 123-187 182-241 (585)
91 TIGR00418 thrS threonyl-tRNA s 56.5 36 0.00078 35.3 7.3 105 74-188 200-319 (563)
92 CHL00192 syfB phenylalanyl-tRN 53.4 20 0.00044 38.8 5.0 56 259-319 516-576 (704)
93 PRK00413 thrS threonyl-tRNA sy 53.2 41 0.00088 35.5 7.1 104 74-187 270-388 (638)
94 PRK00629 pheT phenylalanyl-tRN 52.8 24 0.00051 38.7 5.4 57 259-319 608-665 (791)
95 PRK14894 glycyl-tRNA synthetas 50.3 68 0.0015 34.2 8.0 35 277-311 227-266 (539)
96 TIGR00472 pheT_bact phenylalan 47.3 35 0.00076 37.4 5.7 58 259-319 615-673 (798)
97 cd00774 GlyRS-like_core Glycyl 46.8 42 0.00091 31.4 5.4 108 70-191 27-146 (254)
98 PRK14799 thrS threonyl-tRNA sy 44.3 39 0.00084 35.8 5.2 98 75-188 169-286 (545)
99 PRK07080 hypothetical protein; 41.9 87 0.0019 31.2 6.9 34 157-190 154-188 (317)
100 COG0172 SerS Seryl-tRNA synthe 40.3 4.5E+02 0.0097 27.4 12.8 107 70-188 170-293 (429)
101 PLN02908 threonyl-tRNA synthet 35.6 3.5E+02 0.0077 29.3 10.9 107 74-190 321-441 (686)
102 KOG1936|consensus 32.3 28 0.00061 36.4 1.9 50 137-186 129-183 (518)
103 COG0016 PheS Phenylalanyl-tRNA 30.8 17 0.00037 36.3 0.1 150 105-275 83-241 (335)
104 COG0017 AsnS Aspartyl/asparagi 29.1 2.7E+02 0.0058 29.1 8.3 40 148-187 192-232 (435)
105 TIGR00409 proS_fam_II prolyl-t 28.3 4.1E+02 0.0089 28.3 9.8 101 76-187 49-164 (568)
106 PRK12325 prolyl-tRNA synthetas 26.7 2.2E+02 0.0048 29.0 7.3 107 70-186 42-163 (439)
107 PRK03991 threonyl-tRNA synthet 26.5 8.4E+02 0.018 26.3 13.1 104 75-188 228-346 (613)
108 COG0124 HisS Histidyl-tRNA syn 25.0 88 0.0019 32.3 4.0 55 136-190 76-136 (429)
109 KOG0326|consensus 23.2 73 0.0016 32.5 2.9 40 253-293 235-274 (459)
110 PRK00476 aspS aspartyl-tRNA sy 21.2 66 0.0014 34.4 2.4 16 280-295 442-457 (588)
No 1
>TIGR00469 pheS_mito phenylalanyl-tRNA synthetase, mitochondrial. Unlike all other known phenylalanyl-tRNA synthetases, the mitochondrial form demonstrated from yeast is monomeric. It is similar to but longer than the alpha subunit (PheS) of the alpha 2 beta 2 form found in Bacteria, Archaea, and eukaryotes, and shares the characteristic motifs of class II aminoacyl-tRNA ligases. This alignment models the experimental example from Saccharomyces cerevisiae (designated MSF1) and its orthologs from other eukaryotic species.
Probab=100.00 E-value=1.8e-88 Score=674.43 Aligned_cols=271 Identities=43% Similarity=0.732 Sum_probs=234.1
Q ss_pred CCceEEECCeeecCCCCC-CCChhhhccCCCCCCCCCCChHHHHHHHHHHHHhhcccCCCCCCceEEecCCCCeecceec
Q psy7414 34 EKATLTINGKTYHTDDYT-NVTPKILSYLNKNLHNKKYHPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEEN 112 (320)
Q Consensus 34 ~~~~i~~~g~~y~~d~~t-Nvt~~Ils~~gr~l~~~~~HPl~il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~N 112 (320)
.|.+++++|++|++|+|| ||||+|++++||++|.+..|||++++++|+++|.+++.+..|+|+|+++++++||||+++|
T Consensus 4 ~~~~~~~~~~~~~~d~~~~n~~~~i~~~~~r~~~~~~~HPl~~~~~~I~~~F~~~~~~~~~~~gf~v~~~~~Pvvt~~~N 83 (460)
T TIGR00469 4 KPPHLEINGIKYATDGQTTNVTDKIIKLTDANKHLKEDHPLGIIRDLIEKKFNGADNNQRGNPLFKIFDNFKPVVTTMEN 83 (460)
T ss_pred CCCeEEECCeeccCCcccCCCChHHHHhhccCccCCCCCcHHHHHHHHHHHHHhhhcccccCCCeEEeeCCCCccchhhh
Confidence 367899999999999999 9999999999999999999999999999999998876666789999999999999999999
Q ss_pred cccCCCCCCCCCCCCCccccccccccccccCchhhHHHHHcCCC-------eEEEecccccCCCcCCCCCCcceeeeEEE
Q psy7414 113 FDSLLVAKDHVSRSKNDCYYVNREYLLRAHTTAHQSELIRMGLD-------NFVVFGDVYRRDQIDSTHFPVFHQADGVH 185 (320)
Q Consensus 113 FD~L~~P~DHPsR~~~DTyYin~~~lLRTHTSAhq~~~l~~~~~-------~~l~~GdVYRRDeID~tHyPvFHQmEG~~ 185 (320)
||+||||+|||||+++||||||+++||||||||||+++|+++.+ +|+++|||||||+||+|||||||||||++
T Consensus 84 FD~Ln~P~dHPaR~~~DT~Yi~~~~lLRTHTSa~q~~~~~~~~~~~~~~~~~~i~~G~VYRrD~iDatH~p~FHQ~EG~~ 163 (460)
T TIGR00469 84 FDNLGFPADHPGRQKSDCYYINEQHLLRAHTSAHELECFQGGLDDSDNIKSGFLISADVYRRDEIDKTHYPVFHQADGAA 163 (460)
T ss_pred hhhcCCCCCCcccCcccceEecCCceeCCCCcHHHHHHHHhccccCCCcceeeEeecceeeCCCCccccCccceeeEEEE
Confidence 99999999999999999999999999999999999999998753 49999999999999999999999999999
Q ss_pred Eeeccc--cccCccCcccccceecccCCCchhhhhhhh------ccccccccCcceeeeecCCCCCcccccccchhHHHH
Q psy7414 186 LLNRDQ--VSRGDIGVGTSLKIMTIFTPTSQEYFYIKK------CNKISESIGQNIVIFEQGGVHTDEKQARHTLDATKV 257 (320)
Q Consensus 186 v~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~f~~~~~~~~~~q~~h~~~~~~~ 257 (320)
||.+.+ ++++.. +.+++++ ++.+.+++ .++.++|++..+. ..+++|++||.+++++
T Consensus 164 v~~~~~~~~~~~~~--~~~~~~~-------~~~~~~~~~~~~~~~~i~~~~~~~~~~-------~~~~~q~~~~~~~~~~ 227 (460)
T TIGR00469 164 IRKRTKADLFEKEP--GYIEKFE-------EDIRGTEADLNKENVKIILDDDSIPLK-------ENNPKQEYASDLAVDL 227 (460)
T ss_pred Eecccccccccccc--chhhhhh-------hhhhhccccccccCcceeccCcccccc-------cccchhhhccHHHHHH
Confidence 996442 221100 1111111 33333332 2344444332222 5788999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCc---------------cEEEeccCCCCCCCceEEEeeeCCceEEEeecccccccccCC
Q psy7414 258 MEQKLKNSLVKLAKILFGDDI---------------QMRWISEYFPFTHPSWELEILLNDKWVEILGCGVIRHEILDR 320 (320)
Q Consensus 258 v~~~LK~tLe~lv~~lFg~~~---------------~~Rw~~ayFPFTePS~EleV~~~g~WLEvLGCGvv~~~vL~~ 320 (320)
+++|||++|+.|+++|||+++ ++||+|+|||||+||+|+||+|+|+||||||||||+|+||++
T Consensus 228 ~~~~LK~~L~~~~~~lFg~~~~~~~~~~~~~~~~~~~~r~~ps~fPftePs~evdi~~~g~WiEi~gcG~v~p~vl~~ 305 (460)
T TIGR00469 228 CEHELKHSIEGITKDLFGKKISSMIKNKANNTPKELKVRWIDAYFPFTAPSWEIEIWFKDEWLELCGCGIIRHDILLR 305 (460)
T ss_pred HHHHHHHHHHHHHHHHhchhhhhhccccccccCccceEEEEeccCCCCCcceEEEEEECCeeEEEeeeccCcHHHHHH
Confidence 999999999999999999766 999999999999999999999999999999999999999864
No 2
>KOG2783|consensus
Probab=100.00 E-value=1.6e-78 Score=587.29 Aligned_cols=252 Identities=53% Similarity=0.958 Sum_probs=228.5
Q ss_pred CceEEECCeeecCCCCCCCChhhhccCCCCCCCCCCChHHHHHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccc
Q psy7414 35 KATLTINGKTYHTDDYTNVTPKILSYLNKNLHNKKYHPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFD 114 (320)
Q Consensus 35 ~~~i~~~g~~y~~d~~tNvt~~Ils~~gr~l~~~~~HPl~il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD 114 (320)
...+.++|++|.+|.|+|+|++|++++||++|++..|||+++|++|+++|++.+.+ .|++++..+||||++||||
T Consensus 36 v~~~e~~g~~~~~d~~~Nv~~~i~~~~gr~lh~~~~hplg~lr~~i~~~f~~~~~~-----~fs~~~~~spvvt~~qnfd 110 (436)
T KOG2783|consen 36 VSVVELNGKKYATDAWSNVTPSILSLLGRNLHQKESHPLGILRQRIEDYFYKTYRN-----LFSIFENESPVVTTYQNFD 110 (436)
T ss_pred ccceeecceecCCcccccCChhhhhhcccchhhhccCchhHHHHHHHHHHHHhhcc-----cchhccCCCceeehhhhcc
Confidence 46799999999999999999999999999999999999999999999999886532 6999999999999999999
Q ss_pred cCCCCCCCCCCCCCccccccccccccccCchhhHHHHHcCCCeEEEecccccCCCcCCCCCCcceeeeEEEEeecccccc
Q psy7414 115 SLLVAKDHVSRSKNDCYYVNREYLLRAHTTAHQSELIRMGLDNFVVFGDVYRRDQIDSTHFPVFHQADGVHLLNRDQVSR 194 (320)
Q Consensus 115 ~L~~P~DHPsR~~~DTyYin~~~lLRTHTSAhq~~~l~~~~~~~l~~GdVYRRDeID~tHyPvFHQmEG~~v~~~~~l~~ 194 (320)
+|++|+|||+|+++||||+|..++||+||||||+++|+.|+++|+++|||||||+||+||||+||||||+++|++++++.
T Consensus 111 sl~~p~dh~sr~ksdtyy~n~~~~lr~htsahq~e~~~~~~~~flv~~DVyrrdeidsthypvfhq~eg~~~~s~~~l~~ 190 (436)
T KOG2783|consen 111 SLLFPADHVSRSKSDTYYVNHTHCLRAHTSAHQHELFQKGLDGFLVTGDVYRRDEIDSTHYPVFHQMEGVRLWSKDELFG 190 (436)
T ss_pred cccCcccccccCcCCceeecceeeehhcchhhHHHHHHhcccccceeeeeeeeccccccccceeccccceeEEecchhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred CccCcccccceecccCCCchhhhhhhhcccccccc-CcceeeeecCCCCCcccccccchhHHHHHHHHHHHHHHHHHHHH
Q psy7414 195 GDIGVGTSLKIMTIFTPTSQEYFYIKKCNKISESI-GQNIVIFEQGGVHTDEKQARHTLDATKVMEQKLKNSLVKLAKIL 273 (320)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~f~~~~~~~~~~q~~h~~~~~~~v~~~LK~tLe~lv~~l 273 (320)
.+.+ . ..+.+.. ..+.. .+.+.||++|++|++++++.|||.+|+.++++|
T Consensus 191 ~~~d-~----------------------~~ve~~~~~s~~~------~~~~~kq~~~t~e~~~~~~~~lk~~l~~L~~~L 241 (436)
T KOG2783|consen 191 KKPD-G----------------------KNVAELFSGSSAT------LRSPNKQEKHTLEATKLAEQHLKQTLEGLCDEL 241 (436)
T ss_pred cccc-c----------------------cceeccccccccc------cccccccccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 4432 1 1111110 01111 245569999999999999999999999999999
Q ss_pred hCCCccEEEeccCCCCCCCceEEEeeeCCceEEEeecccccccccCC
Q psy7414 274 FGDDIQMRWISEYFPFTHPSWELEILLNDKWVEILGCGVIRHEILDR 320 (320)
Q Consensus 274 Fg~~~~~Rw~~ayFPFTePS~EleV~~~g~WLEvLGCGvv~~~vL~~ 320 (320)
||..+++||+++|||||.|||||||+|.|+|||+||||||++.||++
T Consensus 242 f~~~~~~rwV~~yfpft~ps~eleI~~~~~wlevlgcgvi~~~il~~ 288 (436)
T KOG2783|consen 242 FGKEVEYRWVDAYFPFTHPSWELEIYFKGEWLEVLGCGVMRQRLLKR 288 (436)
T ss_pred ccchhheeheeeEcccCCCCeEEEEEecCCcHhhhccchhHHHHHhh
Confidence 99999999999999999999999999999999999999999999863
No 3
>PLN02788 phenylalanine-tRNA synthetase
Probab=100.00 E-value=3.2e-77 Score=587.96 Aligned_cols=224 Identities=47% Similarity=0.888 Sum_probs=201.3
Q ss_pred ceEEECCeeecCCC-------CCCCChhhhccCCCCCCCCCCChHHHHHHHHHHHHhhcccCCCCCCceEEecCCCCeec
Q psy7414 36 ATLTINGKTYHTDD-------YTNVTPKILSYLNKNLHNKKYHPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVT 108 (320)
Q Consensus 36 ~~i~~~g~~y~~d~-------~tNvt~~Ils~~gr~l~~~~~HPl~il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs 108 (320)
..++++|++|.+|+ ||||||+|++++||+||.++.|||++++++|+++|.+++ .++|+++++++|||+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~n~~~~i~~~~~~~l~~~~~HPl~~~~~~i~~~f~~~~-----~~gf~~~~~~~~iv~ 100 (402)
T PLN02788 26 SAVEIGGVAIARDEVVREDDPTNNVPDHIFSKIGMQLHRRPDHPLGILKNAIYDYFDENY-----SNKFKKFDDLSPIVS 100 (402)
T ss_pred eEEeecCcccccCcccccCCccCCCChhHhccCCccCCCCCCChHHHHHHHHHHHHhhcc-----cCCcEEecCCCCccc
Confidence 35677777777776 999999999999999999999999999999999997532 124999999999999
Q ss_pred ceeccccCCCCCCCCCCCCCccccccccccccccCchhhHHHHHcCCCeEEEecccccCCCcCCCCCCcceeeeEEEEee
Q psy7414 109 VEENFDSLLVAKDHVSRSKNDCYYVNREYLLRAHTTAHQSELIRMGLDNFVVFGDVYRRDQIDSTHFPVFHQADGVHLLN 188 (320)
Q Consensus 109 ~~~NFD~L~~P~DHPsR~~~DTyYin~~~lLRTHTSAhq~~~l~~~~~~~l~~GdVYRRDeID~tHyPvFHQmEG~~v~~ 188 (320)
++||||+||+|+|||||+++||||||+++||||||||||+++|+++..+++++|+|||||+||+||||+||||||++||+
T Consensus 101 ~~~NFD~L~~P~dHPaR~~~DTfy~~~~~lLRTHTSa~q~~~l~~~~~~~~~~g~VyRrD~iD~tH~p~FhQ~EG~~v~~ 180 (402)
T PLN02788 101 TKQNFDDVLVPPDHVSRSYNDTYYVDAQTVLRCHTSAHQAELLRAGHTHFLVTGDVYRRDSIDATHYPVFHQMEGVRVFS 180 (402)
T ss_pred hhhhhhhhCCCCCCCccCccceEEecCCccccCCCcHHHHHHHHhCCCcEEEEeeEeecCCCCcccCccceeEEEEEEec
Confidence 99999999999999999999999999999999999999999999998999999999999999999999999999999997
Q ss_pred ccccccCccCcccccceecccCCCchhhhhhhhccccccccCcceeeeecCCCCCcccccccchhHHHHHHHHHHHHHHH
Q psy7414 189 RDQVSRGDIGVGTSLKIMTIFTPTSQEYFYIKKCNKISESIGQNIVIFEQGGVHTDEKQARHTLDATKVMEQKLKNSLVK 268 (320)
Q Consensus 189 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~q~~h~~~~~~~v~~~LK~tLe~ 268 (320)
++++.. ++ +++.++.++|||++|+.
T Consensus 181 ~~~~~~--~~-----------------------------------------------------~~~~~~~~~dLKg~Le~ 205 (402)
T PLN02788 181 PEEWEA--SG-----------------------------------------------------LDGTDLAAEDLKKTLEG 205 (402)
T ss_pred cccccc--cc-----------------------------------------------------ccccccCHHHHHHHHHH
Confidence 765432 10 11122335899999999
Q ss_pred HHHHHhCCCccEEEeccCCCCCCCceEEEeeeCCceEEEeecccccccccCC
Q psy7414 269 LAKILFGDDIQMRWISEYFPFTHPSWELEILLNDKWVEILGCGVIRHEILDR 320 (320)
Q Consensus 269 lv~~lFg~~~~~Rw~~ayFPFTePS~EleV~~~g~WLEvLGCGvv~~~vL~~ 320 (320)
|++.+||. .++||+++|||||+||+|++|+++|+|||++|||+++|+||++
T Consensus 206 l~~~lfg~-~~~r~~~s~fPft~Ps~e~dI~~~g~WlEvlG~G~vhP~Vl~~ 256 (402)
T PLN02788 206 LARHLFGD-VEMRWVDAYFPFTNPSFELEIFFKGEWLEVLGCGVTEQEILKN 256 (402)
T ss_pred HHHHhcCC-CceEEecCCCCCCCCCeEEEEEECCEEEEEeeEEEEcHHHHHH
Confidence 99999996 6899999999999999999999999999999999999999864
No 4
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.8e-68 Score=512.50 Aligned_cols=186 Identities=34% Similarity=0.628 Sum_probs=172.5
Q ss_pred ccCCCCCCCCCCChHHHHHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccccCCCCCCCCCCCCCcccccccc--
Q psy7414 59 SYLNKNLHNKKYHPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSKNDCYYVNRE-- 136 (320)
Q Consensus 59 s~~gr~l~~~~~HPl~il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~L~~P~DHPsR~~~DTyYin~~-- 136 (320)
+.+|+....|..|||+.+.++|+++|.++ | |++.++ ++|+|.+||||+||+|+|||||+++|||||+.+
T Consensus 99 ~lp~~~~~~G~~Hpl~~~~e~i~~iF~~m-----G---F~~~~g-p~IE~d~~NFDaLn~P~dHPARdmqDTFy~~~~~~ 169 (335)
T COG0016 99 TLPGRRIYPGSLHPLTQTIEEIEDIFLGM-----G---FTEVEG-PEIETDFYNFDALNIPQDHPARDMQDTFYLKDDRE 169 (335)
T ss_pred CCCCccCCCCCcChHHHHHHHHHHHHHHc-----C---ceeccC-CcccccccchhhhcCCCCCCcccccceEEEcCCCC
Confidence 36888888899999999999999999863 5 999998 799999999999999999999999999999987
Q ss_pred -ccccccCchhhHHHHHcC---CCeEEEecccccCCCcCCCCCCcceeeeEEEEeeccccccCccCcccccceecccCCC
Q psy7414 137 -YLLRAHTTAHQSELIRMG---LDNFVVFGDVYRRDQIDSTHFPVFHQADGVHLLNRDQVSRGDIGVGTSLKIMTIFTPT 212 (320)
Q Consensus 137 -~lLRTHTSAhq~~~l~~~---~~~~l~~GdVYRRDeID~tHyPvFHQmEG~~v~~~~~l~~~~~~~~~~~~~~~~~~~~ 212 (320)
.||||||||+|+|+|.+. +-+++++|+|||+|++|+||+|+|||+||++|.
T Consensus 170 ~~lLRTHTs~vq~R~l~~~~~~P~k~~~~grvyR~D~~DaTHs~~FhQiEGlvvd------------------------- 224 (335)
T COG0016 170 KLLLRTHTSPVQARTLAENAKIPIKIFSPGRVYRNDTVDATHSPEFHQIEGLVVD------------------------- 224 (335)
T ss_pred ceeecccCcHhhHHHHHhCCCCCceEecccceecCCCCCcccchheeeeEEEEEe-------------------------
Confidence 599999999999999876 459999999999999999999999999999993
Q ss_pred chhhhhhhhccccccccCcceeeeecCCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHhCCCccEEEeccCCCCCCC
Q psy7414 213 SQEYFYIKKCNKISESIGQNIVIFEQGGVHTDEKQARHTLDATKVMEQKLKNSLVKLAKILFGDDIQMRWISEYFPFTHP 292 (320)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~q~~h~~~~~~~v~~~LK~tLe~lv~~lFg~~~~~Rw~~ayFPFTeP 292 (320)
++++ .+|||++|+.|++++||.++++||+|+|||||||
T Consensus 225 ------------------~~~s------------------------~~~Lkg~L~~f~~~~fg~~~~vRfrpsyFPFTEP 262 (335)
T COG0016 225 ------------------KNIS------------------------FADLKGTLEEFAKKFFGEDVKVRFRPSYFPFTEP 262 (335)
T ss_pred ------------------CCcc------------------------HHHHHHHHHHHHHHhcCCCcceEeecCCCCCCCC
Confidence 3444 3899999999999999999999999999999999
Q ss_pred ceEEEeeeC--CceEEEeecccccccccCC
Q psy7414 293 SWELEILLN--DKWVEILGCGVIRHEILDR 320 (320)
Q Consensus 293 S~EleV~~~--g~WLEvLGCGvv~~~vL~~ 320 (320)
|+||||+|+ |+||||||||||||+||++
T Consensus 263 S~Evdv~~~~~~~WlEi~G~Gmv~P~VL~~ 292 (335)
T COG0016 263 SAEVDVYCPGCGGWLEILGCGMVHPNVLEA 292 (335)
T ss_pred eEEEEEEEcCCCCEEEEecccccCHHHHHh
Confidence 999999999 5699999999999999974
No 5
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=100.00 E-value=4.1e-64 Score=485.82 Aligned_cols=186 Identities=33% Similarity=0.614 Sum_probs=171.9
Q ss_pred ccCCCCCCCCCCChHHHHHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccccCCCCCCCCCCCCCcccccccccc
Q psy7414 59 SYLNKNLHNKKYHPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSKNDCYYVNREYL 138 (320)
Q Consensus 59 s~~gr~l~~~~~HPl~il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~L~~P~DHPsR~~~DTyYin~~~l 138 (320)
+++|+..+.|..||+++++++|+++|.+ +| |+++++ ++|+++++|||+||+|+|||||+++|||||++..|
T Consensus 96 t~p~~~~~~G~~HPl~~~~~~Ir~if~~-----mG---F~ev~g-peIes~~~NFdaLn~P~dHPaR~~~DTfyI~~~~l 166 (339)
T PRK00488 96 TLPGRRIELGSLHPITQTIEEIEDIFVG-----MG---FEVAEG-PEIETDYYNFEALNIPKDHPARDMQDTFYIDDGLL 166 (339)
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHHh-----CC---CEEEeC-CccccHHHHHHHhCCCCCCcccccCceEEEcCCce
Confidence 4788999999999999999999999975 35 999987 88999999999999999999999999999999999
Q ss_pred ccccCchhhHHHHHcCC--CeEEEecccccCCCcCCCCCCcceeeeEEEEeeccccccCccCcccccceecccCCCchhh
Q psy7414 139 LRAHTTAHQSELIRMGL--DNFVVFGDVYRRDQIDSTHFPVFHQADGVHLLNRDQVSRGDIGVGTSLKIMTIFTPTSQEY 216 (320)
Q Consensus 139 LRTHTSAhq~~~l~~~~--~~~l~~GdVYRRDeID~tHyPvFHQmEG~~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 216 (320)
||||||++|++.|++.. -+++.+|+|||||++|+||+|+|||+||+++.
T Consensus 167 LRThTSp~qir~L~~~~~Pirif~~G~VyR~D~~DatH~~~FhQleglvvd----------------------------- 217 (339)
T PRK00488 167 LRTHTSPVQIRTMEKQKPPIRIIAPGRVYRNDSDDATHSPMFHQVEGLVVD----------------------------- 217 (339)
T ss_pred eeccCcHHHHHHHHhcCCCeEEEEeeeEEEcCCCCcccCcceeeEEEEEEe-----------------------------
Confidence 99999999999998753 38999999999999999999999999999994
Q ss_pred hhhhhccccccccCcceeeeecCCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHhCCCccEEEeccCCCCCCCceEE
Q psy7414 217 FYIKKCNKISESIGQNIVIFEQGGVHTDEKQARHTLDATKVMEQKLKNSLVKLAKILFGDDIQMRWISEYFPFTHPSWEL 296 (320)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~q~~h~~~~~~~v~~~LK~tLe~lv~~lFg~~~~~Rw~~ayFPFTePS~El 296 (320)
++++ .+|||++|+.|++++||+++++||+|+||||||||+||
T Consensus 218 --------------~~vt------------------------f~dLK~~L~~fl~~~fg~~~~~R~rpsyFPFTePS~Ev 259 (339)
T PRK00488 218 --------------KNIS------------------------FADLKGTLEDFLKAFFGEDVKIRFRPSYFPFTEPSAEV 259 (339)
T ss_pred --------------CCCC------------------------HHHHHHHHHHHHHHHcCCCCeEEecCCCCCCCCCceEE
Confidence 2233 27999999999999999999999999999999999999
Q ss_pred EeeeC------------CceEEEeecccccccccCC
Q psy7414 297 EILLN------------DKWVEILGCGVIRHEILDR 320 (320)
Q Consensus 297 eV~~~------------g~WLEvLGCGvv~~~vL~~ 320 (320)
||+|. ++||||||||||||+||++
T Consensus 260 dv~~~~~~g~gc~~ck~~~WiEilG~Gmv~p~vl~~ 295 (339)
T PRK00488 260 DVSCFKCGGKGCRVCKGTGWLEILGCGMVHPNVLRN 295 (339)
T ss_pred EEEEeccCCCcccccCCCCceEEeccCccCHHHHHH
Confidence 99995 4699999999999999974
No 6
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain
Probab=100.00 E-value=1.1e-63 Score=500.79 Aligned_cols=197 Identities=27% Similarity=0.455 Sum_probs=175.1
Q ss_pred CCCCCCCC--hhhhccCCCCCCCCCCChHHHHHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccccCCCCCCCCC
Q psy7414 47 TDDYTNVT--PKILSYLNKNLHNKKYHPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVS 124 (320)
Q Consensus 47 ~d~~tNvt--~~Ils~~gr~l~~~~~HPl~il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~L~~P~DHPs 124 (320)
..+|.|.+ |..++..|+.++.|..|||++++++|+++|.+ +| |++++..++|+|.+||||+|++|+||||
T Consensus 195 sg~Wk~~~fk~Yn~~a~g~~~~~G~~HPl~~~~~ei~~if~~-----mG---F~e~~~g~~ves~f~NFDaL~~PqdHPA 266 (492)
T PLN02853 195 SGDWKDLEFKEYNFNALGAPPEGGHLHPLLKVRQQFRKIFLQ-----MG---FEEMPTNNFVESSFWNFDALFQPQQHPA 266 (492)
T ss_pred CCCcccCCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHHHh-----CC---CEEecCCCCeechhhhhhhhcCCCCCCC
Confidence 33566554 56666799999999999999999999999975 35 9999655999999999999999999999
Q ss_pred CCCCcccccc---------------------------------------ccccccccCchhhHHHHHc------CCCeEE
Q psy7414 125 RSKNDCYYVN---------------------------------------REYLLRAHTTAHQSELIRM------GLDNFV 159 (320)
Q Consensus 125 R~~~DTyYin---------------------------------------~~~lLRTHTSAhq~~~l~~------~~~~~l 159 (320)
|+++|||||+ +..||||||||+|+++|.+ .+.+++
T Consensus 267 Rd~qDTFyl~~~~~~~~~p~~~~erVk~~He~G~~gS~Gw~y~W~~~~a~~~vLRTHTTa~s~r~L~~~~~~~~~p~k~f 346 (492)
T PLN02853 267 RDSHDTFFLKAPATTRQLPEDYVERVKTVHESGGYGSIGYGYDWKREEANKNLLRTHTTAVSSRMLYKLAQKGFKPKRYF 346 (492)
T ss_pred CCccceEEEcCccccccCcHHHHHHHHHHHhcCCCCccccccccccchhcccccCCCCCHHHHHHHHHhhccCCCCcEEE
Confidence 9999999998 4689999999999999984 234899
Q ss_pred EecccccCCCcCCCCCCcceeeeEEEEeeccccccCccCcccccceecccCCCchhhhhhhhccccccccCcceeeeecC
Q psy7414 160 VFGDVYRRDQIDSTHFPVFHQADGVHLLNRDQVSRGDIGVGTSLKIMTIFTPTSQEYFYIKKCNKISESIGQNIVIFEQG 239 (320)
Q Consensus 160 ~~GdVYRRDeID~tHyPvFHQmEG~~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 239 (320)
++|+|||||+||+||+|+|||+||+++. ++++
T Consensus 347 sigrVfR~d~iDatH~~eFhQ~EG~vvd-------------------------------------------~~~t----- 378 (492)
T PLN02853 347 SIDRVFRNEAVDRTHLAEFHQVEGLVCD-------------------------------------------RGLT----- 378 (492)
T ss_pred eccceecCCCCCcccCccceeEEEEEEe-------------------------------------------CCCC-----
Confidence 9999999999999999999999999993 3344
Q ss_pred CCCCcccccccchhHHHHHHHHHHHHHHHHHHHHhCCCccEEEeccCCCCCCCceEEEeeeC--CceEEEeecccccccc
Q psy7414 240 GVHTDEKQARHTLDATKVMEQKLKNSLVKLAKILFGDDIQMRWISEYFPFTHPSWELEILLN--DKWVEILGCGVIRHEI 317 (320)
Q Consensus 240 ~~~~~~~q~~h~~~~~~~v~~~LK~tLe~lv~~lFg~~~~~Rw~~ayFPFTePS~EleV~~~--g~WLEvLGCGvv~~~v 317 (320)
.+|||++|+.|++.+ |. .++||+|+||||||||+|++|++. |+||||+||||+||+|
T Consensus 379 -------------------~~~L~g~l~~f~~~l-g~-~~~RfrP~yfPfTEPS~Ei~v~~~~~gkWiEi~g~Gm~rpev 437 (492)
T PLN02853 379 -------------------LGDLIGVLEDFFSRL-GM-TKLRFKPAYNPYTEPSMEIFSYHEGLKKWVEVGNSGMFRPEM 437 (492)
T ss_pred -------------------HHHHHHHHHHHHHHc-CC-ceEEEecCCCCCCCCeEEEEEEecCCCCEEEEecCcCcCHHH
Confidence 279999999999997 75 899999999999999999999876 6799999999999999
Q ss_pred cCC
Q psy7414 318 LDR 320 (320)
Q Consensus 318 L~~ 320 (320)
|++
T Consensus 438 l~~ 440 (492)
T PLN02853 438 LLP 440 (492)
T ss_pred HHh
Confidence 964
No 7
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=100.00 E-value=6.7e-60 Score=474.57 Aligned_cols=199 Identities=24% Similarity=0.441 Sum_probs=176.8
Q ss_pred ecCCCCCCCC--hhhhccCCCCCCCCCCChHHHHHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccccCCCCCCC
Q psy7414 45 YHTDDYTNVT--PKILSYLNKNLHNKKYHPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDH 122 (320)
Q Consensus 45 y~~d~~tNvt--~~Ils~~gr~l~~~~~HPl~il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~L~~P~DH 122 (320)
+...+|.+.. |..++.+|+.++.|..|||++++++|+++|.+ +| |+++++.++|+|.+||||+|++|+||
T Consensus 201 l~sg~Wk~~~fk~yn~~~~~~~~~~g~~HPl~~~~~~i~~if~~-----mG---F~e~~~~~~ves~f~NFDaL~~PqdH 272 (494)
T PTZ00326 201 LLNGSWKNAEFKEYNFNALGKKIGGGNLHPLLKVRREFREILLE-----MG---FEEMPTNRYVESSFWNFDALFQPQQH 272 (494)
T ss_pred hhCCccccCCcccceecCCCCCCCCCCCChHHHHHHHHHHHHHh-----CC---CEEecCCCCccccchhhhhhcCCCCC
Confidence 3344676655 67777899999999999999999999999975 35 99999878999999999999999999
Q ss_pred CCCCCCccccccc-----------------------------------------cccccccCchhhHHHHHcC-------
Q psy7414 123 VSRSKNDCYYVNR-----------------------------------------EYLLRAHTTAHQSELIRMG------- 154 (320)
Q Consensus 123 PsR~~~DTyYin~-----------------------------------------~~lLRTHTSAhq~~~l~~~------- 154 (320)
|||+++|||||+. +.+|||||||+|+++|.+.
