Query psy7414
Match_columns 320
No_of_seqs 183 out of 1239
Neff 4.8
Searched_HMMs 29240
Date Fri Aug 16 17:42:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7414.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7414hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cmq_A Phenylalanyl-tRNA synth 100.0 2.8E-67 9.5E-72 518.5 19.0 253 35-319 12-264 (415)
2 3pco_A Phenylalanyl-tRNA synth 100.0 6.2E-54 2.1E-58 412.5 12.1 185 59-320 95-282 (327)
3 3l4g_A Phenylalanyl-tRNA synth 100.0 1.7E-48 5.9E-53 392.8 17.1 189 55-320 209-445 (508)
4 1b7y_A Phers, protein (phenyla 100.0 1.7E-47 5.7E-52 370.6 16.7 185 59-319 89-292 (350)
5 2rhq_A Phenylalanyl-tRNA synth 100.0 2.5E-40 8.4E-45 312.1 17.1 193 49-320 34-242 (294)
6 2du7_A O-phosphoseryl-tRNA syn 100.0 4.6E-33 1.6E-37 282.4 8.8 187 48-319 28-319 (549)
7 2odr_B Phosphoseryl-tRNA synth 100.0 5.1E-33 1.8E-37 285.0 8.8 188 47-319 35-326 (648)
8 2odr_A Phosphoseryl-tRNA synth 100.0 1.4E-32 4.8E-37 282.1 8.9 175 60-319 54-326 (665)
9 2odr_D Phosphoseryl-tRNA synth 100.0 1.7E-32 5.9E-37 281.9 9.3 175 60-319 54-326 (685)
10 2odr_C Phosphoseryl-tRNA synth 100.0 2.2E-32 7.5E-37 281.7 8.9 175 60-319 54-326 (701)
11 2du3_A O-phosphoseryl-tRNA syn 99.9 4.3E-29 1.5E-33 253.0 5.0 181 54-320 112-316 (534)
12 3dsq_A Pyrrolysyl-tRNA synthet 99.8 1.6E-20 5.4E-25 176.9 10.2 165 66-318 66-240 (288)
13 3qtc_A Pyrrolysyl-tRNA synthet 99.8 9.4E-18 3.2E-22 157.0 14.8 167 65-318 71-243 (290)
14 2rhq_B Phenylalanyl-tRNA synth 99.7 2.5E-17 8.5E-22 173.7 15.0 188 49-319 473-673 (795)
15 1nnh_A Asparaginyl-tRNA synthe 99.6 6.6E-15 2.2E-19 138.8 16.1 94 75-187 20-123 (294)
16 3l4g_B Phenylalanyl-tRNA synth 99.6 3.8E-15 1.3E-19 152.3 13.2 183 49-319 373-570 (589)
17 1b7y_B Phers, protein (phenyla 99.5 5.1E-14 1.8E-18 148.5 13.2 163 69-319 487-661 (785)
18 3ig2_A Phenylalanyl-tRNA synth 99.0 1.3E-09 4.3E-14 97.9 9.8 170 74-319 7-194 (213)
19 1x54_A Asparaginyl-tRNA synthe 98.9 3.3E-09 1.1E-13 105.1 10.1 94 73-187 138-233 (434)
20 1wyd_A Hypothetical aspartyl-t 98.8 2.6E-08 8.9E-13 98.6 10.3 93 74-187 138-232 (429)
21 3ica_A Phenylalanyl-tRNA synth 98.7 6.2E-08 2.1E-12 86.8 9.9 171 73-319 6-194 (213)
22 1n9w_A Aspartyl-tRNA synthetas 98.4 3.4E-07 1.2E-11 90.4 8.0 92 75-187 130-223 (422)
23 3a5y_A GENX, putative lysyl-tR 97.8 7.3E-05 2.5E-09 72.1 10.7 57 123-187 83-141 (345)
24 3a74_A Lysyl-tRNA synthetase; 97.7 0.0002 6.7E-09 72.2 11.7 54 132-187 219-274 (493)
25 1e1o_A Lysyl-tRNA synthetase, 97.6 0.00038 1.3E-08 70.3 11.8 56 132-187 228-283 (504)
26 3bju_A Lysyl-tRNA synthetase; 97.4 0.00086 3E-08 67.9 11.2 56 132-187 221-276 (521)
27 4ex5_A Lysine--tRNA ligase; st 97.4 0.0011 3.9E-08 67.3 11.8 56 132-187 249-304 (529)
28 2du3_A O-phosphoseryl-tRNA syn 97.2 3.8E-05 1.3E-09 78.2 -0.9 66 49-134 31-98 (534)
29 3nem_A Aspartyl-tRNA synthetas 97.1 0.0022 7.4E-08 63.7 10.8 54 132-187 180-236 (438)
30 1l0w_A Aspartyl-tRNA synthetas 97.0 0.0046 1.6E-07 63.4 12.0 45 143-187 198-244 (580)
31 1c0a_A Aspartyl tRNA synthetas 96.9 0.005 1.7E-07 63.1 11.6 45 143-187 192-238 (585)
32 2xgt_A Asparaginyl-tRNA synthe 96.8 0.0055 1.9E-07 60.6 10.7 35 153-187 195-230 (435)
33 2dq3_A Seryl-tRNA synthetase; 96.7 0.019 6.6E-07 56.5 13.8 105 73-187 171-290 (425)
34 1eov_A ASPRS, aspartyl-tRNA sy 96.7 0.011 3.9E-07 59.2 12.3 55 133-187 222-277 (487)
35 4ah6_A Aspartate--tRNA ligase, 96.5 0.018 6E-07 59.7 12.0 45 143-187 202-248 (617)
36 3m4p_A Ehasnrs, asparaginyl-tR 96.4 0.01 3.6E-07 59.1 9.2 34 154-187 220-254 (456)
37 3i7f_A Aspartyl-tRNA synthetas 96.2 0.03 1E-06 57.2 11.6 52 134-187 289-343 (548)
38 3pco_B Phenylalanyl-tRNA synth 95.8 0.0072 2.5E-07 64.1 5.3 124 136-320 541-672 (795)
39 1ses_A Seryl-tRNA synthetase; 95.4 0.12 4.3E-06 50.7 12.0 105 73-187 165-284 (421)
40 2dq0_A Seryl-tRNA synthetase; 94.8 0.17 5.6E-06 50.4 10.8 108 70-187 188-311 (455)
41 1z7m_A ATP phosphoribosyltrans 94.5 0.1 3.6E-06 49.6 8.4 105 70-187 36-149 (344)
42 3ikl_A DNA polymerase subunit 93.8 2.5 8.5E-05 42.2 16.9 99 69-187 98-211 (459)
43 3vbb_A Seryl-tRNA synthetase, 93.4 0.76 2.6E-05 46.7 12.5 32 156-187 292-330 (522)
44 3rac_A Histidine-tRNA ligase; 93.1 0.18 6.3E-06 48.5 7.3 101 73-188 40-156 (373)
45 1qe0_A Histidyl-tRNA synthetas 92.8 0.21 7.1E-06 47.8 7.2 104 76-189 18-135 (420)
46 1wle_A Seryl-tRNA synthetase; 92.4 2.2 7.4E-05 43.1 14.2 105 73-187 218-340 (501)
47 3net_A Histidyl-tRNA synthetas 91.5 0.21 7.2E-06 49.2 5.6 52 136-187 95-152 (465)
48 3mf2_A BLL0957 protein; aminoa 91.4 0.86 2.9E-05 44.1 9.6 113 69-188 59-202 (346)
49 1nj1_A PROR, proline-tRNA synt 91.3 1.6 5.6E-05 43.5 11.9 107 70-187 66-193 (501)
50 3od1_A ATP phosphoribosyltrans 91.1 0.27 9.3E-06 47.8 5.9 106 70-187 19-135 (400)
51 2cja_A Seryl-tRNA synthetase; 90.6 0.98 3.4E-05 45.8 9.5 113 70-187 226-380 (522)
52 3lc0_A Histidyl-tRNA synthetas 89.5 0.48 1.6E-05 46.8 6.2 52 136-187 98-155 (456)
53 1h4v_B Histidyl-tRNA synthetas 89.1 0.64 2.2E-05 44.5 6.6 53 135-187 74-133 (421)
54 3err_A Fusion protein of micro 88.8 1.9 6.4E-05 43.8 10.0 99 70-187 270-393 (536)
55 2j3l_A Prolyl-tRNA synthetase; 87.5 8.5 0.00029 38.4 13.8 107 70-187 42-164 (572)
56 3qne_A Seryl-tRNA synthetase, 87.2 3.7 0.00012 41.3 10.9 96 71-187 181-307 (485)
57 1ati_A Glycyl-tRNA synthetase; 86.0 6.8 0.00023 39.0 12.2 111 136-311 182-309 (505)
58 4e51_A Histidine--tRNA ligase; 85.5 0.45 1.5E-05 47.0 3.2 53 135-188 104-162 (467)
59 3lss_A Seryl-tRNA synthetase; 84.6 5.5 0.00019 40.1 10.6 102 71-187 204-328 (484)
60 1htt_A Histidyl-tRNA synthetas 84.4 0.95 3.3E-05 43.3 4.9 53 135-187 75-133 (423)
61 1g5h_A Mitochondrial DNA polym 83.2 12 0.00042 36.8 12.4 108 69-186 56-200 (454)
62 1wu7_A Histidyl-tRNA synthetas 78.6 4.4 0.00015 38.9 7.3 105 70-186 15-130 (434)
63 1nj8_A Proline-tRNA synthetase 77.2 41 0.0014 32.9 13.9 108 70-187 33-161 (459)
64 4hvc_A Bifunctional glutamate/ 77.0 35 0.0012 34.3 13.5 108 70-187 56-183 (519)
65 2i4l_A Proline-tRNA ligase; al 76.9 0.79 2.7E-05 44.9 1.4 107 70-187 62-184 (458)
66 4g84_A Histidine--tRNA ligase, 76.6 5.7 0.0002 38.2 7.4 51 136-186 82-137 (464)
67 1nyr_A Threonyl-tRNA synthetas 76.1 3 0.0001 42.6 5.5 105 70-190 266-393 (645)
68 1hc7_A Prolyl-tRNA synthetase; 74.2 68 0.0023 31.6 14.6 109 70-187 39-165 (477)
69 1evl_A Threonyl-tRNA synthetas 73.8 4.7 0.00016 38.4 5.9 102 70-187 25-147 (401)
70 4g85_A Histidine-tRNA ligase, 73.1 7.1 0.00024 38.6 7.2 51 136-186 135-190 (517)
71 3a32_A Probable threonyl-tRNA 69.6 7.4 0.00025 38.2 6.4 106 74-189 49-171 (471)
72 3uh0_A Threonyl-tRNA synthetas 61.0 16 0.00054 36.0 6.9 111 70-189 59-187 (460)
73 2zt5_A Glycyl-tRNA synthetase; 59.4 89 0.0031 32.4 12.5 55 136-191 239-305 (693)
74 3ial_A Prolyl-tRNA synthetase; 49.3 1.4E+02 0.0047 30.0 11.6 107 70-186 50-176 (518)
75 1qf6_A THRRS, threonyl-tRNA sy 46.6 20 0.00067 36.8 5.0 104 70-189 266-390 (642)
76 2du7_A O-phosphoseryl-tRNA syn 40.7 1 3.5E-05 46.0 -5.5 52 56-120 124-175 (549)
77 1usy_A ATP phosphoribosyltrans 31.0 39 0.0013 30.6 3.9 51 136-190 47-101 (275)
78 4ah6_A Aspartate--tRNA ligase, 29.6 25 0.00087 36.3 2.6 31 280-312 456-502 (617)
No 1
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A
Probab=100.00 E-value=2.8e-67 Score=518.47 Aligned_cols=253 Identities=48% Similarity=0.918 Sum_probs=227.0
Q ss_pred CceEEECCeeecCCCCCCCChhhhccCCCCCCCCCCChHHHHHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccc
Q psy7414 35 KATLTINGKTYHTDDYTNVTPKILSYLNKNLHNKKYHPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFD 114 (320)
Q Consensus 35 ~~~i~~~g~~y~~d~~tNvt~~Ils~~gr~l~~~~~HPl~il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD 114 (320)
+.+++++|++|++|+|+|||++|++++||+++.|+.|||++++++|+++|.+++.++.|+|+|+++++++||||.++|||
T Consensus 12 ~~~~~~~~~~~~~~~~~ni~~~~~~~~~~~~~~g~~hPl~~~~~~i~~~f~~~~~~~~g~~Gf~e~~~~~~v~s~~~NFd 91 (415)
T 3cmq_A 12 GSVVELLGKSYPQDDHSNLTRKVLTRVGRNLHNQQHHPLWLIKERVKEHFYKQYVGRFGTPLFSVYDNLSPVVTTWQNFD 91 (415)
T ss_dssp CSEEEETTEEEECCSSCCCCHHHHTTTTCCGGGSTTCHHHHHHHHHHHHHHHHHHHCSSSCCCEEECCCCSEEEHHHHTG
T ss_pred CCcEEECCeeeccCccccCChhhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhccccCCCCcEEEcCCCccccHHHHHH
Confidence 46799999999999999999999999999999999999999999999999887665668889999999899999999999
Q ss_pred cCCCCCCCCCCCCCccccccccccccccCchhhHHHHHcCCCeEEEecccccCCCcCCCCCCcceeeeEEEEeecccccc
Q psy7414 115 SLLVAKDHVSRSKNDCYYVNREYLLRAHTTAHQSELIRMGLDNFVVFGDVYRRDQIDSTHFPVFHQADGVHLLNRDQVSR 194 (320)
Q Consensus 115 ~L~~P~DHPsR~~~DTyYin~~~lLRTHTSAhq~~~l~~~~~~~l~~GdVYRRDeID~tHyPvFHQmEG~~v~~~~~l~~ 194 (320)
+|++|+|||||+++||||||+.+||||||||||+++|+++.+++|++|||||||+||++|||+|||+||+++|..+..+.
T Consensus 92 ~L~~p~dHpaR~~~Dtfyi~~~~vLRThts~~~~~~l~~~~~k~~~~G~VyR~D~~da~h~n~fhQ~egv~lfe~g~~f~ 171 (415)
T 3cmq_A 92 SLLIPADHPSRKKGDNYYLNRTHMLRAHTSAHQWDLLHAGLDAFLVVGDVYRRDQIDSQHYPIFHQLEAVRLFSKHELFA 171 (415)
T ss_dssp GGTCCTTCGGGCGGGSCBSSSSEEECSSGGGGHHHHHHTTCSEEEEEEEEECCCCCBTTBCSEEEEEEEEEEEEHHHHTT
T ss_pred HhCCCCCCCcccccceEEecCCeEEcCCCcHHHHHHHHHCCCCEEEeeeEEeccchhhhhhHHhcCCCcEEEEeccceec
Confidence 99999999999999999999999999999999999999988899999999999999999999999999999996655432
Q ss_pred CccCcccccceecccCCCchhhhhhhhccccccccCcceeeeecCCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHh
Q psy7414 195 GDIGVGTSLKIMTIFTPTSQEYFYIKKCNKISESIGQNIVIFEQGGVHTDEKQARHTLDATKVMEQKLKNSLVKLAKILF 274 (320)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~q~~h~~~~~~~v~~~LK~tLe~lv~~lF 274 (320)
..++ . .++..+..+. .++++|.+|+.+++++...|||++|+.++..+|
T Consensus 172 ~~~~-----------------~--------------~~la~~~~g~-~~~~~~~~~~~~~vd~~f~dlKg~le~ll~~lf 219 (415)
T 3cmq_A 172 GIKD-----------------G--------------ESLQLFEQSS-RSAHKQETHTMEAVKLVEFDLKQTLTRLMAHLF 219 (415)
T ss_dssp TSTT-----------------G--------------GGCCSBCCCC-CCSSCCTTBCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccc-----------------c--------------ceEEEEEecC-cccccccccccccccccHHHHHHHHHHHHHHHc
Confidence 1100 0 1122122111 346789999999999999999999999999999
Q ss_pred CCCccEEEeccCCCCCCCceEEEeeeCCceEEEeecccccccccC
Q psy7414 275 GDDIQMRWISEYFPFTHPSWELEILLNDKWVEILGCGVIRHEILD 319 (320)
Q Consensus 275 g~~~~~Rw~~ayFPFTePS~EleV~~~g~WLEvLGCGvv~~~vL~ 319 (320)
|.+.++||+++|||||+||.|++|+++|+|||++|||++||+||+
T Consensus 220 g~~~~~~~~~~~~p~~hPgr~a~I~~~g~wlE~lG~G~lhP~Vl~ 264 (415)
T 3cmq_A 220 GDELEIRWVDCYFPFTHPSFEMEINFHGEWLEVLGCGVMEQQLVN 264 (415)
T ss_dssp CTTCCEEEEEEEETTEEEEEEEEEEETTEEEEEEEEEEECHHHHH
T ss_pred CCCceEEEecCCCCCCCCceEEEEEECCeeEEEEEEEEeCHHHHH
Confidence 987789999999999999999999999999999999999999986
No 2
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=100.00 E-value=6.2e-54 Score=412.53 Aligned_cols=185 Identities=34% Similarity=0.642 Sum_probs=170.2
Q ss_pred ccCCCCCCCCCCChHHHHHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccccCCCCCCCCCCCCCcccccccccc
Q psy7414 59 SYLNKNLHNKKYHPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSKNDCYYVNREYL 138 (320)
Q Consensus 59 s~~gr~l~~~~~HPl~il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~L~~P~DHPsR~~~DTyYin~~~l 138 (320)
+++|++.+.|..||+++++++|+++|.. +| |+++.+ +.|++.++|||+|++|+|||+|+++||||||+..+
T Consensus 95 TLP~~~~~~G~~hp~~~~~~~Ir~if~~-----~G---f~ev~~-~~ve~~~~nFd~Ln~p~dhpaR~~~dt~~i~e~~v 165 (327)
T 3pco_A 95 SLPGRRIENGGLHPVTRTIDRIESFFGE-----LG---FTVATG-PEIEDDYHNFDALNIPGHHPARADHDTFWFDTTRL 165 (327)
T ss_dssp TSCCCCCCCCCCCHHHHHHHHHHHHHHT-----TT---CBCCCC-CSEECTCCCCCTTTCCSSSHHHHHTTCCBSSSSCE
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHHH-----CC---CeEEEC-CCccCCHHHHHhhCCCCCChhhcccccEEeCCCce
Confidence 4688999999999999999999999974 35 999887 78899999999999999999999999999999999
Q ss_pred ccccCchhhHHHHHcCCC--eEEEecccccCCCcCCCCCCcceeeeEEEEeeccccccCccCcccccceecccCCCchhh
Q psy7414 139 LRAHTTAHQSELIRMGLD--NFVVFGDVYRRDQIDSTHFPVFHQADGVHLLNRDQVSRGDIGVGTSLKIMTIFTPTSQEY 216 (320)
Q Consensus 139 LRTHTSAhq~~~l~~~~~--~~l~~GdVYRRDeID~tHyPvFHQmEG~~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 216 (320)
||||||++|.+.|+.+.. +++.+|+|||+| .|+||+|+|||+||+++.