T Consensus 273 PARd~~DTFyl~~~~~~~~~~~p~~~~~~Vk~~He~G~~gS~Gw~y~W~~e~a~~~vLRtHtTa~~aR~l~~~~~~~~~~ 352 (494)
T PTZ00326 273 PARDAQDTFFLSKPETSKVNDLDDDYVERVKKVHEVGGYGSIGWRYDWKLEEARKNILRTHTTAVSARMLYKLAQEYKKT 352 (494)
T ss_pred CCCCcCceEEEcCccccccccCcHHHHHHHHHHhccCCcCCcccccccccchhccccccCCCCHHHHHHHHhhccccccc
Confidence 9999999999984 5799999999999999752
Q ss_pred ----CCeEEEecccccCCCcCCCCCCcceeeeEEEEeeccccccCccCcccccceecccCCCchhhhhhhhccccccccC
Q psy7414 155 ----LDNFVVFGDVYRRDQIDSTHFPVFHQADGVHLLNRDQVSRGDIGVGTSLKIMTIFTPTSQEYFYIKKCNKISESIG 230 (320)
Q Consensus 155 ----~~~~l~~GdVYRRDeID~tHyPvFHQmEG~~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (320)
+.+++++|+|||||++|+||+|+|||+||+++. +
T Consensus 353 ~~~~P~k~fsigrVfR~d~~DatH~~eFhQ~Eg~vi~---------~--------------------------------- 390 (494)
T PTZ00326 353 GPFKPKKYFSIDRVFRNETLDATHLAEFHQVEGFVID---------R--------------------------------- 390 (494)
T ss_pred cCCCCceEEecCCEecCCCCCCCcCceeEEEEEEEEe---------C---------------------------------
Confidence 348999999999999999999999999999994 1
Q ss_pred cceeeeecCCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHhCCCccEEEeccCCCCCCCceEEEeeeC--CceEEEe
Q psy7414 231 QNIVIFEQGGVHTDEKQARHTLDATKVMEQKLKNSLVKLAKILFGDDIQMRWISEYFPFTHPSWELEILLN--DKWVEIL 308 (320)
Q Consensus 231 ~~~~~f~~~~~~~~~~q~~h~~~~~~~v~~~LK~tLe~lv~~lFg~~~~~Rw~~ayFPFTePS~EleV~~~--g~WLEvL 308 (320)
+++ .+||+++|..|++.+ |. .++||+|+||||||||+|++|+|. |+||||+
T Consensus 391 -~~s------------------------~~~L~~~l~~f~~~l-G~-~~~RfrP~yfPfTEPS~Ev~v~~~~~gkWIEIg 443 (494)
T PTZ00326 391 -NLT------------------------LGDLIGTIREFFRRI-GI-TKLRFKPAFNPYTEPSMEIFGYHPGLKKWVEVG 443 (494)
T ss_pred -CCC------------------------HHHHHHHHHHHHHhc-CC-CceEEecCCCCCCCCeeEEEEEecCCCcEEEEe
Confidence 122 279999999999998 75 699999999999999999999997 6799999
Q ss_pred ecccccccccCC
Q psy7414 309 GCGVIRHEILDR 320 (320)
Q Consensus 309 GCGvv~~~vL~~ 320 (320)
||||+||+||++
T Consensus 444 g~Gm~rpevL~~ 455 (494)
T PTZ00326 444 NSGIFRPEMLRP 455 (494)
T ss_pred CcCccCHHHHHh
Confidence 999999999863
No 8
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases [].; GO: 0000049 tRNA binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TUP_A 3HFV_A 3CMQ_A 3TEG_A 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B ....
Probab=100.00 E-value=2e-59 Score=436.54 Aligned_cols=187 Identities=35% Similarity=0.650 Sum_probs=169.6
Q ss_pred hccCCCCCCCCCCChHHHHHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccccCCCCCCCCCCCCCccccc----
Q psy7414 58 LSYLNKNLHNKKYHPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSKNDCYYV---- 133 (320)
Q Consensus 58 ls~~gr~l~~~~~HPl~il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~L~~P~DHPsR~~~DTyYi---- 133 (320)
++++|+..+.|..||+++++++|+++|.+ +| |+++++ ++|+|+++|||+||+|+|||||+++|||||
T Consensus 4 ~~~p~~~~~~G~~hp~~~~~~~i~~~~~~-----~G---f~e~~~-~~v~s~~~nFD~Ln~p~dHpaR~~~Dtfyi~~p~ 74 (247)
T PF01409_consen 4 VTLPGKRFTPGRLHPITKFIREIRDIFVG-----MG---FQEVEG-PEVESEFYNFDALNIPQDHPARDMQDTFYISNPY 74 (247)
T ss_dssp TTSGCTTCCCSBTSHHHHHHHHHHHHHHC-----TT---SEEEST-TSEEEHHHHTGGGTSTTTSCGGCGTTSEBSCSSS
T ss_pred ccCCCCCCCCCCCCHHHHHHHHHHHHHHH-----CC---CeEeeC-CeEEeeHHHHHhhCcCCCccccccccceeeeccc
Confidence 35788999999999999999999999974 35 999996 999999999999999999999999999999
Q ss_pred ---cccccccccCchhhHHHHHcC---CCeEEEecccccCCCcCCCCCCcceeeeEEEEeeccccccCccCcccccceec
Q psy7414 134 ---NREYLLRAHTTAHQSELIRMG---LDNFVVFGDVYRRDQIDSTHFPVFHQADGVHLLNRDQVSRGDIGVGTSLKIMT 207 (320)
Q Consensus 134 ---n~~~lLRTHTSAhq~~~l~~~---~~~~l~~GdVYRRDeID~tHyPvFHQmEG~~v~~~~~l~~~~~~~~~~~~~~~ 207 (320)
++..||||||||+|+++|.+. +-+++.+|+|||||+||+||+|+|||+||+.+.
T Consensus 75 ~~~~~~~vLRThts~~~~~~l~~~~~~p~kif~iG~VyR~D~~D~th~~~f~Qleg~~~~-------------------- 134 (247)
T PF01409_consen 75 SAEEDYSVLRTHTSPGQLRTLNKHRPPPIKIFEIGKVYRRDEIDATHLPEFHQLEGLVVD-------------------- 134 (247)
T ss_dssp BCECSSEEE-SSTHHHHHHHHTTTSHSSEEEEEEEEEESSSCSBSSBESEEEEEEEEEEE--------------------
T ss_pred cccchhhhhhhhhhHHHHHHHHHhcCCCeEEEecCceEecCCcccccCccceeEeeEEEe--------------------
Confidence 899999999999999999332 348999999999999999999999999999994
Q ss_pred ccCCCchhhhhhhhccccccccCcceeeeecCCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHhCCCccEEEeccCC
Q psy7414 208 IFTPTSQEYFYIKKCNKISESIGQNIVIFEQGGVHTDEKQARHTLDATKVMEQKLKNSLVKLAKILFGDDIQMRWISEYF 287 (320)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~q~~h~~~~~~~v~~~LK~tLe~lv~~lFg~~~~~Rw~~ayF 287 (320)
++++ | .|||++|+.|+++|||.++++||+|+||
T Consensus 135 -----------------------~~~~-f-----------------------~~Lk~~l~~l~~~lfG~~~~~r~~ps~f 167 (247)
T PF01409_consen 135 -----------------------KNVT-F-----------------------EDLKGTLEELLKELFGIDVKVRFRPSYF 167 (247)
T ss_dssp -----------------------TTE--H-----------------------HHHHHHHHHHHHHHHTTTEEEEEEECEE
T ss_pred -----------------------cccc-h-----------------------hHHHHHHHHHHHHHhhcccceEeecCCC
Confidence 2233 2 7899999999999999999999999999
Q ss_pred CCCCCceEEEeee----CCceEEEeecccccccccCC
Q psy7414 288 PFTHPSWELEILL----NDKWVEILGCGVIRHEILDR 320 (320)
Q Consensus 288 PFTePS~EleV~~----~g~WLEvLGCGvv~~~vL~~ 320 (320)
|||+||+|++|++ +++|+||+||||+||+||++
T Consensus 168 PftePs~e~~i~~~~~~~~~wiEvgg~G~vhP~Vl~~ 204 (247)
T PF01409_consen 168 PFTEPSREADIYCGVCKGGGWIEVGGCGMVHPEVLEN 204 (247)
T ss_dssp TTEEEEEEEEEEEECTTTTCEEEEEEEEEE-HHHHHH
T ss_pred CcccCCeEEEEEEeeccCCCceEEeecccccHhhhhc
Confidence 9999999999999 78999999999999999864
No 9
>TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit. Most phenylalanyl-tRNA synthetases are heterodimeric, with 2 alpha (pheS) and 2 beta (pheT) subunits. This model describes the alpha subunit, which shows some similarity to class II aminoacyl-tRNA ligases. Mitochondrial phenylalanyl-tRNA synthetase is a single polypeptide chain, active as a monomer, and similar to this chain rather than to the beta chain, but excluded from this model. An interesting feature of the alignment of all sequences captured by this model is a deep split between non-spirochete bacterial examples and all other examples; supporting this split is a relative deletion of about 50 residues in the former set between two motifs well conserved throughout the alignment.
Probab=100.00 E-value=9e-41 Score=317.50 Aligned_cols=185 Identities=35% Similarity=0.619 Sum_probs=165.1
Q ss_pred ccCCCCCCCCCCChHHHHHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccccCCCCCCCCCCCCCcccccccccc
Q psy7414 59 SYLNKNLHNKKYHPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSKNDCYYVNREYL 138 (320)
Q Consensus 59 s~~gr~l~~~~~HPl~il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~L~~P~DHPsR~~~DTyYin~~~l 138 (320)
+.++.....+..||+..++++|++.|.. +| |....+ +++++.++|||+|++|+|||+|+++|||||++..+
T Consensus 60 tlp~~~~~~g~~~p~~~~~~~ir~~l~~-----~G---f~Ev~~-~~~~s~~~~fd~l~~~~~hpar~~~d~~~l~d~~v 130 (294)
T TIGR00468 60 TLPGTKIYPGSLHPLTRVIDEIRDIFLG-----LG---FTEEKG-PEVETDFWNFDALNIPQDHPARDMQDTFYIKDRLL 130 (294)
T ss_pred cCCCCCCCCCCcCHHHHHHHHHHHHHHH-----CC---CEEeeC-CceeccHHHHHHhCCCCCCcchhhccceeecCCcc
Confidence 3556666779999999999999999975 35 998887 67889999999999999999999999999999999
Q ss_pred ccccCchhhHHHHHcCC---CeEEEecccccCCCcCCCCCCcceeeeEEEEeeccccccCccCcccccceecccCCCchh
Q psy7414 139 LRAHTTAHQSELIRMGL---DNFVVFGDVYRRDQIDSTHFPVFHQADGVHLLNRDQVSRGDIGVGTSLKIMTIFTPTSQE 215 (320)
Q Consensus 139 LRTHTSAhq~~~l~~~~---~~~l~~GdVYRRDeID~tHyPvFHQmEG~~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 215 (320)
|||||++.|.+.++.+. -+++.+|+|||+|++|++|+|+|||+||+.+.
T Consensus 131 LRtsl~p~ll~~l~~N~~~pirlFEiGrVfr~d~~d~~~~pef~ql~gl~~~---------------------------- 182 (294)
T TIGR00468 131 LRTHTTAVQLRTMEENEKPPIRIFSPGRVFRNDTVDATHLPEFHQVEGLVID---------------------------- 182 (294)
T ss_pred eecccHHHHHHHHHhcCCCCceEEEecceEEcCCCCCccCChhhEEEEEEEC----------------------------
Confidence 99999999999998765 38999999999999999999999999999662
Q ss_pred hhhhhhccccccccCcceeeeecCCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHhCCCccEEEeccCCCCCCCceE
Q psy7414 216 YFYIKKCNKISESIGQNIVIFEQGGVHTDEKQARHTLDATKVMEQKLKNSLVKLAKILFGDDIQMRWISEYFPFTHPSWE 295 (320)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~q~~h~~~~~~~v~~~LK~tLe~lv~~lFg~~~~~Rw~~ayFPFTePS~E 295 (320)
++++ | .|||++|+.|+..+++. .++||+++|||||+||+|
T Consensus 183 ---------------~~~~-f-----------------------~dLKg~le~ll~~l~~~-~~~~~~~~~~p~~~Ps~e 222 (294)
T TIGR00468 183 ---------------KNVS-F-----------------------TNLKGFLEEFLKKMFGE-TEIRFRPSYFPFTEPSAE 222 (294)
T ss_pred ---------------CCCC-H-----------------------HHHHHHHHHHHHHhCCC-cceeeccCCCCCCCCCEE
Confidence 1122 3 78999999999999875 789999999999999999
Q ss_pred EEeee-CCc-eEEEeecccccccccCC
Q psy7414 296 LEILL-NDK-WVEILGCGVIRHEILDR 320 (320)
Q Consensus 296 leV~~-~g~-WLEvLGCGvv~~~vL~~ 320 (320)
++|++ +|+ |+||+|||+|||+||++
T Consensus 223 ~~i~~~~g~~w~eiG~~G~vhP~Vl~~ 249 (294)
T TIGR00468 223 IDVYCWEGKTWLEVLGAGMFRPEVLEP 249 (294)
T ss_pred EEEEEeCCCccEEEEEeccCcHHHHHH
Confidence 99999 775 99999999999999864
No 10
>KOG2784|consensus
Probab=100.00 E-value=5.8e-41 Score=324.80 Aligned_cols=185 Identities=28% Similarity=0.496 Sum_probs=165.1
Q ss_pred hccCCCCCCCCCCChHHHHHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccccCCCCCCCCCCCCCccccccc--
Q psy7414 58 LSYLNKNLHNKKYHPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSKNDCYYVNR-- 135 (320)
Q Consensus 58 ls~~gr~l~~~~~HPl~il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~L~~P~DHPsR~~~DTyYin~-- 135 (320)
....|-..-.|..|||..+|++.+++|.++ | |+.+....-|+|.+||||+|++|+.||||+.+|||||+.
T Consensus 199 F~a~G~~p~~G~lHPLmKvR~eFRqiF~em-----G---FsEMptn~yVEssFWNFDALfqPQqHpARDahDTFfl~~Pa 270 (483)
T KOG2784|consen 199 FNAEGVPPSSGHLHPLMKVREEFRQIFFEM-----G---FSEMPTNNYVESSFWNFDALFQPQQHPARDAHDTFFLKDPA 270 (483)
T ss_pred cccCCCCCCCCccchHHHHHHHHHHHHHHc-----c---ccccccccchhhccccchhhcCcccCCccccccceEecChh
Confidence 334677788899999999999999999864 5 999988889999999999999999999999999999973
Q ss_pred -------------------------------------cccccccCchhhHHHHHc----C--CCeEEEecccccCCCcCC
Q psy7414 136 -------------------------------------EYLLRAHTTAHQSELIRM----G--LDNFVVFGDVYRRDQIDS 172 (320)
Q Consensus 136 -------------------------------------~~lLRTHTSAhq~~~l~~----~--~~~~l~~GdVYRRDeID~ 172 (320)
..+|||||||+.+|.|.+ + +.+++++.+|||++++|+
T Consensus 271 ~s~~~p~dY~~rVk~vH~~G~ygs~GY~y~wk~eEaqKnvLRTHTTavSArmLy~LAk~~f~p~K~FSIDrVFRNEtvDa 350 (483)
T KOG2784|consen 271 TSTKFPEDYLERVKAVHEQGGYGSIGYRYNWKLEEAQKNVLRTHTTAVSARMLYRLAKKGFKPAKYFSIDRVFRNETVDA 350 (483)
T ss_pred hcccCCHHHHHHHHHHHhcCCcCCcccCCCCCHHHHHHHHHhhhhHHhhHHHHHHHHhCCCCcccccchhhhhhccccch
Confidence 359999999999998843 2 348999999999999999
Q ss_pred CCCCcceeeeEEEEeeccccccCccCcccccceecccCCCchhhhhhhhccccccccCcceeeeecCCCCCcccccccch
Q psy7414 173 THFPVFHQADGVHLLNRDQVSRGDIGVGTSLKIMTIFTPTSQEYFYIKKCNKISESIGQNIVIFEQGGVHTDEKQARHTL 252 (320)
Q Consensus 173 tHyPvFHQmEG~~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~q~~h~~ 252 (320)
||..+|||+||+... .+++|
T Consensus 351 THLAEFHQVEGviad-------------------------------------------~gltL----------------- 370 (483)
T KOG2784|consen 351 THLAEFHQVEGVIAD-------------------------------------------KGLTL----------------- 370 (483)
T ss_pred HHHHHHhhhceeeec-------------------------------------------CCCcH-----------------
Confidence 999999999999882 45664
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCccEEEeccCCCCCCCceEEEeeeCC--ceEEEeecccccccccC
Q psy7414 253 DATKVMEQKLKNSLVKLAKILFGDDIQMRWISEYFPFTHPSWELEILLND--KWVEILGCGVIRHEILD 319 (320)
Q Consensus 253 ~~~~~v~~~LK~tLe~lv~~lFg~~~~~Rw~~ayFPFTePS~EleV~~~g--~WLEvLGCGvv~~~vL~ 319 (320)
.||.++|+.|..++ | -..+|+.|+|-||||||+|+-.+..| +|+||+..||+||+.|.
T Consensus 371 -------gdLig~l~~ff~~l-g-~tnlrfKPaynpYtepsmeif~yh~gl~kwvEvgnSg~frPeml~ 430 (483)
T KOG2784|consen 371 -------GDLIGILMEFFTKL-G-ATNLRFKPAYNPYTEPSMEIFSYHHGLFKWVEVGNSGMFRPEMLL 430 (483)
T ss_pred -------HHHHHHHHHHHhcc-C-CccccccCCCCCCCCceeEEEEeccccceEEEEcCCCCCCHhHhh
Confidence 79999999999887 4 45799999999999999999999986 89999999999999874
No 11
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional
Probab=100.00 E-value=6.2e-39 Score=322.99 Aligned_cols=187 Identities=30% Similarity=0.521 Sum_probs=163.0
Q ss_pred hhhhccCCCCCCCCCCChHHHHHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccccCCCCCCCCCCCCCcccccc
Q psy7414 55 PKILSYLNKNLHNKKYHPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSKNDCYYVN 134 (320)
Q Consensus 55 ~~Ils~~gr~l~~~~~HPl~il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~L~~P~DHPsR~~~DTyYin 134 (320)
|..++..|+.+..+..||+..+++.|+++|.. +| |+.+++ |-|++.+||||+|++|+|||||+++||||++
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~-----~G---f~e~~~-p~vE~~~~nfd~lf~p~~hpaR~~~dtf~~~ 287 (489)
T PRK04172 217 PYNVKAPPPKIYPGKKHPYREFIDEVRDILVE-----MG---FEEMKG-PLVETEFWNFDALFQPQDHPAREMQDTFYLK 287 (489)
T ss_pred cceeCCCCCCCCCCCCChHHHHHHHHHHHHHH-----CC---CEEeeC-CeeeecCcccccccCCCCCCCCCccceEEEC
Confidence 34444688889999999999999999999975 36 999985 6677999999999999999999999999997
Q ss_pred c---------------------------------------cccccccCchhhHHHHHcC---CCeEEEecccccCCCcCC
Q psy7414 135 R---------------------------------------EYLLRAHTTAHQSELIRMG---LDNFVVFGDVYRRDQIDS 172 (320)
Q Consensus 135 ~---------------------------------------~~lLRTHTSAhq~~~l~~~---~~~~l~~GdVYRRDeID~ 172 (320)
. ..+|||||||.+++++.+. .-+++.+|+|||+|++|+
T Consensus 288 ~~~~~~~~~~~~~~v~~~he~g~~~~~~~~~y~~~~~~~~~~~LR~~~T~~~~r~l~~~~~~p~rlFeiGrVFR~e~~d~ 367 (489)
T PRK04172 288 YPGIGDLPEELVERVKEVHEHGGDTGSRGWGYKWDEDIAKRLVLRTHTTALSARYLASRPEPPQKYFSIGRVFRPDTIDA 367 (489)
T ss_pred CcccccCcHHHHHHHHHHHhccCCCCCccccCCcchhhhhccccccCChHHHHHHHHhcCCCCeEEEEecceEcCCCCCc
Confidence 3 2499999999999999743 238999999999999999
Q ss_pred CCCCcceeeeEEEEeeccccccCccCcccccceecccCCCchhhhhhhhccccccccCcceeeeecCCCCCcccccccch
Q psy7414 173 THFPVFHQADGVHLLNRDQVSRGDIGVGTSLKIMTIFTPTSQEYFYIKKCNKISESIGQNIVIFEQGGVHTDEKQARHTL 252 (320)
Q Consensus 173 tHyPvFHQmEG~~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~q~~h~~ 252 (320)
+|+++|||++|+.+.. + +.
T Consensus 368 ~~l~Ef~ql~~~i~G~---------~----------------------------------~~------------------ 386 (489)
T PRK04172 368 THLPEFYQLEGIVMGE---------D----------------------------------VS------------------ 386 (489)
T ss_pred ccCCchheEEEEEEeC---------C----------------------------------CC------------------
Confidence 9999999999999951 0 11
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCccEEEeccCCCCCCCceEEEeeeCC-ceEEEeecccccccccC
Q psy7414 253 DATKVMEQKLKNSLVKLAKILFGDDIQMRWISEYFPFTHPSWELEILLND-KWVEILGCGVIRHEILD 319 (320)
Q Consensus 253 ~~~~~v~~~LK~tLe~lv~~lFg~~~~~Rw~~ayFPFTePS~EleV~~~g-~WLEvLGCGvv~~~vL~ 319 (320)
..+||++++.++..+ |-. +++|.++|||||+||.|++|+++| +|.||++||++||+||+
T Consensus 387 ------f~elkg~l~~ll~~l-Gi~-~~~~~~~~~p~~~P~~~~~i~~~g~~w~eiG~~G~l~Pevl~ 446 (489)
T PRK04172 387 ------FRDLLGILKEFYKRL-GFE-EVKFRPAYFPFTEPSVEVEVYHEGLGWVELGGAGIFRPEVLE 446 (489)
T ss_pred ------HHHHHHHHHHHHHHh-CCc-eEEEcCCcCCCCCCeEEEEEEECCCCeEEEEeccccCHHHHH
Confidence 268999999999987 532 689999999999999999999954 79999999999999986
No 12
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase. This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys.
Probab=99.95 E-value=6.9e-28 Score=241.09 Aligned_cols=114 Identities=22% Similarity=0.295 Sum_probs=100.5
Q ss_pred cccccccCchhhHHHHHc------CCCeEEEecccccCCC-cCCCCCCcceeeeEEEEeeccccccCccCcccccceecc
Q psy7414 136 EYLLRAHTTAHQSELIRM------GLDNFVVFGDVYRRDQ-IDSTHFPVFHQADGVHLLNRDQVSRGDIGVGTSLKIMTI 208 (320)
Q Consensus 136 ~~lLRTHTSAhq~~~l~~------~~~~~l~~GdVYRRDe-ID~tHyPvFHQmEG~~v~~~~~l~~~~~~~~~~~~~~~~ 208 (320)
..+||||||+.|.+.|+. .+-+++.+|+|||||+ +|+||.++|||+||+.+.
T Consensus 182 ~~lLRTHTTpgqirtL~~L~~~~~~PiRIFsIGRVfRrD~~~DaTHl~eFhQlEGLVVd--------------------- 240 (533)
T TIGR00470 182 TLTLRSHMTSGWFITLSSIIDKRKLPLKLFSIDRCFRREQREDRSHLMTYHSASCVVVD--------------------- 240 (533)
T ss_pred CcccccCChhHHHHHHHHHhhcCCCCeEEEeeeeEEecCCCCCCccCceeeeEEEEEEC---------------------
Confidence 479999999999999983 2349999999999995 899999999999999993
Q ss_pred cCCCchhhhhhhhccccccccCcceeeeecCCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHhCCCccEEEecc---
Q psy7414 209 FTPTSQEYFYIKKCNKISESIGQNIVIFEQGGVHTDEKQARHTLDATKVMEQKLKNSLVKLAKILFGDDIQMRWISE--- 285 (320)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~q~~h~~~~~~~v~~~LK~tLe~lv~~lFg~~~~~Rw~~a--- 285 (320)
++++ | .|||++|+.|++++ |. .++|++|+
T Consensus 241 ----------------------edVS-f-----------------------~DLKgvLe~LLr~L-G~-~~vRFRPsekr 272 (533)
T TIGR00470 241 ----------------------EEVS-V-----------------------DDGKAVAEGLLAQF-GF-TKFRFRPDEKK 272 (533)
T ss_pred ----------------------CCCC-H-----------------------HHHHHHHHHHHHHh-CC-ceEEeccCcCC
Confidence 3344 3 79999999999999 85 78999999
Q ss_pred ---CCCCCCCceEEEeeeC--CceEEEeecccccccccCC
Q psy7414 286 ---YFPFTHPSWELEILLN--DKWVEILGCGVIRHEILDR 320 (320)
Q Consensus 286 ---yFPFTePS~EleV~~~--g~WLEvLGCGvv~~~vL~~ 320 (320)
|||||+ .||+|++. ++|+||+||||+||+||++
T Consensus 273 skyYFPFTE--aEVdV~~~k~~gWiEIgG~GmVhPeVL~~ 310 (533)
T TIGR00470 273 SKYYIPETQ--TEVYAYHPKLGEWIEVATFGVYSPIALAK 310 (533)
T ss_pred CCCcCCCce--EEEEEEccCCCceEEEEeccccCHHHHHH
Confidence 999999 79999884 3699999999999999964
No 13
>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer.
Probab=99.79 E-value=2.6e-18 Score=156.53 Aligned_cols=174 Identities=40% Similarity=0.713 Sum_probs=146.3
Q ss_pred ChHHHHHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccccCCCCCCCCCCCCCccccccc--cccccccCchhhH
Q psy7414 71 HPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSKNDCYYVNR--EYLLRAHTTAHQS 148 (320)
Q Consensus 71 HPl~il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~L~~P~DHPsR~~~DTyYin~--~~lLRTHTSAhq~ 148 (320)
||+..+++.|++.|.. .| |....+ .+.++..+++|.++++.+||.|.+.+..+|.+ ..+|||+.++...
T Consensus 1 ~~~~~~~~~ir~~L~~-----~G---f~Ev~t-ys~~~~~~~~~~~~~~~~~~~~~~~~~v~l~NP~~~~LR~sLlp~LL 71 (218)
T cd00496 1 HPLNKVIEEIEDIFVS-----MG---FTEVEG-PEVETDFYNFDALNIPQDHPARDMQDTFYINDPARLLLRTHTSAVQA 71 (218)
T ss_pred ChHHHHHHHHHHHHHH-----CC---CEEEeC-CcccccchhhhhcCCCCCCcccccCceEEECCCceEEEeccCcHHHH
Confidence 8999999999999964 25 777665 45566668999999999999999999888866 4899999999999
Q ss_pred HHHHc--CCCeEEEecccccCCCcCCCCCCcceeeeEEEEeeccccccCccCcccccceecccCCCchhhhhhhhccccc
Q psy7414 149 ELIRM--GLDNFVVFGDVYRRDQIDSTHFPVFHQADGVHLLNRDQVSRGDIGVGTSLKIMTIFTPTSQEYFYIKKCNKIS 226 (320)
Q Consensus 149 ~~l~~--~~~~~l~~GdVYRRDeID~tHyPvFHQmEG~~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (320)
+.+.. ..-+++-+|+|||+|+.|++|+|+|+|++++.....
T Consensus 72 ~~l~~N~~~~~lFEiG~Vf~~~~~~~~~~~E~~~l~~~~~g~~------------------------------------- 114 (218)
T cd00496 72 RALAKLKPPIRIFSIGRVYRNDEIDATHLPEFHQIEGLVVDKG------------------------------------- 114 (218)
T ss_pred HHHHhcCCCeeEEEEcCeEECCCCCCCcCCccEEEEEEEECCC-------------------------------------
Confidence 99987 344899999999999999999999999999988410
Q ss_pred cccCcceeeeecCCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHhCCCccEEEeccCCCCCCCceEEEeeeCC--ce
Q psy7414 227 ESIGQNIVIFEQGGVHTDEKQARHTLDATKVMEQKLKNSLVKLAKILFGDDIQMRWISEYFPFTHPSWELEILLND--KW 304 (320)
Q Consensus 227 ~~~~~~~~~f~~~~~~~~~~q~~h~~~~~~~v~~~LK~tLe~lv~~lFg~~~~~Rw~~ayFPFTePS~EleV~~~g--~W 304 (320)
.. | .++|+.++.++..+..+-.+++|.++.+|+.+|+...+|+++| +|
T Consensus 115 ------~d-f-----------------------~dlkg~ve~ll~~l~~~~~~~~~~~~~~~~~hp~~sa~i~~~g~~~~ 164 (218)
T cd00496 115 ------LT-F-----------------------ADLKGTLEEFAKELFGPITKVRFRPSYFPFTEPSFEVDVYCPGCLGW 164 (218)
T ss_pred ------CC-H-----------------------HHHHHHHHHHHHHhcCCCceeEecCCcCCCCCCcEEEEEEeCCCCCe
Confidence 11 2 6899999999988732112478899999999999999999988 89
Q ss_pred EEEeecccccccccCC
Q psy7414 305 VEILGCGVIRHEILDR 320 (320)
Q Consensus 305 LEvLGCGvv~~~vL~~ 320 (320)
-+|+.||.+||+|+++
T Consensus 165 ~~iG~~G~lhP~vl~~ 180 (218)
T cd00496 165 LEILGCGMVRPEVLEN 180 (218)
T ss_pred EEEEecccccHHHHHH
Confidence 9999999999999863
No 14
>TIGR02367 PylS pyrrolysyl-tRNA synthetase. PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, such as trimethylamine methyltransferase.
Probab=99.40 E-value=2.8e-12 Score=128.88 Aligned_cols=110 Identities=18% Similarity=0.306 Sum_probs=92.4
Q ss_pred CCCCCChHHHHHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccccCCCCCCCCCCCCCccccccccccccccCch
Q psy7414 66 HNKKYHPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSKNDCYYVNREYLLRAHTTA 145 (320)
Q Consensus 66 ~~~~~HPl~il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~L~~P~DHPsR~~~DTyYin~~~lLRTHTSA 145 (320)
+.|..||+..+.+.|++.|.. +| |..+.. |+.+....||.++.+.++. -.++.|++++.++||+..++
T Consensus 235 TiG~~~~~~~Led~IRevfvg-----~G---FqEV~T--PtLt~eE~~E~m~~~~g~e--I~n~Iyk~ee~lvLRPdLTP 302 (453)
T TIGR02367 235 AEDREDYLGKLERDITKFFVD-----RG---FLEIKS--PILIPAEYIERMGIDNDTE--LSKQIFRVDKNFCLRPMLAP 302 (453)
T ss_pred ccCcccHHHHHHHHHHHHHHH-----CC---CEEEEC--CeecchHHHHhhcCccCCc--ccccceEecCceEecccCHH
Confidence 678999999999999999975 35 888865 7776667789999876643 45677888888999999998
Q ss_pred hhHHHHHcC------CCeEEEecccccCCCcCCCCCCcceeeeEEEEe
Q psy7414 146 HQSELIRMG------LDNFVVFGDVYRRDQIDSTHFPVFHQADGVHLL 187 (320)
Q Consensus 146 hq~~~l~~~------~~~~l~~GdVYRRDeID~tHyPvFHQmEG~~v~ 187 (320)
.-.+.+... +.+++.+|+|||+|+.|++|+.+|||++|+.+.
T Consensus 303 sLaR~La~N~~~l~~PqKIFEIGkVFR~E~~~~thlREF~QL~~eIaG 350 (453)
T TIGR02367 303 NLYNYLRKLDRALPDPIKIFEIGPCYRKESDGKEHLEEFTMLNFCQMG 350 (453)
T ss_pred HHHHHHHHhhhhccCCeeEEEEcCeEecCCCCCCCcCeEEEEEEEEEC
Confidence 888877431 349999999999999999999999999999883
No 15
>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed
Probab=99.08 E-value=5.4e-10 Score=112.01 Aligned_cols=110 Identities=18% Similarity=0.316 Sum_probs=90.3
Q ss_pred CCCCCCChHHHHHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccccCCCCCCCCCCCCCccccccccccccccCc
Q psy7414 65 LHNKKYHPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSKNDCYYVNREYLLRAHTT 144 (320)
Q Consensus 65 l~~~~~HPl~il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~L~~P~DHPsR~~~DTyYin~~~lLRTHTS 144 (320)
.+.|..||+..+.+.|+++|.+ .| |..+.. |..+....||.++.+.+++.+. +.|++++..+||+..+
T Consensus 198 ~~~g~~~~~s~Le~aIR~~f~~-----~G---F~EV~T--PtLt~ee~~e~~g~~~g~~i~~--~my~ideel~LRpsLt 265 (417)
T PRK09537 198 YEEDREDYLGKLERDITKFFVD-----RG---FLEIKS--PILIPAEYIERMGIDNDTELSK--QIFRVDKNFCLRPMLA 265 (417)
T ss_pred hccCCCCHHHHHHHHHHHHHHH-----CC---CEEEEC--CeeecHHHHHHhCCCCcccchh--hheeeCCceEehhhhH
Confidence 3567999999999999999975 35 988865 6666666799999887766553 4588888899999988
Q ss_pred hhhHHHHHcC------CCeEEEecccccCCCcCCCCCCcceeeeEEEE
Q psy7414 145 AHQSELIRMG------LDNFVVFGDVYRRDQIDSTHFPVFHQADGVHL 186 (320)
Q Consensus 145 Ahq~~~l~~~------~~~~l~~GdVYRRDeID~tHyPvFHQmEG~~v 186 (320)
+.-.+.+... +-+++.+|+|||.|+.+.+|++.|+|+++..+
T Consensus 266 PsLlr~la~n~k~~~~P~RIFEIG~VFR~E~~g~~hlrEf~Ql~~~ii 313 (417)
T PRK09537 266 PGLYNYLRKLDRILPDPIKIFEIGPCYRKESDGKEHLEEFTMVNFCQM 313 (417)
T ss_pred HHHHHHHHhhhhcccCCeeEEEEeceEecCCCCCCCcceEEEEEEEEe
Confidence 8877766532 23899999999999999999999999999877
No 16
>PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=99.06 E-value=1.9e-09 Score=110.99 Aligned_cols=180 Identities=20% Similarity=0.250 Sum_probs=136.8
Q ss_pred CCCCCChhhhccCCCCCCCCCCChHHHHHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccccCCCCCCCCCCCCC
Q psy7414 49 DYTNVTPKILSYLNKNLHNKKYHPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSKN 128 (320)
Q Consensus 49 ~~tNvt~~Ils~~gr~l~~~~~HPl~il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~L~~P~DHPsR~~~ 128 (320)
-|.|+|+.... ....+..+|...++++|++.+.. .| |...-+ ...++..+||+.++++.+|+
T Consensus 341 Gyd~i~~~~p~----~~~~~~~~~~~~~~~~ir~~L~~-----~G---f~Ev~t-ys~~s~~~~~~~~~~~~~~~----- 402 (552)
T PRK09616 341 GYNNLEPELPK----VFTIGRLHPIEKLERAIRDLMVG-----LG---FQEVMN-FTLTSEEVLFEKMNLEPEED----- 402 (552)
T ss_pred CcccCCccCCC----CccCCCCChHHHHHHHHHHHHHh-----CC---cceecc-ceEechHHHHHHhCCCCCCC-----
Confidence 46677765322 23346789999999999999964 35 766555 46677777899999998873
Q ss_pred ccccc-----cccccccccCchhhHHHHHcCC-----CeEEEecccccCCCcCCCCCCcceeeeEEEEeeccccccCccC
Q psy7414 129 DCYYV-----NREYLLRAHTTAHQSELIRMGL-----DNFVVFGDVYRRDQIDSTHFPVFHQADGVHLLNRDQVSRGDIG 198 (320)
Q Consensus 129 DTyYi-----n~~~lLRTHTSAhq~~~l~~~~-----~~~l~~GdVYRRDeID~tHyPvFHQmEG~~v~~~~~l~~~~~~ 198 (320)
..-| ++..+|||+..+-..+.++.+. -++|=+|+||+.|+.|.+|..+++++-|+....
T Consensus 403 -~i~l~NPls~e~svLRtsLlpgLL~~~~~N~~~~~~~~lFEiG~Vf~~~~~~~~~~~e~~~l~~~~~g~---------- 471 (552)
T PRK09616 403 -YVEVLNPISEDYTVVRTSLLPSLLEFLSNNKHREYPQKIFEIGDVVLIDESTETGTRTERKLAAAIAHS---------- 471 (552)
T ss_pred -eEEEcCCCccchheEeccchHHHHHHHHhccCCCCCeeEEEeeEEEecCCccccCcchhhEEEEEEECC----------
Confidence 2222 1347999999999998886432 278999999999886677878899998886621
Q ss_pred cccccceecccCCCchhhhhhhhccccccccCcceeeeecCCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHhCCCc
Q psy7414 199 VGTSLKIMTIFTPTSQEYFYIKKCNKISESIGQNIVIFEQGGVHTDEKQARHTLDATKVMEQKLKNSLVKLAKILFGDDI 278 (320)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~q~~h~~~~~~~v~~~LK~tLe~lv~~lFg~~~ 278 (320)
... | .++|+.|+.++..+ | +
T Consensus 472 ---------------------------------~~d-f-----------------------~dlKg~ve~ll~~l-g--i 491 (552)
T PRK09616 472 ---------------------------------EAS-F-----------------------TEIKSVVQALLREL-G--I 491 (552)
T ss_pred ---------------------------------CCC-H-----------------------HHHHHHHHHHHHHc-C--C
Confidence 011 3 68999999999874 5 5
Q ss_pred cEEEeccCCCCCCCceEEEeeeCCceEEEeecccccccccC
Q psy7414 279 QMRWISEYFPFTHPSWELEILLNDKWVEILGCGVIRHEILD 319 (320)
Q Consensus 279 ~~Rw~~ayFPFTePS~EleV~~~g~WLEvLGCGvv~~~vL~ 319 (320)
++.|.++.+||.+|+...+|+.+|+ +|+-.|.+||+|++
T Consensus 492 ~~~~~~~~~~~~hPg~sa~I~~~g~--~iG~iG~lhP~v~~ 530 (552)
T PRK09616 492 EYEVEESEHPSFIPGRCADILVNGK--KIGVIGEIHPEVLE 530 (552)
T ss_pred eEEEecCCCCcccCCceEEEEECCE--EEEEEEEECHHHHH
Confidence 6788999999999999999999886 47778999999875
No 17
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ.
Probab=99.02 E-value=3.7e-09 Score=92.15 Aligned_cols=169 Identities=15% Similarity=0.142 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccccCCCCCCCCCCCCCccccccccccccccCchhhHHHHHc
Q psy7414 74 CMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSKNDCYYVNREYLLRAHTTAHQSELIRM 153 (320)
Q Consensus 74 ~il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~L~~P~DHPsR~~~DTyYin~~~lLRTHTSAhq~~~l~~ 153 (320)
..+++.++++|.+ .| |..+.. |..+....++.++.. +.+-..-+-.-+...+||+.......+.+..
T Consensus 3 ~~~~~~~r~~l~~-----~G---f~Ev~t--~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~LR~s~~~~l~~~~~~ 69 (211)
T cd00768 3 SKIEQKLRRFMAE-----LG---FQEVET--PIVEREPLLEKAGHE---PKDLLPVGAENEEDLYLRPTLEPGLVRLFVS 69 (211)
T ss_pred HHHHHHHHHHHHH-----cC---CEEeEc--ceecHHHHHHHcCcc---HhheeeeecCCCCEEEECCCCcHHHHHHHHh
Confidence 3466677777754 35 877754 444333334444332 1111111112235679999999988888865
Q ss_pred ----CCCeEEEecccccCCCcCC--CCCCcceeeeEEEEeeccccccCccCcccccceecccCCCchhhhhhhhcccccc
Q psy7414 154 ----GLDNFVVFGDVYRRDQIDS--THFPVFHQADGVHLLNRDQVSRGDIGVGTSLKIMTIFTPTSQEYFYIKKCNKISE 227 (320)
Q Consensus 154 ----~~~~~l~~GdVYRRDeID~--tHyPvFHQmEG~~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (320)
..-+++-+|+|||.+.-+. +|+.+|.|+++.......+
T Consensus 70 n~~~~~~~lfeig~vfr~e~~~~~~~~~~ef~~l~~~~~g~~~~------------------------------------ 113 (211)
T cd00768 70 HIRKLPLRLAEIGPAFRNEGGRRGLRRVREFTQLEGEVFGEDGE------------------------------------ 113 (211)
T ss_pred hcccCCEEEEEEcceeecCCCccccccceeEEEcCEEEEcCCch------------------------------------
Confidence 3348999999999986555 7899999999998841110
Q ss_pred ccCcceeeeecCCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHhCCCccEEEe-ccC---C-CCCCCceEEEeeeC-
Q psy7414 228 SIGQNIVIFEQGGVHTDEKQARHTLDATKVMEQKLKNSLVKLAKILFGDDIQMRWI-SEY---F-PFTHPSWELEILLN- 301 (320)
Q Consensus 228 ~~~~~~~~f~~~~~~~~~~q~~h~~~~~~~v~~~LK~tLe~lv~~lFg~~~~~Rw~-~ay---F-PFTePS~EleV~~~- 301 (320)
...-..++|+.++.+++.+ |-+...+|. ... + |...++++|.++..
T Consensus 114 ---------------------------~~~~~~~~~~~~~~~l~~l-g~~~~~~~~~~~~~~~~~~~~g~~~~i~~~~~~ 165 (211)
T cd00768 114 ---------------------------EASEFEELIELTEELLRAL-GIKLDIVFVEKTPGEFSPGGAGPGFEIEVDHPE 165 (211)
T ss_pred ---------------------------hHHHHHHHHHHHHHHHHHc-CCCcceEEEecCchhhccccCCceEEEEEEccC
Confidence 0011368999999999877 433356676 333 2 36778888888643
Q ss_pred CceEEEeecccccccccC
Q psy7414 302 DKWVEILGCGVIRHEILD 319 (320)
Q Consensus 302 g~WLEvLGCGvv~~~vL~ 319 (320)
++|.||+.||.++|++++
T Consensus 166 ~~~~eig~~g~~~~~~~~ 183 (211)
T cd00768 166 GRGLEIGSGGYRQDEQAR 183 (211)
T ss_pred CCeEEEeeceeecCchhH
Confidence 568999999999999875
No 18
>PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed
Probab=98.31 E-value=1e-06 Score=90.53 Aligned_cols=114 Identities=20% Similarity=0.313 Sum_probs=81.1
Q ss_pred ccccccCchhhHHHHHc----CC--CeEEEecccccCCC-cCCCCCCcceeeeEEEEeeccccccCccCcccccceeccc
Q psy7414 137 YLLRAHTTAHQSELIRM----GL--DNFVVFGDVYRRDQ-IDSTHFPVFHQADGVHLLNRDQVSRGDIGVGTSLKIMTIF 209 (320)
Q Consensus 137 ~lLRTHTSAhq~~~l~~----~~--~~~l~~GdVYRRDe-ID~tHyPvFHQmEG~~v~~~~~l~~~~~~~~~~~~~~~~~ 209 (320)
.+||||..+...+.++. +. -++|-+|+|||+|+ -|++|...+++..+| . .+
T Consensus 184 svLRtSLlPGLL~tLs~Nl~Rg~~piRLFEIGRVFr~d~~eE~t~La~llsGs~W-~----------~~----------- 241 (529)
T PRK06253 184 LTLRSHMTSGWFITLSSLLEKRPLPIKLFSIDRCFRREQREDASRLMTYHSASCV-I----------AD----------- 241 (529)
T ss_pred CccccchHHHHHHHHHHHHhCCCCCEEEEEEeeEEecCCccchhheeEEEEcccc-c----------cC-----------
Confidence 48999999988877642 22 28999999999963 378888888887554 2 00
Q ss_pred CCCchhhhhhhhccccccccCcceeeeecCCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHhCCCccEEEecc--CC
Q psy7414 210 TPTSQEYFYIKKCNKISESIGQNIVIFEQGGVHTDEKQARHTLDATKVMEQKLKNSLVKLAKILFGDDIQMRWISE--YF 287 (320)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~q~~h~~~~~~~v~~~LK~tLe~lv~~lFg~~~~~Rw~~a--yF 287 (320)
.+++ | .++|+.++.|+.. ||-. ++++.++ -.
T Consensus 242 ---------------------e~vD-F-----------------------fDlKGiLE~LL~~-LGI~-~i~f~pse~~~ 274 (529)
T PRK06253 242 ---------------------EDVT-V-----------------------DDGKAVAEGLLSQ-FGFT-KFKFRPDEKRS 274 (529)
T ss_pred ---------------------CCCC-H-----------------------HHHHHHHHHHHHH-cCCC-eEEEeecccCC
Confidence 1122 2 6899999999987 4632 3677765 33
Q ss_pred CCCCCceEEEeee----CCceEEEeecccccccccC
Q psy7414 288 PFTHPSWELEILL----NDKWVEILGCGVIRHEILD 319 (320)
Q Consensus 288 PFTePS~EleV~~----~g~WLEvLGCGvv~~~vL~ 319 (320)
|+=+|..+.+|+. .++|.||+.+|++||+||+
T Consensus 275 p~fHPGRSAeI~v~hp~~dGwkeIG~fGELHP~VLk 310 (529)
T PRK06253 275 KYYTPDTQTEVYAYHPKLDGWVEVATFGIYSPVALA 310 (529)
T ss_pred CCcCCCeEEEEEEEeecCCCCEEEEEEEEECHHHHH
Confidence 4226666666665 2569999999999999985
No 19
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain. This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=98.17 E-value=1.7e-05 Score=75.32 Aligned_cols=95 Identities=18% Similarity=0.274 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccccCC--CCCCCCCCCCCccccccccccccccCchhhHHHH
Q psy7414 74 CMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLL--VAKDHVSRSKNDCYYVNREYLLRAHTTAHQSELI 151 (320)
Q Consensus 74 ~il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~L~--~P~DHPsR~~~DTyYin~~~lLRTHTSAhq~~~l 151 (320)
+.+.+.|+++|.+. | |..++. |+.+.... |.-. |+-++- +. +++.-||+=.--+-..++
T Consensus 5 s~i~~~ir~~f~~~-----g---f~ev~t--P~l~~~~~-~~~~~~f~~~~~--~~------g~~~~L~~Spql~~~~~~ 65 (269)
T cd00669 5 SKIIKAIRDFMDDR-----G---FLEVET--PMLQKITG-GAGARPFLVKYN--AL------GLDYYLRISPQLFKKRLM 65 (269)
T ss_pred HHHHHHHHHHHHHC-----C---CEEEEC--CEEeccCC-ccccceEEeeec--CC------CCcEEeecCHHHHHHHHH
Confidence 45677888888653 4 887754 66643211 1111 111110 11 334444432222233455
Q ss_pred HcCCCeEEEecccccCCCcCCCCCCcceeeeEEEEe
Q psy7414 152 RMGLDNFVVFGDVYRRDQIDSTHFPVFHQADGVHLL 187 (320)
Q Consensus 152 ~~~~~~~l~~GdVYRRDeID~tHyPvFHQmEG~~v~ 187 (320)
..+.++++.+|.|||+|+.|++|+++|+|+|+-..+
T Consensus 66 ~~~~~~vf~i~~~fR~e~~~~~hl~EF~~le~e~~~ 101 (269)
T cd00669 66 VGGLDRVFEINRNFRNEDLRARHQPEFTMMDLEMAF 101 (269)
T ss_pred hcCCCcEEEEecceeCCCCCCCcccceeEEEEEEec
Confidence 677889999999999999999999999999999886
No 20
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain. This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=98.16 E-value=4.7e-05 Score=68.60 Aligned_cols=165 Identities=13% Similarity=0.117 Sum_probs=101.8
Q ss_pred HHHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccccCCCCCCCCCCCCCccccc--------cccccccccCchh
Q psy7414 75 MLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSKNDCYYV--------NREYLLRAHTTAH 146 (320)
Q Consensus 75 il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~L~~P~DHPsR~~~DTyYi--------n~~~lLRTHTSAh 146 (320)
.+++.|++++.+.+. ..| |..+.. |++...+.|..-+ |...-..+.|.+ ++..+||.=+++.
T Consensus 3 ~~~~~l~~~~~~~~~-~~G---~~ei~~--P~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~LrP~~~~~ 72 (235)
T cd00670 3 ALWRALERFLDDRMA-EYG---YQEILF--PFLAPTVLFFKGG----HLDGYRKEMYTFEDKGRELRDTDLVLRPAACEP 72 (235)
T ss_pred HHHHHHHHHHHHHHH-HcC---CEEEEC--CeEcCHHHHhhcC----CcccchhhcCeeccCcccccCCeEEEecCCCHH
Confidence 355666666554432 235 777653 5554444443332 443334444555 2457899888887
Q ss_pred hHHHHHcC-------CCeEEEecccccCCCcC---CCCCCcceeeeEEEEeeccccccCccCcccccceecccCCCchhh
Q psy7414 147 QSELIRMG-------LDNFVVFGDVYRRDQID---STHFPVFHQADGVHLLNRDQVSRGDIGVGTSLKIMTIFTPTSQEY 216 (320)
Q Consensus 147 q~~~l~~~-------~~~~l~~GdVYRRDeID---~tHyPvFHQmEG~~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 216 (320)
..+.+.+. +-++...|.|||++.-- ..-+-+|+|.|...+.+.+
T Consensus 73 i~~~~~~~~~~~~~lP~r~~~~g~~fR~E~~~~~gl~R~reF~q~e~~~~~~~~-------------------------- 126 (235)
T cd00670 73 IYQIFSGEILSYRALPLRLDQIGPCFRHEPSGRRGLMRVREFRQVEYVVFGEPE-------------------------- 126 (235)
T ss_pred HHHHHhccCccchhcCeeeeeecccccCCCCCCCCChhheeeeeceEEEEcCHH--------------------------
Confidence 77777542 23788899999999754 2345689999999884221
Q ss_pred hhhhhccccccccCcceeeeecCCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHhCCCccEEEe--ccCC-------
Q psy7414 217 FYIKKCNKISESIGQNIVIFEQGGVHTDEKQARHTLDATKVMEQKLKNSLVKLAKILFGDDIQMRWI--SEYF------- 287 (320)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~q~~h~~~~~~~v~~~LK~tLe~lv~~lFg~~~~~Rw~--~ayF------- 287 (320)
++......+......+++.| |-+.++... +.++
T Consensus 127 -------------------------------------~~~~~~~e~~~~~~~~l~~l-gl~~~i~~~~~~~~~~~~~~~~ 168 (235)
T cd00670 127 -------------------------------------EAEEERREWLELAEEIAREL-GLPVRVVVADDPFFGRGGKRGL 168 (235)
T ss_pred -------------------------------------HHHHHHHHHHHHHHHHHHHc-CCcEEEEEccChhhccCCcccc
Confidence 11111234555555556665 545454443 3344
Q ss_pred -CCCCCceEEEeeeC--CceEEEeecccc
Q psy7414 288 -PFTHPSWELEILLN--DKWVEILGCGVI 313 (320)
Q Consensus 288 -PFTePS~EleV~~~--g~WLEvLGCGvv 313 (320)
+|..|++|++++.. |+|.||.+++.-
T Consensus 169 ~~~~~~~~d~e~~~~~~g~~~~i~~~~~~ 197 (235)
T cd00670 169 DAGRETVVEFELLLPLPGRAKETAVGSAN 197 (235)
T ss_pred ccccCCceEEEEEecCCCCceeeeEEEee
Confidence 89999999999986 589999988764
No 21
>PRK09350 poxB regulator PoxA; Provisional
Probab=97.87 E-value=4.4e-05 Score=73.63 Aligned_cols=96 Identities=17% Similarity=0.249 Sum_probs=66.3
Q ss_pred HHHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccccCCCCCCCCCCCCCccccc-----cccccccccCchhhHH
Q psy7414 75 MLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSKNDCYYV-----NREYLLRAHTTAHQSE 149 (320)
Q Consensus 75 il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~L~~P~DHPsR~~~DTyYi-----n~~~lLRTHTSAhq~~ 149 (320)
.+.+.|+++|.+ .| |..++ .|+.+...++++...|- ..+ |+. ++...|||=.--+-.+
T Consensus 10 ~i~~~ir~~f~~-----~g---f~EV~--TP~l~~~~~~~~~~~~f------~~~-y~~~~~~~~~~~~L~~SPe~~~kr 72 (306)
T PRK09350 10 KIIAEIRRFFAD-----RG---VLEVE--TPILSQATVTDIHLVPF------ETR-FVGPGASQGKTLWLMTSPEYHMKR 72 (306)
T ss_pred HHHHHHHHHHHH-----CC---CEEEE--CCeEecccCCCccCCce------eee-eccccccCCcceEEecCHHHHHHH
Confidence 466777777865 35 88885 48888777888765442 111 221 3445565322222234
Q ss_pred HHHcCCCeEEEecccccCCCcCCCCCCcceeeeEEEEe
Q psy7414 150 LIRMGLDNFVVFGDVYRRDQIDSTHFPVFHQADGVHLL 187 (320)
Q Consensus 150 ~l~~~~~~~l~~GdVYRRDeID~tHyPvFHQmEG~~v~ 187 (320)
++.++..+++.+|.|||.++.++.|.|+|+|+|.-+++
T Consensus 73 ~la~~~~rvf~i~~~FR~e~~~~~H~~EFt~lE~y~~~ 110 (306)
T PRK09350 73 LLAAGSGPIFQICKSFRNEEAGRYHNPEFTMLEWYRPH 110 (306)
T ss_pred HhhccccceEEecceeecCCCCCCCCcHHHhhhhhhhC
Confidence 56677789999999999999999999999999998886
No 22
>PTZ00417 lysine-tRNA ligase; Provisional
Probab=97.87 E-value=8.3e-05 Score=77.94 Aligned_cols=95 Identities=22% Similarity=0.312 Sum_probs=62.9
Q ss_pred HHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccccCCCCCCCCCCCCCccccccccccccccCchhhHHHHHcCC
Q psy7414 76 LKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSKNDCYYVNREYLLRAHTTAHQSELIRMGL 155 (320)
Q Consensus 76 l~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~L~~P~DHPsR~~~DTyYin~~~lLRTHTSAhq~~~l~~~~ 155 (320)
+.+.|+++|.+ .| |-.++. |+-+.... ++--.|--.+.. |++.+.-||+=+--+-.+++..|.
T Consensus 259 Ii~aiR~Ff~~-----rG---FlEVeT--PiL~~~~G-GA~a~PF~T~~n------~~d~~lYLriSpEL~lKrLlvgG~ 321 (585)
T PTZ00417 259 IINYLRNFLND-----RG---FIEVET--PTMNLVAG-GANARPFITHHN------DLDLDLYLRIATELPLKMLIVGGI 321 (585)
T ss_pred HHHHHHHHHHH-----CC---eEEEeC--CeeeccCC-cccceeEEeccc------CCCcceEEeecHHHHHHHHHHhCC
Confidence 34445566643 35 887754 66654333 333222211111 345555566555445556666788
Q ss_pred CeEEEecccccCCCcCCCCCCcceeeeEEEEe
Q psy7414 156 DNFVVFGDVYRRDQIDSTHFPVFHQADGVHLL 187 (320)
Q Consensus 156 ~~~l~~GdVYRRDeID~tHyPvFHQmEG~~v~ 187 (320)
++++-+|.|||++.+|++|.|+|+|+|.-..+
T Consensus 322 ~rVfeIgp~FRnE~~~~rHnpEFTmlE~y~ay 353 (585)
T PTZ00417 322 DKVYEIGKVFRNEGIDNTHNPEFTSCEFYWAY 353 (585)
T ss_pred CCEEEEcccccCCCCCCCccceeeeeeeeeec
Confidence 99999999999999999999999999999986
No 23
>TIGR00471 pheT_arch phenylalanyl-tRNA synthetase, beta subunit. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from eukaryotic cytosol, the Archaea, and spirochetes.
Probab=97.66 E-value=0.00065 Score=70.54 Aligned_cols=180 Identities=20% Similarity=0.218 Sum_probs=117.8
Q ss_pred CCCCCChhhhccCCCCCCCCCCChHHHHHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccccCCCCCCCCCCCCC
Q psy7414 49 DYTNVTPKILSYLNKNLHNKKYHPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSKN 128 (320)
Q Consensus 49 ~~tNvt~~Ils~~gr~l~~~~~HPl~il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~L~~P~DHPsR~~~ 128 (320)
-|.|+++..... ...+..+|...+++.|++.+.. .| |...-+ -..++...+|+.++++.+-
T Consensus 344 Gyd~I~~~~p~~----~~~~~~~~~~~~~~~ir~~L~~-----~G---f~E~it-ysf~s~~~~~~~~~~~~~~------ 404 (551)
T TIGR00471 344 GYNNFPPELPLI----NTIGRLKPLNKVSDIIREIMVG-----LG---FQEVIP-LTLTSEEVNFKRMRIEDNN------ 404 (551)
T ss_pred CcccCCccCCCc----cccCCcChHHHHHHHHHHHHHh-----CC---ceeecc-ceEccHHHHHHHhccCCCC------
Confidence 456776653221 2235788999999999999964 25 665544 3455665667888877541
Q ss_pred ccccc-c----ccccccccCchhhHHHHHcCC-----CeEEEecccccCCCcCCCCCCcceeeeEEEEeeccccccCccC
Q psy7414 129 DCYYV-N----REYLLRAHTTAHQSELIRMGL-----DNFVVFGDVYRRDQIDSTHFPVFHQADGVHLLNRDQVSRGDIG 198 (320)
Q Consensus 129 DTyYi-n----~~~lLRTHTSAhq~~~l~~~~-----~~~l~~GdVYRRDeID~tHyPvFHQmEG~~v~~~~~l~~~~~~ 198 (320)
..=| | +..+|||.--..-.+.++.+. -++|=+|+||..|+=+..+...+.++=|+...