T Consensus 166 LRThtsp~~lr~l~~~~~pirifeiGrVyR~d-~d~th~p~fhqlegl~v~----------------------------- 215 (327)
T 3pco_A 166 LRTQTSGVQIRTMKAQQPPIRIIAPGRVYRND-YDQTHTPMFHQMEGLIVD----------------------------- 215 (327)
T ss_dssp ECSCTHHHHHHHHTTCCSSCCBCCEECCBCSC-CBTTBCSBCCEEEEEEEE-----------------------------
T ss_pred ecccCCHHHHHHHHhCCCCeeEEeeccEEecC-CCcccCCcccEEEEEEEC-----------------------------
Confidence 999999999999987643 899999999999 699999999999999984
Q ss_pred hhhhhccccccccCcceeeeecCCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHhCCCccEEEeccCCCCCCCceEE
Q psy7414 217 FYIKKCNKISESIGQNIVIFEQGGVHTDEKQARHTLDATKVMEQKLKNSLVKLAKILFGDDIQMRWISEYFPFTHPSWEL 296 (320)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~q~~h~~~~~~~v~~~LK~tLe~lv~~lFg~~~~~Rw~~ayFPFTePS~El 296 (320)
++++ | .|||++|+.|++.+||+++++||+|+||||||||+|+
T Consensus 216 --------------~~v~-f-----------------------~dLKg~Le~~l~~lfg~~~~vr~rps~fPftePs~ea 257 (327)
T 3pco_A 216 --------------TNIS-F-----------------------TNLKGTLHDFLRNFFEEDLQIRFRPSYFPFTEPSAEV 257 (327)
T ss_dssp --------------TTCC-H-----------------------HHHHHHHHHHHHHHHCSCSEEEEEEECCTTEEEEEEE
T ss_pred --------------CCCC-H-----------------------HHHHHHHHHHHHHHhCCCceEEEecCcCCCCCCcEEE
Confidence 1222 3 7999999999999999889999999999999999999
Q ss_pred Eeee-CCceEEEeecccccccccCC
Q psy7414 297 EILL-NDKWVEILGCGVIRHEILDR 320 (320)
Q Consensus 297 eV~~-~g~WLEvLGCGvv~~~vL~~ 320 (320)
+|+| +|+|+||+|||||||+||++
T Consensus 258 dI~~~~G~w~EIgg~G~VHP~Vl~~ 282 (327)
T 3pco_A 258 DVMGKNGKWLEVLGCGMVHPNVLRN 282 (327)
T ss_dssp EEECSSSCEEEEEEEEEECHHHHHT
T ss_pred EEEEeCCCeEEEEEEEEECHHHHHH
Confidence 9999 78999999999999999874
No 3
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=100.00 E-value=1.7e-48 Score=392.80 Aligned_cols=189 Identities=27% Similarity=0.438 Sum_probs=166.6
Q ss_pred hhhhccCCCCCCCCCCChHHHHHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccccCCCCCCCCCCCCCcccccc
Q psy7414 55 PKILSYLNKNLHNKKYHPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSKNDCYYVN 134 (320)
Q Consensus 55 ~~Ils~~gr~l~~~~~HPl~il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~L~~P~DHPsR~~~DTyYin 134 (320)
+..++.+|+..+.|..||+++++++|+++|.++ | |+.+...+.|++.++|||+|++|+|||||+++|||||+
T Consensus 209 ~y~~~~~g~~~~~G~lHPl~~v~~~Ir~if~~m-----G---F~Ev~t~~~ves~~~NFDaLn~P~dHPaR~~~Dtfyi~ 280 (508)
T 3l4g_A 209 PYNFLAHGVLPDSGHLHPLLKVRSQFRQIFLEM-----G---FTEMPTDNFIESSFWNFDALFQPQQHPARDQHDTFFLR 280 (508)
T ss_dssp CCCSSSCCCCCCCCBCCHHHHHHHHHHHHHHHT-----T---CEECCCCCSEEEHHHHTGGGTCCSSSTTSSTTTSCBBS
T ss_pred ecccCCCCCCCCCCCCCHHHHHHHHHHHHHHHC-----c---CeEeccCCccccHHHHHHhcCCCCCCcccccCceEEEc
Confidence 444456999999999999999999999999753 5 99765558999999999999999999999999999997
Q ss_pred c---------------------------------------cccccccCchhhHHHHHc-----C--CCeEEEecccccCC
Q psy7414 135 R---------------------------------------EYLLRAHTTAHQSELIRM-----G--LDNFVVFGDVYRRD 168 (320)
Q Consensus 135 ~---------------------------------------~~lLRTHTSAhq~~~l~~-----~--~~~~l~~GdVYRRD 168 (320)
. ..+||||||++|.+.|.. + +-+++.+|+|||+|
T Consensus 281 ~P~~~~~~~e~~~~~v~~~He~g~~~s~g~~~~~~~~~~~~~vLRThtsp~~lr~l~~N~~~~~~~PiriFeiGrVFR~d 360 (508)
T 3l4g_A 281 DPAEALQLPMDYVQRVKRTHSQGGYGSQGYKYNWKLDEARKNLLRTHTTSASARALYRLAQKKPFTPVKYFSIDRVFRNE 360 (508)
T ss_dssp TTCBCSCCCHHHHHHHHHHHHTCBTTBCCCCSCCCHHHHTBEEECCCTHHHHHHHHHHHHTSSSCCCEEEEEEEEEECCS
T ss_pred CccccccccHHHHHhhhhhhhccccCCccccccccccccccccccCCChHHHHHHHHHhhhhcCCCCceEEEEccEEecC
Confidence 4 479999999999999953 1 23899999999999
Q ss_pred CcCCCCCCcceeeeEEEEeeccccccCccCcccccceecccCCCchhhhhhhhccccccccCcceeeeecCCCCCccccc
Q psy7414 169 QIDSTHFPVFHQADGVHLLNRDQVSRGDIGVGTSLKIMTIFTPTSQEYFYIKKCNKISESIGQNIVIFEQGGVHTDEKQA 248 (320)
Q Consensus 169 eID~tHyPvFHQmEG~~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~q~ 248 (320)
++|+||+|+|||+||+.+. ++++ |
T Consensus 361 ~~DatHlpeFhQlegl~~~-------------------------------------------~~v~-f------------ 384 (508)
T 3l4g_A 361 TLDATHLAEFHQIEGVVAD-------------------------------------------HGLT-L------------ 384 (508)
T ss_dssp CCCSSSCSEEEEEEEEEEE-------------------------------------------ESCC-H------------
T ss_pred CCCCCcCCeEEEEEEEEEC-------------------------------------------CCCC-H------------
Confidence 9999999999999999883 1122 3
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhCCCccEEEeccCCCCCCCceEEEeeeCC--ceEEEeecccccccccCC
Q psy7414 249 RHTLDATKVMEQKLKNSLVKLAKILFGDDIQMRWISEYFPFTHPSWELEILLND--KWVEILGCGVIRHEILDR 320 (320)
Q Consensus 249 ~h~~~~~~~v~~~LK~tLe~lv~~lFg~~~~~Rw~~ayFPFTePS~EleV~~~g--~WLEvLGCGvv~~~vL~~ 320 (320)
.|||++|+.|++.+ | ..++||+|+|||||+||+|++|+++| +|+||+|||||||+||++
T Consensus 385 -----------~dLKg~Le~~l~~l-G-~~~~rfrps~fPftePS~ev~i~~~G~~~W~EIGg~G~vhP~VL~~ 445 (508)
T 3l4g_A 385 -----------GHLMGVLREFFTKL-G-ITQLRFKPAYNPYTEPSMEVFSYHQGLKKWVEVGNSGVFRPEMLLP 445 (508)
T ss_dssp -----------HHHHHHHHHHHHTT-T-CCCCEEEECCCTTCSSEEEEEECCSTTSSCEEEEEEECCCHHHHGG
T ss_pred -----------HHHHHHHHHHHHHc-C-CcceEeeccCCCCCCCeEEEEEEECCccceEEEEeeeeEcHHHHHH
Confidence 78999999999997 7 34799999999999999999999987 799999999999999874
No 4
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A*
Probab=100.00 E-value=1.7e-47 Score=370.56 Aligned_cols=185 Identities=29% Similarity=0.554 Sum_probs=168.3
Q ss_pred ccCCCCCCCCCCChHHHHHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccccCCCCCCCCCCCCCcccccc----
Q psy7414 59 SYLNKNLHNKKYHPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSKNDCYYVN---- 134 (320)
Q Consensus 59 s~~gr~l~~~~~HPl~il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~L~~P~DHPsR~~~DTyYin---- 134 (320)
+++++.+..+..||++.++++|+++|.. +| |.++.+ |.+++.++|||+|++|+|||||+++|||||+
T Consensus 89 tlP~~~~~~g~~hp~~~~~~~Ir~~f~~-----~G---f~Ev~~-p~v~~~~~nfd~L~~p~~hpar~~~dt~~l~nP~s 159 (350)
T 1b7y_A 89 SLPGASLFSGGLHPITLMERELVEIFRA-----LG---YQAVEG-PEVESEFFNFDALNIPEHHPARDMWDTFWLTGEGF 159 (350)
T ss_dssp TSCCCCCCCCBCCHHHHHHHHHHHHHHT-----TT---CEECCC-CSEEEHHHHTTTTTCCSSSTTTTSSCCCBEECSSC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHH-----CC---CEEEEC-cchhcchhHHHhhCCCCCCccccccccEEEcCccc
Confidence 3578889999999999999999999975 35 999984 8888999999999999999999999999997
Q ss_pred -----------ccccccccCchhhHHHHHcCC--CeEEEecccccCCCcCCCCCCcceeeeEEEEeeccccccCccCccc
Q psy7414 135 -----------REYLLRAHTTAHQSELIRMGL--DNFVVFGDVYRRDQIDSTHFPVFHQADGVHLLNRDQVSRGDIGVGT 201 (320)
Q Consensus 135 -----------~~~lLRTHTSAhq~~~l~~~~--~~~l~~GdVYRRDeID~tHyPvFHQmEG~~v~~~~~l~~~~~~~~~ 201 (320)
+..+||||||++|.++|..+. -+++.+|+|||+|++|++|.|+|||+||+++..
T Consensus 160 ~~~~~~~~~~~~~~vLRt~tsp~llr~l~~~~~piriFEiGrVFR~d~~d~tH~pEF~qlegl~~g~------------- 226 (350)
T 1b7y_A 160 RLEGPLGEEVEGRLLLRTHTSPMQVRYMVAHTPPFRIVVPGRVFRFEQTDATHEAVFHQLEGLVVGE------------- 226 (350)
T ss_dssp CCBCTTSCBCCSCEEECSSSTHHHHHHHHHCCSSEEEEEEEEEECCCCCCSSCCSEEEEEEEEEEET-------------
T ss_pred cccccccccccccceeeccchHHHHHHHHhcCCCeeEEEeeeEEECCCCCCCCCChhHEEEEEEECC-------------
Confidence 667999999999999998653 389999999999999999999999999999951
Q ss_pred ccceecccCCCchhhhhhhhccccccccCcceeeeecCCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHhCCCccEE
Q psy7414 202 SLKIMTIFTPTSQEYFYIKKCNKISESIGQNIVIFEQGGVHTDEKQARHTLDATKVMEQKLKNSLVKLAKILFGDDIQMR 281 (320)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~q~~h~~~~~~~v~~~LK~tLe~lv~~lFg~~~~~R 281 (320)
+++ | .|||++|+.|++.+||.+.++|
T Consensus 227 ------------------------------~v~-f-----------------------~dLKg~le~ll~~lfG~~~~~r 252 (350)
T 1b7y_A 227 ------------------------------GIA-M-----------------------AHLKGAIYELAQALFGPDSKVR 252 (350)
T ss_dssp ------------------------------TCC-H-----------------------HHHHHHHHHHHHHHSCSSCCEE
T ss_pred ------------------------------CCC-H-----------------------HHHHHHHHHHHHhhcCCCceEE
Confidence 122 2 7899999999999999878899
Q ss_pred EeccCCCCCCCceEEEeee--CCceEEEeecccccccccC
Q psy7414 282 WISEYFPFTHPSWELEILL--NDKWVEILGCGVIRHEILD 319 (320)
Q Consensus 282 w~~ayFPFTePS~EleV~~--~g~WLEvLGCGvv~~~vL~ 319 (320)
|+++|||||+||.|++|+| +|+|+||+|||+|||+||+
T Consensus 253 ~rps~fPft~Ps~e~~i~~~~~g~w~eIg~~G~VhP~Vl~ 292 (350)
T 1b7y_A 253 FQPVYFPFVEPGAQFAVWWPEGGKWLELGGAGMVHPKVFQ 292 (350)
T ss_dssp EEECCBTTEEEEEEEEEEETTTTEEEEEEEEEEECHHHHH
T ss_pred EecCCCCCCCCccEEEEEEEeCCCeEEEEEEEEEeHHHHH
Confidence 9999999999999999998 8899999999999999986
No 5
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A*
Probab=100.00 E-value=2.5e-40 Score=312.08 Aligned_cols=193 Identities=31% Similarity=0.521 Sum_probs=171.9
Q ss_pred CCCCCChhhhccCCCCCCCCCCChHHHHHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccccCCCCCCCCCCCCC
Q psy7414 49 DYTNVTPKILSYLNKNLHNKKYHPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSKN 128 (320)
Q Consensus 49 ~~tNvt~~Ils~~gr~l~~~~~HPl~il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~L~~P~DHPsR~~~ 128 (320)
-+.||+.. .+++.+..+..||++.++++|+++|.+ .| |..+ ..|.+++..+|||+|++|++||+|+++
T Consensus 34 gyd~i~~t---lp~~~~~~g~~~~~~~~~~~iR~~l~~-----~G---f~Ev-~~s~l~~~~~nf~~l~~~~~~par~~~ 101 (294)
T 2rhq_A 34 AEETIDVT---LPSRQISIGSKHPLTRTVEEIEDLFLG-----LG---YEIV-DGYEVEQDYYNFEALNLPKSHPARDMQ 101 (294)
T ss_dssp TTTCCCTT---SCCCCCCCCCCCHHHHHHHHHHHHHHT-----TT---CEEC-CCCSEEEHHHHTGGGTCCTTCGGGCTT
T ss_pred CcccCCcc---CCCcccCCCCCCHHHHHHHHHHHHHHH-----CC---CEEE-cCcceeeehhhHHhhCCCCCccccccC
Confidence 46688755 456778889999999999999999975 35 9998 458888889999999999999999999
Q ss_pred ccccccccccccccCchhhHHHHHcC----CCeEEEecccccCCCcCCCCCCcceeeeEEEEeeccccccCccCcccccc
Q psy7414 129 DCYYVNREYLLRAHTTAHQSELIRMG----LDNFVVFGDVYRRDQIDSTHFPVFHQADGVHLLNRDQVSRGDIGVGTSLK 204 (320)
Q Consensus 129 DTyYin~~~lLRTHTSAhq~~~l~~~----~~~~l~~GdVYRRDeID~tHyPvFHQmEG~~v~~~~~l~~~~~~~~~~~~ 204 (320)
||+||++..+|||||++.+.++++.+ ..+++-+|+|||+|++|++|+|+|||+||+++.. +
T Consensus 102 d~~~l~e~~vLRtsl~p~ll~~l~~N~~~~~~riFEiG~Vfr~d~~d~~h~~Ef~~Le~~~~g~---------~------ 166 (294)
T 2rhq_A 102 DSFYITDEILMRTHTSPVQARTMEKRNGQGPVKIICPGKVYRRDSDDATHSHQFTQIEGLVVDK---------N------ 166 (294)
T ss_dssp TSCBSSSSEEECSSSHHHHHHHHHHTTTCSCEEEEEEEEEECCCCCBTTBCSEEEEEEEEEEES---------S------
T ss_pred CcEEEcCcceeeccCHHHHHHHHHhcCCCCCccEEEEcCEEecCCCCCCCCChhhEEEEEEECC---------C------
Confidence 99999999999999999999999876 3489999999999999999999999999999951 1
Q ss_pred eecccCCCchhhhhhhhccccccccCcceeeeecCCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHhCCCccEEEec
Q psy7414 205 IMTIFTPTSQEYFYIKKCNKISESIGQNIVIFEQGGVHTDEKQARHTLDATKVMEQKLKNSLVKLAKILFGDDIQMRWIS 284 (320)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~q~~h~~~~~~~v~~~LK~tLe~lv~~lFg~~~~~Rw~~ 284 (320)
+. | .+||+.|+.|+..+||.+.++||++
T Consensus 167 ----------------------------~d-f-----------------------~dlKg~le~ll~~l~g~~~~~~~~~ 194 (294)
T 2rhq_A 167 ----------------------------IK-M-----------------------SDLKGTLELVAKKLFGADREIRLRP 194 (294)
T ss_dssp ----------------------------CC-H-----------------------HHHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred ----------------------------CC-H-----------------------HHHHHHHHHHHHHHhCCCcEEEEec
Confidence 11 2 6899999999999999777899999
Q ss_pred cCCCCCCCceEEEeee---CC---------ceEEEeecccccccccCC
Q psy7414 285 EYFPFTHPSWELEILL---ND---------KWVEILGCGVIRHEILDR 320 (320)
Q Consensus 285 ayFPFTePS~EleV~~---~g---------~WLEvLGCGvv~~~vL~~ 320 (320)
+|||||+||+|++|++ +| +|+||+|||+|||+||++
T Consensus 195 ~~~p~~hPg~~a~i~~~~~~g~~~~~~~~~~w~eiG~~G~vhP~Vl~~ 242 (294)
T 2rhq_A 195 SYFPFTEPSVEVDVSCFKCKGKGCNVCKHTGWIEILGAGMVHPNVLEM 242 (294)
T ss_dssp CCBTTEEEEEEEEEECSSSTTSCCTTTTTSSEEEEEEEEEECHHHHHT
T ss_pred CcCCCCCCcEEEEEEEEccCCcccccccCCCCeEEEEEeeECHHHHHH
Confidence 9999999999999998 66 799999999999999864
No 6
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
Probab=99.97 E-value=4.6e-33 Score=282.43 Aligned_cols=187 Identities=20% Similarity=0.279 Sum_probs=156.8
Q ss_pred CCCCCCChhh----h--ccCCCCCCCCCCChHHHHHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccccCCCCCC
Q psy7414 48 DDYTNVTPKI----L--SYLNKNLHNKKYHPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKD 121 (320)
Q Consensus 48 d~~tNvt~~I----l--s~~gr~l~~~~~HPl~il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~L~~P~D 121 (320)
..|.+.+..+ + +.+++..+.|..||+..++++|+++|.+ +| |+++.+ +.|++.++| +|++
T Consensus 28 ~~w~~~~~~~~~~~~d~~~P~~~~~~G~~HPl~~~~~~ir~~f~~-----mG---F~e~~~-p~ies~~~n-----~pq~ 93 (549)
T 2du7_A 28 TAWRETRALIKDKHIDNKYPRLKPVYGKPHPVMETIERLRQAYLR-----MG---FEEMIN-PVIVDEMEI-----YKQF 93 (549)
T ss_dssp STTTSCCCSSCCCTTTTSSSSSCCCCCCCCHHHHHHHHHHHHHHT-----TT---CEECCC-CSCEEHHHH-----HHHT
T ss_pred HHHHhhhhhhhccCcCCCCCCCCCCCCCcCHHHHHHHHHHHHHHH-----CC---CEEeeC-CeEeehHHh-----CCCc
Confidence 6787773222 2 3455667899999999999999999975 35 999986 777899999 6999
Q ss_pred -CCCCCCCc-cccccc----------------------------------------------------------------
Q psy7414 122 -HVSRSKND-CYYVNR---------------------------------------------------------------- 135 (320)
Q Consensus 122 -HPsR~~~D-TyYin~---------------------------------------------------------------- 135 (320)
||||+++| ||||+.