T Consensus 405 -~v~l~NPis~e~s~lR~SLlp~LL~~~~~N~~~~~~~~lFEiG~Vf~~~~~~~~~e~~~~~l~~~~~g----------- 472 (551)
T TIGR00471 405 -DVKVANPKTLEYTIVRTSLLPGLLETLSENKHHELPQKIFEIGDVVVKDDKSETRSRVVTKLAVGITH----------- 472 (551)
T ss_pred -cEEeCCCCchhhhHhHhhhHHHHHHHHHhcccCCCCeeEEEEEEEEEcCCccccccceeeEEEEEEEC-----------
Confidence 1111 1 246899988887777775432 27888999997764111122223333333221
Q ss_pred cccccceecccCCCchhhhhhhhccccccccCcceeeeecCCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHhCCCc
Q psy7414 199 VGTSLKIMTIFTPTSQEYFYIKKCNKISESIGQNIVIFEQGGVHTDEKQARHTLDATKVMEQKLKNSLVKLAKILFGDDI 278 (320)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~q~~h~~~~~~~v~~~LK~tLe~lv~~lFg~~~ 278 (320)
.... ..++|+.|+.++..+ | +
T Consensus 473 --------------------------------~~~d------------------------f~d~Kg~ve~ll~~l-~--i 493 (551)
T TIGR00471 473 --------------------------------SEAN------------------------FNEIKSIVAALAREL-G--I 493 (551)
T ss_pred --------------------------------CCCC------------------------HHHHHHHHHHHHHHc-C--C
Confidence 0011 268999999999865 4 4
Q ss_pred cEEEeccCCCCCCCceEEEeeeCCceEEEeecccccccccCC
Q psy7414 279 QMRWISEYFPFTHPSWELEILLNDKWVEILGCGVIRHEILDR 320 (320)
Q Consensus 279 ~~Rw~~ayFPFTePS~EleV~~~g~WLEvLGCGvv~~~vL~~ 320 (320)
++.|.++..|+=+|..-.+|+++|+ +|+-.|.+||+|+++
T Consensus 494 ~~~~~~~~~~~~hpgrsa~I~~~g~--~iG~iG~ihP~v~~~ 533 (551)
T TIGR00471 494 EYEIEESEHPSFIPGRGAKIVFEGK--AIGHFGEIHPEVLTN 533 (551)
T ss_pred ceEEeecCCCccCCCceEEEEECCc--EEEEEEEECHHHHHh
Confidence 5778888888669999999999886 578889999999863
No 24
>PRK12445 lysyl-tRNA synthetase; Reviewed
Probab=97.41 E-value=0.0011 Score=68.41 Aligned_cols=56 Identities=16% Similarity=0.231 Sum_probs=43.7
Q ss_pred cccccccccccCchhhHHHHHcCCCeEEEecccccCCCcCCCCCCcceeeeEEEEe
Q psy7414 132 YVNREYLLRAHTTAHQSELIRMGLDNFVVFGDVYRRDQIDSTHFPVFHQADGVHLL 187 (320)
Q Consensus 132 Yin~~~lLRTHTSAhq~~~l~~~~~~~l~~GdVYRRDeID~tHyPvFHQmEG~~v~ 187 (320)
|++.+.-||+=.=-+-.+++..|.++++-+|.|||++.+|++|.|+|-|+|.-..+
T Consensus 229 ~~~~~~yL~~SpELylKrlivgG~~rVfeIg~~FRnE~~~~rH~pEFTmlE~y~a~ 284 (505)
T PRK12445 229 ALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFTMMELYMAY 284 (505)
T ss_pred cCCcceeeecCHHHHHHHHHhccCCcEEEEehhccCCCCCCCcCcccceeeeeeec
Confidence 44555556543323333556678899999999999999999999999999999987
No 25
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed
Probab=97.35 E-value=0.0015 Score=67.14 Aligned_cols=56 Identities=21% Similarity=0.313 Sum_probs=43.8
Q ss_pred cccccccccccCchhhHHHHHcCCCeEEEecccccCCCcCCCCCCcceeeeEEEEe
Q psy7414 132 YVNREYLLRAHTTAHQSELIRMGLDNFVVFGDVYRRDQIDSTHFPVFHQADGVHLL 187 (320)
Q Consensus 132 Yin~~~lLRTHTSAhq~~~l~~~~~~~l~~GdVYRRDeID~tHyPvFHQmEG~~v~ 187 (320)
|.+.+.-||+-.=-+-.+++..|.++++-+|.|||.+.+|++|.|+|.|+|.-..+
T Consensus 217 ~~~~~~yL~~Spql~lk~l~v~g~~rVfei~~~FR~E~~~~rH~pEFt~lE~e~a~ 272 (491)
T PRK00484 217 ALDIDLYLRIAPELYLKRLIVGGFERVYEIGRNFRNEGIDTRHNPEFTMLEFYQAY 272 (491)
T ss_pred cCCCceEeccCHHHHHHHHHhccCCcEEEEecceecCCCCCCcCCceEEEEEEEec
Confidence 45566566643322333556678899999999999999999999999999998886
No 26
>PLN02502 lysyl-tRNA synthetase
Probab=97.35 E-value=0.00079 Score=70.30 Aligned_cols=56 Identities=23% Similarity=0.376 Sum_probs=46.6
Q ss_pred cccccccccccCchhhHHHHHcCCCeEEEecccccCCCcCCCCCCcceeeeEEEEe
Q psy7414 132 YVNREYLLRAHTTAHQSELIRMGLDNFVVFGDVYRRDQIDSTHFPVFHQADGVHLL 187 (320)
Q Consensus 132 Yin~~~lLRTHTSAhq~~~l~~~~~~~l~~GdVYRRDeID~tHyPvFHQmEG~~v~ 187 (320)
|++.+.-||+-.--+--+++..|.++++-+|.|||++.+|.+|.|+|.|+|.-..+
T Consensus 274 ~~~~~~yL~~Spel~lK~L~v~g~~rVfeIg~~FRnE~~~~rH~pEFtmlE~y~a~ 329 (553)
T PLN02502 274 DLNMDLYLRIATELHLKRLVVGGFERVYEIGRQFRNEGISTRHNPEFTTCEFYQAY 329 (553)
T ss_pred cCCcceeeecCHHHHHHHHHHhccCCEEEEcCeeeCCCCCCccccceeehhhhhhc
Confidence 55667777765555555667778899999999999999999999999999998776
No 27
>PRK06462 asparagine synthetase A; Reviewed
Probab=97.32 E-value=0.0015 Score=63.85 Aligned_cols=52 Identities=21% Similarity=0.194 Sum_probs=41.4
Q ss_pred cccccccccCchhh-HHHHHcCCCeEEEecccccCCCcCC---CCCCcceeeeEEEEe
Q psy7414 134 NREYLLRAHTTAHQ-SELIRMGLDNFVVFGDVYRRDQIDS---THFPVFHQADGVHLL 187 (320)
Q Consensus 134 n~~~lLRTHTSAhq-~~~l~~~~~~~l~~GdVYRRDeID~---tHyPvFHQmEG~~v~ 187 (320)
++..-| ++|.-. .+++..|.++++-+|.|||.++.|. +|.|+|.|+|.-+.+
T Consensus 82 ~~~~yL--~~Spql~k~ll~~g~~rVfeI~p~FR~E~~~~~~~rHl~EFtmlE~e~~~ 137 (335)
T PRK06462 82 GVEYYL--ADSMILHKQLALRMLGKIFYLSPNFRLEPVDKDTGRHLYEFTQLDIEIEG 137 (335)
T ss_pred CCceee--ccCHHHHHHHHHhhcCcEEEEeccccCCCCCCCCCCCCCchheeeehhhc
Confidence 444444 455422 4666677899999999999999999 999999999998886
No 28
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial. This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms.
Probab=97.23 E-value=0.0011 Score=68.16 Aligned_cols=55 Identities=22% Similarity=0.352 Sum_probs=44.5
Q ss_pred ccccccccccCchhhHHHHHcCCCeEEEecccccCCCcCCCCCCcceeeeEEEEe
Q psy7414 133 VNREYLLRAHTTAHQSELIRMGLDNFVVFGDVYRRDQIDSTHFPVFHQADGVHLL 187 (320)
Q Consensus 133 in~~~lLRTHTSAhq~~~l~~~~~~~l~~GdVYRRDeID~tHyPvFHQmEG~~v~ 187 (320)
++.+.-||+-.=-+-.+++..|.++++-+|.|||++.+|.+|.|+|.++|--..+
T Consensus 218 ~~~~~yLriSpELylKrlivgG~~rVfeIg~~FRnE~~~~rH~pEFTmlE~y~a~ 272 (496)
T TIGR00499 218 LDMDLYLRIAPELYLKRLIVGGFEKVYEIGRNFRNEGVDTTHNPEFTMIEFYQAY 272 (496)
T ss_pred CCCceEEecCHHHHHHHHHhCCCCceEEEecceecCCCCCcccchhheeehhhhc
Confidence 4555567665544444666678899999999999999999999999999998775
No 29
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX. Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown.
Probab=97.19 E-value=0.00087 Score=64.69 Aligned_cols=99 Identities=19% Similarity=0.236 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccccCC--CCCCCCCCCCCccccccccccccccCchhhHHHH
Q psy7414 74 CMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLL--VAKDHVSRSKNDCYYVNREYLLRAHTTAHQSELI 151 (320)
Q Consensus 74 ~il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~L~--~P~DHPsR~~~DTyYin~~~lLRTHTSAhq~~~l 151 (320)
+.+.+.|+++|.+. | |..++. |+.+....=|.-. |+-++-++ + ..++..-|++-.=-+-.+++
T Consensus 5 s~i~~~ir~~f~~~-----g---F~EV~T--P~l~~~~~~e~~~~~F~~~y~~~---~--~~~~~~yL~~Spql~lk~ll 69 (304)
T TIGR00462 5 ARLLAAIRAFFAER-----G---VLEVET--PLLSPAPVTDPHLDAFATEFLGP---D--GEGRPLYLQTSPEYAMKRLL 69 (304)
T ss_pred HHHHHHHHHHHHHC-----C---CEEEEC--CeEecCCCCCcCCcceeeeccCC---C--CCCcceeeecCHHHHHHHHH
Confidence 34667778888652 5 887754 6654332111100 11111111 0 22345555543333333466
Q ss_pred HcCCCeEEEecccccCCCcCCCCCCcceeeeEEEEe
Q psy7414 152 RMGLDNFVVFGDVYRRDQIDSTHFPVFHQADGVHLL 187 (320)
Q Consensus 152 ~~~~~~~l~~GdVYRRDeID~tHyPvFHQmEG~~v~ 187 (320)
..|.++++-+|.|||.+.+|++|.|+|.|+|.-..+
T Consensus 70 ~~g~~rVfeigp~FRaE~~~~rHl~EFtmLE~e~~~ 105 (304)
T TIGR00462 70 AAGSGPIFQICKVFRNGERGRRHNPEFTMLEWYRPG 105 (304)
T ss_pred hccCCCEEEEcCceeCCCCCCCcccHHHhHHHHHHc
Confidence 678899999999999999999999999999997665
No 30
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.
Probab=97.17 E-value=0.0043 Score=59.40 Aligned_cols=95 Identities=17% Similarity=0.250 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccccCCCCCCCCCCCCCccccccccccccccCchhhH--HHH
Q psy7414 74 CMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSKNDCYYVNREYLLRAHTTAHQS--ELI 151 (320)
Q Consensus 74 ~il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~L~~P~DHPsR~~~DTyYin~~~lLRTHTSAhq~--~~l 151 (320)
+.+.+.|+++|.+. | |-.++ +|+.+....=++=-+.-.... ...+.||| + +|+--. .++
T Consensus 5 s~i~~~iR~f~~~~-----g---fiEV~--TP~L~~~~~~g~~~f~~~~~~-~~~~~~~L------~--~Spql~lk~ll 65 (280)
T cd00777 5 SRVIKAIRNFLDEQ-----G---FVEIE--TPILTKSTPEGARDFLVPSRL-HPGKFYAL------P--QSPQLFKQLLM 65 (280)
T ss_pred HHHHHHHHHHHHHC-----C---CEEEe--CCeeecCCCCCCCCceecccc-CCCceeec------c--cCHHHHHHHHH
Confidence 35677888888753 5 87775 477653221011001100110 12334443 2 344222 244
Q ss_pred HcCCCeEEEecccccCCCcCCCCCCcceeeeEEEEe
Q psy7414 152 RMGLDNFVVFGDVYRRDQIDSTHFPVFHQADGVHLL 187 (320)
Q Consensus 152 ~~~~~~~l~~GdVYRRDeID~tHyPvFHQmEG~~v~ 187 (320)
..|.++++.+|.|||.++.+..|.++|+|+|.-..+
T Consensus 66 ~~g~~~v~~i~~~fR~e~~~~~r~~Ef~~~e~e~~~ 101 (280)
T cd00777 66 VSGFDRYFQIARCFRDEDLRADRQPEFTQIDIEMSF 101 (280)
T ss_pred hcCcCcEEEeccceeCCCCCCCccceeEEeEeeecc
Confidence 567899999999999999999999999999999886
No 31
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=97.14 E-value=0.0034 Score=61.31 Aligned_cols=52 Identities=23% Similarity=0.333 Sum_probs=41.5
Q ss_pred cccccccccCchhhH--HHHHcCCCeEEEecccccCCCcCCCCCCcceeeeEEEEe
Q psy7414 134 NREYLLRAHTTAHQS--ELIRMGLDNFVVFGDVYRRDQIDSTHFPVFHQADGVHLL 187 (320)
Q Consensus 134 n~~~lLRTHTSAhq~--~~l~~~~~~~l~~GdVYRRDeID~tHyPvFHQmEG~~v~ 187 (320)
++..-| +||+... .++..|..+++.+|.|||.++.|+.|.|+|.|+|.-+.+
T Consensus 55 ~~~~yL--~~Spql~~k~ll~~g~~~vf~i~~~FR~E~~~~rHl~EFt~le~e~~~ 108 (329)
T cd00775 55 DMDLYL--RIAPELYLKRLIVGGFERVYEIGRNFRNEGIDLTHNPEFTMIEFYEAY 108 (329)
T ss_pred Ccceee--ccCHHHHHHHHHhcCCCcEEEEeccccCCCCCCCCCCceEEEEEeeec
Confidence 444444 3666444 344568899999999999999999999999999998886
No 32
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=97.13 E-value=0.0015 Score=73.12 Aligned_cols=56 Identities=20% Similarity=0.309 Sum_probs=44.0
Q ss_pred cccccccccccCchhhHHHHHcCCCeEEEecccccCCCcCCCCCCcceeeeEEEEe
Q psy7414 132 YVNREYLLRAHTTAHQSELIRMGLDNFVVFGDVYRRDQIDSTHFPVFHQADGVHLL 187 (320)
Q Consensus 132 Yin~~~lLRTHTSAhq~~~l~~~~~~~l~~GdVYRRDeID~tHyPvFHQmEG~~v~ 187 (320)
|.+.+.-||+=.--+-.+++-.|.++++-+|+|||++.+|.+|.|+|.|+|.-..+
T Consensus 815 ~~~~~~yLriSPELylKrLivgG~erVFEIg~~FRnE~~~~rHnpEFTmLE~y~a~ 870 (1094)
T PRK02983 815 AYDMDLYLRIAPELYLKRLCVGGVERVFELGRNFRNEGVDATHNPEFTLLEAYQAH 870 (1094)
T ss_pred CCCccchhhcChHHHHHHHHhcccCceEEEcceecCCCCCCCccccccchhhhhhc
Confidence 45555556654433444556678899999999999999999999999999998776
No 33
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B ....
Probab=97.08 E-value=0.0024 Score=61.81 Aligned_cols=46 Identities=17% Similarity=0.369 Sum_probs=37.5
Q ss_pred cCchhhH--HHHHcCCCeEEEecccccCCCc-CCCCCCcceeeeEEEEe
Q psy7414 142 HTTAHQS--ELIRMGLDNFVVFGDVYRRDQI-DSTHFPVFHQADGVHLL 187 (320)
Q Consensus 142 HTSAhq~--~~l~~~~~~~l~~GdVYRRDeI-D~tHyPvFHQmEG~~v~ 187 (320)
++|.-.. .++..|.++++-+|.|||.++. |..|.|+|.|+|.-..+
T Consensus 78 ~~Spql~~k~ll~~g~~~vf~i~~~FR~E~~~~~rHl~EFtmLE~e~a~ 126 (335)
T PF00152_consen 78 TQSPQLYLKRLLAAGLERVFEIGPCFRNEESRTRRHLPEFTMLEWEMAF 126 (335)
T ss_dssp -SSSHHHHHHHHHTTHSEEEEEEEEE-BSSSCBTTBSSEEEEEEEEEET
T ss_pred CcChHHHHhhhccccchhhhheecceeccCcccccchhhhhhhhhcccc
Confidence 4455443 4666778999999999999999 99999999999999986
No 34
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional
Probab=97.03 E-value=0.0034 Score=63.49 Aligned_cols=56 Identities=16% Similarity=0.339 Sum_probs=41.2
Q ss_pred cccccccccccCchhhHHHHHcCCCeEEEecccccCCCcCC-CCCCcceeeeEEEEe
Q psy7414 132 YVNREYLLRAHTTAHQSELIRMGLDNFVVFGDVYRRDQIDS-THFPVFHQADGVHLL 187 (320)
Q Consensus 132 Yin~~~lLRTHTSAhq~~~l~~~~~~~l~~GdVYRRDeID~-tHyPvFHQmEG~~v~ 187 (320)
|.+...-|++=.--+-..++..|.++++-+|.|||.++.|+ .|.|+|.|+|.-..|
T Consensus 179 ~~~~~~~L~~Spql~~q~l~~~g~~rVf~i~~~FR~E~~~t~rHl~EFt~lE~e~a~ 235 (437)
T PRK05159 179 YFEKEAYLAQSPQLYKQMMVGAGFERVFEIGPVFRAEEHNTSRHLNEYTSIDVEMGF 235 (437)
T ss_pred ecCCceEecCCHHHHHHHHHhcCCCcEEEEeceeeCCCCCCcccchhhheeeeeeee
Confidence 44555555432222222444566899999999999999996 799999999999887
No 35
>PTZ00385 lysyl-tRNA synthetase; Provisional
Probab=97.01 E-value=0.0042 Score=66.18 Aligned_cols=55 Identities=22% Similarity=0.375 Sum_probs=43.2
Q ss_pred ccccccccccCchhhHHHHHcCCCeEEEecccccCCCcCCCCCCcceeeeEEEEe
Q psy7414 133 VNREYLLRAHTTAHQSELIRMGLDNFVVFGDVYRRDQIDSTHFPVFHQADGVHLL 187 (320)
Q Consensus 133 in~~~lLRTHTSAhq~~~l~~~~~~~l~~GdVYRRDeID~tHyPvFHQmEG~~v~ 187 (320)
.+.+.-||+-.=-+-.+++..|.++++-+|.|||++.+|++|.|+|.|||.-..+
T Consensus 279 ~~~~~yL~~SPELylKrLivgG~erVyeIg~~FRnE~~~~rH~pEFTmlE~y~a~ 333 (659)
T PTZ00385 279 NAMDLFLRVAPELHLKQCIVGGMERIYEIGKVFRNEDADRSHNPEFTSCEFYAAY 333 (659)
T ss_pred CCCCEEecCChHHHHHHHhhcccCCEEEEeceecCCCCCCCccccccceeeeeec
Confidence 4445556554433334566678899999999999999999999999999999885
No 36
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn).
Probab=96.97 E-value=0.0054 Score=62.00 Aligned_cols=54 Identities=19% Similarity=0.370 Sum_probs=41.2
Q ss_pred cccccccccccCchhhH--HHHHcCCCeEEEecccccCCCcCC-CCCCcceeeeEEEEe
Q psy7414 132 YVNREYLLRAHTTAHQS--ELIRMGLDNFVVFGDVYRRDQIDS-THFPVFHQADGVHLL 187 (320)
Q Consensus 132 Yin~~~lLRTHTSAhq~--~~l~~~~~~~l~~GdVYRRDeID~-tHyPvFHQmEG~~v~ 187 (320)
|.++..-|+ +|+-.. .++..|.++++-+|.|||.+..|+ .|.|+|.|+|.-..+
T Consensus 176 ~~~~~~yL~--~Spql~~q~li~~g~~rVf~i~~~FR~E~~~t~rHl~EFt~lE~e~a~ 232 (428)
T TIGR00458 176 YFEREAFLG--QSPQLYKQQLMAAGFERVYEIGPIFRAEEHNTHRHLNEATSIDIEMAF 232 (428)
T ss_pred ecCCcEEEC--cCHHHHHHHHHhcccCcEEEEecccccCCCCCccchheeeEeeeeecc
Confidence 334444443 444333 345677899999999999999996 799999999999886
No 37
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=96.96 E-value=0.0063 Score=59.18 Aligned_cols=55 Identities=18% Similarity=0.343 Sum_probs=40.4
Q ss_pred cccccccccccCchhhHHHHHcCCCeEEEecccccCCCcCC-CCCCcceeeeEEEEe
Q psy7414 132 YVNREYLLRAHTTAHQSELIRMGLDNFVVFGDVYRRDQIDS-THFPVFHQADGVHLL 187 (320)
Q Consensus 132 Yin~~~lLRTHTSAhq~~~l~~~~~~~l~~GdVYRRDeID~-tHyPvFHQmEG~~v~ 187 (320)
|.++..-|++=.--|-..++ .+.++++.+|.|||+++.|. +|.|+|.|+|.-+.+
T Consensus 67 ~~~~~~yL~~Spql~lk~l~-~~~~~vf~i~~~FR~E~~~~~rHl~EFtmlE~e~~~ 122 (322)
T cd00776 67 YFGKPAYLAQSPQLYKEMLI-AALERVYEIGPVFRAEKSNTRRHLSEFWMLEAEMAF 122 (322)
T ss_pred cCCCcceecCCHHHHHHHHH-HhhhhhEEeccccccCCCCcCCCcceeeccceeeec
Confidence 55666666532222222333 34789999999999999886 899999999999886
No 38
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed
Probab=96.82 E-value=0.0026 Score=62.75 Aligned_cols=113 Identities=19% Similarity=0.241 Sum_probs=80.0
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhhcccCCCCCCceEEecCCCCeecceecccc-CCCCCCCCCCCCCccccc----cccc
Q psy7414 63 KNLHNKKYHPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDS-LLVAKDHVSRSKNDCYYV----NREY 137 (320)
Q Consensus 63 r~l~~~~~HPl~il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~-L~~P~DHPsR~~~DTyYi----n~~~ 137 (320)
+.++....+....+++.|++.|.+ +| |..+.. |++...+.|-. .+-..+|+. .+.|=+ ++..
T Consensus 11 ~d~~p~~~~~~~~i~~~i~~~~~~-----~G---y~ei~t--P~le~~~~~~~~~g~~~~~~~---~~~~~~~d~~g~~l 77 (412)
T PRK00037 11 RDILPEESAKWQYVEDTIREVFER-----YG---FSEIRT--PIFEYTELFKRKVGEETDIVE---KEMYTFQDKGGRSL 77 (412)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHH-----cC---CeEeec--cccchHHHhccccCccccccc---ceeEEEEcCCCCEE
Confidence 455566778888899999998864 46 887754 66655555422 222222332 234433 2358
Q ss_pred cccccCchhhHHHHHcC---CCeEEEecccccCCCcCCCCCCcceeeeEEEEee
Q psy7414 138 LLRAHTTAHQSELIRMG---LDNFVVFGDVYRRDQIDSTHFPVFHQADGVHLLN 188 (320)
Q Consensus 138 lLRTHTSAhq~~~l~~~---~~~~l~~GdVYRRDeID~tHyPvFHQmEG~~v~~ 188 (320)
+||.+.|+.-++.+... +-++..+|+|||++..+..|+-+|+|.++-.+..
T Consensus 78 ~LRpd~T~~~ar~~~~~~~~p~r~~~~g~vfR~e~~~~gr~ref~Q~g~ei~g~ 131 (412)
T PRK00037 78 TLRPEGTAPVVRAVIEHKLQPFKLYYIGPMFRYERPQKGRYRQFHQFGVEVIGS 131 (412)
T ss_pred EecCCCcHHHHHHHHhCCCCCeEEEEEcCccccCCCCCCcccceEEcCeeeeCC
Confidence 99999999888887643 3599999999999999999999999998876643
No 39
>TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences.
Probab=96.67 E-value=0.015 Score=61.23 Aligned_cols=45 Identities=18% Similarity=0.319 Sum_probs=38.1
Q ss_pred CchhhH--HHHHcCCCeEEEecccccCCCcCCCCCCcceeeeEEEEe
Q psy7414 143 TTAHQS--ELIRMGLDNFVVFGDVYRRDQIDSTHFPVFHQADGVHLL 187 (320)
Q Consensus 143 TSAhq~--~~l~~~~~~~l~~GdVYRRDeID~tHyPvFHQmEG~~v~ 187 (320)
+|+-+. .+|..|.++++-+|.|||.+..+++|.|+|.|+|.-..|
T Consensus 192 qSpQlykq~l~v~G~ervfqI~~~FR~E~~~t~r~pEFT~le~E~af 238 (583)
T TIGR00459 192 QSPQLFKQLLMVSGVDRYYQIARCFRDEDLRADRQPEFTQIDMEMSF 238 (583)
T ss_pred CCHHHHHHHHHhcccCcEEEEcceeeCCCCCCCCCcccCcceeeecC
Confidence 455443 345678899999999999999999999999999999887
No 40
>TIGR00457 asnS asparaginyl-tRNA synthetase. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn.
Probab=96.60 E-value=0.013 Score=59.82 Aligned_cols=39 Identities=21% Similarity=0.402 Sum_probs=34.2
Q ss_pred HHHHcCCCeEEEecccccCCCcC-CCCCCcceeeeEEEEe
Q psy7414 149 ELIRMGLDNFVVFGDVYRRDQID-STHFPVFHQADGVHLL 187 (320)
Q Consensus 149 ~~l~~~~~~~l~~GdVYRRDeID-~tHyPvFHQmEG~~v~ 187 (320)
+++..|.++++.+|.|||.+..| .+|.|+|.|+|.-..|
T Consensus 204 q~l~~g~~rVf~i~~~FR~E~~~t~rHl~EFt~le~e~~~ 243 (453)
T TIGR00457 204 ETYALALSKVYTFGPTFRAEKSNTSRHLSEFWMIEPEMAF 243 (453)
T ss_pred HHHhhcccCceEeeeccccCCCCCCcCcchhccceeeeec
Confidence 34456789999999999999999 5999999999998886
No 41
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated
Probab=96.51 E-value=0.019 Score=58.47 Aligned_cols=39 Identities=21% Similarity=0.365 Sum_probs=34.2
Q ss_pred HHHHcCCCeEEEecccccCCCc-CCCCCCcceeeeEEEEe
Q psy7414 149 ELIRMGLDNFVVFGDVYRRDQI-DSTHFPVFHQADGVHLL 187 (320)
Q Consensus 149 ~~l~~~~~~~l~~GdVYRRDeI-D~tHyPvFHQmEG~~v~ 187 (320)
+++..|.++++-+|.|||.++. +..|.|+|.|+|.-..|
T Consensus 201 q~l~~g~~rVf~i~~~FR~E~~~t~rHl~EFt~lE~e~~~ 240 (450)
T PRK03932 201 EAYAMALGKVYTFGPTFRAENSNTRRHLAEFWMIEPEMAF 240 (450)
T ss_pred HHHHhccCCeEEeeeccccCCCCCccccccccccceEEec
Confidence 4455678999999999999999 47999999999999886
No 42
>COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis]
Probab=96.31 E-value=0.003 Score=63.57 Aligned_cols=52 Identities=25% Similarity=0.372 Sum_probs=39.3
Q ss_pred cccccccCchhhH----HHHHcC--CCeEEEecccccCCC-cCCCCCCcceeeeEEEEe
Q psy7414 136 EYLLRAHTTAHQS----ELIRMG--LDNFVVFGDVYRRDQ-IDSTHFPVFHQADGVHLL 187 (320)
Q Consensus 136 ~~lLRTHTSAhq~----~~l~~~--~~~~l~~GdVYRRDe-ID~tHyPvFHQmEG~~v~ 187 (320)
.+-||+|.|+-=- ..+.+. +-++|++.+||||++ -|+||.-..|-.-.+.|.
T Consensus 182 tlTLRSHMTsGWFItLs~i~~r~~~PlklFSIDRCFRREQ~ED~shLmtYhSASCVvvd 240 (536)
T COG2024 182 TLTLRSHMTSGWFITLSEILKREDPPLKLFSIDRCFRREQREDASHLMTYHSASCVVVD 240 (536)
T ss_pred ceehhhhcccceeeeHHHHHhccCCCceeeehhHHhhhhhhcchhhhhhhccceEEEEc
Confidence 4679999776422 233222 348999999999985 499999999999999883
No 43
>TIGR00442 hisS histidyl-tRNA synthetase. This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff.
Probab=96.27 E-value=0.01 Score=58.38 Aligned_cols=112 Identities=18% Similarity=0.240 Sum_probs=77.6
Q ss_pred CCCCCCCChHHHHHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccccCCCC-CCCCCCCCCcccccc----cccc
Q psy7414 64 NLHNKKYHPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVA-KDHVSRSKNDCYYVN----REYL 138 (320)
Q Consensus 64 ~l~~~~~HPl~il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~L~~P-~DHPsR~~~DTyYin----~~~l 138 (320)
.+.....+....+++.|++.|.+ +| |..++ .|++...+.|-.-+-+ .+++. ...|-+. +..+
T Consensus 8 d~~p~~~~~~~~i~~~i~~~f~~-----~G---y~~i~--~P~le~~~~~~~~~g~~~~~~~---~~~~~~~d~~g~~l~ 74 (397)
T TIGR00442 8 DFLPEEMIKWQYIEETIREVFEL-----YG---FKEIR--TPIFEYTELFARKVGEETDIVE---KEMYTFKDKGGRSLT 74 (397)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH-----cC---CeEec--CcccchHHHhhhccCccccccc---cceEEEECCCCCEEe
Confidence 34445567778888888888864 46 88875 4676555555332111 11121 2234332 4579
Q ss_pred ccccCchhhHHHHHcC------CCeEEEecccccCCCcCCCCCCcceeeeEEEEee
Q psy7414 139 LRAHTTAHQSELIRMG------LDNFVVFGDVYRRDQIDSTHFPVFHQADGVHLLN 188 (320)
Q Consensus 139 LRTHTSAhq~~~l~~~------~~~~l~~GdVYRRDeID~tHyPvFHQmEG~~v~~ 188 (320)
||.++|+.-++.+.+. +-++..+|+|||.+..+..|+-+|+|+++-.+..
T Consensus 75 LRpD~T~~iaR~~~~~~~~~~~p~r~~y~g~vfR~e~~~~gr~ref~Q~g~eiig~ 130 (397)
T TIGR00442 75 LRPEGTAPVARAVIENKLLLPKPFKLYYIGPMFRYERPQKGRYRQFHQFGVEVIGS 130 (397)
T ss_pred ecCCCcHHHHHHHHhcccccCCCeEEEEEcCeecCCCCCCCcccceEEcCeeeeCC
Confidence 9999999999987532 2489999999999999999999999999887743
No 44
>PRK00476 aspS aspartyl-tRNA synthetase; Validated
Probab=96.19 E-value=0.035 Score=58.61 Aligned_cols=92 Identities=20% Similarity=0.290 Sum_probs=58.8
Q ss_pred HHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccccCCCCCCCCCC-CCCccccccccccccccCchhhH--HHHH
Q psy7414 76 LKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSR-SKNDCYYVNREYLLRAHTTAHQS--ELIR 152 (320)
Q Consensus 76 l~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~L~~P~DHPsR-~~~DTyYin~~~lLRTHTSAhq~--~~l~ 152 (320)
+...|+++|.+ .| |-.++. |+.+....=++ =|--.|+| ...+.||| ++|+-+. .++.