T Consensus 94 ghpAr~~~D~tfyl~~p~~~~~g~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~v~~~~~~~~s~g~ 173 (549)
T 2du7_A 94 GPEAMAVLDRCFYLAGLPRPDVGLGNEKVEIIKNLGIDIDEEKKERLREVLHLYKKGAIDGDDLVFEIAKALNVSNEMGL 173 (549)
T ss_dssp CTTHHHHGGGCCEEECCCCCCCSSSSTTSCCSSCSCCCCSCCCSSSCCCSCCCSSSSCCCSSSCCSCCCSSSSCCSCSCC
T ss_pred CCCcccccCceEEECCCCCcccccchhhhhhhhhcccccccchhhhhhhhhhhhccCCCchhhhhhHhhhhhhccccccc
Confidence 99999999 999982
Q ss_pred ------------------cccccccCch---hhHHHHHc-C-C-CeEEEecccccCCCc-CCCCCCcceeeeEEEEeecc
Q psy7414 136 ------------------EYLLRAHTTA---HQSELIRM-G-L-DNFVVFGDVYRRDQI-DSTHFPVFHQADGVHLLNRD 190 (320)
Q Consensus 136 ------------------~~lLRTHTSA---hq~~~l~~-~-~-~~~l~~GdVYRRDeI-D~tHyPvFHQmEG~~v~~~~ 190 (320)
..+|||||++ .|++.+.+ + . -+++.+|+|||+|++ |++|+++|||++|+.+..
T Consensus 174 ~~~d~~~~e~~~~~~~~e~svLRTsLlPGLL~~vr~N~~r~~~pvrlFEiGrVFr~D~~~d~th~~ef~qLaglv~G~-- 251 (549)
T 2du7_A 174 KVLETAFPEFKDLKPESTTLTLRSHMTSGWFITLSSLIKKRKLPLKLFSIDRCFRREQREDRSHLMSYHSASCVVVGE-- 251 (549)
T ss_dssp CSSSSSCTTSSSCCCCEEEEECCSTTHHHHHHHHHTTTTTSCSSEEEEEEEEECCCCSSCSSSCCSCEEEEEEEEECT--
T ss_pred ccccccchhhccccccccccccccccchhHHHHHHHHHhcCCCCeEEEEEeeEEecCCcccCcCCCcceEEEEEEECC--
Confidence 3589999999 88888843 2 2 389999999999998 999999999999999941
Q ss_pred ccccCccCcccccceecccCCCchhhhhhhhccccccccCcceeeeecCCCCCcccccccchhHHHHHHHHHHHHHHHHH
Q psy7414 191 QVSRGDIGVGTSLKIMTIFTPTSQEYFYIKKCNKISESIGQNIVIFEQGGVHTDEKQARHTLDATKVMEQKLKNSLVKLA 270 (320)
Q Consensus 191 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~q~~h~~~~~~~v~~~LK~tLe~lv 270 (320)
+++ | .|||++|+.|+
T Consensus 252 -----------------------------------------~vd-F-----------------------~DLKG~Le~ll 266 (549)
T 2du7_A 252 -----------------------------------------DVS-V-----------------------DDGKVVAEGLL 266 (549)
T ss_dssp -----------------------------------------TCC-H-----------------------HHHHHHHHHHH
T ss_pred -----------------------------------------CCC-H-----------------------HHHHHHHHHHH
Confidence 112 3 78999999999
Q ss_pred HHHhCCCccEEEecc------CCCCCCCceEEEeeeCC--ceEEEeecccccccccC
Q psy7414 271 KILFGDDIQMRWISE------YFPFTHPSWELEILLND--KWVEILGCGVIRHEILD 319 (320)
Q Consensus 271 ~~lFg~~~~~Rw~~a------yFPFTePS~EleV~~~g--~WLEvLGCGvv~~~vL~ 319 (320)
..| |. .++||+++ |||||+ +||++.++| +|+||+|||++||+||+
T Consensus 267 ~~L-Gi-~~~rfrps~~~~p~yhPGr~--AeI~v~~~g~~gw~eIG~~GeVHP~VLk 319 (549)
T 2du7_A 267 AQF-GF-TKFKFKPDEKKSKYYTPETQ--TEVYAYHPKLGEWIEVATFGVYSPIALA 319 (549)
T ss_dssp GGG-TC-CCCCCEECTTCCTTBCTTTC--EEEEECCSSSSCSEEEEEEEEBCHHHHH
T ss_pred HHc-CC-CeEEEEECCCCCcccCCceE--EEEEEecCCCCCcEEEEEEEEECHHHHH
Confidence 987 63 36888888 999999 899998777 89999999999999985
No 7
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=99.97 E-value=5.1e-33 Score=284.98 Aligned_cols=188 Identities=20% Similarity=0.283 Sum_probs=151.7
Q ss_pred CCCCCCCChhh----h--ccCCCCCCCCCCChHHHHHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccccCCCCC
Q psy7414 47 TDDYTNVTPKI----L--SYLNKNLHNKKYHPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAK 120 (320)
Q Consensus 47 ~d~~tNvt~~I----l--s~~gr~l~~~~~HPl~il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~L~~P~ 120 (320)
.+.|.|.+..+ + +.+++..+.|+.||+..++++|+++|.++ | |+++.+ +.|++.++| +|+
T Consensus 35 ~~~W~~~~~~~~~~~id~~~P~~~~~~G~~HPl~~~~~~IR~if~~m-----G---F~E~~~-p~vese~~n-----~pq 100 (648)
T 2odr_B 35 EKAWIETKDLIKAKKINESYPRIKPVFGKTHPVNDTIENLRQAYLRM-----G---FEEYIN-PVIVDERDI-----YKQ 100 (648)
T ss_dssp ---------------CTTSGGGCCCCCCBCCHHHHHHHHHHHHHHHT-----T---CEECCC-CSEEEHHHH-----HHH
T ss_pred hHHHHhhhhhccccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC-----C---CEEeeC-CEEeehhhh-----CCC
Confidence 66888884333 2 24556678999999999999999999853 5 999986 777799999 699
Q ss_pred C-CCCCCCCc-cccccc---------------------------------------------------------------
Q psy7414 121 D-HVSRSKND-CYYVNR--------------------------------------------------------------- 135 (320)
Q Consensus 121 D-HPsR~~~D-TyYin~--------------------------------------------------------------- 135 (320)
| ||||+++| ||||+.
T Consensus 101 ~gHpAR~~~D~tFyl~~P~~~~vg~~~~~~~~i~~~g~~is~~~~~l~~~~~~yk~~~~~~~dl~~~v~~~h~~~~s~g~ 180 (648)
T 2odr_B 101 FGPEAMAVLDRCFYLAGLPRPDVGLSDEKISQIEKLGIKVSEHKESLQKILHGYKKGTLDGDDLVLEISNALEISSEMGL 180 (648)
T ss_dssp HGGGHHHHHHTCEEEEBCCC------------------------------------------------------------
T ss_pred cCCCccccCCceEEECCCCCCccccchhhhhhhhhcccccchhhhhhhhhhhhhccCCCChHHHHHHHHHHhccccccce
Confidence 9 99999999 999983
Q ss_pred ------------------cccccccCch---hhHHHHHc-C-C-CeEEEecccccCCCc-CCCCCCcceeeeEEEEeecc
Q psy7414 136 ------------------EYLLRAHTTA---HQSELIRM-G-L-DNFVVFGDVYRRDQI-DSTHFPVFHQADGVHLLNRD 190 (320)
Q Consensus 136 ------------------~~lLRTHTSA---hq~~~l~~-~-~-~~~l~~GdVYRRDeI-D~tHyPvFHQmEG~~v~~~~ 190 (320)
..+|||||++ .|++.+.+ + . -++|.+|+|||+|++ |++|+|+|||++|+.+..
T Consensus 181 ~~~~~~~~e~~~l~~~~~~sVLRTsLlPGLL~~vr~N~~R~~~pvRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~-- 258 (648)
T 2odr_B 181 KILEDVFPEFKDLTAVSSKLTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGE-- 258 (648)
T ss_dssp ---------CCCCCCBCCSEEECCCTHHHHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECT--
T ss_pred eeccccChhhhccccccccCcccccchhhHHHHHHHHHhcCCCCeEEEEEeeEEecCccccccCCCcceEEEEEEECC--
Confidence 3689999999 99999854 2 2 389999999999998 999999999999999941
Q ss_pred ccccCccCcccccceecccCCCchhhhhhhhccccccccCcceeeeecCCCCCcccccccchhHHHHHHHHHHHHHHHHH
Q psy7414 191 QVSRGDIGVGTSLKIMTIFTPTSQEYFYIKKCNKISESIGQNIVIFEQGGVHTDEKQARHTLDATKVMEQKLKNSLVKLA 270 (320)
Q Consensus 191 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~q~~h~~~~~~~v~~~LK~tLe~lv 270 (320)
+++ | .|||++|+.|+
T Consensus 259 -----------------------------------------~vd-F-----------------------~DLKGvLE~LL 273 (648)
T 2odr_B 259 -----------------------------------------GVD-I-----------------------NDGKAIAEGLL 273 (648)
T ss_dssp -----------------------------------------TCC-H-----------------------HHHHHHHHHHH
T ss_pred -----------------------------------------CCC-H-----------------------HHHHHHHHHHH
Confidence 122 3 78999999999
Q ss_pred HHHhCCCccEEEecc------CCCCCCCceEEEeeeCC--ceEEEeecccccccccC
Q psy7414 271 KILFGDDIQMRWISE------YFPFTHPSWELEILLND--KWVEILGCGVIRHEILD 319 (320)
Q Consensus 271 ~~lFg~~~~~Rw~~a------yFPFTePS~EleV~~~g--~WLEvLGCGvv~~~vL~ 319 (320)
..| |. .++||+++ |||||+ +||+|.+.| +|+||+|||++||+||+
T Consensus 274 ~~L-Gi-~~vrfrpse~~~p~yhPGre--AEI~v~~~g~~GW~EIG~~GeVHP~VLk 326 (648)
T 2odr_B 274 SQF-GF-TNFKFIPDEKKSKYYTPETQ--TEVYAYHPKLKEWLEVATFGVYSPVALS 326 (648)
T ss_dssp HTT-TC-CCEEEEECTTCCTTBCTTCC--EEEEEEETTTTEEEEEEEEEEBCHHHHH
T ss_pred HHc-CC-CeEEEEECCCCCcCcCCceE--EEEEEecCCCCCCEEEEEEeEECHHHHH
Confidence 987 63 37999888 999999 899998765 79999999999999986
No 8
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=99.97 E-value=1.4e-32 Score=282.11 Aligned_cols=175 Identities=21% Similarity=0.283 Sum_probs=151.0
Q ss_pred cCCCCCCCCCCChHHHHHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccccCCCCCC-CCCCCCCc-cccccc--
Q psy7414 60 YLNKNLHNKKYHPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKD-HVSRSKND-CYYVNR-- 135 (320)
Q Consensus 60 ~~gr~l~~~~~HPl~il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~L~~P~D-HPsR~~~D-TyYin~-- 135 (320)
.+++..+.|+.||+..++++|+++|.++ | |+++.+ +.|++.++| +|+| ||||+++| ||||+.
T Consensus 54 ~P~~~~~~G~~HPl~~~~~~IR~if~~m-----G---F~E~~~-p~vese~~n-----~pq~gHpAR~~~D~tFyL~~P~ 119 (665)
T 2odr_A 54 YPRIKPVFGKTHPVNDTIENLRQAYLRM-----G---FEEYIN-PVIVDERDI-----YKQFGPEAMAVLDRCFYLAGLP 119 (665)
T ss_dssp GGGSCCCCCBCCHHHHHHHHHHHHHHHT-----T---CEECCC-CSEEEHHHH-----HHHHGGGHHHHHHTCEEEEBCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHC-----C---CEEeeC-CEEeeehhh-----CCCcCCCccccCCcEEEECCCC
Confidence 3556678999999999999999999853 5 999986 777799999 6999 99999999 999983
Q ss_pred -------------------------------------------------------------------------------c
Q psy7414 136 -------------------------------------------------------------------------------E 136 (320)
Q Consensus 136 -------------------------------------------------------------------------------~ 136 (320)
.
T Consensus 120 ~~~vg~~~~~~~~i~~~g~~is~~~~~l~~~~~~yk~~~~~~~dl~~~v~~~h~~~~s~g~~~~~~~~~e~~~l~~~a~~ 199 (665)
T 2odr_A 120 RPDVGLSDEKISQIEKLGIKVSEHKESLQKILHGYKKGTLDGDDLVLEISNALEISSEMGLKILEDVFPEFKDLTAVSSK 199 (665)
T ss_dssp C---------------------------------------------------------------------CCCCCCBCCS
T ss_pred CCccccchhhhhhhhhcccccchhhhhhhhhhhhhccCCCChHHHHHHHHHHhccccccceeeccccChhhhccCccccc
Confidence 3
Q ss_pred ccccccCch---hhHHHHHc-C-C-CeEEEecccccCCCc-CCCCCCcceeeeEEEEeeccccccCccCcccccceeccc
Q psy7414 137 YLLRAHTTA---HQSELIRM-G-L-DNFVVFGDVYRRDQI-DSTHFPVFHQADGVHLLNRDQVSRGDIGVGTSLKIMTIF 209 (320)
Q Consensus 137 ~lLRTHTSA---hq~~~l~~-~-~-~~~l~~GdVYRRDeI-D~tHyPvFHQmEG~~v~~~~~l~~~~~~~~~~~~~~~~~ 209 (320)
.+|||||++ .|++.+.+ + . -++|.+|+|||+|++ |++|+|+|||++|+.+..
T Consensus 200 sVLRTSLlPGLL~~lr~N~~R~~~pvRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~--------------------- 258 (665)
T 2odr_A 200 LTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGE--------------------- 258 (665)
T ss_dssp EEECCCTHHHHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECT---------------------
T ss_pred CcccccchhhHHHHHHHHHhcCCCCeEEEEEeeEEecCccccccCCCcceEEEEEEECC---------------------
Confidence 689999999 99999854 2 2 389999999999998 999999999999999941
Q ss_pred CCCchhhhhhhhccccccccCcceeeeecCCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHhCCCccEEEecc----
Q psy7414 210 TPTSQEYFYIKKCNKISESIGQNIVIFEQGGVHTDEKQARHTLDATKVMEQKLKNSLVKLAKILFGDDIQMRWISE---- 285 (320)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~q~~h~~~~~~~v~~~LK~tLe~lv~~lFg~~~~~Rw~~a---- 285 (320)
+++ | .|||++|+.|+..| |. .++||+++
T Consensus 259 ----------------------~vd-F-----------------------~DLKGvLE~LL~~L-Gi-~~vrfrpse~~~ 290 (665)
T 2odr_A 259 ----------------------GVD-I-----------------------NDGKAIAEGLLSQF-GF-TNFKFIPDEKKS 290 (665)
T ss_dssp ----------------------TCC-H-----------------------HHHHHHHHHHHHTT-TC-CCEEEEECTTCC
T ss_pred ----------------------CCC-H-----------------------HHHHHHHHHHHHHc-CC-CeEEEEECCCCC
Confidence 122 3 78999999999987 63 37999888
Q ss_pred --CCCCCCCceEEEeeeCC--ceEEEeecccccccccC
Q psy7414 286 --YFPFTHPSWELEILLND--KWVEILGCGVIRHEILD 319 (320)
Q Consensus 286 --yFPFTePS~EleV~~~g--~WLEvLGCGvv~~~vL~ 319 (320)
|||||+ +||+|.+.| +|+||+|||++||+||+
T Consensus 291 p~yhPGre--AEI~V~~~g~~GW~EIG~~GeVHPeVLk 326 (665)
T 2odr_A 291 KYYTPETQ--TEVYAYHPKLKEWLEVATFGVYSPVALS 326 (665)
T ss_dssp TTBCTTCC--EEEEEEETTTTEEEEEEEEEEBCHHHHH
T ss_pred CCcCCceE--EEEEEecCCCCCCEEEEEEeEECHHHHH
Confidence 999999 899998765 79999999999999986
No 9
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=99.97 E-value=1.7e-32 Score=281.90 Aligned_cols=175 Identities=21% Similarity=0.283 Sum_probs=151.0
Q ss_pred cCCCCCCCCCCChHHHHHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccccCCCCCC-CCCCCCCc-cccccc--
Q psy7414 60 YLNKNLHNKKYHPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKD-HVSRSKND-CYYVNR-- 135 (320)
Q Consensus 60 ~~gr~l~~~~~HPl~il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~L~~P~D-HPsR~~~D-TyYin~-- 135 (320)
.+++..+.|+.||+..++++|+++|.++ | |+++.+ +.|++.++| +|+| ||||+++| ||||+.