T Consensus 147 i~~~iR~ff~~-----~g---FiEV~T--P~L~~s~~ega--~~f~v~~~~~~~~~~~L--------~qSpql~kq~l~~ 206 (588)
T PRK00476 147 VTSAIRNFLDD-----NG---FLEIET--PILTKSTPEGA--RDYLVPSRVHPGKFYAL--------PQSPQLFKQLLMV 206 (588)
T ss_pred HHHHHHHHHHH-----CC---CEEEEC--CeeecCCCCCC--ccceecccccCCceeec--------CCCHHHHHHHHHh
Confidence 44556666654 25 877764 66542211011 01112344 23444543 3555544 2456
Q ss_pred cCCCeEEEecccccCCCcCCCCCCcceeeeEEEEe
Q psy7414 153 MGLDNFVVFGDVYRRDQIDSTHFPVFHQADGVHLL 187 (320)
Q Consensus 153 ~~~~~~l~~GdVYRRDeID~tHyPvFHQmEG~~v~ 187 (320)
.|.++++-+|.|||.++.+++|.|+|.|+|--+.|
T Consensus 207 ~g~~rvfqi~~~FR~E~~~~~r~~EFt~le~e~af 241 (588)
T PRK00476 207 AGFDRYYQIARCFRDEDLRADRQPEFTQIDIEMSF 241 (588)
T ss_pred cccCceEEEeceeecCCCCCCcCcccccceeeecC
Confidence 78899999999999999999999999999998886
No 45
>PLN02903 aminoacyl-tRNA ligase
Probab=96.00 E-value=0.057 Score=57.73 Aligned_cols=45 Identities=18% Similarity=0.350 Sum_probs=37.9
Q ss_pred CchhhHH--HHHcCCCeEEEecccccCCCcCCCCCCcceeeeEEEEe
Q psy7414 143 TTAHQSE--LIRMGLDNFVVFGDVYRRDQIDSTHFPVFHQADGVHLL 187 (320)
Q Consensus 143 TSAhq~~--~l~~~~~~~l~~GdVYRRDeID~tHyPvFHQmEG~~v~ 187 (320)
+|+-+.. +|..|.++++-+|.|||.++.++.|.|+|.|+|.-..|
T Consensus 258 qSPQlykQ~Lm~~G~~RvFqIa~~FR~E~~~t~RhpEFTqLE~E~sf 304 (652)
T PLN02903 258 QSPQLFKQMLMVSGFDRYYQIARCFRDEDLRADRQPEFTQLDMELAF 304 (652)
T ss_pred CCHHHHHHHHHhccCCcEEEEehhhccCCCCCCcccceeeeeeeecC
Confidence 4554432 45578899999999999999999999999999998886
No 46
>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional
Probab=95.92 E-value=0.047 Score=58.80 Aligned_cols=45 Identities=16% Similarity=0.316 Sum_probs=37.6
Q ss_pred CchhhH--HHHHcCCCeEEEecccccCCCcCCCCCCcceeeeEEEEe
Q psy7414 143 TTAHQS--ELIRMGLDNFVVFGDVYRRDQIDSTHFPVFHQADGVHLL 187 (320)
Q Consensus 143 TSAhq~--~~l~~~~~~~l~~GdVYRRDeID~tHyPvFHQmEG~~v~ 187 (320)
+|+-+. .+|..|.++++-+|.|||.+..+++|.|+|.|+|.-..|
T Consensus 210 qSPQlykq~lm~~G~~rvfqI~~~FR~E~~~t~r~pEFT~LE~E~af 256 (706)
T PRK12820 210 QSPQLFKQLLMIAGFERYFQLARCFRDEDLRPNRQPEFTQLDIEASF 256 (706)
T ss_pred CCHHHHHHHHHhccCCcEEEEechhcCCCCCCCcCccccccceeecc
Confidence 444443 234578899999999999999999999999999999887
No 47
>COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=95.76 E-value=0.013 Score=57.18 Aligned_cols=95 Identities=21% Similarity=0.322 Sum_probs=67.3
Q ss_pred HHHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccccCCCCCCCCCCCCCccccccc----cccccccCch--hhH
Q psy7414 75 MLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSKNDCYYVNR----EYLLRAHTTA--HQS 148 (320)
Q Consensus 75 il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~L~~P~DHPsR~~~DTyYin~----~~lLRTHTSA--hq~ 148 (320)
.+...|+.||... | |-.++. |+-+..-|=|.=+-|- -|=|+.. ..-|=-|||. |-.
T Consensus 21 ~i~~~iR~FF~er-----g---~lEVeT--p~Ls~a~vtd~hL~~F--------~Te~~~~~~~~~~~l~L~TSPEy~mK 82 (322)
T COG2269 21 AIIAAIRRFFAER-----G---VLEVET--PALSVAPVTDIHLHPF--------ETEFLGPGGAKGKPLWLHTSPEYHMK 82 (322)
T ss_pred HHHHHHHHHHHHc-----C---ceEecc--hHhhcCCCCccceeee--------eeEEeccCccccceeeeecCcHHHHH
Confidence 4677888999753 4 666654 5555554444333221 1333322 2345557876 556
Q ss_pred HHHHcCCCeEEEecccccCCCcCCCCCCcceeeeEEEEe
Q psy7414 149 ELIRMGLDNFVVFGDVYRRDQIDSTHFPVFHQADGVHLL 187 (320)
Q Consensus 149 ~~l~~~~~~~l~~GdVYRRDeID~tHyPvFHQmEG~~v~ 187 (320)
+++.+|...++-.|+|||+.|.-+-|-|+|+++|=.++.
T Consensus 83 rLLAag~~~ifql~kvfRN~E~G~~H~PEFTMLEWYrv~ 121 (322)
T COG2269 83 RLLAAGSGPIFQLGKVFRNEEMGRLHNPEFTMLEWYRVG 121 (322)
T ss_pred HHHHccCCcchhhhHHHhcccccccCCCceeEeeeeccC
Confidence 888999999999999999999999999999999999995
No 48
>PLN02603 asparaginyl-tRNA synthetase
Probab=95.69 E-value=0.1 Score=54.89 Aligned_cols=40 Identities=20% Similarity=0.366 Sum_probs=35.1
Q ss_pred HHHHHcCCCeEEEecccccCCCcC-CCCCCcceeeeEEEEe
Q psy7414 148 SELIRMGLDNFVVFGDVYRRDQID-STHFPVFHQADGVHLL 187 (320)
Q Consensus 148 ~~~l~~~~~~~l~~GdVYRRDeID-~tHyPvFHQmEG~~v~ 187 (320)
.+++..+.++++.+|.+||.+..| ..|.|+|.|+|.=..|
T Consensus 314 ~E~~~~~l~rVy~igp~FRaE~s~T~RHL~EF~mlE~E~af 354 (565)
T PLN02603 314 GETYATALSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAF 354 (565)
T ss_pred HHHHHhcccceEEEecceeCCCCCCccccccceeeeeeeec
Confidence 356667889999999999999998 5999999999988776
No 49
>PLN02265 probable phenylalanyl-tRNA synthetase beta chain
Probab=95.37 E-value=0.13 Score=54.25 Aligned_cols=184 Identities=16% Similarity=0.164 Sum_probs=110.5
Q ss_pred CCCCCChhhhccCCCCCCCCCCChHHHHHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccccCCCCCCCCCCCCC
Q psy7414 49 DYTNVTPKILSYLNKNLHNKKYHPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSKN 128 (320)
Q Consensus 49 ~~tNvt~~Ils~~gr~l~~~~~HPl~il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~L~~P~DHPsR~~~ 128 (320)
-|.|+++.... ....+..+|+..+++.|++.+.. .| |...-. -..++...||+.|+.+.+- .
T Consensus 379 Gydni~~~~P~----~~~~g~~~~~~~~~~~iR~~l~~-----~G---f~Ev~t-~sl~s~~~~~~~~~~~~~~--~--- 440 (597)
T PLN02265 379 GYNNIPKRKPK----SMTVGKQQPLNQFSDLLRAEVAM-----AG---FTEVLT-WILCSHKENFAMLNREDDG--N--- 440 (597)
T ss_pred ccccCCccCCC----cccCCCCCHHHHHHHHHHHHHHH-----CC---ceeeec-eeeCChHHHHHhhcCCccC--C---
Confidence 45677766332 12346889999999999998864 35 665443 2445666779988876431 0
Q ss_pred cccc-cc----ccccccccCchhhHHHHHcCC-----CeEEEecccccCCCcCCCCCCcceeeeEEEEeeccccccCccC
Q psy7414 129 DCYY-VN----REYLLRAHTTAHQSELIRMGL-----DNFVVFGDVYRRDQIDSTHFPVFHQADGVHLLNRDQVSRGDIG 198 (320)
Q Consensus 129 DTyY-in----~~~lLRTHTSAhq~~~l~~~~-----~~~l~~GdVYRRDeID~tHyPvFHQmEG~~v~~~~~l~~~~~~ 198 (320)
+.-- .| +-.+|||---..-.+.++.+. -++|=+|+||-.|+ +.. .+.--+.=-..+..
T Consensus 441 ~~v~I~NP~s~e~~vlRtSLlPgLL~~l~~N~~~~~p~klFEiG~V~~~~~-~~~-~~~~e~~~la~~~~---------- 508 (597)
T PLN02265 441 SAVIIGNPRSADFEVVRTSLLPGLLKTLGHNKDAPKPIKLFEVSDVVLLDE-SKD-VGARNSRRLAALYC---------- 508 (597)
T ss_pred ceEEECCCcchhHHHHHHhhHHHHHHHHHHhhcCCCCeeEEEeEeEEecCC-ccc-CCcchhhEEEEEEE----------
Confidence 1111 12 235888876666666664332 37888999997764 110 11000000000000
Q ss_pred cccccceecccCCCchhhhhhhhccccccccCcceeeeecCCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHhCCC-
Q psy7414 199 VGTSLKIMTIFTPTSQEYFYIKKCNKISESIGQNIVIFEQGGVHTDEKQARHTLDATKVMEQKLKNSLVKLAKILFGDD- 277 (320)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~q~~h~~~~~~~v~~~LK~tLe~lv~~lFg~~- 277 (320)
+ .... | .++|+.|+.++..+ |-.
T Consensus 509 -g------------------------------~~~~-f-----------------------~~ikg~le~ll~~l-~i~~ 532 (597)
T PLN02265 509 -G------------------------------TTSG-F-----------------------EVIHGLVDRIMEVL-GIPF 532 (597)
T ss_pred -C------------------------------CCCC-H-----------------------hhHHHHHHHHHHHc-CCcc
Confidence 0 0011 2 57999999999754 421
Q ss_pred c------cEEEeccCCCCCCCceEEEeeeCCceEEEeecccccccccCC
Q psy7414 278 I------QMRWISEYFPFTHPSWELEILLNDKWVEILGCGVIRHEILDR 320 (320)
Q Consensus 278 ~------~~Rw~~ayFPFTePS~EleV~~~g~WLEvLGCGvv~~~vL~~ 320 (320)
. .+...++..|+=+|.--.+|.++|+ +|+-.|.+||+||++
T Consensus 533 ~~~~~~~~~~~~~~~~~~f~pgr~A~I~~~g~--~iG~iGelhP~vl~~ 579 (597)
T PLN02265 533 VEIGDNNGYYVEPSNEPEYFPGRQASIIYKGK--HVGTFGIVHPEVLNN 579 (597)
T ss_pred cccccCceEEEeecCCccccCCceEEEEECCe--EEEEEEEECHHHHHH
Confidence 1 2322677778569999999999885 577789999999864
No 50
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain. SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer.
Probab=95.20 E-value=0.27 Score=47.26 Aligned_cols=106 Identities=14% Similarity=0.236 Sum_probs=58.8
Q ss_pred CChH-HHHHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccccCCCCCCCCCCCCCcccccc-cccccc-ccCchh
Q psy7414 70 YHPL-CMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSKNDCYYVN-REYLLR-AHTTAH 146 (320)
Q Consensus 70 ~HPl-~il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~L~~P~DHPsR~~~DTyYin-~~~lLR-THTSAh 146 (320)
.+|. ..+.+.|++++.+.+.. .| |..+. .|.+-....+..-+ |-..-..+-|.++ ++++|| ||..++
T Consensus 47 ~~p~g~~l~~~l~~~~~~~~~~-~G---~~ev~--~P~l~~~~l~~~sg----~~~~~~~~~f~v~~~~~~L~pt~e~~~ 116 (297)
T cd00770 47 LKGDGALLERALINFALDFLTK-RG---FTPVI--PPFLVRKEVMEGTG----QLPKFDEQLYKVEGEDLYLIATAEVPL 116 (297)
T ss_pred ECCHHHHHHHHHHHHHHHHHHH-CC---CEEEE--CcccccHHHHhhcC----cCccChhcccEecCCCEEEeecCCHHH
Confidence 4454 45778888888766543 35 77764 46664444444333 1111223445553 344555 455444
Q ss_pred hHHHHHcC-------CCeEEEecccccCCCcC-------CCCCCcceeeeEEEE
Q psy7414 147 QSELIRMG-------LDNFVVFGDVYRRDQID-------STHFPVFHQADGVHL 186 (320)
Q Consensus 147 q~~~l~~~-------~~~~l~~GdVYRRDeID-------~tHyPvFHQmEG~~v 186 (320)
..++++. +-++.-.|.|||++.=- ---...|.|+|+...
T Consensus 117 -~~l~~~~~~s~~~LPlr~~~~~~~fR~E~~~~g~~~~GL~R~reF~~~e~~~f 169 (297)
T cd00770 117 -AALHRDEILEEEELPLKYAGYSPCFRKEAGSAGRDTRGLFRVHQFEKVEQFVF 169 (297)
T ss_pred -HHHHhcccCCHhhCCchheecChhHhCccccCCCCCCCceEEEeeeeeeEEEE
Confidence 4555432 23888999999977421 112456888888644
No 51
>KOG1885|consensus
Probab=95.17 E-value=0.0049 Score=63.28 Aligned_cols=52 Identities=27% Similarity=0.345 Sum_probs=43.9
Q ss_pred cccccccCchhhHHHHHcCCCeEEEecccccCCCcCCCCCCcceeeeEEEEe
Q psy7414 136 EYLLRAHTTAHQSELIRMGLDNFVVFGDVYRRDQIDSTHFPVFHQADGVHLL 187 (320)
Q Consensus 136 ~~lLRTHTSAhq~~~l~~~~~~~l~~GdVYRRDeID~tHyPvFHQmEG~~v~ 187 (320)
+.-||.-+--+-.+++-.|.+++.=+|++||++-||.||-|+|--+|-...+
T Consensus 274 ~LylRiAPEL~lK~LvVGGldrVYEIGr~FRNEGIDlTHNPEFTTcEfY~AY 325 (560)
T KOG1885|consen 274 DLYLRIAPELYLKMLVVGGLDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAY 325 (560)
T ss_pred ceeeeechHHHHHHHHhccHHHHHHHHHHhhhcCcccccCCCcchHHHHHHH
Confidence 4567777666666777778899989999999999999999999999987664
No 52
>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes. seryl tRNA synthetase structure; InterPro: IPR002314 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain includes the glycine, histidine, proline, threonine and serine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3UH0_A 3UGT_C 3UGQ_A 1B76_B 1GGM_B 1ATI_A 1ADY_C 1ADJ_C 2I4O_A 2I4M_B ....
Probab=95.01 E-value=0.12 Score=45.10 Aligned_cols=52 Identities=15% Similarity=0.163 Sum_probs=36.6
Q ss_pred cccccccCchhhHHHHHc-----C---CCeEEEecccccCC---CcCCCCCCcceeeeEEEEe
Q psy7414 136 EYLLRAHTTAHQSELIRM-----G---LDNFVVFGDVYRRD---QIDSTHFPVFHQADGVHLL 187 (320)
Q Consensus 136 ~~lLRTHTSAhq~~~l~~-----~---~~~~l~~GdVYRRD---eID~tHyPvFHQmEG~~v~ 187 (320)
+++||.=+.......+++ . +-++.-+|.|||++ .--...+-.|+|.|+..+.
T Consensus 56 ~~~L~pt~~~~~~~~~~~~~~~~~~~LP~~~~~~g~~fR~E~~~~~gl~R~reF~~~e~~~f~ 118 (173)
T PF00587_consen 56 EYCLRPTSEPGIYSLFKNEIRSSYRDLPLKLYQIGTCFRNEARPTRGLFRLREFTMDEMHIFC 118 (173)
T ss_dssp EEEE-SSSHHHHHHHHHHHEEBHGGGSSEEEEEEEEEEBSSSSSBSTTTS-SEEEEEEEEEEE
T ss_pred cEEeccccccceeeeecceeeeccccCCeEEeecccccccccccccccceeeEeeeeceEEEe
Confidence 478887666666666643 1 23788899999999 4334677889999999985
No 53
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain.
Probab=94.51 E-value=0.15 Score=47.57 Aligned_cols=98 Identities=18% Similarity=0.255 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccccCCCCCCCCCCCCCcccccc----ccccccccCchhhHH
Q psy7414 74 CMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSKNDCYYVN----REYLLRAHTTAHQSE 149 (320)
Q Consensus 74 ~il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~L~~P~DHPsR~~~DTyYin----~~~lLRTHTSAhq~~ 149 (320)
..+++.|.+.|.+ .| |..++. |++...+.|-.-+ .+.. ..+.|-+- +..+||.-.|..-++
T Consensus 6 ~~l~~~l~~~f~~-----~G---y~~v~t--P~le~~~~~~~~~---~~~~--~~~~~~~~d~~g~~l~LRpd~T~~iaR 70 (261)
T cd00773 6 RYIEDTLREVFER-----YG---YEEIDT--PVFEYTELFLRKS---GDEV--SKEMYRFKDKGGRDLALRPDLTAPVAR 70 (261)
T ss_pred HHHHHHHHHHHHH-----cC---CEEeec--cceeeHHHhcccc---cccc--cceEEEEECCCCCEEEeCCCCcHHHHH
Confidence 3456666666653 46 887753 6655554443332 1111 24556653 358999999988888
Q ss_pred HHHcC------CCeEEEecccccCCCcCCCCCCcceeeeEEEE
Q psy7414 150 LIRMG------LDNFVVFGDVYRRDQIDSTHFPVFHQADGVHL 186 (320)
Q Consensus 150 ~l~~~------~~~~l~~GdVYRRDeID~tHyPvFHQmEG~~v 186 (320)
.+.+. +-++..+|+|||.+.....|+-+|+|+..=.+
T Consensus 71 ~~a~~~~~~~~p~k~~y~g~vfR~e~~~~g~~re~~Q~g~Eii 113 (261)
T cd00773 71 AVAENLLSLPLPLKLYYIGPVFRYERPQKGRYREFYQVGVEII 113 (261)
T ss_pred HHHhcCccCCCCeEEEEEcCEEecCCCCCCCccceEEeceeee
Confidence 77532 23899999999999989999999999764444
No 54
>PTZ00401 aspartyl-tRNA synthetase; Provisional
Probab=94.15 E-value=0.13 Score=53.92 Aligned_cols=51 Identities=20% Similarity=0.322 Sum_probs=36.8
Q ss_pred cccccccccccCchhhHH-HH-HcCCCeEEEecccccCCCcC-CCCCCcceeeeEE
Q psy7414 132 YVNREYLLRAHTTAHQSE-LI-RMGLDNFVVFGDVYRRDQID-STHFPVFHQADGV 184 (320)
Q Consensus 132 Yin~~~lLRTHTSAhq~~-~l-~~~~~~~l~~GdVYRRDeID-~tHyPvFHQmEG~ 184 (320)
|.+...-|+ +|+.... ++ ..|.++++-+|.|||.++.+ ..|.|+|.|+|--
T Consensus 256 yf~~~~~L~--qSpql~kq~li~~g~~rVfeI~p~FRaE~s~T~RHl~EFt~Le~E 309 (550)
T PTZ00401 256 YFNRFAYLA--QSPQLYKQMVLQGDVPRVFEVGPVFRSENSNTHRHLTEFVGLDVE 309 (550)
T ss_pred cCCCCeecC--CCHHHHHHHHHhcCCCCEEEEeCeEeCCCCCCCCCccchhhhhhh
Confidence 344454453 4443332 22 34688999999999999998 6999999999993
No 55
>PRK00960 seryl-tRNA synthetase; Provisional
Probab=94.04 E-value=0.78 Score=48.05 Aligned_cols=110 Identities=15% Similarity=0.137 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCceEEecCCCCeec--------ceeccccCCCCCCCCCCCCC---c-cccc-------
Q psy7414 73 LCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVT--------VEENFDSLLVAKDHVSRSKN---D-CYYV------- 133 (320)
Q Consensus 73 l~il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs--------~~~NFD~L~~P~DHPsR~~~---D-TyYi------- 133 (320)
-..|.+.|++++.+......| |+.+.. |.++. -+.+|....+.-.|+.++.. | ..|+
T Consensus 222 Ga~L~~aL~~~i~d~~~~k~G---yeev~~-P~Li~~ell~ksGhl~~F~e~my~V~~~~~d~e~~~~~~~~l~~T~Evp 297 (517)
T PRK00960 222 MTKLFRAFEKLVIEEVLKPLG---FDECLF-PKLIPLEVMYKMRYLEGLPEGMYYVCPPKRDPEYFEEFVDEMMVKKEVP 297 (517)
T ss_pred HHHHHHHHHHHHHHhhHhhcC---CeEEEC-CcccCHHHHhhcCCccCChhhceEeeccccccccccchhhhcccccccc
Confidence 455777788877543222335 877754 55552 24588888887777664322 0 1232
Q ss_pred ---------cccccccccCchhhHHHHHcC-------CCeEEE-ecccccCCCcCCCC----CCcceeeeEEEEe
Q psy7414 134 ---------NREYLLRAHTTAHQSELIRMG-------LDNFVV-FGDVYRRDQIDSTH----FPVFHQADGVHLL 187 (320)
Q Consensus 134 ---------n~~~lLRTHTSAhq~~~l~~~-------~~~~l~-~GdVYRRDeID~tH----yPvFHQmEG~~v~ 187 (320)
+..++||.=+=.+-.-+++.. +-++.- +|.|||++. -++| ...|+|.|++.+-
T Consensus 298 l~~~~~~L~~~~yvLrPa~Cp~~y~~~~~~ils~rdLPLrl~e~sG~cFR~Es-Gs~~GL~RV~eF~kvE~h~f~ 371 (517)
T PRK00960 298 IEKLKEKLRDPGYVLAPAQCEPFYQFFQGETVDVDELPIKFFDRSGWTYRWEG-GGAHGLERVNEFHRIEIVWLG 371 (517)
T ss_pred ccccccccccccccccccCcHHHHHHHhCCcCChhhCCHHHhhccCCceeCCC-CCCCCCcccceeEEEEEEEEe
Confidence 234566654333333444322 125555 899999995 3322 3469999999664
No 56
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=93.79 E-value=0.68 Score=46.92 Aligned_cols=100 Identities=16% Similarity=0.256 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccccCCCCCCCCCCCCCcccccc-ccccccc-cCchhhHHHH
Q psy7414 74 CMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSKNDCYYVN-REYLLRA-HTTAHQSELI 151 (320)
Q Consensus 74 ~il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~L~~P~DHPsR~~~DTyYin-~~~lLRT-HTSAhq~~~l 151 (320)
..+.+.|.+++.+.+.. .| |..+. .|.+-...-+..=+..+ .-..+-|.|. ++++|+. +-.++- .++
T Consensus 173 ~~l~~aL~~~~~~~~~~-~G---~~~v~--~P~lv~~~~~~~~G~~~----~f~~~~y~i~~~~~~L~pTsE~~~~-~~~ 241 (418)
T TIGR00414 173 AKLERALINFMLDLLEK-NG---YQEIY--PPYLVNEESLDGTGQLP----KFEEDIFKLEDTDLYLIPTAEVPLT-NLH 241 (418)
T ss_pred HHHHHHHHHHHHHHHHH-cC---CEEEe--CCccccHHHHhhcCccc----cccccceEecCCCEEEEeCCcHHHH-HHH
Confidence 45778888888765542 35 87764 46654444444444332 2334566663 3445553 333332 222
Q ss_pred Hc-------CCCeEEEecccccCCC---------cCCCCCCcceeeeEEEE
Q psy7414 152 RM-------GLDNFVVFGDVYRRDQ---------IDSTHFPVFHQADGVHL 186 (320)
Q Consensus 152 ~~-------~~~~~l~~GdVYRRDe---------ID~tHyPvFHQmEG~~v 186 (320)
+. -+-++.-.|.|||++. +-+. .+|+|+|+...
T Consensus 242 ~~~i~s~~~LPlr~~~~s~~FR~E~g~~G~~t~GL~Rv--~qF~k~E~~~f 290 (418)
T TIGR00414 242 RNEILEEEELPIKYTAHSPCFRSEAGSYGKDTKGLIRV--HQFNKVELVKF 290 (418)
T ss_pred hCcCCChHhCCeeEEEEcccccCCCCccCCCCCccccc--cceeeeeEEEE
Confidence 22 1338888999999985 2233 46999999544
No 57
>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from prokaryotes and from the mitochondria of eukaryotes.
Probab=93.56 E-value=0.38 Score=45.16 Aligned_cols=103 Identities=16% Similarity=0.142 Sum_probs=57.7
Q ss_pred HHHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccccCCCCCCCCCCCCCcccccc----ccccccc-cCchhh--
Q psy7414 75 MLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSKNDCYYVN----REYLLRA-HTTAHQ-- 147 (320)
Q Consensus 75 il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~L~~P~DHPsR~~~DTyYin----~~~lLRT-HTSAhq-- 147 (320)
.+++.|++++.+.+. ..| |+.+.. |++....-|.. ..|-..-..+.|.+. +++.||. ++.++-
T Consensus 32 ~l~~~i~~~~~~~~~-~~G---~~ei~~--P~l~~~~~~~~----sg~~~~~~~emy~~~d~~~~~l~LrPt~e~~~t~~ 101 (255)
T cd00779 32 RVLKKIENIIREEMN-KIG---AQEILM--PILQPAELWKE----SGRWDAYGPELLRLKDRHGKEFLLGPTHEEVITDL 101 (255)
T ss_pred HHHHHHHHHHHHHHH-HcC---CEEEEC--CccCCHHHHHh----cCCccccCcccEEEecCCCCeEEEecCCcHHHHHH
Confidence 466777777655442 235 766653 55544333322 134334444566663 3567774 332222
Q ss_pred -HHHHHc--C-CCeEEEecccccCCCcCCC---CCCcceeeeEEEEe
Q psy7414 148 -SELIRM--G-LDNFVVFGDVYRRDQIDST---HFPVFHQADGVHLL 187 (320)
Q Consensus 148 -~~~l~~--~-~~~~l~~GdVYRRDeID~t---HyPvFHQmEG~~v~ 187 (320)
.+.+.+ . +-++...|.|||++.=+.. =+-+|||.|+..+.
T Consensus 102 ~~~~i~s~~~LPlr~~~~~~~FR~E~~~~~Gl~R~reF~q~e~~~~~ 148 (255)
T cd00779 102 VANEIKSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFLMKDAYSFD 148 (255)
T ss_pred HHhccccHhhCCHHHHhCcceecCCCCCCCceeeeeeEeHhhheecc
Confidence 111211 1 2378889999999943543 46789999998874
No 58
>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=93.42 E-value=0.041 Score=56.98 Aligned_cols=55 Identities=24% Similarity=0.359 Sum_probs=48.1
Q ss_pred ccccccccccCchhhHHHHHcCCCeEEEecccccCCCcCCCCCCcceeeeEEEEe
Q psy7414 133 VNREYLLRAHTTAHQSELIRMGLDNFVVFGDVYRRDQIDSTHFPVFHQADGVHLL 187 (320)
Q Consensus 133 in~~~lLRTHTSAhq~~~l~~~~~~~l~~GdVYRRDeID~tHyPvFHQmEG~~v~ 187 (320)
++-+.-||--+--+-.+++-.|.++++=+|++||++-||.||-|+|-.||-...+
T Consensus 226 ld~dlyLRIApELyLKRliVGG~erVfEIgr~FRNEGid~tHNPEFTmlE~Y~AY 280 (502)
T COG1190 226 LDMDLYLRIAPELYLKRLIVGGFERVFEIGRNFRNEGIDTTHNPEFTMLEFYQAY 280 (502)
T ss_pred cCCceEEeeccHHHHHHHHhcCchhheeeccccccCCCccccCcchhhHHHHHHH
Confidence 3446778888878888888889999999999999999999999999999987765
No 59
>PLN02850 aspartate-tRNA ligase
Probab=92.79 E-value=0.28 Score=51.29 Aligned_cols=54 Identities=17% Similarity=0.183 Sum_probs=38.2
Q ss_pred cccccccccccCchhhH--HHHHcCCCeEEEecccccCCCc-CCCCCCcceeeeEEEEe
Q psy7414 132 YVNREYLLRAHTTAHQS--ELIRMGLDNFVVFGDVYRRDQI-DSTHFPVFHQADGVHLL 187 (320)
Q Consensus 132 Yin~~~lLRTHTSAhq~--~~l~~~~~~~l~~GdVYRRDeI-D~tHyPvFHQmEG~~v~ 187 (320)
|.++...|+ +|.-.. .++..|.++++-+|.|||.+.. +..|.|+|.|+|.-.-+
T Consensus 268 yf~~~~~L~--qSpql~kq~li~~g~~rVfeIgp~FRaE~s~t~RHl~EFt~Le~Em~~ 324 (530)
T PLN02850 268 YKGQPACLA--QSPQLHKQMAICGDFRRVFEIGPVFRAEDSFTHRHLCEFTGLDLEMEI 324 (530)
T ss_pred cCCcceecC--CCHHHHHHHHHHhcCCceEEEecccccCCCCCCccchhhccchhhhhh
Confidence 334444453 344332 3345678999999999999995 77999999999987443
No 60
>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=92.58 E-value=5.5 Score=37.75 Aligned_cols=52 Identities=15% Similarity=0.229 Sum_probs=32.4
Q ss_pred ccccccccCchhhHHHHHc------C-CCeEEEecccccCCCcCCC---CCCcceeeeEEEE
Q psy7414 135 REYLLRAHTTAHQSELIRM------G-LDNFVVFGDVYRRDQIDST---HFPVFHQADGVHL 186 (320)
Q Consensus 135 ~~~lLRTHTSAhq~~~l~~------~-~~~~l~~GdVYRRDeID~t---HyPvFHQmEG~~v 186 (320)
+++.||.=..+....++++ . +-++.-.|.|||++.=+.. =.-+|+|.|+..+
T Consensus 92 ~~l~LrPt~e~~~~~~~~~~i~s~~~LPlrl~~~~~~fR~E~r~~~Gl~R~reF~~~e~~~~ 153 (264)
T cd00772 92 EDFALRPTLEENIGEIAAKFIKSWKDLPQHLNQIGNKFRDEIRPRFGFLRAREFIMKDGHSA 153 (264)
T ss_pred ceEEECCCCCHHHHHHHHhhhhhhhccCeeEEEEeCeEeCcCCCCCCcceeeEEEEeeeEEe
Confidence 3456664333333344432 1 2378889999999964632 2568999999766
No 61
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=91.94 E-value=1.3 Score=44.93 Aligned_cols=104 Identities=15% Similarity=0.284 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccccCCCCCCCCCCCCCcccccc-cccccc-ccCchhhHHH
Q psy7414 73 LCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSKNDCYYVN-REYLLR-AHTTAHQSEL 150 (320)
Q Consensus 73 l~il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~L~~P~DHPsR~~~DTyYin-~~~lLR-THTSAhq~~~ 150 (320)
...+.+.|.+++.+......| |..+. .|.+-....+. --.|=.+-..+.|.|. +++.|+ ||--++ ..+
T Consensus 169 ga~L~~aL~~~~~~~~~~~~G---~~ev~--~P~lv~~~~~~----~~G~~~~f~~~ly~i~~~~~~L~pTsE~~l-~~l 238 (425)
T PRK05431 169 GARLERALIQFMLDLHTEEHG---YTEVI--PPYLVNEESMY----GTGQLPKFEEDLYKIEDDDLYLIPTAEVPL-TNL 238 (425)
T ss_pred HHHHHHHHHHHHHHHHHHhcC---CEEEe--ccccccHHHHh----hcCccccchhhceEecCCCEEEEeCCcHHH-HHH
Confidence 456788888888665442345 76663 34443322222 1244445555666663 344454 444444 444
Q ss_pred HHcC-------CCeEEEecccccCCCcCC---C----CCCcceeeeEEEE
Q psy7414 151 IRMG-------LDNFVVFGDVYRRDQIDS---T----HFPVFHQADGVHL 186 (320)
Q Consensus 151 l~~~-------~~~~l~~GdVYRRDeID~---t----HyPvFHQmEG~~v 186 (320)
++.. +-++.-.|.+||++.=-+ + =..+|++.|+...
T Consensus 239 ~~~~~~s~~dLPlr~~~~s~~fR~Eag~~g~~~~GL~Rv~qF~k~E~~~f 288 (425)
T PRK05431 239 HRDEILDEEELPLKYTAYSPCFRSEAGSAGRDTRGLIRVHQFDKVELVKF 288 (425)
T ss_pred HhcccCCHHhCCeeEEEEcCEecCCCCcCCCCCCceeeeeeeeeeeEEEE
Confidence 4322 238888999999885110 0 1346888888855
No 62
>PLN02532 asparagine-tRNA synthetase
Probab=91.04 E-value=0.47 Score=50.80 Aligned_cols=54 Identities=22% Similarity=0.298 Sum_probs=40.3
Q ss_pred ccccccccccCchhhHHHHHcCCCeEEEecccccCCCcC-CCCCCcceeeeEEEEe
Q psy7414 133 VNREYLLRAHTTAHQSELIRMGLDNFVVFGDVYRRDQID-STHFPVFHQADGVHLL 187 (320)
Q Consensus 133 in~~~lLRTHTSAhq~~~l~~~~~~~l~~GdVYRRDeID-~tHyPvFHQmEG~~v~ 187 (320)
.+++.-|+ ..+--..+.+..+.++++.+|.+||.+..| ++|.|+|.++|.-..|
T Consensus 368 Fg~~ayLt-qS~QLylE~~~~gl~rVYeIgP~FRAE~s~T~RHL~EFtmlE~Emaf 422 (633)
T PLN02532 368 FSRPTYLT-VSGRLHLESYACALGNVYTFGPRFRADRIDSARHLAEMWMVEVEMAF 422 (633)
T ss_pred CCCCeeec-cCHHHHHHHHHHhcCceEEEccceecCCCCCCcccccccceeeeehh
Confidence 34444442 222223355556789999999999999999 7999999999998776
No 63
>PLN02678 seryl-tRNA synthetase
Probab=90.93 E-value=2.3 Score=43.82 Aligned_cols=104 Identities=15% Similarity=0.344 Sum_probs=63.3
Q ss_pred hHHHHHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccccCCCCCCCCCCCCCcccccc----cccccccc----C
Q psy7414 72 PLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSKNDCYYVN----REYLLRAH----T 143 (320)
Q Consensus 72 Pl~il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~L~~P~DHPsR~~~DTyYin----~~~lLRTH----T 143 (320)
....|...|.+++...... .| |+.+. +|.+-...=+..=| |+..-..|-|-|. ..+++.|. +
T Consensus 172 ~ga~L~~AL~~y~ld~~~~-~G---y~~V~--~P~lv~~~~~~~sG----~~~~f~e~my~i~~~~~~~yLi~TaE~~l~ 241 (448)
T PLN02678 172 AGVLLNQALINFGLAFLRK-RG---YTPLQ--TPFFMRKDVMAKCA----QLAQFDEELYKVTGEGDDKYLIATSEQPLC 241 (448)
T ss_pred HHHHHHHHHHHHHHHHHHH-cC---CEEEE--CcccccHHHHhhcC----CcccchhcCceecCCCCceeeecccccccC
Confidence 4578888899887664432 35 87774 35543333333333 4444456778773 34678863 3
Q ss_pred chhhHHHH--HcCCCeEEEecccccCCCcCCCC---------CCcceeeeEEEEe
Q psy7414 144 TAHQSELI--RMGLDNFVVFGDVYRRDQIDSTH---------FPVFHQADGVHLL 187 (320)
Q Consensus 144 SAhq~~~l--~~~~~~~l~~GdVYRRDeID~tH---------yPvFHQmEG~~v~ 187 (320)
..|.-+.+ +.-+-++...+.+||++. .+| ...|+|+|.+++-
T Consensus 242 ~~h~~~~~s~~eLPlr~~~~s~cfR~Ea--gs~G~~~~GL~RvhqF~KvE~f~~~ 294 (448)
T PLN02678 242 AYHRGDWIDPKELPIRYAGYSTCFRKEA--GSHGRDTLGIFRVHQFEKVEQFCIT 294 (448)
T ss_pred hHHhcccCCHHhCCceeEEecccccccc--ccCCCcCCcceEEEEEEEEEEEEEE
Confidence 33432222 122448999999999997 222 3579999997774
No 64
>PLN02221 asparaginyl-tRNA synthetase
Probab=90.61 E-value=0.64 Score=49.21 Aligned_cols=39 Identities=21% Similarity=0.345 Sum_probs=34.7
Q ss_pred HHHHcCCCeEEEecccccCCCc-CCCCCCcceeeeEEEEe
Q psy7414 149 ELIRMGLDNFVVFGDVYRRDQI-DSTHFPVFHQADGVHLL 187 (320)
Q Consensus 149 ~~l~~~~~~~l~~GdVYRRDeI-D~tHyPvFHQmEG~~v~ 187 (320)
+++..+..+++.+|.|||.+.. |++|.|+|.++|.-..|
T Consensus 320 e~~~~~l~rVfeIgP~FRAE~s~T~RHL~EFtmlE~Emaf 359 (572)
T PLN02221 320 ETYACALSSVYTFGPTFRAENSHTSRHLAEFWMVEPEIAF 359 (572)
T ss_pred HHHHHhcCCeEEEccceecCCCCCCcccccccceeeeeec
Confidence 5555678899999999999998 79999999999998876
No 65
>PTZ00425 asparagine-tRNA ligase; Provisional
Probab=88.27 E-value=1.2 Score=47.30 Aligned_cols=39 Identities=18% Similarity=0.335 Sum_probs=34.2
Q ss_pred HHHHcCCCeEEEecccccCCCcC-CCCCCcceeeeEEEEe
Q psy7414 149 ELIRMGLDNFVVFGDVYRRDQID-STHFPVFHQADGVHLL 187 (320)
Q Consensus 149 ~~l~~~~~~~l~~GdVYRRDeID-~tHyPvFHQmEG~~v~ 187 (320)
+.+..+.++++.+|.+||.+..| ..|.|+|.|+|.=..|
T Consensus 337 E~~~~g~~rVf~i~p~FRaE~s~t~RHL~EFt~lE~E~af 376 (586)
T PTZ00425 337 ENLCSSMGDVYTFGPTFRAENSHTSRHLAEFWMIEPEIAF 376 (586)
T ss_pred HHHHhccCCEEEEeceEeCCCCCCCCCCcccceEEEEEec
Confidence 45556789999999999999986 7999999999998876
No 66
>COG0072 PheT Phenylalanyl-tRNA synthetase beta subunit [Translation, ribosomal structure and biogenesis]
Probab=85.25 E-value=4.5 Score=43.37 Aligned_cols=188 Identities=21% Similarity=0.219 Sum_probs=109.3
Q ss_pred CCCCCChhhhccCCCCCCCCCCChHHHHHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccccCCCCCCCCCCCCC
Q psy7414 49 DYTNVTPKILSYLNKNLHNKKYHPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSKN 128 (320)
Q Consensus 49 ~~tNvt~~Ils~~gr~l~~~~~HPl~il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~L~~P~DHPsR~~~ 128 (320)
.|.|+++.........- +..++....++.+++.+.. .| |..+-. -..++...+++..+...+
T Consensus 331 Gy~ni~~~~p~~~~~~~--~~~~~~~~~~r~vr~~l~~-----~G---~~Evit-ysl~s~e~~~~~~~~~~~------- 392 (650)
T COG0072 331 GYNNIPPELPSAFTIGR--GGLTPLQKFRRKVRRALVG-----LG---FQEVIT-YSLTSPEEAKLFGLENDE------- 392 (650)
T ss_pred CcccCCCcCCccccccc--CCCChHHHHHHHHHHHHHh-----CC---cceEee-eccCCHHHHHHhccCCCc-------
Confidence 56677777654321111 1478999999999999864 25 554333 245677777777666655
Q ss_pred ccccc-c----ccccccccCchhhHHHHHc-----CC-CeEEEecccccCCCcCCCCCCcceeeeEEEEeeccccccCcc
Q psy7414 129 DCYYV-N----REYLLRAHTTAHQSELIRM-----GL-DNFVVFGDVYRRDQIDSTHFPVFHQADGVHLLNRDQVSRGDI 197 (320)
Q Consensus 129 DTyYi-n----~~~lLRTHTSAhq~~~l~~-----~~-~~~l~~GdVYRRDeID~tHyPvFHQmEG~~v~~~~~l~~~~~ 197 (320)
..-| | ...+|||=-=.+-.+.++. .+ -++|=+|+||-.|+-. +.|...+.
T Consensus 393 -~~~l~NPiS~e~s~mR~sLlp~LL~~~~~N~~r~~~~~~iFEiG~v~~~~~~~--------~~~~~~~~---------- 453 (650)
T COG0072 393 -ALELANPISEEYSVLRTSLLPGLLEALSYNKNRKNPDVRIFEIGDVFVKDEEA--------ERETRHLA---------- 453 (650)
T ss_pred -ceEecCCcchhHHHHHHHHHHHHHHHHHHhhccCCCCeeEEEeeeeEecCCcc--------cchhHHHH----------
Confidence 1112 1 1245665444444454432 23 3788899999999743 11211110
Q ss_pred CcccccceecccCCCchhhhhhhhccccccccCcceeeeecCCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHhCCC
Q psy7414 198 GVGTSLKIMTIFTPTSQEYFYIKKCNKISESIGQNIVIFEQGGVHTDEKQARHTLDATKVMEQKLKNSLVKLAKILFGDD 277 (320)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~q~~h~~~~~~~v~~~LK~tLe~lv~~lFg~~ 277 (320)
.+...+...+. ++.+ ...-..++|+.|+.++..+ |
T Consensus 454 --------------------~l~~g~~~~~~--------------w~~~--------~~v~f~d~Kg~ve~ll~~l-g-- 488 (650)
T COG0072 454 --------------------GLAAGLAGEES--------------WQGK--------RPVDFYDAKGDLEALLEAL-G-- 488 (650)
T ss_pred --------------------HHhhccccccc--------------cccC--------CCcCHHHHHHHHHHHHHHh-C--
Confidence 00000000000 0000 0111478999999999987 4
Q ss_pred ccEEEeccCCCCCCCceEEEeeeCCceEEEeecccccccccCC
Q psy7414 278 IQMRWISEYFPFTHPSWELEILLNDKWVEILGCGVIRHEILDR 320 (320)
Q Consensus 278 ~~~Rw~~ayFPFTePS~EleV~~~g~WLEvLGCGvv~~~vL~~ 320 (320)
+.+.+.+.=.|+=+|.---.|+.++ -.|+--|.+||+|+++
T Consensus 489 ~~~~~~~~~~~~~hpgrsA~I~~~~--~~iG~iGeiHP~vl~~ 529 (650)
T COG0072 489 VEYEFEPAEHPAFHPGRSAAIYLNK--EVIGFIGELHPEVLKE 529 (650)
T ss_pred CceEEEEccCCCccCCceEEEEECC--EEEEEEeeeCHHHHHh
Confidence 5666666667788888888888873 4455689999999864
No 67
>cd00769 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. While the alpha chain contains a catalytic core domain, the beta chain has a non-catalytic core domain.
Probab=85.16 E-value=1.7 Score=39.01 Aligned_cols=56 Identities=25% Similarity=0.238 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHhCCCccEEEec--cCCCCCCCceEEEeeeCCceEEEeecccccccccC
Q psy7414 259 EQKLKNSLVKLAKILFGDDIQMRWIS--EYFPFTHPSWELEILLNDKWVEILGCGVIRHEILD 319 (320)
Q Consensus 259 ~~~LK~tLe~lv~~lFg~~~~~Rw~~--ayFPFTePS~EleV~~~g~WLEvLGCGvv~~~vL~ 319 (320)
..++|+.++.++..+ | +...|.+ +-.|+=+|.-..+|+.+|+ +|+=.|.+||+|++
T Consensus 123 f~~~Kg~ve~ll~~l-~--~~~~~~~~~~~~~~~hpg~~a~I~~~g~--~vG~~G~lhP~v~~ 180 (198)
T cd00769 123 FYDAKGILEALLRAL-G--IIVEFELEELDADLFHPGRSAKIYVNGE--VIGFIGELHPEVLK 180 (198)
T ss_pred HhhHHHHHHHHHHHc-C--CeEEEEecCCCCCccCCCceEEEEECCE--EEEEEEeeCHHHHH
Confidence 368999999999865 4 2344544 6667559999999999884 46668999999875
No 68
>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain. ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=85.05 E-value=4.1 Score=39.07 Aligned_cols=105 Identities=17% Similarity=0.293 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccccCCCCCCCCCCCCCccccccc---cccccccCchhh-HH
Q psy7414 74 CMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSKNDCYYVNR---EYLLRAHTTAHQ-SE 149 (320)
Q Consensus 74 ~il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~L~~P~DHPsR~~~DTyYin~---~~lLRTHTSAhq-~~ 149 (320)
..+++.|++++.+.+. ..| |+.+.. |++- +.|.+.- ..|-..-..+.|.++. .++||. |+... .+
T Consensus 30 ~~l~~~l~~~~~~~~~-~~G---y~ev~t--P~l~---~~~l~~~-sg~~~~~~~~my~~~~~~~~l~LRP-~~~~~~~~ 98 (298)
T cd00771 30 AIIRNELEDFLRELQR-KRG---YQEVET--PIIY---NKELWET-SGHWDHYRENMFPFEEEDEEYGLKP-MNCPGHCL 98 (298)
T ss_pred HHHHHHHHHHHHHHHH-HcC---CEEEEC--Ceec---CHHHHhh-CCCccccccCceEeccCCceEEEcc-cCCHHHHH
Confidence 4567777777765443 335 766543 4443 3333333 3565555566777754 579999 55544 45
Q ss_pred HHHcC-------CCeEEEecccccCCCcCCCC----CCcceeeeEEEEeec
Q psy7414 150 LIRMG-------LDNFVVFGDVYRRDQIDSTH----FPVFHQADGVHLLNR 189 (320)
Q Consensus 150 ~l~~~-------~~~~l~~GdVYRRDeID~tH----yPvFHQmEG~~v~~~ 189 (320)
++.+. +-++...|.|||++.=-.+| +-+|+|.|+-.+.+.
T Consensus 99 ~~~~~~~s~~~LPlr~~~~g~vfR~E~~~~~~Gl~R~reF~q~e~~i~~~~ 149 (298)
T cd00771 99 IFKSKPRSYRDLPLRLAEFGTVHRYEQSGALHGLTRVRGFTQDDAHIFCTP 149 (298)
T ss_pred HHHhhccchhhCCeEEEEecCcccCCCCCCCCCccccccEEECCEEEEeCC
Confidence 55431 23888999999999642222 357999999988543
No 69
>cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from archaea, the cytoplasm of eukaryotes and some bacteria.
Probab=84.83 E-value=8.9 Score=36.12 Aligned_cols=54 Identities=7% Similarity=0.022 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCccEEEec----cCCCCCCCceEEEeee-CCceEEEeec
Q psy7414 255 TKVMEQKLKNSLVKLAKILFGDDIQMRWIS----EYFPFTHPSWELEILL-NDKWVEILGC 310 (320)
Q Consensus 255 ~~~v~~~LK~tLe~lv~~lFg~~~~~Rw~~----ayFPFTePS~EleV~~-~g~WLEvLGC 310 (320)
+......+....+.++..++|- .+|... .-|.=..-.|.+|++. .|+|+||.-|
T Consensus 160 ~~~~~~~~~~~~~~i~~~llgl--~~~~~~~~~~d~~~~a~~~~~ie~~~p~~~~~ev~s~ 218 (261)
T cd00778 160 AEEEVLQILDLYKEFYEDLLAI--PVVKGRKTEWEKFAGADYTYTIEAMMPDGRALQSGTS 218 (261)
T ss_pred HHHHHHHHHHHHHHHHHHhCCC--eEEEecCCccccCCCCccceEEEEEeeCCCEEEEEec
Confidence 3334455666677777776563 344432 1122223346667765 4789998765
No 70
>PRK04173 glycyl-tRNA synthetase; Provisional
Probab=83.53 E-value=3.3 Score=42.45 Aligned_cols=47 Identities=19% Similarity=0.340 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhCCC-ccEEEec----cCCCCCCCceEEEeeeCC--ceEEEeecc
Q psy7414 264 NSLVKLAKILFGDD-IQMRWIS----EYFPFTHPSWELEILLND--KWVEILGCG 311 (320)
Q Consensus 264 ~tLe~lv~~lFg~~-~~~Rw~~----ayFPFTePS~EleV~~~g--~WLEvLGCG 311 (320)
..+..++.. ||-+ .++|+.. ..+.++.-.||+++.... +|.|+.||+
T Consensus 235 ~~~~~~l~~-lG~~~~~~~~s~~~~~e~~~ys~~~wd~e~~~~~g~~~~e~~g~~ 288 (456)
T PRK04173 235 ELRKNWLLD-LGIDPENLRFREHLPEELAHYSKATWDIEYKFPFGRFWGELEGIA 288 (456)
T ss_pred HHHHHHHHH-cCCCccceEEEecCcchhhccHHHHHhHHHhCCCCCcEEEEeeee
Confidence 333444444 5643 3466643 378999999999987653 499987755
No 71
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit. Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit.
Probab=82.49 E-value=3.3 Score=39.84 Aligned_cols=98 Identities=15% Similarity=0.196 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccccCCCCCCCCCCCCCccccc----cccccccccCchhhHH
Q psy7414 74 CMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSKNDCYYV----NREYLLRAHTTAHQSE 149 (320)
Q Consensus 74 ~il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~L~~P~DHPsR~~~DTyYi----n~~~lLRTHTSAhq~~ 149 (320)
..+++.|.+.|.+ .| |..++ +|++...+-|-.. .|..+ ...|.+ ++..+||.=-|+.-++
T Consensus 12 ~~i~~~l~~~~~~-----~G---y~~i~--tP~le~~~~~~~~----~~~~~--~~~~~~~d~~g~~l~LRpD~T~~iaR 75 (314)
T TIGR00443 12 EEIERQLQDVFRS-----WG---YQEII--TPTLEYLDTLSAG----GGILN--EDLFKLFDSLGRVLGLRPDMTTPIAR 75 (314)
T ss_pred HHHHHHHHHHHHH-----cC---Ceecc--CcchhhHHHhccc----CCcch--hceEEEECCCCCEEeecCcCcHHHHH
Confidence 3455555555543 35 77775 3666555544332 23222 345655 2457999976666667
Q ss_pred HHHc---C---CCeEEEecccccCCCcCCCCCCcceeeeEEEEe
Q psy7414 150 LIRM---G---LDNFVVFGDVYRRDQIDSTHFPVFHQADGVHLL 187 (320)
Q Consensus 150 ~l~~---~---~~~~l~~GdVYRRDeID~tHyPvFHQmEG~~v~ 187 (320)
.+.+ + +-|+..+|.|||.+..-..++-+|+|+..=.+.
T Consensus 76 ~~~~~~~~~~~p~r~~y~g~VfR~~~~~~gr~re~~Q~g~Eiig 119 (314)
T TIGR00443 76 AVSTRLRDRPLPLRLCYAGNVFRTNESGAGRSREFTQAGVELIG 119 (314)
T ss_pred HHHHhcccCCCCeEEEEeceEeecCCCcCCCcccccccceEEeC
Confidence 6543 1 248999999999999888899999998655443
No 72
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=81.67 E-value=4.7 Score=40.29 Aligned_cols=97 Identities=20% Similarity=0.239 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccccCCCCCCCCCCCCCcccccc----ccccccccCchhhH
Q psy7414 73 LCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSKNDCYYVN----REYLLRAHTTAHQS 148 (320)
Q Consensus 73 l~il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~L~~P~DHPsR~~~DTyYin----~~~lLRTHTSAhq~ 148 (320)
+..+.+.|++.|.+ +| |..+. .|++...+.|-... ..+ .+ ...|-+. +...||.=-|+--+
T Consensus 7 ~~~i~~~i~~~f~~-----~G---y~~I~--tP~lE~~e~~~~~~-g~~--~~--~~~~~f~D~~G~~l~LRpD~T~pia 71 (373)
T PRK12295 7 SAAAAEALLASFEA-----AG---AVRVD--PPILQPAEPFLDLS-GED--IR--RRIFVTSDENGEELCLRPDFTIPVC 71 (373)
T ss_pred HHHHHHHHHHHHHH-----cC---CEEee--CCccccHHHhhhcc-Cch--hh--cceEEEECCCCCEEeeCCCCcHHHH
Confidence 34566777777854 46 87775 46665555553211 111 11 2345442 35799998888777
Q ss_pred HHHHc-C---CCeEEEecccccCCCcCCCCCCcceeeeEEEEe
Q psy7414 149 ELIRM-G---LDNFVVFGDVYRRDQIDSTHFPVFHQADGVHLL 187 (320)
Q Consensus 149 ~~l~~-~---~~~~l~~GdVYRRDeID~tHyPvFHQmEG~~v~ 187 (320)
|.+.+ . +.++.++|.|||.+ .-.+-+|+|+..=.+.
T Consensus 72 R~~~~~~~~~p~R~~Y~g~VfR~~---~gr~rEf~Q~GvEiiG 111 (373)
T PRK12295 72 RRHIATAGGEPARYAYLGEVFRQR---RDRASEFLQAGIESFG 111 (373)
T ss_pred HHHHHcCCCCCeEEEEEccEEECC---CCCCCcceEeeEEeeC
Confidence 76533 2 23899999999988 5678999998554443
No 73
>PLN02972 Histidyl-tRNA synthetase
Probab=81.23 E-value=4.4 Score=44.47 Aligned_cols=96 Identities=23% Similarity=0.219 Sum_probs=62.9
Q ss_pred HHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccccCCCCCCCCCCCCCcccccc----ccccccccCchhhHHHH
Q psy7414 76 LKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSKNDCYYVN----REYLLRAHTTAHQSELI 151 (320)
Q Consensus 76 l~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~L~~P~DHPsR~~~DTyYin----~~~lLRTHTSAhq~~~l 151 (320)
+.+.|++.|. ++| |..++. |+....+.|-. ...++ + ...|-+. +...||.=-|+--+|++
T Consensus 347 I~~~L~~vFk-----~hG---y~eI~T--PvfE~~Ell~~-k~Ged--~---k~mY~f~D~gGr~LaLRPDlTvPiAR~v 410 (763)
T PLN02972 347 AFSIITSVFK-----RHG---ATALDT--PVFELRETLMG-KYGED--S---KLIYDLADQGGELCSLRYDLTVPFARYV 410 (763)
T ss_pred HHHHHHHHHH-----HcC---CEEccC--CcccchHHhhc-ccCcc--h---hheEEEECCCCCEEEeCCCChHHHHHHH
Confidence 4444555553 346 777754 66655555533 12222 1 2344442 24789999998888988
Q ss_pred HcC---CCeEEEecccccCCCcCCCCCCcceeeeEEEEe
Q psy7414 152 RMG---LDNFVVFGDVYRRDQIDSTHFPVFHQADGVHLL 187 (320)
Q Consensus 152 ~~~---~~~~l~~GdVYRRDeID~tHyPvFHQmEG~~v~ 187 (320)
..+ ..+++.+|+|||+|.--.-+|-+|||+..=.+.
T Consensus 411 A~n~~~p~KrYyiG~VFR~e~pqkGR~REF~Q~G~EIIG 449 (763)
T PLN02972 411 AMNGITSFKRYQIAKVYRRDNPSKGRYREFYQCDFDIAG 449 (763)
T ss_pred HhCCCCcceEEEeccEEecCCCCCCCCccceEEeEEEEc
Confidence 653 247889999999999878889999999665554
No 74
>PLN02320 seryl-tRNA synthetase
Probab=81.19 E-value=28 Score=36.66 Aligned_cols=33 Identities=15% Similarity=0.277 Sum_probs=22.0
Q ss_pred CCeEEEecccccCCCc--C-CC----CCCcceeeeEEEEe
Q psy7414 155 LDNFVVFGDVYRRDQI--D-ST----HFPVFHQADGVHLL 187 (320)
Q Consensus 155 ~~~~l~~GdVYRRDeI--D-~t----HyPvFHQmEG~~v~ 187 (320)
+-++...|.|||++.= . .+ =...|+|.|.+.+-
T Consensus 313 PlRy~~~s~cFR~EAgs~G~d~rGL~RvhQF~KvE~~if~ 352 (502)
T PLN02320 313 PLKYVAFSHCFRTEAGAAGAATRGLYRVHQFSKVEMFVIC 352 (502)
T ss_pred CceeEEeccccccccccCCCcCCCceeeeeeecccEEEEE
Confidence 4589999999999853 1 01 12467777777663
No 75
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=80.08 E-value=3.4 Score=41.09 Aligned_cols=99 Identities=17% Similarity=0.265 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccccCCCCCCCCCCCCCcccccc-----ccccccccCchhhH
Q psy7414 74 CMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSKNDCYYVN-----REYLLRAHTTAHQS 148 (320)
Q Consensus 74 ~il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~L~~P~DHPsR~~~DTyYin-----~~~lLRTHTSAhq~ 148 (320)
..+++.|.+.|.+ +| |..++. |++.-.+.| .--..+..++ ..|-+- +...||.=-|+--+
T Consensus 21 ~~i~~~l~~~f~~-----~G---y~~i~t--P~lE~~e~~---~~~~g~~~~~--~~~~f~d~~~g~~l~LRpD~T~~ia 85 (391)
T PRK12292 21 EEIRRRLLDLFRR-----WG---YEEVIT--PTLEYLDTL---LAGGGAILDL--RTFKLVDQLSGRTLGLRPDMTAQIA 85 (391)
T ss_pred HHHHHHHHHHHHH-----cC---CceeeC--cchhhHHHH---hccCCccchh--hhEEEeecCCCCEEEECCCCcHHHH
Confidence 3455566666643 45 666643 554433333 2112233332 244442 24689999999888
Q ss_pred HHHHcC------CCeEEEecccccCCCcCCCCCCcceeeeEEEEee
Q psy7414 149 ELIRMG------LDNFVVFGDVYRRDQIDSTHFPVFHQADGVHLLN 188 (320)
Q Consensus 149 ~~l~~~------~~~~l~~GdVYRRDeID~tHyPvFHQmEG~~v~~ 188 (320)
|.+.+. +-|+..+|.|||.+..-.-++-+|||+. +-++.
T Consensus 86 R~~a~~~~~~~~p~r~~y~g~vfR~~~~~~gr~ref~Q~g-~EiiG 130 (391)
T PRK12292 86 RIAATRLANRPGPLRLCYAGNVFRAQERGLGRSREFLQSG-VELIG 130 (391)
T ss_pred HHHHHhccCCCCCeEEEeeceeeecCCCcCCCccchhccc-eEEeC
Confidence 887542 2389999999999998888999999996 44443
No 76
>PRK12420 histidyl-tRNA synthetase; Provisional
Probab=79.16 E-value=6.9 Score=39.26 Aligned_cols=102 Identities=20% Similarity=0.226 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccccCCCCCCCCCCCCCcccccc----ccccccccCchhhH
Q psy7414 73 LCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSKNDCYYVN----REYLLRAHTTAHQS 148 (320)
Q Consensus 73 l~il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~L~~P~DHPsR~~~DTyYin----~~~lLRTHTSAhq~ 148 (320)
...+++.|++.|.. +| |..++. |+....+.|-.. ....... ....|-+- ...+||.=-|+--+
T Consensus 21 ~~~i~~~l~~~f~~-----~G---y~~i~t--P~lE~~~~~~~~-~~~~~~~--~~~~~~~~D~~g~~l~LRpD~T~~ia 87 (423)
T PRK12420 21 RNKIKRALEDVFER-----YG---CKPLET--PTLNMYELMSSK-YGGGDEI--LKEIYTLTDQGKRDLALRYDLTIPFA 87 (423)
T ss_pred HHHHHHHHHHHHHH-----cC---CEeccc--cccchHHHHhcc-cCCCccc--ccceEEEecCCCceecccccccHHHH
Confidence 44566666676743 46 777753 555444444221 0111111 12355542 35799998888777
Q ss_pred HHHHcC-----CCeEEEecccccCCCcCCCCCCcceeeeEEEEe
Q psy7414 149 ELIRMG-----LDNFVVFGDVYRRDQIDSTHFPVFHQADGVHLL 187 (320)
Q Consensus 149 ~~l~~~-----~~~~l~~GdVYRRDeID~tHyPvFHQmEG~~v~ 187 (320)
|.+... +-++..+|+|||.+..-.-++-+|+|+..=.+.
T Consensus 88 R~va~~~~~~~p~r~~y~g~vfR~~~~~~gr~rE~~Q~g~EiiG 131 (423)
T PRK12420 88 KVVAMNPNIRLPFKRYEIGKVFRDGPIKQGRFREFIQCDVDIVG 131 (423)
T ss_pred HHHHhCcCCCCCeeEEEEcceECCCCCCCCccceeEECCeeeEC
Confidence 877542 228889999999999888899999998655443
No 77
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=78.99 E-value=6.6 Score=39.69 Aligned_cols=102 Identities=18% Similarity=0.202 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCceEEecCCCCeecceecccc-CCCCCCCCCCCCCccccc----cccccccccCchhh
Q psy7414 73 LCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDS-LLVAKDHVSRSKNDCYYV----NREYLLRAHTTAHQ 147 (320)
Q Consensus 73 l~il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~-L~~P~DHPsR~~~DTyYi----n~~~lLRTHTSAhq 147 (320)
...+.+.|.+.|. .+| |..++. |++--...|.. ++--.|++. .+.|=+ ++...||.=.|+.-
T Consensus 21 ~~~i~~~i~~~~~-----~~G---y~~I~T--P~~E~~e~~~~~~G~~~~~~~---~~my~~~d~~g~~l~LRpd~T~~i 87 (430)
T CHL00201 21 WQFIHDKALTLLS-----LAN---YSEIRT--PIFENSSLYDRGIGETTDIVN---KEMYRFTDRSNRDITLRPEGTAGI 87 (430)
T ss_pred HHHHHHHHHHHHH-----HcC---CeeecC--cccchHHHHhcccCCcccccc---cceEEEEcCCCCEEEeCCCCcHHH
Confidence 3445555555554 245 766653 55544444422 121222221 234433 24579999999999
Q ss_pred HHHHHc----C--CC-eEEEecccccCCCcCCCCCCcceeeeEEEEe
Q psy7414 148 SELIRM----G--LD-NFVVFGDVYRRDQIDSTHFPVFHQADGVHLL 187 (320)
Q Consensus 148 ~~~l~~----~--~~-~~l~~GdVYRRDeID~tHyPvFHQmEG~~v~ 187 (320)
+|.+.+ . .+ ++..+|.|||.+.--+-=+-+|||+..=.+.