T Consensus 54 ~P~~~~~~G~~HPl~~~~~~IReif~~m-----G---F~E~~~-p~vese~~n-----~pq~gHPAR~~~D~tFyL~~P~ 119 (685)
T 2odr_D 54 YPRIKPVFGKTHPVNDTIENLRQAYLRM-----G---FEEYIN-PVIVDERDI-----YKQFGPEAMAVLDRCFYLAGLP 119 (685)
T ss_dssp TTTCCCCCCBCCHHHHHHHHHHHHHHHT-----T---CEECCC-CSEEEHHHH-----HHHHGGGHHHHHHTCEEEEBCC
T ss_pred CCCCCCCCCCcCHHHHHHHHHHHHHHHC-----C---CEEeeC-CEEeehHHh-----CCCcCCCccccCCcEEEECCCC
Confidence 4556678999999999999999999853 5 999986 777799999 6999 99999999 999983
Q ss_pred -------------------------------------------------------------------------------c
Q psy7414 136 -------------------------------------------------------------------------------E 136 (320)
Q Consensus 136 -------------------------------------------------------------------------------~ 136 (320)
.
T Consensus 120 ~~~vg~~~~~~~~i~~~g~~is~~~~~l~~~~h~yk~~~~~~~dl~~~v~~~h~~~~s~g~~~~~~~~~ef~~l~~~a~~ 199 (685)
T 2odr_D 120 RPDVGLSDEKISQIEKLGIKVSEHKESLQKILHGYKKGTLDGDDLVLEISNALEISSEMGLKILEDVFPEFKDLTAVSSK 199 (685)
T ss_dssp C---------------------------------------------------------------------CCCCCCBCCS
T ss_pred CCccccchhhhhhhhhcccccchhhhhhhhhhhhhccCCCChHHHHHHHHHHhccccccceeeccccChhhhccCccccc
Confidence 3
Q ss_pred ccccccCch---hhHHHHHc-C-C-CeEEEecccccCCCc-CCCCCCcceeeeEEEEeeccccccCccCcccccceeccc
Q psy7414 137 YLLRAHTTA---HQSELIRM-G-L-DNFVVFGDVYRRDQI-DSTHFPVFHQADGVHLLNRDQVSRGDIGVGTSLKIMTIF 209 (320)
Q Consensus 137 ~lLRTHTSA---hq~~~l~~-~-~-~~~l~~GdVYRRDeI-D~tHyPvFHQmEG~~v~~~~~l~~~~~~~~~~~~~~~~~ 209 (320)
.+|||||++ .|++.+.+ + . -++|.+|+|||+|++ |++|+|+|||++|+.+..
T Consensus 200 sVLRTSLlPGLL~~vr~N~~R~~~pvRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~--------------------- 258 (685)
T 2odr_D 200 LTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGE--------------------- 258 (685)
T ss_dssp EEECCCTHHHHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECT---------------------
T ss_pred CcccccchhhHHHHHHHHHhCCCCCeEEEEeccEEecCccccccCCCcceEEEEEEECC---------------------
Confidence 689999999 99999854 2 2 389999999999998 999999999999999941
Q ss_pred CCCchhhhhhhhccccccccCcceeeeecCCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHhCCCccEEEecc----
Q psy7414 210 TPTSQEYFYIKKCNKISESIGQNIVIFEQGGVHTDEKQARHTLDATKVMEQKLKNSLVKLAKILFGDDIQMRWISE---- 285 (320)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~q~~h~~~~~~~v~~~LK~tLe~lv~~lFg~~~~~Rw~~a---- 285 (320)
+++ | .|||++|+.|+..| |. .++||+++
T Consensus 259 ----------------------~vD-F-----------------------~DLKGvLE~LL~~L-Gi-~~vrfrpse~~~ 290 (685)
T 2odr_D 259 ----------------------GVD-I-----------------------NDGKAIAEGLLSQF-GF-TNFKFIPDEKKS 290 (685)
T ss_dssp ----------------------TCC-H-----------------------HHHHHHHHHHHHTT-TC-CCEEEEECTTCC
T ss_pred ----------------------CCC-H-----------------------HHHHHHHHHHHHHc-CC-CeEEEEECCCCC
Confidence 122 3 78999999999987 63 37999888
Q ss_pred --CCCCCCCceEEEeeeCC--ceEEEeecccccccccC
Q psy7414 286 --YFPFTHPSWELEILLND--KWVEILGCGVIRHEILD 319 (320)
Q Consensus 286 --yFPFTePS~EleV~~~g--~WLEvLGCGvv~~~vL~ 319 (320)
|||||+ +||+|.++| +|+||+|||++||+||+
T Consensus 291 p~yHPGre--AEI~V~~~g~~GW~EIG~~GeVHPeVLk 326 (685)
T 2odr_D 291 KYYTPETQ--TEVYAYHPKLKEWLEVATFGVYSPVALS 326 (685)
T ss_dssp TTBCTTCC--EEEEEEETTTTEEEEEEEEEEBCHHHHH
T ss_pred CCcCCceE--EEEEEecCCCCCCEEEEEEeEECHHHHH
Confidence 999999 899998765 79999999999999986
No 10
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}
Probab=99.97 E-value=2.2e-32 Score=281.68 Aligned_cols=175 Identities=21% Similarity=0.283 Sum_probs=150.9
Q ss_pred cCCCCCCCCCCChHHHHHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccccCCCCCC-CCCCCCCc-cccccc--
Q psy7414 60 YLNKNLHNKKYHPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKD-HVSRSKND-CYYVNR-- 135 (320)
Q Consensus 60 ~~gr~l~~~~~HPl~il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~L~~P~D-HPsR~~~D-TyYin~-- 135 (320)
.+++..+.|+.||+..++++|+++|.++ | |+++.+ +.|++.++| +|+| ||||+++| ||||+.
T Consensus 54 ~P~~~~~~G~~HPl~~~~~~IReif~~m-----G---F~Ev~~-p~Vese~~n-----~pq~gHPAR~~~D~tFYL~~P~ 119 (701)
T 2odr_C 54 YPRIKPVFGKTHPVNDTIENLRQAYLRM-----G---FEEYIN-PVIVDERDI-----YKQFGPEAMAVLDRCFYLAGLP 119 (701)
T ss_dssp STTCCCCCCBCCHHHHHHHHHHHHHHHT-----T---CEECCC-CSEEEHHHH-----HHHHGGGHHHHHHTCEEEEECC
T ss_pred CCCCCCCCCCcCHHHHHHHHHHHHHHHC-----C---CEEeeC-CEEeeehhh-----CCCcCCCccccCCcEEEECCCC
Confidence 3556678999999999999999999853 5 999986 777799999 6999 99999999 999982
Q ss_pred -------------------------------------------------------------------------------c
Q psy7414 136 -------------------------------------------------------------------------------E 136 (320)
Q Consensus 136 -------------------------------------------------------------------------------~ 136 (320)
.
T Consensus 120 ~~~vg~~~~~~~~i~~~g~~is~~~~~l~~~~h~yk~~~~~~~dlv~~v~~~h~~~~s~g~~~~~~~~~ef~~l~~~a~~ 199 (701)
T 2odr_C 120 RPDVGLSDEKISQIEKLGIKVSEHKESLQKILHGYKKGTLDGDDLVLEISNALEISSEMGLKILEDVFPEFKDLTAVSSK 199 (701)
T ss_dssp C---------------------------------------------------------------------CCCCCCEEEE
T ss_pred CCccccchhhhhhhhhcccccchhhhhhhhhhhhhccCCCChHHHHHHHHHHhccccccceeeccccChhhhccCccccc
Confidence 3
Q ss_pred ccccccCch---hhHHHHHc-C-C-CeEEEecccccCCCc-CCCCCCcceeeeEEEEeeccccccCccCcccccceeccc
Q psy7414 137 YLLRAHTTA---HQSELIRM-G-L-DNFVVFGDVYRRDQI-DSTHFPVFHQADGVHLLNRDQVSRGDIGVGTSLKIMTIF 209 (320)
Q Consensus 137 ~lLRTHTSA---hq~~~l~~-~-~-~~~l~~GdVYRRDeI-D~tHyPvFHQmEG~~v~~~~~l~~~~~~~~~~~~~~~~~ 209 (320)
.+|||||++ .|++.+.+ + . -++|.+|+|||+|++ |++|+|+|||++|+.+..
T Consensus 200 sVLRTSLlPGLL~~vr~N~~R~~~pvRLFEIGrVFR~D~~lDath~~EfhqLeGlv~G~--------------------- 258 (701)
T 2odr_C 200 LTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGE--------------------- 258 (701)
T ss_dssp EEECCCTHHHHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECT---------------------
T ss_pred CcccccchhhHHHHHHHHHhCCCCCeEEEEEeeEEccCccccccCCCcceEEEEEEECC---------------------
Confidence 589999999 99999854 2 2 389999999999998 999999999999999941
Q ss_pred CCCchhhhhhhhccccccccCcceeeeecCCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHhCCCccEEEecc----
Q psy7414 210 TPTSQEYFYIKKCNKISESIGQNIVIFEQGGVHTDEKQARHTLDATKVMEQKLKNSLVKLAKILFGDDIQMRWISE---- 285 (320)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~q~~h~~~~~~~v~~~LK~tLe~lv~~lFg~~~~~Rw~~a---- 285 (320)
+++ | .|||++|+.|+..| |. .++||+++
T Consensus 259 ----------------------~vD-F-----------------------~DLKGvLE~LL~~L-Gi-~~vrfrpse~~~ 290 (701)
T 2odr_C 259 ----------------------GVD-I-----------------------NDGKAIAEGLLSQF-GF-TNFKFIPDEKKS 290 (701)
T ss_dssp ----------------------TCC-H-----------------------HHHHHHHHHHHHTT-TC-CCEEEEECTTCC
T ss_pred ----------------------CCC-H-----------------------HHHHHHHHHHHHHc-CC-CeEEEEECCCCC
Confidence 122 3 78999999999987 63 37999888
Q ss_pred --CCCCCCCceEEEeeeCC--ceEEEeecccccccccC
Q psy7414 286 --YFPFTHPSWELEILLND--KWVEILGCGVIRHEILD 319 (320)
Q Consensus 286 --yFPFTePS~EleV~~~g--~WLEvLGCGvv~~~vL~ 319 (320)
|||||+ +||+|.+.| +|+||+|||++||+||+
T Consensus 291 p~yHPGre--AEI~V~~~g~~GW~EIG~~GeVHPeVLk 326 (701)
T 2odr_C 291 KYYTPETQ--TEVYAYHPKLKEWLEVATFGVYSPVALS 326 (701)
T ss_dssp TTBCTTCC--EEEEEEETTTTEEEEEEEEEEBCHHHHH
T ss_pred CCcCCceE--EEEEEecCCCCCCEEEEEEeEECHHHHH
Confidence 999999 899998765 79999999999999986
No 11
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A*
Probab=99.95 E-value=4.3e-29 Score=252.97 Aligned_cols=181 Identities=20% Similarity=0.219 Sum_probs=151.7
Q ss_pred ChhhhccCCCCCCCCCCChHHHHHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccccCCCCC-CCCCCCCCcccc
Q psy7414 54 TPKILSYLNKNLHNKKYHPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAK-DHVSRSKNDCYY 132 (320)
Q Consensus 54 t~~Ils~~gr~l~~~~~HPl~il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~L~~P~-DHPsR~~~DTyY 132 (320)
..+|++.+|++||.. ++++.|.+++.... + .-+...+|+++.+|||+++++- |+.+++.+||||
T Consensus 112 ~e~I~~~~G~~l~~~------~l~~~~~~y~~~~~------~---~~~~~~~v~~vh~~fds~~v~l~NPis~e~~~~~~ 176 (534)
T 2du3_A 112 IRQIEAITKREVDSK------PLQEIFHRYKKGEI------D---GDDLSYLIAEVLDVDDITAVKILDEVFPEFKELKP 176 (534)
T ss_dssp TTTTSCCCCSSCCCS------CTTTTTTHHHHSCC------S---GGGTTTTTTSSSCSGGGSHHHHHHTTCTTTTTCCC
T ss_pred hhhhhhhccccchhh------hhhhhhhhhhcccc------c---cccccccccchhcccccceeeecCCCChhhccccc
Confidence 367889999999988 89999999985321 1 0122368999999999999998 999999999999
Q ss_pred ccccccccccCch---hhHHHHHcC--C-CeEEEecccccCCCc-CCCCCCcceeeeEEEEeeccccccCccCcccccce
Q psy7414 133 VNREYLLRAHTTA---HQSELIRMG--L-DNFVVFGDVYRRDQI-DSTHFPVFHQADGVHLLNRDQVSRGDIGVGTSLKI 205 (320)
Q Consensus 133 in~~~lLRTHTSA---hq~~~l~~~--~-~~~l~~GdVYRRDeI-D~tHyPvFHQmEG~~v~~~~~l~~~~~~~~~~~~~ 205 (320)
+++..+||||+++ .+++...+. . -+++.+|+|||+|++ |++|+++|||++|+.+.. +
T Consensus 177 ~~~~svLRTsLlPgLL~~lr~N~~r~~~pvrLFEIG~VFr~d~~~d~th~~Ef~qLagli~G~---------~------- 240 (534)
T 2du3_A 177 ISSTLTLRSHMTTGWFITLSHIADKLPLPIKLFSIDRCFRREQGEDATRLYTYFSASCVLVDE---------E------- 240 (534)
T ss_dssp EEEEEEECSSHHHHHHHHHHTTTTTSCSSEEEEEEEEEECCCTTCSSSCCSEEEEEEEEEECS---------S-------
T ss_pred cccccccCccchhhHHHHHHHHHhCCCCCeeEEEEeeEEecCccccccccceeeEEEEEEECC---------C-------
Confidence 9999999999999 776666432 2 389999999999998 999999999999999841 1
Q ss_pred ecccCCCchhhhhhhhccccccccCcceeeeecCCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHhCCCccEEEecc
Q psy7414 206 MTIFTPTSQEYFYIKKCNKISESIGQNIVIFEQGGVHTDEKQARHTLDATKVMEQKLKNSLVKLAKILFGDDIQMRWISE 285 (320)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~q~~h~~~~~~~v~~~LK~tLe~lv~~lFg~~~~~Rw~~a 285 (320)
.. | .+||++|+.|+..| |.. ++||+++
T Consensus 241 ---------------------------vd-f-----------------------~dLKgilE~LL~~L-Gi~-~~r~~~~ 267 (534)
T 2du3_A 241 ---------------------------LS-V-----------------------DDGKAVAEALLRQF-GFE-NFRFRKD 267 (534)
T ss_dssp ---------------------------CC-H-----------------------HHHHHHHHHHHGGG-TCC-EEEEEEC
T ss_pred ---------------------------CC-H-----------------------HHHHHHHHHHHHHc-CCC-eEEEEEC
Confidence 11 2 68999999999987 632 6999988
Q ss_pred ------CCCCCCCceEEEeeeC----------CceEEEeecccccccccCC
Q psy7414 286 ------YFPFTHPSWELEILLN----------DKWVEILGCGVIRHEILDR 320 (320)
Q Consensus 286 ------yFPFTePS~EleV~~~----------g~WLEvLGCGvv~~~vL~~ 320 (320)
|||||+ +||+++|+ ++|+||+|||++||+||++
T Consensus 268 ~~~~~~yhPgt~--aeI~v~~~~~~g~~~~~~~gW~eIG~~G~vhP~VL~~ 316 (534)
T 2du3_A 268 EKRSKYYIPDTQ--TEVFAFHPKLVGSSTKYSDGWIEIATFGIYSPTALAE 316 (534)
T ss_dssp TTCCTTBCTTTC--EEEEEEEEEEETCSSSCTEEEEEEEEEEEBCHHHHHT
T ss_pred CCCcccccCCeE--EEEEEEeccccccccccCCCCEEEEEEEEECHHHHHH
Confidence 999999 99999875 4799999999999999864
No 12
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A
Probab=99.82 E-value=1.6e-20 Score=176.93 Aligned_cols=165 Identities=15% Similarity=0.169 Sum_probs=126.2
Q ss_pred CCCCCChHHHHHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccccCCCCCCCCCCCC-CccccccccccccccCc
Q psy7414 66 HNKKYHPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSK-NDCYYVNREYLLRAHTT 144 (320)
Q Consensus 66 ~~~~~HPl~il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~L~~P~DHPsR~~-~DTyYin~~~lLRTHTS 144 (320)
+.+..||+..+.+.|++.|.+ .| |..+.+ +.+++.. -|+..+.+++| ++ ..+++++++++|||+++
T Consensus 66 ~~g~~h~~~~l~~~ir~~~~~-----~G---f~EV~t-P~Le~~~-l~~~~g~~~~~---~m~~~~npl~e~~~LRp~l~ 132 (288)
T 3dsq_A 66 TVKHRPALLELEEKLAKALHQ-----QG---FVQVVT-PTIITKS-ALAKMTIGEDH---PLFSQVFWLDGKKCLRPMLA 132 (288)
T ss_dssp HTTSSCHHHHHHHHHHHHHHT-----TT---CEECCC-CSEEEHH-HHHTTSSCC-----CCTTTSCEEETTEEECSCSH
T ss_pred cCCCcCHHHHHHHHHHHHHHH-----CC---CEEEEC-CeeecHH-HHhhcCCCccc---ccEEeecccccchhhhhcCh
Confidence 468899999999999999964 35 998876 4555544 44555666665 23 35678998999999999
Q ss_pred hhhHHHHHc---C--C-CeEEEecccccCCCcCCCCCCcceeeeEEEEeeccccccCccCcccccceecccCCCchhhhh
Q psy7414 145 AHQSELIRM---G--L-DNFVVFGDVYRRDQIDSTHFPVFHQADGVHLLNRDQVSRGDIGVGTSLKIMTIFTPTSQEYFY 218 (320)
Q Consensus 145 Ahq~~~l~~---~--~-~~~l~~GdVYRRDeID~tHyPvFHQmEG~~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (320)
+++.+.++. . . -+++.+|+|||+|+.|++|+|+|||+||+.+..++
T Consensus 133 p~l~~~~r~~~~~~~~PlrlfeiG~vFR~E~~~~~r~~EF~qle~~i~g~~~---------------------------- 184 (288)
T 3dsq_A 133 PNLYTLWRELERLWDKPIRIFEIGTCYRKESQGAQHLNEFTMLNLTELGTPL---------------------------- 184 (288)
T ss_dssp HHHHHHHHHHTTTSCSCEEEEEEEEEECSCCSSSCCCSEEEEEEEEEETCCG----------------------------
T ss_pred HHHHHHHHHHHhCCCCCEEEEEEeeEEecCCCCCCcCccEEEEEEEEEcCCc----------------------------
Confidence 999876642 1 2 28999999999999999999999999999883110
Q ss_pred hhhccccccccCcceeeeecCCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHhCCCccEEEeccCCCCCCCceEEEe
Q psy7414 219 IKKCNKISESIGQNIVIFEQGGVHTDEKQARHTLDATKVMEQKLKNSLVKLAKILFGDDIQMRWISEYFPFTHPSWELEI 298 (320)
Q Consensus 219 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~q~~h~~~~~~~v~~~LK~tLe~lv~~lFg~~~~~Rw~~ayFPFTePS~EleV 298 (320)
++. ..+||++++.+++.| |- + -|+|++||.|+++
T Consensus 185 -------------~~~------------------------f~elkg~le~ll~~L-Gl--~------~~~~~~~s~e~~~ 218 (288)
T 3dsq_A 185 -------------EER------------------------HQRLEDMARWVLEAA-GI--R------EFELVTESSVVYG 218 (288)
T ss_dssp -------------GGH------------------------HHHHHHHHHHHHHHH-TC--C------CCEEEECCCCSSC
T ss_pred -------------hhh------------------------HHHHHHHHHHHHHHc-CC--C------CcEEecCCcceEE
Confidence 111 378999999999998 63 1 1788889888765
Q ss_pred eeC---CceEEEeeccccccccc
Q psy7414 299 LLN---DKWVEILGCGVIRHEIL 318 (320)
Q Consensus 299 ~~~---g~WLEvLGCGvv~~~vL 318 (320)
.+- .+|+||+||| +||+++
T Consensus 219 ~~~~l~~~~~eig~~G-v~p~vl 240 (288)
T 3dsq_A 219 DTVDVMKGDLELASGA-MGPHFL 240 (288)
T ss_dssp CCEEEEETTEEEEEEE-EESCTT
T ss_pred EEEEEEeCCEEEEEEE-ecHHHH
Confidence 442 3699999999 999998
No 13
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A*
Probab=99.75 E-value=9.4e-18 Score=156.97 Aligned_cols=167 Identities=16% Similarity=0.219 Sum_probs=131.2
Q ss_pred CCCCCCChHHHHHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccccCCCCCCCCCCCCCccccccccccccccCc
Q psy7414 65 LHNKKYHPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSKNDCYYVNREYLLRAHTT 144 (320)
Q Consensus 65 l~~~~~HPl~il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~L~~P~DHPsR~~~DTyYin~~~lLRTHTS 144 (320)
+-.+..||...+.+.|+++|.+. | |..+.. |+.+...+|+.+++|.++|.+ .++||+++..+|||+.|
T Consensus 71 ~~~g~~~~~~~i~~~ir~~l~~~-----G---f~EV~T--p~l~~~~~~~~~~~~~~~p~~--~~~~~~~~~~~LR~sls 138 (290)
T 3qtc_A 71 YAEERENYLGKLEREITRFFVDR-----G---FLEIKS--PILIPLEYIERMGIDNDTELS--KQIFRVDKNFCLRPMLT 138 (290)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHHT-----T---CEEECC--CSEEETHHHHHTTCCTTSSGG--GGCCEETTTEEECSCSH
T ss_pred hccccccHHHHHHHHHHHHHHHC-----C---CEEEEC--CceeeHHHHHhcCCCcCCchh--hhheeeCCCeeEcccCh
Confidence 45578899999999999999753 5 988865 555445699999999999876 46899999999999999
Q ss_pred hhhHHHHHc------CCCeEEEecccccCCCcCCCCCCcceeeeEEEEeeccccccCccCcccccceecccCCCchhhhh
Q psy7414 145 AHQSELIRM------GLDNFVVFGDVYRRDQIDSTHFPVFHQADGVHLLNRDQVSRGDIGVGTSLKIMTIFTPTSQEYFY 218 (320)
Q Consensus 145 Ahq~~~l~~------~~~~~l~~GdVYRRDeID~tHyPvFHQmEG~~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (320)
+.+.+.+.. +..+++-+|+|||+|..++.|.++|+|+|+..++..