T Consensus 88 aR~~~~~~~~~~~~p~R~~y~g~vfR~e~~q~GR~Ref~Q~g~EiiG 134 (430)
T CHL00201 88 VRAFIENKMDYHSNLQRLWYSGPMFRYERPQSGRQRQFHQLGIEFIG 134 (430)
T ss_pred HHHHHHccccccCCCeEEEEEcceecCCCCcCCccceeEEeceEEEC
Confidence 997532 1 23 8999999999998777778899998665554
No 78
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=78.90 E-value=5 Score=38.49 Aligned_cols=89 Identities=12% Similarity=0.203 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccccCCCCCCCCCCCCCcccccc----ccccccccCchhhH
Q psy7414 73 LCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSKNDCYYVN----REYLLRAHTTAHQS 148 (320)
Q Consensus 73 l~il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~L~~P~DHPsR~~~DTyYin----~~~lLRTHTSAhq~ 148 (320)
...+++.|.+.|. .+| |..+.. |.+.-.++| .. . .....|-+. +...||.=-|+--+
T Consensus 22 ~~~i~~~l~~vf~-----~~G---y~~I~t--P~lE~~e~~---~~----~--~~~~~y~~~D~~g~~l~LRpD~T~~ia 82 (281)
T PRK12293 22 KREIENVASEILY-----ENG---FEEIVT--PFFSYHQHQ---SI----A--DEKELIRFSDEKNHQISLRADSTLDVV 82 (281)
T ss_pred HHHHHHHHHHHHH-----HcC---CeEeec--cceeehhhh---cc----c--chhceEEEECCCCCEEEECCcCCHHHH
Confidence 3445555556664 346 776654 554333333 11 1 123455543 24789999999888
Q ss_pred HHHHcC------CCeEEEecccccCCCcCCCCCCcceeeeEEEE
Q psy7414 149 ELIRMG------LDNFVVFGDVYRRDQIDSTHFPVFHQADGVHL 186 (320)
Q Consensus 149 ~~l~~~------~~~~l~~GdVYRRDeID~tHyPvFHQmEG~~v 186 (320)
|.+.+. +-++.++|+|||.+. -+|+|+..=.+
T Consensus 83 R~~a~~~~~~~~p~r~~Y~g~vfR~~~------rEf~Q~GvEli 120 (281)
T PRK12293 83 RIVTKRLGRSTEHKKWFYIQPVFRYPS------NEIYQIGAELI 120 (281)
T ss_pred HHHHHhcccCCCceeEEEeccEEecCC------CcccccCeEee
Confidence 877532 238999999999874 69999855444
No 79
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi. The other family includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae.
Probab=78.28 E-value=15 Score=37.84 Aligned_cols=100 Identities=13% Similarity=0.172 Sum_probs=51.6
Q ss_pred HHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccccCCCCCCCCCCCCCcccccc--------ccccccccCchhh
Q psy7414 76 LKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSKNDCYYVN--------REYLLRAHTTAHQ 147 (320)
Q Consensus 76 l~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~L~~P~DHPsR~~~DTyYin--------~~~lLRTHTSAhq 147 (320)
+++.|++++.+.+. ..| |..+.. |.+-. -+.|.-=..|..-=..+.|.+. +.+.||.=.....
T Consensus 40 i~~~I~~~i~~~~~-~~G---~~ev~~--P~l~~---~~~~~~~~~h~~~f~~e~f~v~~~g~~~~~e~l~LrPt~e~~i 110 (472)
T TIGR00408 40 IWKNIQKILRNILD-EIG---HEEVYF--PMLIP---ESELAKEKDHIKGFEPEVYWITHGGLSKLDEPLALRPTSETAM 110 (472)
T ss_pred HHHHHHHHHHHHHH-HcC---CEEEEC--CccCC---HHHHHhhcchhhhcchhcEEEecCCCCccCCcEEEeCCCcHHH
Confidence 56777776655443 235 665543 33322 1222111334433333556663 3567776433444
Q ss_pred HHHHHcC-------CCeEEEecccccCCCcCC---CCCCcceeeeEE
Q psy7414 148 SELIRMG-------LDNFVVFGDVYRRDQIDS---THFPVFHQADGV 184 (320)
Q Consensus 148 ~~~l~~~-------~~~~l~~GdVYRRDeID~---tHyPvFHQmEG~ 184 (320)
..++++. +-++.-.|.|||.+.-+. .=.-.|.|.||-
T Consensus 111 ~~~~~~~i~S~rdLPlr~~q~~~vfR~E~~~~~gl~R~rEF~~~e~h 157 (472)
T TIGR00408 111 YPMFKKWVKSYTDLPLKINQWVNVFRYETKHTRPFLRTREFTWQEAH 157 (472)
T ss_pred HHHHhccccChhhcCHHHhheeeeecCCCCCCCCcceeeeeehhhhh
Confidence 4444321 227778999999998551 123456777764
No 80
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=77.14 E-value=38 Score=36.02 Aligned_cols=103 Identities=14% Similarity=0.254 Sum_probs=62.4
Q ss_pred HHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccccCCCCCCCCCCCCCcccccc---ccccccccCchhhHHHHH
Q psy7414 76 LKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSKNDCYYVN---REYLLRAHTTAHQSELIR 152 (320)
Q Consensus 76 l~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~L~~P~DHPsR~~~DTyYin---~~~lLRTHTSAhq~~~l~ 152 (320)
+++.|++++.+.+. ..| |+.+.. |+.....-|..=+ -.||.+ .+-|.++ +.+.||.=..+...+.++
T Consensus 276 ~~~~i~~~~~~~~~-~~G---~~~v~t--P~l~~~~l~~~sG-~~~~~~---~emy~~d~~~~~~~LrP~~~~~~~~~~~ 345 (639)
T PRK12444 276 IRNELEAFLREIQK-EYN---YQEVRT--PFMMNQELWERSG-HWDHYK---DNMYFSEVDNKSFALKPMNCPGHMLMFK 345 (639)
T ss_pred HHHHHHHHHHHHHH-HcC---CEEEEC--CccCCHHHHhhcC-Chhhhh---hhcCeecCCCcEEEEccCCCHHHHHHHh
Confidence 56667777765543 235 777754 6654444443322 122222 2344442 346788877777777775
Q ss_pred cC-------CCeEEEecccccCCCcCCCC----CCcceeeeEEEEee
Q psy7414 153 MG-------LDNFVVFGDVYRRDQIDSTH----FPVFHQADGVHLLN 188 (320)
Q Consensus 153 ~~-------~~~~l~~GdVYRRDeID~tH----yPvFHQmEG~~v~~ 188 (320)
+. +-++.-.|.|||++.--++| +-.|||.|+-...+
T Consensus 346 ~~~~sy~~LP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~d~~~f~~ 392 (639)
T PRK12444 346 NKLHSYRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAHLFVT 392 (639)
T ss_pred CcccChhhCCceeEEeccccCCCCCcCCcCcceeeeeEEccEEEECC
Confidence 43 23888999999999754322 46799999995533
No 81
>PLN02530 histidine-tRNA ligase
Probab=76.60 E-value=6.2 Score=40.62 Aligned_cols=102 Identities=18% Similarity=0.194 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccccCCCCCCCCCCCCCccccc----cccccccccCchhhHH
Q psy7414 74 CMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSKNDCYYV----NREYLLRAHTTAHQSE 149 (320)
Q Consensus 74 ~il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~L~~P~DHPsR~~~DTyYi----n~~~lLRTHTSAhq~~ 149 (320)
..+++.|++.+.+.|. .+| |..++. |++...+.|-.-.-+ . .....|=+ ++...||.=-|+.-+|
T Consensus 84 ~~~~~~i~~~~~~~~~-~~G---y~~I~t--P~lE~~el~~~~~g~----~-~~~~~y~f~D~~g~~l~LRpD~T~~iaR 152 (487)
T PLN02530 84 MRLRNWLFDHFREVSR-LFG---FEEVDA--PVLESEELYIRKAGE----E-ITDQLYNFEDKGGRRVALRPELTPSLAR 152 (487)
T ss_pred HHHHHHHHHHHHHHHH-HcC---CEeccc--cccchHHHhccccCc----c-cccceEEEECCCCCEEecCCCCcHHHHH
Confidence 3445555555443322 345 777654 555444444321101 1 11223322 2357999999998888
Q ss_pred HHHcC------CCeEEEecccccCCCcCCCCCCcceeeeEEEE
Q psy7414 150 LIRMG------LDNFVVFGDVYRRDQIDSTHFPVFHQADGVHL 186 (320)
Q Consensus 150 ~l~~~------~~~~l~~GdVYRRDeID~tHyPvFHQmEG~~v 186 (320)
.+.+. +-++..+|+|||.+..-+-.+-+|||...=.+
T Consensus 153 ~~~~~~~~~~~P~r~~y~g~vfR~e~~q~gr~REf~Q~giEii 195 (487)
T PLN02530 153 LVLQKGKSLSLPLKWFAIGQCWRYERMTRGRRREHYQWNMDII 195 (487)
T ss_pred HHHhcccccCCCeEEEEEcCEEcCcCCCCCCccceEEcCeeEe
Confidence 87542 23899999999999888888999999754444
No 82
>TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family. The seryl-tRNA synthetases from a few of the Archaea, represented by this model, are very different from the set of mutually more closely related seryl-tRNA synthetases from Eubacteria, Eukaryotes, and other Archaea. Although distantly homologous, the present set differs enough not to be recognized by the pfam model tRNA-synt_2b that recognizes the remainder of seryl-tRNA synthetases among oither class II amino-acyl tRNA synthetases.
Probab=76.54 E-value=55 Score=34.69 Aligned_cols=29 Identities=28% Similarity=0.461 Sum_probs=22.0
Q ss_pred eEEE-ecccccCCC-----cCCCCCCcceeeeEEEEe
Q psy7414 157 NFVV-FGDVYRRDQ-----IDSTHFPVFHQADGVHLL 187 (320)
Q Consensus 157 ~~l~-~GdVYRRDe-----ID~tHyPvFHQmEG~~v~ 187 (320)
++.- +|.|||++. +.+.| +|++.|++.+-
T Consensus 337 k~~~~s~~CFR~EaGstrGL~Rvh--EF~kvE~v~~~ 371 (520)
T TIGR00415 337 KFFDRSGWTYRWEAGGAKGLDRVH--EFLRVECVWIA 371 (520)
T ss_pred eEEEEecCeEeCCCCCCCCCceee--EEEEEEEEEEe
Confidence 5555 889999997 44555 58999999873
No 83
>PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=76.50 E-value=7.3 Score=37.47 Aligned_cols=92 Identities=15% Similarity=0.212 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccccCCCCCCCCCCCCCcccc-c----cccccccccCchhh
Q psy7414 73 LCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSKNDCYY-V----NREYLLRAHTTAHQ 147 (320)
Q Consensus 73 l~il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~L~~P~DHPsR~~~DTyY-i----n~~~lLRTHTSAhq 147 (320)
+..+++.+.+.|.+ +| |..+.. |+.-- +|.+....+... ++++| + .+...||.=.|.--
T Consensus 10 ~~~ie~~l~~~f~~-----~G---Y~~I~t--P~~E~---~d~~~~~~~~~~---~~~~~~~~~~~Gr~laLRpD~T~~i 73 (272)
T PRK12294 10 LKESETAFLKYFNK-----AD---YELVDF--SVIEK---LDWKQLNHEDLQ---QMGERSFWQHEHQIYALRNDFTDQL 73 (272)
T ss_pred HHHHHHHHHHHHHH-----cC---CeEeeC--Ccchh---HHhhhccccchh---hhheeeeecCCCCEEEEcCCCCHHH
Confidence 34566777777753 46 766643 33322 232222222222 22222 2 13578999999888
Q ss_pred HHHHHc---CCCeEEEecccccCCCcCCCCCCcceeeeEEEEee
Q psy7414 148 SELIRM---GLDNFVVFGDVYRRDQIDSTHFPVFHQADGVHLLN 188 (320)
Q Consensus 148 ~~~l~~---~~~~~l~~GdVYRRDeID~tHyPvFHQmEG~~v~~ 188 (320)
+|.... +..|+.+.|+|||.+. .|+|+ |+-+..
T Consensus 74 AR~~a~~~~~~~Rl~Y~g~VfR~~~-------~~~Q~-GvEliG 109 (272)
T PRK12294 74 LRYYSMYPTAATKVAYAGLIIRNNE-------AAVQV-GIENYA 109 (272)
T ss_pred HHHHHhcCCCCceEEEeccEeccCC-------Cccee-ceEEEC
Confidence 887754 3358999999999885 38898 555543
No 84
>PRK09194 prolyl-tRNA synthetase; Provisional
Probab=76.27 E-value=87 Score=32.95 Aligned_cols=107 Identities=18% Similarity=0.216 Sum_probs=61.4
Q ss_pred CChHHH-HHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccccCCCCCCCCCCCCCccccc----cccccccc-cC
Q psy7414 70 YHPLCM-LKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSKNDCYYV----NREYLLRA-HT 143 (320)
Q Consensus 70 ~HPl~i-l~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~L~~P~DHPsR~~~DTyYi----n~~~lLRT-HT 143 (320)
..|.+. +++.|++++.+.+. ..| |+.+. .|++...+-|.. ..|-.--..+.|.+ +++++||. |+
T Consensus 42 ~lP~g~~~~~~i~~~i~~~~~-~~G---~~ei~--~P~l~~~~l~~~----sg~~~~~~~emf~~~d~~~~~l~LrPt~e 111 (565)
T PRK09194 42 YLPLGLRVLRKIENIVREEMN-KIG---AQEVL--MPALQPAELWQE----SGRWEEYGPELLRLKDRHGRDFVLGPTHE 111 (565)
T ss_pred ECccHHHHHHHHHHHHHHHHH-HcC---CEEEE--CcccCcHHHHhh----cCCccccchhceEEecCCCCEEEECCCCh
Confidence 445543 56667766655443 245 77665 366654444432 23333333456666 34677875 43
Q ss_pred chhhHHHHH----c--C-CCeEEEecccccCCCcCCC---CCCcceeeeEEEEe
Q psy7414 144 TAHQSELIR----M--G-LDNFVVFGDVYRRDQIDST---HFPVFHQADGVHLL 187 (320)
Q Consensus 144 SAhq~~~l~----~--~-~~~~l~~GdVYRRDeID~t---HyPvFHQmEG~~v~ 187 (320)
..-..+++ + . +-++.-+|.|||.+.=+.. =+-+|+|.|+..+.
T Consensus 112 -~~~~~~~~~~~~s~~~LP~r~yqi~~~fR~E~rp~~Gl~R~reF~q~d~~~f~ 164 (565)
T PRK09194 112 -EVITDLVRNEIKSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFH 164 (565)
T ss_pred -HHHHHHHHhhhhhcccCCeEEEEeeCCccCCCCCCCcccccccEEEeeEEEEc
Confidence 22223332 1 1 2378889999999843533 36789999998874
No 85
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=72.95 E-value=8.7 Score=40.04 Aligned_cols=105 Identities=17% Similarity=0.353 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccccCCCCCCCCCCCCCccccc----cccccccccCchhhHH
Q psy7414 74 CMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSKNDCYYV----NREYLLRAHTTAHQSE 149 (320)
Q Consensus 74 ~il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~L~~P~DHPsR~~~DTyYi----n~~~lLRTHTSAhq~~ 149 (320)
..+++.|++++.+.+. ..| |..+.. |+.-...-|.. ..|=.--..+.|-+ ++.+.||.=|.+...+
T Consensus 206 ~~~~~~l~~~~~~~~~-~~G---y~ev~t--P~le~~~l~~~----sg~~~~~~~~my~~~d~~~~~~~LRP~~~~~~~~ 275 (575)
T PRK12305 206 AIIRREIEDYLRKEHL-KRG---YEFVYT--PHIGKSDLWKT----SGHLDNYKENMFPPMEIDEEEYYLKPMNCPGHIL 275 (575)
T ss_pred HHHHHHHHHHHHHHHH-HcC---CEEEEC--CccCCHHHHhh----cCCcccchhhcccccccCCceEEEecCCCHHHHH
Confidence 4577777777765543 345 776654 55433333322 12322222234444 3568999955555566
Q ss_pred HHHcC-------CCeEEEecccccCCCcCCC----CCCcceeeeEEEEee
Q psy7414 150 LIRMG-------LDNFVVFGDVYRRDQIDST----HFPVFHQADGVHLLN 188 (320)
Q Consensus 150 ~l~~~-------~~~~l~~GdVYRRDeID~t----HyPvFHQmEG~~v~~ 188 (320)
.+.+. +-++...|.|||.+.--.+ =+-.|||.|+-.+.+
T Consensus 276 ~~~~~~~s~~~lP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~~~~if~~ 325 (575)
T PRK12305 276 IYKSRLRSYRDLPLRLAEFGTVYRYEKSGVLHGLTRVRGFTQDDAHIFCT 325 (575)
T ss_pred HHhcccCChhhCCHhhEEecccccCCCCCCCcCcccccCeEEcceEEEeC
Confidence 66532 2389999999999974221 346899999986643
No 86
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=72.80 E-value=7.6 Score=38.91 Aligned_cols=102 Identities=13% Similarity=0.083 Sum_probs=63.7
Q ss_pred CChHHHHHHHHHHHHhhcccCCCCCCceEEecCCCCeecceecccc-CCCCCCCCCCCCCccccccc-----cccccccC
Q psy7414 70 YHPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDS-LLVAKDHVSRSKNDCYYVNR-----EYLLRAHT 143 (320)
Q Consensus 70 ~HPl~il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~-L~~P~DHPsR~~~DTyYin~-----~~lLRTHT 143 (320)
......+.+.|.+.|.. +| |..+.. |++.-.+.|-. .+--.+ ..+|-+.+ ...||.=-
T Consensus 21 ~~~~~~i~~~l~~~f~~-----~G---y~~I~t--P~~E~~e~~~~~~g~~~~------~~~y~f~D~~~g~~l~LRpD~ 84 (392)
T PRK12421 21 AQKIERLRRRLLDLFAS-----RG---YQLVMP--PLIEYLESLLTGAGQDLK------LQTFKLIDQLSGRLMGVRADI 84 (392)
T ss_pred HHHHHHHHHHHHHHHHH-----cC---CEEeeC--cchhhHHHHhccCCccch------hceEEEEcCCCCcEEEECCcC
Confidence 33445566666666643 46 777753 66655555532 222222 12344421 25699999
Q ss_pred chhhHHHHHcC-----CCeEEEecccccCCCcCCCCCCcceeeeEEEEe
Q psy7414 144 TAHQSELIRMG-----LDNFVVFGDVYRRDQIDSTHFPVFHQADGVHLL 187 (320)
Q Consensus 144 SAhq~~~l~~~-----~~~~l~~GdVYRRDeID~tHyPvFHQmEG~~v~ 187 (320)
|+--+|..... +-++.++|.|||.+.--.--+-+|||+..=.+.
T Consensus 85 T~~iaR~~a~~~~~~~p~R~~Y~g~VfR~~~~~~gr~rEf~Q~GvEiiG 133 (392)
T PRK12421 85 TPQVARIDAHLLNREGVARLCYAGSVLHTLPQGLFGSRTPLQLGAELYG 133 (392)
T ss_pred CHHHHHHHHhhcCCCCceEEEEeeeEEEcCCCcCCCcCccceeceEEeC
Confidence 98888866432 248999999999887555678899999655554
No 87
>PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A ....
Probab=71.85 E-value=5.9 Score=37.52 Aligned_cols=99 Identities=18% Similarity=0.310 Sum_probs=63.2
Q ss_pred HHHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccccCCCCCCCCCCCCCcccccc----ccccccccCchhhHHH
Q psy7414 75 MLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSKNDCYYVN----REYLLRAHTTAHQSEL 150 (320)
Q Consensus 75 il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~L~~P~DHPsR~~~DTyYin----~~~lLRTHTSAhq~~~ 150 (320)
.+++.|.+.|.+ .| |..++. |++...+.|-.-. +.+ .+ +.|.+. +..+||.=.|+--+|+
T Consensus 15 ~i~~~l~~~f~~-----~G---y~~i~~--P~le~~~~~~~~~-~~~--~~---~~~~~~D~~G~~l~LR~D~T~~iaR~ 78 (311)
T PF13393_consen 15 RIESKLREVFER-----HG---YEEIET--PLLEYYELFLDKS-GED--SD---NMYRFLDRSGRVLALRPDLTVPIARY 78 (311)
T ss_dssp HHHHHHHHHHHH-----TT----EE-B----SEEEHHHHHCHS-STT--GG---CSEEEECTTSSEEEE-SSSHHHHHHH
T ss_pred HHHHHHHHHHHH-----cC---CEEEEC--CeEeecHHhhhcc-ccc--hh---hhEEEEecCCcEeccCCCCcHHHHHH
Confidence 456666666653 46 888764 6665555555433 222 12 566664 3479999999988888
Q ss_pred HHcCC-----CeEEEecccccCCCcCCCCCCcceeeeEEEEeecc
Q psy7414 151 IRMGL-----DNFVVFGDVYRRDQIDSTHFPVFHQADGVHLLNRD 190 (320)
Q Consensus 151 l~~~~-----~~~l~~GdVYRRDeID~tHyPvFHQmEG~~v~~~~ 190 (320)
+.... -++.+.|.|||...--..++-+|+|+- +-++..+
T Consensus 79 ~a~~~~~~~~~r~~y~g~vfR~~~~~~g~~re~~Q~g-~Eiig~~ 122 (311)
T PF13393_consen 79 VARNLNLPRPKRYYYIGPVFRYERPGKGRPREFYQCG-FEIIGSS 122 (311)
T ss_dssp HHHCCGSSSSEEEEEEEEEEEEETTTTTBESEEEEEE-EEEESSS
T ss_pred HHHhcCcCCCceEEEEcceeeccccCCCCCceeEEEE-EEEECCC
Confidence 86531 389999999999987777889999995 5554433
No 88
>PRK08661 prolyl-tRNA synthetase; Provisional
Probab=64.46 E-value=65 Score=33.25 Aligned_cols=106 Identities=18% Similarity=0.164 Sum_probs=51.5
Q ss_pred CChHHH-HHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccccCCCCCCCCCCCCCccccc--------ccccccc
Q psy7414 70 YHPLCM-LKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSKNDCYYV--------NREYLLR 140 (320)
Q Consensus 70 ~HPl~i-l~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~L~~P~DHPsR~~~DTyYi--------n~~~lLR 140 (320)
.+|.+. +++.|++++.+.+. ..| |..+.. |.+-...-| .-=..|..-=..+.|.+ +..+.||
T Consensus 39 ~~P~g~~i~~~i~~~~~~~~~-~~G---~~ev~~--P~l~~~~~~---~~~~~h~~~f~~e~~~v~~~~~~~~~e~l~Lr 109 (477)
T PRK08661 39 IKPYGYAIWENIQKILDKLFK-ETG---HENVYF--PLLIPESLL---EKEKEHVEGFAPEVAWVTHGGGEKLEEKLALR 109 (477)
T ss_pred ECccHHHHHHHHHHHHHHHHH-HcC---CEEEEC--CccCCHHHH---hhhcCchhhcccccEEEEccCCCccCceEEEe
Confidence 345443 66777777765542 235 665543 443222111 11123332222234444 2346777
Q ss_pred c-cCchhh---HHHHHcC---CCeEEEecccccCCCcCCCC----CCcceeeeEEEE
Q psy7414 141 A-HTTAHQ---SELIRMG---LDNFVVFGDVYRRDQIDSTH----FPVFHQADGVHL 186 (320)
Q Consensus 141 T-HTSAhq---~~~l~~~---~~~~l~~GdVYRRDeID~tH----yPvFHQmEG~~v 186 (320)
. +..+|- .+.+++. +-++.-.|.|||.+.- ++ .-.|.|.||-.+
T Consensus 110 PtsE~~i~~~~~~~i~SyrdLPlrl~q~~~vfR~E~~--~rgl~R~rEF~~~E~h~~ 164 (477)
T PRK08661 110 PTSETIIYPMYKKWIQSYRDLPLLYNQWVNVVRWETK--TRPFLRTREFLWQEGHTA 164 (477)
T ss_pred cCCcHHHHHHHHhhhcchhhcCHHHhcccceeeCCCC--CCCcceeeeEEEcceeee
Confidence 5 322222 1222222 2377789999999973 55 335666666433
No 89
>KOG2411|consensus
Probab=60.48 E-value=14 Score=39.11 Aligned_cols=58 Identities=19% Similarity=0.375 Sum_probs=46.0
Q ss_pred CCCCCCccccccccccccccCchhhHH--HHHcCCCeEEEecccccCCCcCCCCCCcceeeeEEEEe
Q psy7414 123 VSRSKNDCYYVNREYLLRAHTTAHQSE--LIRMGLDNFVVFGDVYRRDQIDSTHFPVFHQADGVHLL 187 (320)
Q Consensus 123 PsR~~~DTyYin~~~lLRTHTSAhq~~--~l~~~~~~~l~~GdVYRRDeID~tHyPvFHQmEG~~v~ 187 (320)
|+|.+.-.||-=. -|..|-. +|..|.++|+=+|+|||-+..-+---|+|.|+|-=.-|
T Consensus 220 Ptr~~~g~FYaLp-------QSPQQfKQlLMvsGidrYyQiARCfRDEdlR~DRQPEFTQvD~EMsF 279 (628)
T KOG2411|consen 220 PTRTPRGKFYALP-------QSPQQFKQLLMVSGIDRYYQIARCFRDEDLRADRQPEFTQVDMEMSF 279 (628)
T ss_pred ccCCCCCceeecC-------CCHHHHHHHHHHhchhhHHhHHhhhcccccCcccCCcceeeeeEEec
Confidence 7788877788432 3666665 34678899999999999998888889999999987776
No 90
>COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=58.17 E-value=35 Score=36.49 Aligned_cols=58 Identities=19% Similarity=0.339 Sum_probs=42.0
Q ss_pred CCCCCCccccccccccccccCchhhHH--HHHcCCCeEEEecccccCCCcCCCCCCcceeeeEEEEe
Q psy7414 123 VSRSKNDCYYVNREYLLRAHTTAHQSE--LIRMGLDNFVVFGDVYRRDQIDSTHFPVFHQADGVHLL 187 (320)
Q Consensus 123 PsR~~~DTyYin~~~lLRTHTSAhq~~--~l~~~~~~~l~~GdVYRRDeID~tHyPvFHQmEG~~v~ 187 (320)
|||-...+||-=.+ |+-|-. +|-+|-++|+=+++|||-+..=+---|+|.|+|-=.-|
T Consensus 182 PSRv~~G~FYALPQ-------SPQlfKQLLMvsGfdRYyQIarCFRDEDlRaDRQPEFTQiD~EmSF 241 (585)
T COG0173 182 PSRVHPGKFYALPQ-------SPQLFKQLLMVAGFDRYYQIARCFRDEDLRADRQPEFTQIDLEMSF 241 (585)
T ss_pred ccccCCCceeecCC-------CHHHHHHHHHHhcccceeeeeeeecccccccccCCcceeEeEEeec
Confidence 67777777995432 333333 34578899999999999887755556999999876555
No 91
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=56.51 E-value=36 Score=35.35 Aligned_cols=105 Identities=16% Similarity=0.242 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccccCCCCCCCCCCCCCccccc----cccccccccCchhhHH
Q psy7414 74 CMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSKNDCYYV----NREYLLRAHTTAHQSE 149 (320)
Q Consensus 74 ~il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~L~~P~DHPsR~~~DTyYi----n~~~lLRTHTSAhq~~ 149 (320)
..+++.|++++.+.+. ..| |..+.. |++....-|-.= .|-..-..+-|-+ ++.++||.=+++...+
T Consensus 200 ~~~~~~i~~~~~~~~~-~~G---~~ev~t--P~l~~~~l~~~s----g~~~~~~~emy~~~d~~~~~~~LrP~~~~~i~~ 269 (563)
T TIGR00418 200 ATIRNLLEDFVRQKQI-KYG---YMEVET--PIMYDLELWEIS----GHWDNYKERMFPFTELDNREFMLKPMNCPGHFL 269 (563)
T ss_pred HHHHHHHHHHHHHHHH-HcC---CEEEEC--CccCCHHHHHhc----CCcccchhhcceeccCCCceEEEecCCCHHHHH
Confidence 3466667766655442 235 777654 555444444331 2332223334444 2568899888888888
Q ss_pred HHHcC-------CCeEEEecccccCCCcCC----CCCCcceeeeEEEEee
Q psy7414 150 LIRMG-------LDNFVVFGDVYRRDQIDS----THFPVFHQADGVHLLN 188 (320)
Q Consensus 150 ~l~~~-------~~~~l~~GdVYRRDeID~----tHyPvFHQmEG~~v~~ 188 (320)
++.+. +-++...|.|||++.=-+ .=+-+|||.|+-.+..
T Consensus 270 ~~~~~~~s~~~lP~rl~~~g~~fR~E~~g~~~Gl~R~reF~q~~~~~~~~ 319 (563)
T TIGR00418 270 IFKSSLRSYRDLPLRIAELGYSHRYEQSGELHGLMRVRGFTQDDAHIFCT 319 (563)
T ss_pred HHhCcCCChHHCCceeeEeccccCCCCCcCCcCcccccceEEeeeEEEcC
Confidence 77543 238889999999994220 0345799999987754
No 92
>CHL00192 syfB phenylalanyl-tRNA synthetase beta chain; Provisional
Probab=53.38 E-value=20 Score=38.84 Aligned_cols=56 Identities=20% Similarity=0.215 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHhCCCccEEEec----cCCCCCCCceEEEeee-CCceEEEeecccccccccC
Q psy7414 259 EQKLKNSLVKLAKILFGDDIQMRWIS----EYFPFTHPSWELEILL-NDKWVEILGCGVIRHEILD 319 (320)
Q Consensus 259 ~~~LK~tLe~lv~~lFg~~~~~Rw~~----ayFPFTePS~EleV~~-~g~WLEvLGCGvv~~~vL~ 319 (320)
..++|+.|+.++..+ | +...|.+ +-.|+=+|.--.+|+. +|+ +|+-.|.+||++++
T Consensus 516 F~d~Kg~le~ll~~l-~--i~~~~~~~~~~~~~~~~hPgrsA~I~~~~g~--~iG~iG~lhP~v~~ 576 (704)
T CHL00192 516 WFEAKGIIENFFQKL-N--LPIYWKKYSDLDEKINFHPYCTSEIFLSNGQ--KIGIFGQLHPLLAN 576 (704)
T ss_pred HHHHHHHHHHHHHHC-C--CcEEEEeccccccCcCCCCCcEEEEEEECCc--EEEEEEEECHHHHH
Confidence 478999999999865 4 4456655 3456559999999998 564 47778999999875
No 93
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=53.25 E-value=41 Score=35.51 Aligned_cols=104 Identities=16% Similarity=0.285 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccccCCCCCCCCCCCCCccccc----cccccccccCchhhHH
Q psy7414 74 CMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSKNDCYYV----NREYLLRAHTTAHQSE 149 (320)
Q Consensus 74 ~il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~L~~P~DHPsR~~~DTyYi----n~~~lLRTHTSAhq~~ 149 (320)
..+++.|++++.+.+. ..| |..+.. |++....-|..-+ .-|+.. .+.|.+ ++.+.||.=|++..++
T Consensus 270 ~~~~~~i~~~~~~~~~-~~G---y~ei~t--P~le~~~l~~~~g-~~~~~~---~~my~~~d~~~~~~~LRP~~~~~~~r 339 (638)
T PRK00413 270 WTIRRELERYIRRKLR-KAG---YQEVKT--PQILDRELWETSG-HWDHYR---ENMFPTTESDGEEYALKPMNCPGHVQ 339 (638)
T ss_pred HHHHHHHHHHHHHHHH-HCC---CEEEEC--CeeCCHHHHHhcC-Chhhhh---hccceeecCCCcEEEEecCCcHHHHH
Confidence 4467777777655443 345 776654 5554433333211 112211 223443 3468999977777677
Q ss_pred HHHcC-------CCeEEEecccccCCCcCCC----CCCcceeeeEEEEe
Q psy7414 150 LIRMG-------LDNFVVFGDVYRRDQIDST----HFPVFHQADGVHLL 187 (320)
Q Consensus 150 ~l~~~-------~~~~l~~GdVYRRDeID~t----HyPvFHQmEG~~v~ 187 (320)
++.+. +-++...|.|||.+.--+. =+-.|||.|+-.+.