T Consensus 139 p~L~~~l~~n~~~~~~p~rlfeiG~vFR~E~~~~~~~~Ef~ql~~~~~g~~----------------------------- 189 (290)
T 3qtc_A 139 PNLYNYLRKLDRALPDPIKIFEIGPCYRKESDGKEHLEEFTMLVFWQMGSG----------------------------- 189 (290)
T ss_dssp HHHHHHHHHHTTTSCSSEEEEEEEEEECCCSCSSSCCSEEEEEEEEEESTT-----------------------------
T ss_pred HHHHHHHHHhhccCCCCeEEEEEcCEEecCCCCCcCcchheEEEEEEEcCC-----------------------------
Confidence 999988753 225899999999999999999999999999988411
Q ss_pred hhhccccccccCcceeeeecCCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHhCCCccEEEeccCCCCCCCceEEEe
Q psy7414 219 IKKCNKISESIGQNIVIFEQGGVHTDEKQARHTLDATKVMEQKLKNSLVKLAKILFGDDIQMRWISEYFPFTHPSWELEI 298 (320)
Q Consensus 219 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~q~~h~~~~~~~v~~~LK~tLe~lv~~lFg~~~~~Rw~~ayFPFTePS~EleV 298 (320)
.. | .++|+.++.+++.+ |- ++++. -.|+.+|+.-.+|
T Consensus 190 --------------~~-f-----------------------~elkg~le~ll~~l-Gl--~~~~~--~~~~~hpgr~a~i 226 (290)
T 3qtc_A 190 --------------CT-R-----------------------ENLESIITDFLNHL-GI--DFKIV--GDSCMVFGDTLDV 226 (290)
T ss_dssp --------------CC-H-----------------------HHHHHHHHHHHHHH-TC--CCEEE--C------CEEEEE
T ss_pred --------------hH-H-----------------------HHHHHHHHHHHHHc-CC--CcEEe--CCCccccCCcccE
Confidence 00 2 57999999999987 54 45555 2467788877777
Q ss_pred eeCCceEEEeeccccccccc
Q psy7414 299 LLNDKWVEILGCGVIRHEIL 318 (320)
Q Consensus 299 ~~~g~WLEvLGCGvv~~~vL 318 (320)
.. +|.|| |||++||+|+
T Consensus 227 ~~--~~~~i-G~G~lhP~vl 243 (290)
T 3qtc_A 227 MH--GDLEL-SSALVGPIPL 243 (290)
T ss_dssp EE--TTEEE-EEEEESCCGG
T ss_pred ee--CCEEE-EEEEecHHHH
Confidence 76 48888 8999999999
No 14
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B*
Probab=99.73 E-value=2.5e-17 Score=173.72 Aligned_cols=188 Identities=10% Similarity=0.051 Sum_probs=142.0
Q ss_pred CCCCCChhhhccCC-CCCCCCCCChHHHHHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccccCCCCCCCCCCCC
Q psy7414 49 DYTNVTPKILSYLN-KNLHNKKYHPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSK 127 (320)
Q Consensus 49 ~~tNvt~~Ils~~g-r~l~~~~~HPl~il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~L~~P~DHPsR~~ 127 (320)
-|.|||+.. +. .....+..||...++++|++.|... | |...-+ .+.++..++ +.|+ |+
T Consensus 473 GydnIp~tl---P~~~~~~~g~~~~~~~~~~~ir~~L~~~-----G---f~Evit-ysfvs~~~~-~~l~-~~------- 531 (795)
T 2rhq_B 473 GYDEIPSSL---PVFGEVTSGELTDRQHKTRTLKETLEGA-----G---LNQAIT-YSLVSKDHA-KDFA-LQ------- 531 (795)
T ss_dssp CTTTSCCCC---CCCSSCCCCCCCHHHHHHHHHHHHHHHT-----T---CEECCC-CSEECTTTT-TTTC-SS-------
T ss_pred CcccCCccC---CCccccCCCCCCHHHHHHHHHHHHHHHC-----C---CEEEec-CCccCHHHH-HhhC-CC-------
Confidence 456776543 33 3456788999999999999999753 5 887765 456666666 7766 63
Q ss_pred Cc-ccccc-----ccccccccCchhhHHHHHcC-----C-CeEEEecccccCCCcCCCCCCcceeeeEEEEeeccccccC
Q psy7414 128 ND-CYYVN-----REYLLRAHTTAHQSELIRMG-----L-DNFVVFGDVYRRDQIDSTHFPVFHQADGVHLLNRDQVSRG 195 (320)
Q Consensus 128 ~D-TyYin-----~~~lLRTHTSAhq~~~l~~~-----~-~~~l~~GdVYRRDeID~tHyPvFHQmEG~~v~~~~~l~~~ 195 (320)
.| +++|. +..+||||+++.+.+.++.+ . -++|-+|+|||+|+-|.+| ++|||++|+.......-.
T Consensus 532 ~~~~v~L~NPis~e~svLRtsLlpgLL~~l~~N~~r~~~~vrlFEiG~Vf~~d~~~~~~-~e~~~la~l~~G~~~~~~-- 608 (795)
T 2rhq_B 532 ERPTISLLMPMSEAHATLRQSLLPHLIEATAYNVARKNKDVRLYEIGRVFFGNGEGELP-DEVEYLSGILTGEYVVNA-- 608 (795)
T ss_dssp CCCCEECSSCSCTTSSEECSCSHHHHHHHHHHHHHTTCCCEEEEEEEEEEECCCTTSCC-EEEEEEEEEEESEEEEEG--
T ss_pred CCceEEEcCCCchhhhhhhhccHHHHHHHHHHHhcCCCCCeEEEEEeeEEecCCcccCc-chhhEEEEEEEecccccc--
Confidence 33 57774 45799999999999999632 2 2899999999998766688 999999999995321100
Q ss_pred ccCcccccceecccCCCchhhhhhhhccccccccCcceeeeecCCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHhC
Q psy7414 196 DIGVGTSLKIMTIFTPTSQEYFYIKKCNKISESIGQNIVIFEQGGVHTDEKQARHTLDATKVMEQKLKNSLVKLAKILFG 275 (320)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~q~~h~~~~~~~v~~~LK~tLe~lv~~lFg 275 (320)
+.. ....+. ..+||+.|+.++..+ |
T Consensus 609 ------------------------w~~------~~~~~d------------------------F~dlKg~le~ll~~l-G 633 (795)
T 2rhq_B 609 ------------------------WQG------KKEEID------------------------FFIAKGVVDRVAEKL-N 633 (795)
T ss_dssp ------------------------GGT------EEEECC------------------------HHHHHHHHHHHHHHH-T
T ss_pred ------------------------ccC------CCCCCC------------------------HHHHHHHHHHHHHHc-C
Confidence 000 001112 378999999999998 6
Q ss_pred CCccEEEeccCCCCCCCceEEEeeeCCceEEEeecccccccccC
Q psy7414 276 DDIQMRWISEYFPFTHPSWELEILLNDKWVEILGCGVIRHEILD 319 (320)
Q Consensus 276 ~~~~~Rw~~ayFPFTePS~EleV~~~g~WLEvLGCGvv~~~vL~ 319 (320)
.+ +||++++|||++|+.+.+|+++|+ ||++||++||+|++
T Consensus 634 ~~--~~~~~~~~p~~hPGr~a~I~~~g~--~IG~~G~lHP~Vl~ 673 (795)
T 2rhq_B 634 LE--FSYKAGKIEGLHPGRTAIVSLEGQ--DIGFIGELHPQVAA 673 (795)
T ss_dssp CC--CEEEECCCTTEEEEEEEEEEETTE--EEEEEEEECHHHHH
T ss_pred Cc--EEEEECCCCcccCCcEEEEEECCE--EEEEEEEECHHHHH
Confidence 44 788899999999999999999986 99999999999985
No 15
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A*
Probab=99.62 E-value=6.6e-15 Score=138.77 Aligned_cols=94 Identities=18% Similarity=0.119 Sum_probs=70.0
Q ss_pred HHHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccccCCCCCCCC-----CCCCCccccccccccccccCchhhH-
Q psy7414 75 MLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHV-----SRSKNDCYYVNREYLLRAHTTAHQS- 148 (320)
Q Consensus 75 il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~L~~P~DHP-----sR~~~DTyYin~~~lLRTHTSAhq~- 148 (320)
.+.+.|+++|.+ .| |..++. |+.+.. || |.+|| +|..++. |.+++..|| +|+-+.
T Consensus 20 ~i~~~ir~~f~~-----~G---F~EVeT--P~l~~~--~~----~~~~~~~~e~a~~f~~~-~~~~~~~L~--~Spe~~~ 80 (294)
T 1nnh_A 20 KILEYMTDFFVK-----EG---FKWLLP--VIISPI--TD----PLWPDPAGEGMEPAEVE-IYGVKMRLT--HSMILHK 80 (294)
T ss_dssp HHHHHHHHHHHH-----TT---CEEECC--CCEESC--CC----CCCSCTTCCCCCCCEEE-ETTEEEEEC--SCSHHHH
T ss_pred HHHHHHHHHHHH-----CC---CEEEEC--CEEEEc--cc----hhccCCCCCcceeEEEE-cCCCCEEec--cChHHHH
Confidence 355666677754 35 999986 554333 23 88899 7766655 567778886 566554
Q ss_pred -HHHHcCCCeEEEecccccCCC--cC-CCCCCcceeeeEEEEe
Q psy7414 149 -ELIRMGLDNFVVFGDVYRRDQ--ID-STHFPVFHQADGVHLL 187 (320)
Q Consensus 149 -~~l~~~~~~~l~~GdVYRRDe--ID-~tHyPvFHQmEG~~v~ 187 (320)
.++..|..+++.+|.|||+|. +| .+|.|+|||+|+-.++
T Consensus 81 ~~l~~~g~~rvf~ig~~FR~E~pq~~~~RH~~EFtqle~e~~~ 123 (294)
T 1nnh_A 81 QLAIAMGLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVER 123 (294)
T ss_dssp HHHHHTTCCEEEEEEEEECCCCGGGCSSSCCSEEEEEEEEEET
T ss_pred HHHhhcCccceEEEEccEeCCCCCCCCCccccceeEEEEEecC
Confidence 344567889999999999999 98 5999999999999996
No 16
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=99.60 E-value=3.8e-15 Score=152.31 Aligned_cols=183 Identities=14% Similarity=0.116 Sum_probs=147.4
Q ss_pred CCCCCChhhhccCCCCCCCCCCChHHHHHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccccCCCCCCCCCCCCC
Q psy7414 49 DYTNVTPKILSYLNKNLHNKKYHPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSKN 128 (320)
Q Consensus 49 ~~tNvt~~Ils~~gr~l~~~~~HPl~il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~L~~P~DHPsR~~~ 128 (320)
-|.|||+... .. ...+..||...++++|++.|... | |...-+ .+.++..+|||.|++|.+| .
T Consensus 373 GYdnIp~tlP---~~-~~~g~~~~~~~~~~~ir~~l~~~-----G---f~Evit-ysf~s~~~~~~~l~~~~~~-----~ 434 (589)
T 3l4g_B 373 GYNNIQMTLP---KT-YTIANQFPLNKLTELLRHDMAAA-----G---FTEALT-FALCSQEDIADKLGVDISA-----T 434 (589)
T ss_dssp CGGGSCCCCC---CC-CCCCCCCHHHHHHHHHHHHHHHT-----T---CEECCC-CSEECHHHHTGGGTSCTTS-----S
T ss_pred CcccCCCcCC---Cc-cccCCCCHHHHHHHHHHHHHHHC-----C---CEEEec-CcccCHHHHHHHhCCCCCC-----C
Confidence 3556664433 22 34578899999999999999753 5 887766 5788999999999999998 4
Q ss_pred cccccc-----ccccccccCchhhHHHHHcCC-----CeEEEecccccCCCcCCCCCCcceeeeEEEEeeccccccCccC
Q psy7414 129 DCYYVN-----REYLLRAHTTAHQSELIRMGL-----DNFVVFGDVYRRDQIDSTHFPVFHQADGVHLLNRDQVSRGDIG 198 (320)
Q Consensus 129 DTyYin-----~~~lLRTHTSAhq~~~l~~~~-----~~~l~~GdVYRRDeID~tHyPvFHQmEG~~v~~~~~l~~~~~~ 198 (320)
|+.+|. +..+||||+.+.+.+.++.+. -++|-+|+|||+|+-+.+|.++++|+.|+... +
T Consensus 435 ~~v~L~NPis~e~svmRtsLlpgLL~~l~~N~~~~~~vrlFEiG~Vf~~d~~~~~~~~e~~~la~~~~g---------~- 504 (589)
T 3l4g_B 435 KAVHISNPKTAEFQVARTTLLPGLLKTIAANRKMPLPLKLFEISDIVIKDSNTDVGAKNYRHLCAVYYN---------K- 504 (589)
T ss_dssp CCCBBSSCSSGGGSEECSCSHHHHHHHHHHTTTSCSCEEEEEEEEEEEECTTSTTSEEEEEEEEEEEES---------S-
T ss_pred CeEEEcCCCchhHhHHHHHHHHHHHHHHHHHhcCCCceEEEEeeeEEecCCccccCCccccEEEEEEEC---------C-
Confidence 789984 347999999999999996331 27889999999999888999999999998762 1
Q ss_pred cccccceecccCCCchhhhhhhhccccccccCcceeeeecCCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHhCCCc
Q psy7414 199 VGTSLKIMTIFTPTSQEYFYIKKCNKISESIGQNIVIFEQGGVHTDEKQARHTLDATKVMEQKLKNSLVKLAKILFGDDI 278 (320)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~q~~h~~~~~~~v~~~LK~tLe~lv~~lFg~~~ 278 (320)
... | .+||+.++.++..+ |-+.
T Consensus 505 ---------------------------------~~~-f-----------------------~~lkg~le~ll~~l-g~~~ 526 (589)
T 3l4g_B 505 ---------------------------------NPG-F-----------------------EIIHGLLDRIMQLL-DVPP 526 (589)
T ss_dssp ---------------------------------SCC-H-----------------------HHHHHHHHHHHHHT-TCCB
T ss_pred ---------------------------------CCC-H-----------------------HHHHHHHHHHHHHc-CCCc
Confidence 011 3 68999999999875 6443
Q ss_pred -----cEEEeccCCCCCCCceEEEeeeCCceEEEeecccccccccC
Q psy7414 279 -----QMRWISEYFPFTHPSWELEILLNDKWVEILGCGVIRHEILD 319 (320)
Q Consensus 279 -----~~Rw~~ayFPFTePS~EleV~~~g~WLEvLGCGvv~~~vL~ 319 (320)
++++.++.+|+.+|+-..+|+.+|+ +|+-+|.+||+|++
T Consensus 527 ~~~~~~~~~~~~~~~~~hPGr~A~I~~~g~--~iG~~GelHP~v~~ 570 (589)
T 3l4g_B 527 GEDKGGYVIKASEGPAFFPGRCAEIFARGQ--SVGKLGVLHPDVIT 570 (589)
T ss_dssp STTTTSEEEEECCCTTEEEEEEEEEEETTE--EEEEEEEECHHHHH
T ss_pred cccccceEEeccCCCCccCCCEEEEEECCe--EEEEEEEECHHHHH
Confidence 4788999999999999999999986 67779999999985
No 17
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B*
Probab=99.52 E-value=5.1e-14 Score=148.47 Aligned_cols=163 Identities=18% Similarity=0.186 Sum_probs=124.1
Q ss_pred CCChHHHHHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccccCCCCCCCCCCCCCcccccc-----ccccccccC
Q psy7414 69 KYHPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSKNDCYYVN-----REYLLRAHT 143 (320)
Q Consensus 69 ~~HPl~il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~L~~P~DHPsR~~~DTyYin-----~~~lLRTHT 143 (320)
..||...++++|++.|... | |...-+. +.++..++ +.| |.+ +|+++|. +..+||||+
T Consensus 487 ~~~~~~~~~~~ir~~L~~~-----G---f~Evity-sfvs~~~~-~~l--~~~------~~~v~L~NPis~d~svLRtsL 548 (785)
T 1b7y_B 487 GVEAPYRKEQRLREVLSGL-----G---FQEVYTY-SFMDPEDA-RRF--RLD------PPRLLLLNPLAPEKAALRTHL 548 (785)
T ss_dssp STTHHHHHHHHHHHHHHHH-----T---CEECCCC-SEECTTHH-HHT--TCC------CCSCEESSCSSTTSSEECSCS
T ss_pred cCCHHHHHHHHHHHHHHHC-----C---CEEEecC-cccCHHHH-Hhc--CCC------CCeEEEcCCCchhhhhhhhhh
Confidence 7899999999999999753 5 8776553 45555454 543 543 6678886 467999999
Q ss_pred chhhHHHHHc----C--CC-eEEEecccccCCCcCCCCCCcceeeeEEEEeeccccccCccCcccccceecccCCCchhh
Q psy7414 144 TAHQSELIRM----G--LD-NFVVFGDVYRRDQIDSTHFPVFHQADGVHLLNRDQVSRGDIGVGTSLKIMTIFTPTSQEY 216 (320)
Q Consensus 144 SAhq~~~l~~----~--~~-~~l~~GdVYRRDeID~tHyPvFHQmEG~~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 216 (320)
.+.+.+.++. + .+ ++|-+|+||| + ++|+|+.|+.........=+ +
T Consensus 549 lpgLL~~l~~N~~r~~~~~vrlFEiG~Vf~-~-------~e~~~lagl~~G~~~~~~w~-~------------------- 600 (785)
T 1b7y_B 549 FPGLVRVLKENLDLDRPERALLFEVGRVFR-E-------REETHLAGLLFGEGVGLPWA-K------------------- 600 (785)
T ss_dssp HHHHHHHHHHHHHHSCCSCEEEEEEEEEES-S-------SEEEEEEEEEESSCBSCSSS-S-------------------
T ss_pred HHHHHHHHHHHhhcCCCCCeEEEEEeeeec-c-------ChhhEEEEEEECCCcccccC-c-------------------
Confidence 9999999963 2 33 8999999999 2 89999999999532110000 0
Q ss_pred hhhhhccccccccCcceeeeecCCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHhCCCccEEEeccCCCCCCCceEE
Q psy7414 217 FYIKKCNKISESIGQNIVIFEQGGVHTDEKQARHTLDATKVMEQKLKNSLVKLAKILFGDDIQMRWISEYFPFTHPSWEL 296 (320)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~q~~h~~~~~~~v~~~LK~tLe~lv~~lFg~~~~~Rw~~ayFPFTePS~El 296 (320)
...+. ..+||+.|+.++..+ | ++++|++++|||++|+.+.
T Consensus 601 -------------~~~vd------------------------f~dlKg~le~ll~~l-g--i~~~~~~~~~p~~hPGr~a 640 (785)
T 1b7y_B 601 -------------ERLSG------------------------YFLLKGYLEALFARL-G--LAFRVEAQAFPFLHPGVSG 640 (785)
T ss_dssp -------------CCBCS------------------------HHHHHHHHHHHHHHH-T--CCCEEECCCCTTEEEEEEE
T ss_pred -------------cCCcC------------------------HHHHHHHHHHHHHHc-C--CceEEeecCCCcccCceEE
Confidence 01122 378999999999998 6 4788999999999999999
Q ss_pred EeeeCCceEEEeecccccccccC
Q psy7414 297 EILLNDKWVEILGCGVIRHEILD 319 (320)
Q Consensus 297 eV~~~g~WLEvLGCGvv~~~vL~ 319 (320)
+|+++|+ +|+.||++||+|++
T Consensus 641 ~I~~~g~--~iG~~G~lHP~Vl~ 661 (785)
T 1b7y_B 641 RVLVEGE--EVGFLGALHPEIAQ 661 (785)
T ss_dssp EEEETTE--EEEEEEEECHHHHH
T ss_pred EEEECCE--EEEEEEEECHHHHH
Confidence 9999886 66668999999985
No 18
>3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis}
Probab=99.00 E-value=1.3e-09 Score=97.88 Aligned_cols=170 Identities=15% Similarity=0.118 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccccCCCCCCCCCCCCCccccc-c----ccccccccCchhhH
Q psy7414 74 CMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSKNDCYYV-N----REYLLRAHTTAHQS 148 (320)
Q Consensus 74 ~il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~L~~P~DHPsR~~~DTyYi-n----~~~lLRTHTSAhq~ 148 (320)
..++++|++.+.. .| |...-+ -+.++. ..||.|+.++++ ++..| | +..+|||+......
T Consensus 7 ~~~~~~ir~~l~~-----~G---~~Evit-ysf~~~-~~~~~~~~~~~~------~~v~l~NPls~e~~vmRtsLlpgLL 70 (213)
T 3ig2_A 7 NKLQNLVAEQLVG-----CG---FNEILN-NSLTRA-AYYDGLESYPSK------NLVMLLNPLSADLNCMRQTLLFGGL 70 (213)
T ss_dssp HHHHHHHHHHHHH-----TT---CEECCC-CSEECG-GGGTTCSSSCGG------GCEEBSSGGGCSCCEECSCSHHHHH
T ss_pred HHHHHHHHHHHHH-----CC---CeEEec-cccCCH-HHHHhhcccCcC------CeEEEeCCcchhHHHHHHHhHHHHH
Confidence 4678888888864 25 755444 245554 479999876543 45566 3 25799999999999
Q ss_pred HHHHcC-----CC-eEEEecccccCCCcCC-CCCC--ccee---eeEEEEeeccccccCccCcccccceecccCCCchhh
Q psy7414 149 ELIRMG-----LD-NFVVFGDVYRRDQIDS-THFP--VFHQ---ADGVHLLNRDQVSRGDIGVGTSLKIMTIFTPTSQEY 216 (320)
Q Consensus 149 ~~l~~~-----~~-~~l~~GdVYRRDeID~-tHyP--vFHQ---mEG~~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 216 (320)
+.++.+ .+ ++|-+|+||++|+.|. ++.| .++| +-|+....+..- +
T Consensus 71 ~~~~~N~~r~~~~v~lFEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~-------~---------------- 127 (213)
T 3ig2_A 71 ESIAHNANRKNADLKFFEFGNCYHFDAEKKNPEKVLAPYSEDYHLGLWVTGKMVSN-------S---------------- 127 (213)
T ss_dssp HHHHHC------CCEEEEEEEEEEECC----------CEEEEEEEEEEEEEEECCS-------C----------------
T ss_pred HHHHHHhcCCCCCeeEEEeeeEEecCcccccccccccccchhHEEEEEEECCCccc-------c----------------
Confidence 999643 23 7899999999997664 3433 2444 444433211100 0
Q ss_pred hhhhhccccccccCcceeeeecCCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHhCCCc-cEEEeccCCCCCCCceE
Q psy7414 217 FYIKKCNKISESIGQNIVIFEQGGVHTDEKQARHTLDATKVMEQKLKNSLVKLAKILFGDDI-QMRWISEYFPFTHPSWE 295 (320)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~q~~h~~~~~~~v~~~LK~tLe~lv~~lFg~~~-~~Rw~~ayFPFTePS~E 295 (320)
+ .+ ...+.=..+||+.++.++..+ |-+. .+++.++.+|+.+|+.+
T Consensus 128 --------------------------w-----~~--~~~~~df~dlKg~ve~ll~~l-g~~~~~~~~~~~~~~~~hPgr~ 173 (213)
T 3ig2_A 128 --------------------------W-----AH--ADENTSVYELKAYVENIFKRL-GLDLHSLVVGNLSDDIYSTALT 173 (213)
T ss_dssp --------------------------C-----------CHHHHHHHHHHHHHHHHHT-TBCGGGCEEEEECSSSEEEEEE
T ss_pred --------------------------C-----CC--CCCCcCHHHHHHHHHHHHHHh-CCCccceEEeeccCCCCCCCeE
Confidence 0 00 001112478999999999886 6443 38999999999999999
Q ss_pred EEeeeCCceEEEeecccccccccC
Q psy7414 296 LEILLNDKWVEILGCGVIRHEILD 319 (320)
Q Consensus 296 leV~~~g~WLEvLGCGvv~~~vL~ 319 (320)
++ +++|+ +|+.+|++||+|++
T Consensus 174 a~-~~~g~--~iG~~G~lhP~v~~ 194 (213)
T 3ig2_A 174 VN-TKGGK--RLATFGVVTKKMLK 194 (213)
T ss_dssp EE-CTTCC--EEEEEEEECHHHHH
T ss_pred EE-eECCc--EEEEEeEECHHHHH
Confidence 98 77775 78999999999975
No 19
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=98.91 E-value=3.3e-09 Score=105.06 Aligned_cols=94 Identities=12% Similarity=0.122 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccccCCCCCCCCCCCCCccccccccccccccCchhhHHH-H
Q psy7414 73 LCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSKNDCYYVNREYLLRAHTTAHQSEL-I 151 (320)
Q Consensus 73 l~il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~L~~P~DHPsR~~~DTyYin~~~lLRTHTSAhq~~~-l 151 (320)
.+.+.+.|+++|.+ .| |..++. |+.+.. ..|++|++-++.|.++...|| +|+-+... +
T Consensus 138 rs~i~~~ir~~f~~-----~g---F~eVeT--P~l~~~---------~~e~~~~~f~~~~~~~~~~Lr--~Spel~~~~~ 196 (434)
T 1x54_A 138 KETLIMAAREWLLK-----DG---WHEVFP--PILVTG---------AVEGGATLFKLKYFDKYAYLS--QSAQLYLEAA 196 (434)
T ss_dssp HHHHHHHHHHHHHH-----TT---CEECCC--CSEESC---------CSSCGGGCCEEEETTEEEEEC--SCSHHHHHHH
T ss_pred HHHHHHHHHHHHHH-----CC---CEEEeC--cEEEee---------cCCCCceeEEEeecCCcEEec--cChHHHHHHH
Confidence 34466677777865 35 999886 555432 689999999999999999999 77766533 4
Q ss_pred HcCCCeEEEecccccCCCcCC-CCCCcceeeeEEEEe
Q psy7414 152 RMGLDNFVVFGDVYRRDQIDS-THFPVFHQADGVHLL 187 (320)
Q Consensus 152 ~~~~~~~l~~GdVYRRDeID~-tHyPvFHQmEG~~v~ 187 (320)
..+..+++.+|.|||+|..|+ +|.|+|||+|+-.++
T Consensus 197 ~~g~~rvf~ig~~FR~E~~~~~RH~pEFtqle~e~~~ 233 (434)
T 1x54_A 197 IFGLEKVWSLTPSFRAEKSRTRRHLTEFWHLELEAAW 233 (434)
T ss_dssp HHHHSEEEEEEEEECCCCCCCSSCCSEEEEEEEEEET
T ss_pred hcCccceEEEecceecCCCCCcccccEEEEeeEEEcC
Confidence 456789999999999999998 799999999999996
No 20
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=98.75 E-value=2.6e-08 Score=98.61 Aligned_cols=93 Identities=15% Similarity=0.219 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccccCCCCCCCCCCCCCccccccccccccccCchhhH-HHHH
Q psy7414 74 CMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSKNDCYYVNREYLLRAHTTAHQS-ELIR 152 (320)
Q Consensus 74 ~il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~L~~P~DHPsR~~~DTyYin~~~lLRTHTSAhq~-~~l~ 152 (320)
+.+.+.|+++|.+ .| |..++. |+.+.. ..++++++-++.|.++...|| +|+-+. +.+.
T Consensus 138 s~i~~~ir~ff~~-----~g---F~eV~T--P~l~~~---------~~e~~~~~f~~~~~~~~~~L~--~Spql~~~~~~ 196 (429)
T 1wyd_A 138 SLALKAFRETLYK-----EG---FIEIFT--PKIIAS---------ATEGGAQLFPVIYFGKEAFLA--QSPQLYKELMA 196 (429)
T ss_dssp HHHHHHHHHHHHH-----TT---CEECCC--CSEESS---------CSSTTCCCCEEEETTEEEEEC--SCCHHHHHHHH
T ss_pred HHHHHHHHHHHhh-----CC---CEEEEC--CEEEee---------CCCCCceeEEEecCCceEEec--CCcHHHHHHHH
Confidence 3455666777764 25 998876 665432 688999999999999888884 555554 3455
Q ss_pred cCCCeEEEecccccCCCcCC-CCCCcceeeeEEEEe
Q psy7414 153 MGLDNFVVFGDVYRRDQIDS-THFPVFHQADGVHLL 187 (320)
Q Consensus 153 ~~~~~~l~~GdVYRRDeID~-tHyPvFHQmEG~~v~ 187 (320)
.|.++++.+|.|||+|+.|+ +|.|+|||+|.-.++
T Consensus 197 ~g~~rvf~ig~~FR~E~~~~~RH~pEFtqle~e~~~ 232 (429)
T 1wyd_A 197 GVVERVFEVAPAWRAEESDTPFHLAEFISMDVEMAF 232 (429)
T ss_dssp HHHSEEEEEEEEECCCCCCSSSCCSEEEEEEEEEET
T ss_pred hCcCceEEEcccccccCCccccccceeeEeeeeecC
Confidence 67789999999999999998 799999999999996
No 21
>3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis}
Probab=98.69 E-value=6.2e-08 Score=86.84 Aligned_cols=171 Identities=11% Similarity=0.033 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccccCCCCCCCCCCCCCccccc-c----ccccccccCchhh
Q psy7414 73 LCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSKNDCYYV-N----REYLLRAHTTAHQ 147 (320)
Q Consensus 73 l~il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~L~~P~DHPsR~~~DTyYi-n----~~~lLRTHTSAhq 147 (320)
...++++|++.+... | |...-+. +.++. .+||.|+.++++ ++..| | +..+|||+.....
T Consensus 6 ~~~~~~~ir~~L~~~-----G---~~Evity-sf~s~-~~~~~~~~~~~~------~~v~l~NPls~e~~vmRtsLlpgL 69 (213)
T 3ica_A 6 RYKWQTVVSEQLVGA-----G---FNEILNN-SLTAG-SYYEGLKSHPRE------MAVELMNPLSQELNCMRQTLLFGG 69 (213)
T ss_dssp HHHHHHHHHHHHHHT-----T---CEECCCC-SEEEG-GGGTTCSSSCGG------GCCBCSSBSCSSEEEECSSSHHHH
T ss_pred HHHHHHHHHHHHHHC-----C---Cceeeec-cCCCH-HHHhhhcccCcC------CeEEecCCccHHHHHHHHHhHHHH
Confidence 356788888888652 5 7554442 44554 489988765432 33444 2 2469999999999
Q ss_pred HHHHHc----CC-C-eEEEecccccCCCcCC------CCCCcceeeeEEEEeeccccccCccCcccccceecccCCCchh
Q psy7414 148 SELIRM----GL-D-NFVVFGDVYRRDQIDS------THFPVFHQADGVHLLNRDQVSRGDIGVGTSLKIMTIFTPTSQE 215 (320)
Q Consensus 148 ~~~l~~----~~-~-~~l~~GdVYRRDeID~------tHyPvFHQmEG~~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 215 (320)
.+.++. +. + ++|=+|+||++|+-+. +++.+.+++-|+....+..-. .