T Consensus 340 ~~~~~~~s~~~lP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~~~~~~g 388 (638)
T PRK00413 340 IYKQGLRSYRDLPLRLAEFGTVHRYEPSGALHGLMRVRGFTQDDAHIFC 388 (638)
T ss_pred HHhCcCCChhhCCceeeeccCeecCCCCCCCcCcceeeeeEEeeEEEEc
Confidence 77642 2389999999999975322 24689999988764
No 94
>PRK00629 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed
Probab=52.75 E-value=24 Score=38.74 Aligned_cols=57 Identities=25% Similarity=0.265 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHhCCCccEEEec-cCCCCCCCceEEEeeeCCceEEEeecccccccccC
Q psy7414 259 EQKLKNSLVKLAKILFGDDIQMRWIS-EYFPFTHPSWELEILLNDKWVEILGCGVIRHEILD 319 (320)
Q Consensus 259 ~~~LK~tLe~lv~~lFg~~~~~Rw~~-ayFPFTePS~EleV~~~g~WLEvLGCGvv~~~vL~ 319 (320)
..++|+.|+.++..+ |-+ .+.|.+ ...|+-+|.-..+|+++|+. |+=.|.+||++++
T Consensus 608 f~~~Kg~le~ll~~l-~~~-~~~~~~~~~~~~~hPg~sA~I~~~g~~--iG~iG~lhP~v~~ 665 (791)
T PRK00629 608 FFDLKGDVEALLEAL-GLP-EVEFVAEFEAAALHPGRSAEIYLDGKV--IGFIGELHPKVLK 665 (791)
T ss_pred HHHHHHHHHHHHHHc-CCC-ceeEeecCCCcCcCCceEEEEEECCEE--EEEEEEECHHHHH
Confidence 478999999999865 532 367777 77786699999999998853 4556999999875
No 95
>PRK14894 glycyl-tRNA synthetase; Provisional
Probab=50.25 E-value=68 Score=34.17 Aligned_cols=35 Identities=11% Similarity=0.066 Sum_probs=24.5
Q ss_pred CccEEEecc----CCCCCCCceEEEeeeC-CceEEEeecc
Q psy7414 277 DIQMRWISE----YFPFTHPSWELEILLN-DKWVEILGCG 311 (320)
Q Consensus 277 ~~~~Rw~~a----yFPFTePS~EleV~~~-g~WLEvLGCG 311 (320)
+-++|++.- -=-|..-.|.+|+.+. .+|+|+-||-
T Consensus 227 ~~~lrfr~h~~~ElAHYa~~~~D~e~~~p~~Gw~E~~Gia 266 (539)
T PRK14894 227 RSRITIYDVPPDELAHYSKRTFDLMYDYPNIGVQEIEGIA 266 (539)
T ss_pred HHHeeeeecCcHHhhhhhhccEEEEEECCCCCeEEEEEee
Confidence 346787742 1135567788999886 5899999983
No 96
>TIGR00472 pheT_bact phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from Bacteria other than spirochetes, as well as a chloroplast-encoded form from Porphyra purpurea. The chloroplast-derived sequence is considerably shorter at the amino end, however.
Probab=47.32 E-value=35 Score=37.43 Aligned_cols=58 Identities=24% Similarity=0.182 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHhCCCccEEEe-ccCCCCCCCceEEEeeeCCceEEEeecccccccccC
Q psy7414 259 EQKLKNSLVKLAKILFGDDIQMRWI-SEYFPFTHPSWELEILLNDKWVEILGCGVIRHEILD 319 (320)
Q Consensus 259 ~~~LK~tLe~lv~~lFg~~~~~Rw~-~ayFPFTePS~EleV~~~g~WLEvLGCGvv~~~vL~ 319 (320)
..++|+.|+.++..+ |-..+..+. ++..|+=+|....+|+++|+. |+=.|.+||++++
T Consensus 615 f~d~Kg~le~ll~~l-~~~~~~~~~~~~~~~~~hpg~sA~I~~~~~~--iG~iG~lhP~v~~ 673 (798)
T TIGR00472 615 FYDLKGDVESLLELL-GLSDDVYFKNTAENEELHPGQSATIYLKGKK--IGFIGELHPEIAK 673 (798)
T ss_pred hHHHHHHHHHHHHHc-CCCcceEEeecCCCCCCCCCcEEEEEECCEE--EEEEEEECHHHHH
Confidence 368999999999865 432123334 366675599999999998853 4556899999875
No 97
>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP binding and hydrolysis. This alignment contains only sequences from the GlyRS form which homodimerizes. The heterotetramer glyQ is in a different family of class II aaRS. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the N-terminus of the accessory subunit of mitochondrial polymerase gamma (Pol gamma b). Pol gamma b stimulates processive DNA synthesis and is functional as a homodimer, which can associate with the catalytic subunit Pol gamma alpha to form a heterotrimer. Despite significant both structural and sequence similarity with Gly
Probab=46.76 E-value=42 Score=31.45 Aligned_cols=108 Identities=21% Similarity=0.281 Sum_probs=60.2
Q ss_pred CChHHH-HHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccccCCCCCCCCCCCCCccccccccccccccCch---
Q psy7414 70 YHPLCM-LKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSKNDCYYVNREYLLRAHTTA--- 145 (320)
Q Consensus 70 ~HPl~i-l~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~L~~P~DHPsR~~~DTyYin~~~lLRTHTSA--- 145 (320)
..|++. +++.|+++..+.+.... .+|..++. |++....-|-.-.=|.|. . +....||.=|+.
T Consensus 27 ~~P~g~~l~~~i~~~~~~~~~~~g--~~~~~i~t--P~i~~~~mf~~~~g~~d~-----~-----~~~~~Lrp~~~~~~~ 92 (254)
T cd00774 27 YGPLGVELKNNIKSAWRKSFVLEE--EDMLEIDS--PIITPELMFKTSIGPVES-----G-----GNLGYLRPETAQGIF 92 (254)
T ss_pred cCchHHHHHHHHHHHHHHHHHhcC--CCeEEEec--cccCCHHHheeeecccCC-----C-----CcccccCCcccchHH
Confidence 455544 67777777766554322 12766664 666555333221001111 1 125677875552
Q ss_pred -hhHHHHHc---C-CCeEEEecccccCCCcCC---CCCCcceeeeEEEEeeccc
Q psy7414 146 -HQSELIRM---G-LDNFVVFGDVYRRDQIDS---THFPVFHQADGVHLLNRDQ 191 (320)
Q Consensus 146 -hq~~~l~~---~-~~~~l~~GdVYRRDeID~---tHyPvFHQmEG~~v~~~~~ 191 (320)
.=.+.... . +-++.-+|.|||++.--+ .=+-+|.|+|+-...++++
T Consensus 93 ~~~~~~~~~~~~~lP~~~~qig~~fR~E~~~~~gl~R~ReF~q~d~~~f~~~~~ 146 (254)
T cd00774 93 VNFKNLLEFNRRKLPFGVAQIGKSFRNEISPRNGLFRVREFTQAEIEFFVDPEK 146 (254)
T ss_pred HHHHHHHHHhCCCCCchhhhhchhhccccCcccceeeeccchhhheeeeECCCC
Confidence 22233321 2 237888999999996443 3577899999988865543
No 98
>PRK14799 thrS threonyl-tRNA synthetase; Provisional
Probab=44.30 E-value=39 Score=35.78 Aligned_cols=98 Identities=18% Similarity=0.235 Sum_probs=62.9
Q ss_pred HHHHHHHHHHhhcccCCCCCCceEEecCCCCeec---------ceeccccCCCCCCCCCCCCCccccccccccccccCch
Q psy7414 75 MLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVT---------VEENFDSLLVAKDHVSRSKNDCYYVNREYLLRAHTTA 145 (320)
Q Consensus 75 il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs---------~~~NFD~L~~P~DHPsR~~~DTyYin~~~lLRTHTSA 145 (320)
.+++.|++++.+.+.. .| |..+.. |.+. -+++|..-.++.++-+ +++.||.=..+
T Consensus 169 ~i~~~L~~~~r~~~~~-~G---y~eV~T--P~i~~~eL~k~SGh~~~y~~~mf~~~~~~----------e~~~LrPm~cp 232 (545)
T PRK14799 169 TIRNELIAFMREINDS-MG---YQEVYT--SHVFKTDIWKISGHYTLYRDKLIVFNMEG----------DEYGVKPMNCP 232 (545)
T ss_pred HHHHHHHHHHHHHHHH-cC---CeEEEC--CccchHHHHhhccccccchhhcceeeccC----------ceEEeccCCCH
Confidence 4788888888665542 35 777765 4431 1234554444434332 35677876667
Q ss_pred hhHHHHHcC-------CCeEEEecccccCCCcCC----CCCCcceeeeEEEEee
Q psy7414 146 HQSELIRMG-------LDNFVVFGDVYRRDQIDS----THFPVFHQADGVHLLN 188 (320)
Q Consensus 146 hq~~~l~~~-------~~~~l~~GdVYRRDeID~----tHyPvFHQmEG~~v~~ 188 (320)
..+.++.+. +-++.-.|.|||++.--+ .=+-.|+|.|+=..-+
T Consensus 233 ~~~~~~~~~~~SyrdLPlR~~e~g~vfR~E~sg~l~GL~RvReF~Q~DaHif~~ 286 (545)
T PRK14799 233 AHILIYKSKPRTYRDLPIRFSEFGHVYRWEKKGELYGLLRVRGFVQDDGHIFLR 286 (545)
T ss_pred HHHHHHhccccChhhCCHhhEEecceecCCCCCCccccccceeEEEcccEEEeC
Confidence 677777543 238889999999998765 3577899998876533
No 99
>PRK07080 hypothetical protein; Validated
Probab=41.88 E-value=87 Score=31.24 Aligned_cols=34 Identities=15% Similarity=0.226 Sum_probs=24.2
Q ss_pred eEEEecccccCCCc-CCCCCCcceeeeEEEEeecc
Q psy7414 157 NFVVFGDVYRRDQI-DSTHFPVFHQADGVHLLNRD 190 (320)
Q Consensus 157 ~~l~~GdVYRRDeI-D~tHyPvFHQmEG~~v~~~~ 190 (320)
.|-+.|.+||++.. |-+=.=.|||.|.|++.+++
T Consensus 154 ~~dv~g~CFR~E~s~dl~Rl~~F~mrE~V~iGt~e 188 (317)
T PRK07080 154 LVDVASYCFRHEPSLDPARMQLFRMREYVRIGTPE 188 (317)
T ss_pred EEEeeeeeeccCCCCCcHHHhheeeeEEEEecCHH
Confidence 46669999999972 22223379999999996443
No 100
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=40.35 E-value=4.5e+02 Score=27.38 Aligned_cols=107 Identities=16% Similarity=0.172 Sum_probs=66.7
Q ss_pred CChHHHHHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccccCCCCCCCCCCCCCccccccccccccccCchhhHH
Q psy7414 70 YHPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSKNDCYYVNREYLLRAHTTAHQSE 149 (320)
Q Consensus 70 ~HPl~il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~L~~P~DHPsR~~~DTyYin~~~lLRTHTSAhq~~ 149 (320)
..++..+-..+.+++..... ..| |..+. +|.......-+.-++=+. -..|-|++..+-+-=.-|+-+..-
T Consensus 170 ~~~~a~L~rAL~~f~ld~~~-~~G---f~e~~--~P~lv~~e~m~gtgqlpk----f~e~~y~v~~~~~~LipTaEvpl~ 239 (429)
T COG0172 170 KGKGARLERALIQFMLDLHT-KHG---FTEVL--PPYLVNLESMFGTGQLPK----FEEDLYKVEDPDLYLIPTAEVPLT 239 (429)
T ss_pred cCHHHHHHHHHHHHHHHHHH-HcC---ceEee--CceeecHHHhhccCCCCC----CcccceEecCCCEEEEecchhhhH
Confidence 35778888888888876544 456 87763 465544444333333222 567889997752222345555554
Q ss_pred HHHcC--------CCeEEEecccccCCC---------cCCCCCCcceeeeEEEEee
Q psy7414 150 LIRMG--------LDNFVVFGDVYRRDQ---------IDSTHFPVFHQADGVHLLN 188 (320)
Q Consensus 150 ~l~~~--------~~~~l~~GdVYRRDe---------ID~tHyPvFHQmEG~~v~~ 188 (320)
-|.++ +-+|....-+||++. +.+.|. ||-+|-+.+-.
T Consensus 240 ~l~~~Eil~~~~LP~k~~~~S~cFR~EAGs~GrdtrGliRvHQ--F~KVE~v~~~~ 293 (429)
T COG0172 240 NLHRDEILDEEDLPIKYTAYSPCFRSEAGSAGKDTRGLIRVHQ--FDKVELVVITK 293 (429)
T ss_pred HhhcccccccccCCeeeEEEChhhhcccccccccccceeeeee--eeeEEEEEEeC
Confidence 44322 237777789999986 456665 99999988853
No 101
>PLN02908 threonyl-tRNA synthetase
Probab=35.60 E-value=3.5e+02 Score=29.30 Aligned_cols=107 Identities=14% Similarity=0.283 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccccCCCCCCCCCCCCCccccc---cccccccccCchhhHHH
Q psy7414 74 CMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSKNDCYYV---NREYLLRAHTTAHQSEL 150 (320)
Q Consensus 74 ~il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~L~~P~DHPsR~~~DTyYi---n~~~lLRTHTSAhq~~~ 150 (320)
..+++.|.+++.+.+.. .| |..+.. |.+-...-|. . ..|=..-..+-|-+ +.++.||.=+......+
T Consensus 321 ~~i~~~l~~~~~~~~~~-~G---~~ev~t--P~l~~~~l~~---~-sGh~~~~~~~mf~~~~~~~~~~Lrp~~~~~~~~~ 390 (686)
T PLN02908 321 ARIYNKLMDFIREQYWE-RG---YDEVIT--PNIYNMDLWE---T-SGHAAHYKENMFVFEIEKQEFGLKPMNCPGHCLM 390 (686)
T ss_pred HHHHHHHHHHHHHHHHH-cC---CEEEEC--CccccHHHHh---h-cCCccccchhccEEecCCeeEEEcCCCcHHHHHH
Confidence 34777788777665543 35 777754 4432211111 1 22222222233333 24566776555555666
Q ss_pred HHcC-------CCeEEEecccccCCCcCC----CCCCcceeeeEEEEeecc
Q psy7414 151 IRMG-------LDNFVVFGDVYRRDQIDS----THFPVFHQADGVHLLNRD 190 (320)
Q Consensus 151 l~~~-------~~~~l~~GdVYRRDeID~----tHyPvFHQmEG~~v~~~~ 190 (320)
+.+. +-++.-.|.|||++.=-+ .=+-.|+|.|+-...+++
T Consensus 391 ~~~~~~s~r~LPlr~~~~g~~fR~E~~~~l~Gl~RvReF~q~d~~if~~~~ 441 (686)
T PLN02908 391 FAHRVRSYRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCRED 441 (686)
T ss_pred HhccccChhhCCHhHEEeeccccCCCCcCCcCccccccEEEeeEEEEcCHH
Confidence 6432 237888999999997532 235679999998865433
No 102
>KOG1936|consensus
Probab=32.25 E-value=28 Score=36.36 Aligned_cols=50 Identities=26% Similarity=0.196 Sum_probs=39.3
Q ss_pred ccccccCchhhHHHHHcCCC---eEEEecccccCCCc--CCCCCCcceeeeEEEE
Q psy7414 137 YLLRAHTTAHQSELIRMGLD---NFVVFGDVYRRDQI--DSTHFPVFHQADGVHL 186 (320)
Q Consensus 137 ~lLRTHTSAhq~~~l~~~~~---~~l~~GdVYRRDeI--D~tHyPvFHQmEG~~v 186 (320)
.-||.--|.-=+|++..++- +-..+|+|||||.- -+--|-+|+|.+-=..
T Consensus 129 ~SLRYDLTVPfARylAmNki~sikRy~iAkVyRRd~P~mtrGR~REFYQcDFDIA 183 (518)
T KOG1936|consen 129 CSLRYDLTVPFARYLAMNKITSIKRYHIAKVYRRDQPAMTRGRYREFYQCDFDIA 183 (518)
T ss_pred EEeecccccHHHHHHHHcccccceeeeEEEEEeccCchhhchhhhhhhccCcccc
Confidence 46888888888999987642 45579999999975 6667889999986555
No 103
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=30.82 E-value=17 Score=36.31 Aligned_cols=150 Identities=17% Similarity=0.180 Sum_probs=98.2
Q ss_pred CeecceeccccCCCCCCCCCCCCCccccccccccccccCchhhHHHHHcCC---CeEEEecccccCCCcCCCCCCcceee
Q psy7414 105 PVVTVEENFDSLLVAKDHVSRSKNDCYYVNREYLLRAHTTAHQSELIRMGL---DNFVVFGDVYRRDQIDSTHFPVFHQA 181 (320)
Q Consensus 105 pVVs~~~NFD~L~~P~DHPsR~~~DTyYin~~~lLRTHTSAhq~~~l~~~~---~~~l~~GdVYRRDeID~tHyPvFHQm 181 (320)
.....+.++++..+..++|+| .+|..+.+.|+.+...+.--.+..|- ++-.+-.+.|..|.+.-.+++..++|
T Consensus 83 ~~~~~~~~l~~e~~dv~lp~~----~~~~G~~Hpl~~~~e~i~~iF~~mGF~~~~gp~IE~d~~NFDaLn~P~dHPARdm 158 (335)
T COG0016 83 EAAGLWERLAFEKIDVTLPGR----RIYPGSLHPLTQTIEEIEDIFLGMGFTEVEGPEIETDFYNFDALNIPQDHPARDM 158 (335)
T ss_pred HHHHHHHhhhccCCCcCCCCc----cCCCCCcChHHHHHHHHHHHHHHcCceeccCCcccccccchhhhcCCCCCCcccc
Confidence 344678999999999999999 78889999999998888877777662 35588999999999999999999999
Q ss_pred eEEEEeeccccccCccCcccccceecccCCCchhhhhhhhccccccccCcceeeeecCCC-CCcccccccchh----HHH
Q psy7414 182 DGVHLLNRDQVSRGDIGVGTSLKIMTIFTPTSQEYFYIKKCNKISESIGQNIVIFEQGGV-HTDEKQARHTLD----ATK 256 (320)
Q Consensus 182 EG~~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~-~~~~~q~~h~~~----~~~ 256 (320)
..--.+.+++- .+-+.||-+|... ..+.+.... .+.+|--+.+ |+...-.+|+++ +--
T Consensus 159 qDTFy~~~~~~---------~~lLRTHTs~vq~--R~l~~~~~~------P~k~~~~grvyR~D~~DaTHs~~FhQiEGl 221 (335)
T COG0016 159 QDTFYLKDDRE---------KLLLRTHTSPVQA--RTLAENAKI------PIKIFSPGRVYRNDTVDATHSPEFHQIEGL 221 (335)
T ss_pred cceEEEcCCCC---------ceeecccCcHhhH--HHHHhCCCC------CceEecccceecCCCCCcccchheeeeEEE
Confidence 99888755420 1123344343322 223332211 1222222232 555566778775 122
Q ss_pred HHHHHHH-HHHHHHHHHHhC
Q psy7414 257 VMEQKLK-NSLVKLAKILFG 275 (320)
Q Consensus 257 ~v~~~LK-~tLe~lv~~lFg 275 (320)
.|..++- +.|..+++.++.
T Consensus 222 vvd~~~s~~~Lkg~L~~f~~ 241 (335)
T COG0016 222 VVDKNISFADLKGTLEEFAK 241 (335)
T ss_pred EEeCCccHHHHHHHHHHHHH
Confidence 3334444 566666666653
No 104
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=29.12 E-value=2.7e+02 Score=29.05 Aligned_cols=40 Identities=18% Similarity=0.375 Sum_probs=31.0
Q ss_pred HHHHHcCCCeEEEecccccCCCcCC-CCCCcceeeeEEEEe
Q psy7414 148 SELIRMGLDNFVVFGDVYRRDQIDS-THFPVFHQADGVHLL 187 (320)
Q Consensus 148 ~~~l~~~~~~~l~~GdVYRRDeID~-tHyPvFHQmEG~~v~ 187 (320)
.+++.....+++.+|-+||-++-|. .|.-+|.|+|.=.-|
T Consensus 192 ke~~~~al~rVf~igP~FRAE~s~T~RHL~EF~~ld~Emaf 232 (435)
T COG0017 192 KEALAAALERVFTIGPTFRAEKSNTRRHLSEFWMLDPEMAF 232 (435)
T ss_pred HHHHHHHhCceEEecCceecCCCCCcchhhhHheecceecc
Confidence 3555555789999999999988774 478888888876554
No 105
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi.
Probab=28.33 E-value=4.1e+02 Score=28.27 Aligned_cols=101 Identities=15% Similarity=0.119 Sum_probs=53.4
Q ss_pred HHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccccCCCCCCCCCCCCCcccccc----ccccccc-----cCchh
Q psy7414 76 LKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSKNDCYYVN----REYLLRA-----HTTAH 146 (320)
Q Consensus 76 l~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~L~~P~DHPsR~~~DTyYin----~~~lLRT-----HTSAh 146 (320)
+++.|++++.+.+. ..| |+.+.- |++...+-|.. ..|-.--....|.+. ++++||. +|..+
T Consensus 49 v~~~I~~~i~~~~~-~~G---~~ei~~--P~l~~~el~~~----sg~~~~~~~emf~~~dr~~~~l~LrPT~Ee~~t~~~ 118 (568)
T TIGR00409 49 VLKKVENIVREEMN-KDG---AIEVLL--PALQPAELWQE----SGRWDTYGPELLRLKDRKGREFVLGPTHEEVITDLA 118 (568)
T ss_pred HHHHHHHHHHHHHH-HcC---CEEEEC--CccchHHHHhh----cCCCCccchhcEEEecCCCCEEEEcCCCcHHHHHHH
Confidence 55666666554432 235 766643 44433222221 112111223445553 3578886 44322
Q ss_pred hHHHHHc--C-CCeEEEecccccCCCcCCC---CCCcceeeeEEEEe
Q psy7414 147 QSELIRM--G-LDNFVVFGDVYRRDQIDST---HFPVFHQADGVHLL 187 (320)
Q Consensus 147 q~~~l~~--~-~~~~l~~GdVYRRDeID~t---HyPvFHQmEG~~v~ 187 (320)
.+.+.+ . +-++..+|.|||.+.=++. =+-+|+|.|+..+.
T Consensus 119 -~~~i~syr~LPlrlyqi~~~fR~E~rpr~Gl~R~REF~~~d~~~f~ 164 (568)
T TIGR00409 119 -RNEIKSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFH 164 (568)
T ss_pred -HHHHhhccccCeEEEEeeCEeeCCCCCCCCccccccEEEEEEEEEe
Confidence 223322 2 3378889999998843332 35689999998874
No 106
>PRK12325 prolyl-tRNA synthetase; Provisional
Probab=26.75 E-value=2.2e+02 Score=28.99 Aligned_cols=107 Identities=13% Similarity=0.104 Sum_probs=55.5
Q ss_pred CChHH-HHHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccccCCCCCCCCCCCCCccccc----cccccccc-cC
Q psy7414 70 YHPLC-MLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSKNDCYYV----NREYLLRA-HT 143 (320)
Q Consensus 70 ~HPl~-il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~L~~P~DHPsR~~~DTyYi----n~~~lLRT-HT 143 (320)
.+|.+ .+++.|++++.+.+. ..| |+.+.. |++...+.|. -..|-.--..+-|.+ +++++||. |.
T Consensus 42 ~lP~g~~i~~~i~~~i~~~~~-~~G---~~ev~~--P~l~~~~l~~----~sg~~~~~~~emf~~~d~~~~~~~L~Pt~e 111 (439)
T PRK12325 42 WLPLGLKVLKKIENIVREEQN-RAG---AIEILM--PTIQPADLWR----ESGRYDAYGKEMLRIKDRHDREMLYGPTNE 111 (439)
T ss_pred ECCcHHHHHHHHHHHHHHHHH-HcC---CEEEEC--CccccHHHHh----hcCCccccchhheEEecCCCCEEEEcCCCc
Confidence 34444 367777777765543 235 666543 5554333331 112322222333444 35678884 43
Q ss_pred chhh---HHHHH---cCCCeEEEecccccCCCcCCC---CCCcceeeeEEEE
Q psy7414 144 TAHQ---SELIR---MGLDNFVVFGDVYRRDQIDST---HFPVFHQADGVHL 186 (320)
Q Consensus 144 SAhq---~~~l~---~~~~~~l~~GdVYRRDeID~t---HyPvFHQmEG~~v 186 (320)
.+|- ....+ +-+-++.-.|.|||.+.-+.. =.-.|+|-|+-..
T Consensus 112 ~~~~~~~~~~~~syrdLPlrl~q~~~~fR~E~~~~~GL~R~reF~~~D~h~f 163 (439)
T PRK12325 112 EMITDIFRSYVKSYKDLPLNLYHIQWKFRDEIRPRFGVMRGREFLMKDAYSF 163 (439)
T ss_pred HHHHHHHHHHhhhchhhchHheEecCEecCCCCCCCCccccceEeEeccEEE
Confidence 3322 11222 223478889999999854521 2457888887766
No 107
>PRK03991 threonyl-tRNA synthetase; Validated
Probab=26.52 E-value=8.4e+02 Score=26.33 Aligned_cols=104 Identities=14% Similarity=0.213 Sum_probs=56.0
Q ss_pred HHHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccccCCCCCCCCCCCCCcccccc---ccccccccCchhhHHHH
Q psy7414 75 MLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSKNDCYYVN---REYLLRAHTTAHQSELI 151 (320)
Q Consensus 75 il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~L~~P~DHPsR~~~DTyYin---~~~lLRTHTSAhq~~~l 151 (320)
.+++.|++++.+.+.. .| |..+. .|..-....+ -=..|-.+=..+-|.+. ++++||.=+-..+.-.+
T Consensus 228 ~i~~~L~~~~~~~~~~-~G---~~~V~--tP~~~~~~~~----~~sgh~~~f~e~my~v~~~~e~l~Lrp~~c~~~~~~~ 297 (613)
T PRK03991 228 LIRDLLEDYVYNLVVE-LG---AMPVE--TPIMYDLSHP----AIREHADKFGERQYRVKSDKKDLMLRFAACFGQFLML 297 (613)
T ss_pred HHHHHHHHHHHHHHHH-CC---CEEEE--CCeecChhHH----hhcccccccchhceEecCCCceEEEecCCCHHHHHHH
Confidence 4788888888765432 35 44432 2433111111 11223233233445542 35777764444444444
Q ss_pred HcC-------CCeEEEecc-cccCCCcCCCC----CCcceeeeEEEEee
Q psy7414 152 RMG-------LDNFVVFGD-VYRRDQIDSTH----FPVFHQADGVHLLN 188 (320)
Q Consensus 152 ~~~-------~~~~l~~Gd-VYRRDeID~tH----yPvFHQmEG~~v~~ 188 (320)
++. +-++.-.|. +||++.=-.+| .-.|+|.|+-....
T Consensus 298 ~~~~~SyrdLPlr~~e~~~~~fR~E~~g~l~GL~RvReF~~~D~h~f~~ 346 (613)
T PRK03991 298 KDMTISYKNLPLKMYELSTYSFRLEQRGELVGLKRLRAFTMPDMHTLCK 346 (613)
T ss_pred hCCcCchhhCChhhheecchheeCCCCCCCcCcccccceEeeeEEEEEC
Confidence 332 237777999 99999632222 34699999987753
No 108
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=25.00 E-value=88 Score=32.30 Aligned_cols=55 Identities=18% Similarity=0.193 Sum_probs=45.1
Q ss_pred cccccccCchhhHHHHHcC------CCeEEEecccccCCCcCCCCCCcceeeeEEEEeecc
Q psy7414 136 EYLLRAHTTAHQSELIRMG------LDNFVVFGDVYRRDQIDSTHFPVFHQADGVHLLNRD 190 (320)
Q Consensus 136 ~~lLRTHTSAhq~~~l~~~------~~~~l~~GdVYRRDeID~tHyPvFHQmEG~~v~~~~ 190 (320)
..-||.=-||--+|++.++ +.++...|.|||.+.-=+=-|-+|||+.-=.+.+.+
T Consensus 76 ~laLRpe~Tapv~R~~~en~~~~~~p~k~yy~g~vfRyErPQ~GR~RqF~Q~g~E~iG~~~ 136 (429)
T COG0124 76 SLALRPELTAPVARAVAENKLDLPKPLKLYYFGPVFRYERPQKGRYRQFYQFGVEVIGSDS 136 (429)
T ss_pred EEEecccCcHHHHHHHHhccccccCCeeEEEecceecCCCCCCCCceeeEEcCeEEeCCCC
Confidence 4689999999999988643 238999999999999888899999999766665433
No 109
>KOG0326|consensus
Probab=23.22 E-value=73 Score=32.49 Aligned_cols=40 Identities=25% Similarity=0.354 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCccEEEeccCCCCCCCc
Q psy7414 253 DATKVMEQKLKNSLVKLAKILFGDDIQMRWISEYFPFTHPS 293 (320)
Q Consensus 253 ~~~~~v~~~LK~tLe~lv~~lFg~~~~~Rw~~ayFPFTePS 293 (320)
|+-|++..+...+++.++..| -++-++-...|.||.|--+
T Consensus 235 EADKlLs~~F~~~~e~li~~l-P~~rQillySATFP~tVk~ 274 (459)
T KOG0326|consen 235 EADKLLSVDFQPIVEKLISFL-PKERQILLYSATFPLTVKG 274 (459)
T ss_pred hhhhhhchhhhhHHHHHHHhC-CccceeeEEecccchhHHH
Confidence 677899999999999999876 5567888889999988544
No 110
>PRK00476 aspS aspartyl-tRNA synthetase; Validated
Probab=21.17 E-value=66 Score=34.38 Aligned_cols=16 Identities=44% Similarity=0.816 Sum_probs=14.1
Q ss_pred EEEeccCCCCCCCceE
Q psy7414 280 MRWISEYFPFTHPSWE 295 (320)
Q Consensus 280 ~Rw~~ayFPFTePS~E 295 (320)
=||..+..|||.|..|
T Consensus 442 ~~~~~~HhpFT~p~~~ 457 (588)
T PRK00476 442 GRWVAAHHPFTMPKDE 457 (588)
T ss_pred CeeeeecCCCCCcCcc
Confidence 5899999999999765
Done!