T Consensus 70 L~~~~~N~~r~~~~~~lFEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~---w------------------ 128 (213)
T 3ica_A 70 LETLSHNLRRKHLSLYLFEWGKCYRFHAAKRTDETPLAAYAEDDRLGIWICGQRVHNS---W------------------ 128 (213)
T ss_dssp HHHHHHHHTTTCSEEEEEEEEEEEEEECCCC--CCSSCEEEEEEEEEEEEEEBCCC------------------------
T ss_pred HHHHHHHHcCCCCCeeEEEeeeEEecCCccccccccccccchhhEEEEEEeCCCCccc---C------------------
Confidence 998853 22 2 7888999999987543 234455566666553211100 0
Q ss_pred hhhhhhccccccccCcceeeeecCCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHhCCCc-cEEEeccCCCCCCCce
Q psy7414 216 YFYIKKCNKISESIGQNIVIFEQGGVHTDEKQARHTLDATKVMEQKLKNSLVKLAKILFGDDI-QMRWISEYFPFTHPSW 294 (320)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~q~~h~~~~~~~v~~~LK~tLe~lv~~lFg~~~-~~Rw~~ayFPFTePS~ 294 (320)
.. .+.... ..++|+.++.++..+ |-+. .+++.++.+|+.+|+.
T Consensus 129 -----~~------~~~~~d------------------------f~d~Kg~ve~ll~~l-gi~~~~~~~~~~~~~~~hpgr 172 (213)
T 3ica_A 129 -----AH------PEEPTS------------------------VFELKAVVEQVLCRV-GIETGAYTLKTADNDLYASAM 172 (213)
T ss_dssp -------------CCCBCC------------------------HHHHHHHHHHHHHHT-TCCGGGEEEEECCCTTEEEEE
T ss_pred -----CC------CCCCcC------------------------HHHHHHHHHHHHHHh-CCCccceEEeeccCCCCCCCe
Confidence 00 001112 368999999999886 6432 3889999999999999
Q ss_pred EEEeeeCCceEEEeecccccccccC
Q psy7414 295 ELEILLNDKWVEILGCGVIRHEILD 319 (320)
Q Consensus 295 EleV~~~g~WLEvLGCGvv~~~vL~ 319 (320)
.++ +.+|+ +|+-+|.+||+|++
T Consensus 173 ~a~-~~~g~--~iG~~G~lhP~v~~ 194 (213)
T 3ica_A 173 EVK-TRSGK--LLGTFGTVSTELIK 194 (213)
T ss_dssp EEE-ETTCC--EEEEEEEECHHHHH
T ss_pred EEE-eECCc--EEEEEeEECHHHHH
Confidence 888 77775 78889999999975
No 22
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=98.43 E-value=3.4e-07 Score=90.44 Aligned_cols=92 Identities=11% Similarity=0.129 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccccCCCCCCCCCCCCCccccccccccccccCchhhH-HHHHc
Q psy7414 75 MLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSKNDCYYVNREYLLRAHTTAHQS-ELIRM 153 (320)
Q Consensus 75 il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~L~~P~DHPsR~~~DTyYin~~~lLRTHTSAhq~-~~l~~ 153 (320)
.+.+.|+++|.+ .| |..++. |+.+.. ..|+++++-++.|.++...|| +|+-+. +.+..
T Consensus 130 ~i~~~ir~~f~~-----~g---F~EV~T--Pil~~~---------~~e~~~~~f~~~~~g~~~~L~--~Spel~~~~l~~ 188 (422)
T 1n9w_A 130 ALVRGFRRYLDR-----QD---FTEIFT--PKVVRA---------GAEGGSGLFGVDYFEKRAYLA--QSPQLYKQIMVG 188 (422)
T ss_dssp HHHHHHHHHHHH-----TT---CEECCC--C---------------------------------------CHHHHHHHHH
T ss_pred HHHHHHHHHHHH-----CC---CEEEEC--CEEEEe---------CCCCCceeEEEeeCCCcEEee--eCHHHHHHHHhh
Confidence 355666677754 35 999876 666543 578999988888888888886 344333 22335
Q ss_pred CCCeEEEecccccCCCcCC-CCCCcceeeeEEEEe
Q psy7414 154 GLDNFVVFGDVYRRDQIDS-THFPVFHQADGVHLL 187 (320)
Q Consensus 154 ~~~~~l~~GdVYRRDeID~-tHyPvFHQmEG~~v~ 187 (320)
+..+++.+|.|||.|+.|+ +|.|+|||+|+-..+
T Consensus 189 g~~rvf~ig~~FR~E~~~~~RH~pEFtqle~e~~~ 223 (422)
T 1n9w_A 189 VFERVYEVAPVWRMEEHHTSRHLNEYLSLDVEMGF 223 (422)
T ss_dssp HHSEEEEEEEC-------------CCEEEEEEEES
T ss_pred CCCceeEEeCceECCCCCCCcccceeEEeeeeeeC
Confidence 5689999999999999998 799999999999997
No 23
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=97.85 E-value=7.3e-05 Score=72.06 Aligned_cols=57 Identities=14% Similarity=0.199 Sum_probs=44.9
Q ss_pred CCCCCCccccccccccccccCchhhH--HHHHcCCCeEEEecccccCCCcCCCCCCcceeeeEEEEe
Q psy7414 123 VSRSKNDCYYVNREYLLRAHTTAHQS--ELIRMGLDNFVVFGDVYRRDQIDSTHFPVFHQADGVHLL 187 (320)
Q Consensus 123 PsR~~~DTyYin~~~lLRTHTSAhq~--~~l~~~~~~~l~~GdVYRRDeID~tHyPvFHQmEG~~v~ 187 (320)
|+|...-.+|| + +|.-.. ++|..|.++++-+|+|||.+.++++|.|+|.|+|.-..+
T Consensus 83 ~~~~~~~~~yL------~--~Spql~~k~l~~~g~~rvyqIg~~FR~E~~~~rH~pEFt~lE~e~af 141 (345)
T 3a5y_A 83 PGHSQGMNLWL------M--TSPEYHMKRLLVAGCGPVFQLCRSFRNEEMGRYHNPEFTMLEWYRPH 141 (345)
T ss_dssp STTSCCEEEEE------C--SCSHHHHHHHHHTTCCSEEEEEEEECCCCCBTTBCSEEEEEEEEEET
T ss_pred cccccCCCEee------c--CCHHHHHHHHHHcCCCcEEEEEcceeCCCCcccccchhheeeeeeeC
Confidence 56665555663 3 343222 467788999999999999999999999999999998886
No 24
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=97.71 E-value=0.0002 Score=72.15 Aligned_cols=54 Identities=22% Similarity=0.356 Sum_probs=44.1
Q ss_pred cccccccccccCchhh--HHHHHcCCCeEEEecccccCCCcCCCCCCcceeeeEEEEe
Q psy7414 132 YVNREYLLRAHTTAHQ--SELIRMGLDNFVVFGDVYRRDQIDSTHFPVFHQADGVHLL 187 (320)
Q Consensus 132 Yin~~~lLRTHTSAhq--~~~l~~~~~~~l~~GdVYRRDeID~tHyPvFHQmEG~~v~ 187 (320)
|.+...-|| +|+-. .+++..|.++++.+|.|||.+.+|++|.|+|+|+|.-..|
T Consensus 219 ~~~~~~yLr--~SpqLylk~l~v~G~~rVyeig~~FR~E~~~~rH~pEFT~lE~e~af 274 (493)
T 3a74_A 219 ALDMTLYMR--IAIELHLKRLIVGGLEKVYEIGRVFRNEGISTRHNPEFTMLELYEAY 274 (493)
T ss_dssp TTTEEEEEC--SCSHHHHHHHHHTTCCEEEEEEEEECCCCCBTTBCSEEEEEEEEEET
T ss_pred CCCceeEEe--cCHHHHHHHHhhcccCceEEECccccCCCCCcccCCceeEEEEEecC
Confidence 446667788 34432 2456678899999999999999999999999999999887
No 25
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=97.59 E-value=0.00038 Score=70.32 Aligned_cols=56 Identities=16% Similarity=0.231 Sum_probs=43.4
Q ss_pred cccccccccccCchhhHHHHHcCCCeEEEecccccCCCcCCCCCCcceeeeEEEEe
Q psy7414 132 YVNREYLLRAHTTAHQSELIRMGLDNFVVFGDVYRRDQIDSTHFPVFHQADGVHLL 187 (320)
Q Consensus 132 Yin~~~lLRTHTSAhq~~~l~~~~~~~l~~GdVYRRDeID~tHyPvFHQmEG~~v~ 187 (320)
|.+...-||+=.--+-.+++..|.++++-+|.|||.+.+|++|.|+|.|+|--..|
T Consensus 228 ~~~~~~yL~~SpqLylk~L~v~G~~rVyeIg~~FR~E~~~~rH~pEFt~lE~e~af 283 (504)
T 1e1o_A 228 ALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFTMMELYMAY 283 (504)
T ss_dssp TTTEEEEECSCSHHHHHHHHHHTCCEEEEEEEEECCCCCCC-CCSEEEEEEEEEES
T ss_pred CCCceEEeccCHHHHHHHHhhcCCCcEEEEcccccCCCCCccccCceeeeeeeecC
Confidence 45666778842222223456678999999999999999999999999999999887
No 26
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=97.38 E-value=0.00086 Score=67.91 Aligned_cols=56 Identities=21% Similarity=0.310 Sum_probs=45.8
Q ss_pred cccccccccccCchhhHHHHHcCCCeEEEecccccCCCcCCCCCCcceeeeEEEEe
Q psy7414 132 YVNREYLLRAHTTAHQSELIRMGLDNFVVFGDVYRRDQIDSTHFPVFHQADGVHLL 187 (320)
Q Consensus 132 Yin~~~lLRTHTSAhq~~~l~~~~~~~l~~GdVYRRDeID~tHyPvFHQmEG~~v~ 187 (320)
|++...-||.-.--+-.+++..|.++++-+|.|||++.+|++|.|+|.|+|.-..|
T Consensus 221 ~~~~~~yL~~SpqL~lk~liv~g~~rVyeig~~FR~E~~~trH~pEFtmlE~e~af 276 (521)
T 3bju_A 221 ELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAY 276 (521)
T ss_dssp TTTEEEEECSCSHHHHHHHHHTTCCEEEEEEEEECCSCCBTTBCSEEEEEEEEEET
T ss_pred cCCcceEeeCCHHHHHHHHHhcCcCceEEEEcceeCCCCCCccchhhhhhhhhhhc
Confidence 45666778744444444567788999999999999999999999999999999886
No 27
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=97.36 E-value=0.0011 Score=67.34 Aligned_cols=56 Identities=18% Similarity=0.258 Sum_probs=44.7
Q ss_pred cccccccccccCchhhHHHHHcCCCeEEEecccccCCCcCCCCCCcceeeeEEEEe
Q psy7414 132 YVNREYLLRAHTTAHQSELIRMGLDNFVVFGDVYRRDQIDSTHFPVFHQADGVHLL 187 (320)
Q Consensus 132 Yin~~~lLRTHTSAhq~~~l~~~~~~~l~~GdVYRRDeID~tHyPvFHQmEG~~v~ 187 (320)
|++.+.-||.=.=-+-.+++..|.++++-+|.|||.+.+|++|.|+|.|+|.-..|
T Consensus 249 ~~~~~~yL~~SpqLylk~L~v~G~~rVyeIg~~FR~E~~~~rH~pEFtmlE~e~af 304 (529)
T 4ex5_A 249 ALDMEMFLRIAPELYLKRLIVGGFERVFEINRNFRNEGVSPRHNPEFTMMEFYAAY 304 (529)
T ss_dssp TTTEEEEECSCSHHHHHHHHHTTCSEEEEEEEEECCSCCBTTBCSEEEEEEEEEET
T ss_pred cCCcceecccCHHHHHHHHHhcCCCcEEEeehheecCCCCCCcccHhHhhhhhhhc
Confidence 56666677732222223566788999999999999999999999999999999886
No 28
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A*
Probab=97.21 E-value=3.8e-05 Score=78.19 Aligned_cols=66 Identities=23% Similarity=0.316 Sum_probs=54.7
Q ss_pred CCCCCChhhhccCCCCCCCCCCChHHHHHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccccCCCCCC-CCCCCC
Q psy7414 49 DYTNVTPKILSYLNKNLHNKKYHPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKD-HVSRSK 127 (320)
Q Consensus 49 ~~tNvt~~Ils~~gr~l~~~~~HPl~il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~L~~P~D-HPsR~~ 127 (320)
.+.|+++.+ ....+..||+..++++|++.|.. +| |..+.+ +.+++.++| +|++ ||||++
T Consensus 31 Gyd~i~~~~------~~~~g~~hp~~~~~~~Ir~~l~~-----lG---F~Ev~~-~s~~s~~~n-----~p~~~Hpar~~ 90 (534)
T 2du3_A 31 SPNELYPRV------GFSFGKEHPLFATIQRLREAYLS-----IG---FSEVVN-PLIVEDVHV-----KKQFGREALAV 90 (534)
T ss_dssp CGGGSTTSS------CCCCCCCCHHHHHHHHHHHHHHH-----TT---CEECCC-CCEEETHHH-----HHHHGGGHHHH
T ss_pred CCCCCCCcc------CCCCCCCCHHHHHHHHHHHHHHH-----CC---CEEEeC-ceEeChhhc-----ccccccchhhh
Confidence 355666554 45778999999999999999975 35 999876 788889899 8898 999999
Q ss_pred Cc-ccccc
Q psy7414 128 ND-CYYVN 134 (320)
Q Consensus 128 ~D-TyYin 134 (320)
+| |||++
T Consensus 91 ~Dr~fyl~ 98 (534)
T 2du3_A 91 LDRCFYLA 98 (534)
T ss_dssp HTTSCEEE
T ss_pred ccceeecc
Confidence 99 99986
No 29
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=97.14 E-value=0.0022 Score=63.71 Aligned_cols=54 Identities=15% Similarity=0.316 Sum_probs=41.1
Q ss_pred cccccccccccCchhhH--HHHHcCCCeEEEecccccCCCcCC-CCCCcceeeeEEEEe
Q psy7414 132 YVNREYLLRAHTTAHQS--ELIRMGLDNFVVFGDVYRRDQIDS-THFPVFHQADGVHLL 187 (320)
Q Consensus 132 Yin~~~lLRTHTSAhq~--~~l~~~~~~~l~~GdVYRRDeID~-tHyPvFHQmEG~~v~ 187 (320)
|.+...-|| +|+-.. .++..|.++++-+|.|||.++.|+ .|.|+|.|+|.-..|
T Consensus 180 ~~~~~~yL~--~Spql~~q~l~~~g~~rvf~i~~~FR~E~~~t~RH~pEFt~le~e~a~ 236 (438)
T 3nem_A 180 YFEEDAFLA--QSPQLYKQIMMASGLDRVYEIAPIFRAEEHNTTRHLNEAWSIDSEMAF 236 (438)
T ss_dssp ETTEEEEEC--SCSHHHHHHGGGTTCCEEEEEEEEECCCSSCCTTCCSEEEEEEEEEES
T ss_pred eCCccEEEe--cChHHHHHHHHhcCCCceEEEcceEECCCCCCcccccceeeeeeeecc
Confidence 345555554 333222 344578899999999999999996 799999999999987
No 30
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=96.99 E-value=0.0046 Score=63.41 Aligned_cols=45 Identities=20% Similarity=0.338 Sum_probs=38.8
Q ss_pred CchhhH--HHHHcCCCeEEEecccccCCCcCCCCCCcceeeeEEEEe
Q psy7414 143 TTAHQS--ELIRMGLDNFVVFGDVYRRDQIDSTHFPVFHQADGVHLL 187 (320)
Q Consensus 143 TSAhq~--~~l~~~~~~~l~~GdVYRRDeID~tHyPvFHQmEG~~v~ 187 (320)
+|+-+. .+|..|.++++-+|+|||.+.+|++|-|+|.|+|--..|
T Consensus 198 qSPQl~kq~Lmv~G~~rvfqI~~~FR~E~~~~~r~pEFT~lE~e~af 244 (580)
T 1l0w_A 198 QSPQLFKQMLMVAGLDRYFQIARCFRDEDLRADRQPDFTQLDLEMSF 244 (580)
T ss_dssp SCSHHHHHHHHHTTCSEEEEEEEEECCCCCCSSCCSEEEEEEEEEES
T ss_pred cCHHHHHHHHHHhccCCeEEEeceeeCCCCCCCcCCCccceeeeecC
Confidence 455443 356788999999999999999999999999999999887
No 31
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=96.92 E-value=0.005 Score=63.12 Aligned_cols=45 Identities=18% Similarity=0.310 Sum_probs=38.8
Q ss_pred CchhhH--HHHHcCCCeEEEecccccCCCcCCCCCCcceeeeEEEEe
Q psy7414 143 TTAHQS--ELIRMGLDNFVVFGDVYRRDQIDSTHFPVFHQADGVHLL 187 (320)
Q Consensus 143 TSAhq~--~~l~~~~~~~l~~GdVYRRDeID~tHyPvFHQmEG~~v~ 187 (320)
+|+-+. .+|..|.++++-+|+|||.+.+|++|-|+|.|+|--..|
T Consensus 192 qSPQl~kq~Lmv~G~~rvfqI~~~FR~E~~~t~r~pEFT~lE~e~af 238 (585)
T 1c0a_A 192 QSPQLFKQLLMMSGFDRYYQIVKCFRDEDLRADRQPEFTQIDVETSF 238 (585)
T ss_dssp SCSHHHHHHHHHTTCCEEEEEEEEECCCCCBTTBCSEEEEEEEEEES
T ss_pred cCHHHHHHHHHhcCCCceEEEeceeecCCCCCCcCcccceeeeeecC
Confidence 455443 356788999999999999999999999999999999886
No 32
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=96.84 E-value=0.0055 Score=60.56 Aligned_cols=35 Identities=11% Similarity=0.301 Sum_probs=32.2
Q ss_pred cCCCeEEEecccccCCCcCC-CCCCcceeeeEEEEe
Q psy7414 153 MGLDNFVVFGDVYRRDQIDS-THFPVFHQADGVHLL 187 (320)
Q Consensus 153 ~~~~~~l~~GdVYRRDeID~-tHyPvFHQmEG~~v~ 187 (320)
.|.++++-+|.|||.+.+|. +|.|+|.|+|.-..|
T Consensus 195 ~g~~rvfeIg~~FR~E~~~t~RH~~EFT~lE~e~af 230 (435)
T 2xgt_A 195 PTLGDVFCIAQSYRAEKSRTRRHLAEYAHVEAECPF 230 (435)
T ss_dssp HHHCSEEEEEEEECCCSSCCTTCCSEEEEEEEEEES
T ss_pred hccCceEEEecceecCCCCccccccceeEEEEEEec
Confidence 36789999999999999996 999999999999886
No 33
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=96.75 E-value=0.019 Score=56.50 Aligned_cols=105 Identities=19% Similarity=0.252 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccccCCCCCCCCCCCCCcccccc-ccccccccCchhhHHHH
Q psy7414 73 LCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSKNDCYYVN-REYLLRAHTTAHQSELI 151 (320)
Q Consensus 73 l~il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~L~~P~DHPsR~~~DTyYin-~~~lLRTHTSAhq~~~l 151 (320)
-..+++.|++++.+.+. ..| |..+.. |++....-|..- .|-..-..|-|.+. .++.||.=....-..++
T Consensus 171 ga~l~~~L~~~~~~~~~-~~G---y~ev~t--P~l~~~~l~~~s----G~~~~f~~emy~~~~~~l~LrPt~e~~i~~~~ 240 (425)
T 2dq3_A 171 GARLERALINFMLDLHT-KKG---YKEICP--PHLVKPEILIGT----GQLPKFEEDLYKCERDNLYLIPTAEVPLTNLY 240 (425)
T ss_dssp HHHHHHHHHHHHHHHHH-HTT---CEEEEC--CSEECHHHHHHH----SCTTTTGGGSCBCTTTCCEECSSTHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHH-HcC---CEEEEC--CccccHHHHHhc----CCCCcChhhheEecCCeEEEcCCCcHHHHHHH
Confidence 44577888887776554 446 877764 444222222221 11111112334443 35677763333333444
Q ss_pred Hc-------CCCeEEEecccccCCCc----C---CCCCCcceeeeEEEEe
Q psy7414 152 RM-------GLDNFVVFGDVYRRDQI----D---STHFPVFHQADGVHLL 187 (320)
Q Consensus 152 ~~-------~~~~~l~~GdVYRRDeI----D---~tHyPvFHQmEG~~v~ 187 (320)
++ .+-++...|.|||++.- | -.-+.+|+|+|+..+.
T Consensus 241 ~~~i~s~~~LPlrl~~~g~~FR~E~~~~Gr~~~Gl~R~reF~q~E~~~f~ 290 (425)
T 2dq3_A 241 REEILKEENLPIYLTAYTPCYRREAGAYGKDIRGIIRQHQFDKVELVKIV 290 (425)
T ss_dssp TTEEEETTTCCEEEEEEEEEECCCCSCCSSSCSSSSSCSEEEEEEEEEEE
T ss_pred HhhccccccCCeEEEEecCEecCCCCcccccccCcccccceEEeeEEEEC
Confidence 32 13488899999999862 1 0135589999997764
No 34
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=96.74 E-value=0.011 Score=59.21 Aligned_cols=55 Identities=16% Similarity=0.267 Sum_probs=39.3
Q ss_pred ccccccccccCchhhHHHHHcCCCeEEEecccccCCCcC-CCCCCcceeeeEEEEe
Q psy7414 133 VNREYLLRAHTTAHQSELIRMGLDNFVVFGDVYRRDQID-STHFPVFHQADGVHLL 187 (320)
Q Consensus 133 in~~~lLRTHTSAhq~~~l~~~~~~~l~~GdVYRRDeID-~tHyPvFHQmEG~~v~ 187 (320)
.++..-||.=.--+-..++..|.++++.+|.|||.+..+ ..|.|+|+|+|.-.-|
T Consensus 222 ~~~~~~L~~Spql~~k~l~~~g~~rvy~ig~~FR~E~~~~~Rh~pEFt~le~e~af 277 (487)
T 1eov_A 222 FKGKAYLAQSPQFNKQQLIVADFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAF 277 (487)
T ss_dssp TTEEEEECSCTHHHHHHHHHTTCCEEEEEEEEECCCCCCCTTCCSEEEEEEEEEEC
T ss_pred CCccEEcccChHHHHHHHHhcCCCceEEEeccEecCCCCCCccchhhhhhhhhhhh
Confidence 344555552111122345567889999999999999997 5999999999986544
No 35
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=96.50 E-value=0.018 Score=59.69 Aligned_cols=45 Identities=24% Similarity=0.313 Sum_probs=38.7
Q ss_pred CchhhH--HHHHcCCCeEEEecccccCCCcCCCCCCcceeeeEEEEe
Q psy7414 143 TTAHQS--ELIRMGLDNFVVFGDVYRRDQIDSTHFPVFHQADGVHLL 187 (320)
Q Consensus 143 TSAhq~--~~l~~~~~~~l~~GdVYRRDeID~tHyPvFHQmEG~~v~ 187 (320)
+|+-+. .+|..|.++++-+|.|||.+..+++|.|+|.|+|.-+.|
T Consensus 202 qSpql~kq~l~v~g~~rvfqi~~~FR~E~~~t~r~pEFt~lE~e~af 248 (617)
T 4ah6_A 202 QSPQQFKQLLMVGGLDRYFQVARCYRDEGSRPDRQPEFTQIDIEMSF 248 (617)
T ss_dssp SSTTHHHHHHHHTSCSEEEEEEEEECCCSSCSSSCSEEEEEEEEEES
T ss_pred cCHHHHHHHHHhcccCcEEEEEhheecccCCCCcCcceecceeeecC
Confidence 555333 456788999999999999999999999999999999886
No 36
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=96.38 E-value=0.01 Score=59.09 Aligned_cols=34 Identities=15% Similarity=0.217 Sum_probs=31.2
Q ss_pred CCCeEEEecccccCCCcC-CCCCCcceeeeEEEEe
Q psy7414 154 GLDNFVVFGDVYRRDQID-STHFPVFHQADGVHLL 187 (320)
Q Consensus 154 ~~~~~l~~GdVYRRDeID-~tHyPvFHQmEG~~v~ 187 (320)
+.++++-+|.|||.+.+| .+|.|+|.|+|.-+.|
T Consensus 220 g~~rVyeig~~FR~E~~~t~rH~pEFtmlE~e~af 254 (456)
T 3m4p_A 220 SLGKSFCMLSSYRAEQSRTVRHLAEYLHLEAELPF 254 (456)
T ss_dssp HHSSEEEEEEEECCCSCCCSSCCSEEEEEEEEEES
T ss_pred ccCcEEEEEhheecCCCCCCcchHHHHHhHHHHhc
Confidence 468999999999999987 6999999999999886
No 37
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=96.21 E-value=0.03 Score=57.23 Aligned_cols=52 Identities=17% Similarity=0.231 Sum_probs=39.3
Q ss_pred cccccccccCchhhH--HHHHcCCCeEEEecccccCCCcC-CCCCCcceeeeEEEEe
Q psy7414 134 NREYLLRAHTTAHQS--ELIRMGLDNFVVFGDVYRRDQID-STHFPVFHQADGVHLL 187 (320)
Q Consensus 134 n~~~lLRTHTSAhq~--~~l~~~~~~~l~~GdVYRRDeID-~tHyPvFHQmEG~~v~ 187 (320)
+...-|+ +|+-.. ++|..|.++++-+|.|||.+..+ .+|.|+|.|+|.-.-|
T Consensus 289 ~~~~yL~--~Spql~~k~ll~~g~~rVfeI~~~FR~E~~~t~RHl~EFtmlE~e~af 343 (548)
T 3i7f_A 289 DRKAYLA--QSPQLYKQMAIMGDFRKVFEVGPVFRAENSNTRRHLTEFEGLDIEMEI 343 (548)
T ss_dssp ---CCBC--SCTHHHHHHHHTTTCCEEEEEEEECCCSCCCSSSCCSCEEEEEEEEEC
T ss_pred CCceEec--cCHHHHHHHHHhcCcCcEEEEeeeEecCCCCCCCcchhhhchhhhhhh
Confidence 3444444 455443 56677899999999999999996 7999999999998775
No 38
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=95.85 E-value=0.0072 Score=64.10 Aligned_cols=124 Identities=17% Similarity=0.086 Sum_probs=82.8
Q ss_pred cccccccCchhhHHHHHc----CC--CeEEEecccccCCCcCCCCCCcceeeeEEEEeeccc--cccCccCcccccceec
Q psy7414 136 EYLLRAHTTAHQSELIRM----GL--DNFVVFGDVYRRDQIDSTHFPVFHQADGVHLLNRDQ--VSRGDIGVGTSLKIMT 207 (320)
Q Consensus 136 ~~lLRTHTSAhq~~~l~~----~~--~~~l~~GdVYRRDeID~tHyPvFHQmEG~~v~~~~~--l~~~~~~~~~~~~~~~ 207 (320)
..+|||---..-.+.++. +. -++|=+|+||+.|+-+.+...+..++=|+....... +..
T Consensus 541 ~svmRtsLlpgLL~~~~~N~~r~~~~v~lFEiG~Vf~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~------------- 607 (795)
T 3pco_B 541 MSAMRLSLWTGLLATVVYNQNRQQNRVRIFESGLRFVPDTQAPLGIRQDLMLAGVICGNRYEEHWNL------------- 607 (795)
T ss_dssp TCEECSSSHHHHHHHHHHHHTSSCCCCEEEEEEEEEEECTTSSTTEEEEEEEEEEEESBSSCSCSSS-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCccEEEeeeEEecCCCcccCcchhheEEEEEECCCccccccc-------------
Confidence 468999888777777642 22 378889999998764333444444444444321110 000
Q ss_pred ccCCCchhhhhhhhccccccccCcceeeeecCCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHhCCCccEEEeccCC
Q psy7414 208 IFTPTSQEYFYIKKCNKISESIGQNIVIFEQGGVHTDEKQARHTLDATKVMEQKLKNSLVKLAKILFGDDIQMRWISEYF 287 (320)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~q~~h~~~~~~~v~~~LK~tLe~lv~~lFg~~~~~Rw~~ayF 287 (320)
.+.... ..++|+.++.++..+ |....++|.++..
T Consensus 608 ---------------------~~~~~d------------------------F~dlKg~ve~ll~~l-g~~~~~~~~~~~~ 641 (795)
T 3pco_B 608 ---------------------AKETVD------------------------FYDLKGDLESVLDLT-GKLNEVEFRAEAN 641 (795)
T ss_dssp ---------------------CCCBCC------------------------HHHHHHHHHHHTTTS-SCCSSCCEECCCC
T ss_pred ---------------------CCCCCC------------------------HHHHHHHHHHHHHHc-CCCcceEEEECCC
Confidence 001111 368999999998875 5323678999999
Q ss_pred CCCCCceEEEeeeCCceEEEeecccccccccCC
Q psy7414 288 PFTHPSWELEILLNDKWVEILGCGVIRHEILDR 320 (320)
Q Consensus 288 PFTePS~EleV~~~g~WLEvLGCGvv~~~vL~~ 320 (320)
|+.+|+...+|+.+|+ +|+-.|.+||+|+++
T Consensus 642 ~~~hPGrsA~I~~~g~--~iG~~GelHP~v~~~ 672 (795)
T 3pco_B 642 PALHPGQSAAIYLKGE--RIGFVGVVHPELERK 672 (795)
T ss_dssp TTEEEEEEEEECTTTS--CCEEEEEECTTTTTT
T ss_pred CCCCCCCEEEEEECCE--EEEEEEEECHHHHHH
Confidence 9999999999999986 444469999999874
No 39
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=95.40 E-value=0.12 Score=50.70 Aligned_cols=105 Identities=14% Similarity=0.249 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccccCCCCCCCCCCCCCcccccc-ccccccccCchhhHHHH
Q psy7414 73 LCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSKNDCYYVN-REYLLRAHTTAHQSELI 151 (320)
Q Consensus 73 l~il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~L~~P~DHPsR~~~DTyYin-~~~lLRTHTSAhq~~~l 151 (320)
-..+.+.|++++.+.+. ..| |..+.. |++-...-|..=+ |-..-..+-|.+. +++.||.=..+....++
T Consensus 165 ga~l~~aL~~~~~~~~~-~~G---y~ev~t--P~l~~~~l~~~sG----~~~~f~~emy~~~d~~l~L~Pt~e~~~~~~~ 234 (421)
T 1ses_A 165 LALYELALLRFAMDFMA-RRG---FLPMTL--PSYAREKAFLGTG----HFPAYRDQVWAIAETDLYLTGTAEVVLNALH 234 (421)
T ss_dssp HHHHHHHHHHHHHHHHH-HTT---CEEEEC--CSEEEHHHHHHHT----CTTTTGGGSCBBTTSSEEECSSTHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHH-HcC---CEEEeC--CceecHHHHHhcC----CCCcCchhcEEEcCCeEEEeecCcHHHHHHh
Confidence 34577888888876654 346 877754 5542222222211 1111122333332 24455543233333444
Q ss_pred HcC-------CCeEEEecccccCCC----cCCC---CCCcceeeeEEEEe
Q psy7414 152 RMG-------LDNFVVFGDVYRRDQ----IDST---HFPVFHQADGVHLL 187 (320)
Q Consensus 152 ~~~-------~~~~l~~GdVYRRDe----ID~t---HyPvFHQmEG~~v~ 187 (320)
+.. +-++...|.|||++. -|.. -+-+|||+|++.+.
T Consensus 235 ~~~~~s~~~LPlr~~~~g~~FR~E~g~~Gr~~~GL~R~rqF~q~E~~~f~ 284 (421)
T 1ses_A 235 SGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLT 284 (421)
T ss_dssp TTCEEEGGGCSEEEEEEEEEECCCCSCCCSCCCTTSSCSEEEEEEEEEEE
T ss_pred cccccCchhCCEEEEecCCeecCCccccCcCCCCCeeeeeeeeeeEEEEe
Confidence 332 338888999999885 3322 45789999988774
No 40
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=94.77 E-value=0.17 Score=50.40 Aligned_cols=108 Identities=14% Similarity=0.139 Sum_probs=57.7
Q ss_pred CChH-HHHHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccccCCCCCCCCCCCCCcccccc-ccccccccCchhh
Q psy7414 70 YHPL-CMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSKNDCYYVN-REYLLRAHTTAHQ 147 (320)
Q Consensus 70 ~HPl-~il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~L~~P~DHPsR~~~DTyYin-~~~lLRTHTSAhq 147 (320)
.+|. ..+.+.|++++.+.+ ...| |..+.. |++-...-|..-+ |-..-..+-|.+. .++.||.=..+.-
T Consensus 188 ~~p~ga~l~~aL~~~~~~~~-~~~G---y~ev~t--P~l~~~~l~~~sG----~~~~f~~emy~~~d~~l~LrPt~e~~~ 257 (455)
T 2dq0_A 188 LLNEIVILDLALIRFALDRL-IEKG---FTPVIP--PYMVRRFVEEGST----SFEDFEDVIYKVEDEDLYLIPTAEHPL 257 (455)
T ss_dssp EEHHHHHHHHHHHHHHHHHH-HHTT---CEEEEC--CSEECHHHHHTTS----CTTHHHHTCCBBTTSSCEECSSTHHHH
T ss_pred ECCHHHHHHHHHHHHHHHHH-HHcC---CEEEeC--CcccCHHHHHhcC----CCCCChHhhCeecCCcEEEcCcCcHHH
Confidence 3444 447778888877655 3346 887764 4442222222111 1111111223332 3566776333333
Q ss_pred HHHHHc------C-CCeEEEecccccCCCcCC---C----CCCcceeeeEEEEe
Q psy7414 148 SELIRM------G-LDNFVVFGDVYRRDQIDS---T----HFPVFHQADGVHLL 187 (320)
Q Consensus 148 ~~~l~~------~-~~~~l~~GdVYRRDeID~---t----HyPvFHQmEG~~v~ 187 (320)
..++++ . +-++...|.|||++.--+ + -+-.|+|+|++..-
T Consensus 258 ~~~~~~~~~s~~~LPlr~~~~g~~FR~E~~~~G~~~~GL~R~rqF~kvE~~~f~ 311 (455)
T 2dq0_A 258 AGMHANEILDGKDLPLLYVGVSPCFRKEAGTAGKDTKGIFRVHQFHKVEQFVYS 311 (455)
T ss_dssp HHTTTTEEEETTTCSEEEEEEEEEECCCTTCSSCSCCSSSSCSEEEEEEEEEEE
T ss_pred HHHHHhCccCchhCCEEEEEecCcccCCCCccccccCCceeeeeeEeeeEEEec
Confidence 444432 1 238888999999986311 1 45689999999663
No 41
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Probab=94.52 E-value=0.1 Score=49.60 Aligned_cols=105 Identities=13% Similarity=0.128 Sum_probs=63.0
Q ss_pred CChHHHHHHHHHHHHhhcccCCCCCCceEEecCCCCeecceecccc-CCCCCCCCCCCCCccccc-c---ccccccccCc
Q psy7414 70 YHPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDS-LLVAKDHVSRSKNDCYYV-N---REYLLRAHTT 144 (320)
Q Consensus 70 ~HPl~il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~-L~~P~DHPsR~~~DTyYi-n---~~~lLRTHTS 144 (320)
......+.+.|++.|.+ .| |..+.. |++...+-|.. |+=--+.+..+ .|-+ + +...||...|
T Consensus 36 ~~~~~~i~~~i~~~~~~-----~G---y~eI~t--P~le~~el~~~s~~g~~~~~~~~---my~~~D~~g~~l~LRpd~T 102 (344)
T 1z7m_A 36 VKSLRQIEGRLRKLFSL-----KN---YQEVMP--PSFEYTQLYTALESNGKTFNQEK---MFQFIKHEGQSITLRYDFT 102 (344)
T ss_dssp HHHHHHHHHHHHHHHHH-----TT---CEECCC--CSEEEHHHHHHHHCSSSCCCTTS---CCEEECTTCCEEEECCCSH
T ss_pred HHHHHHHHHHHHHHHHH-----cC---CEEecC--cccCcHHHHhhccCCcccccccc---EEEEECCCCCEEecCCCCc
Confidence 34444555666666643 46 888864 66655545532 21112233332 2433 2 3579999999
Q ss_pred hhhHHHHHcC----CCeEEEecccccCCCcCCCCCCcceeeeEEEEe
Q psy7414 145 AHQSELIRMG----LDNFVVFGDVYRRDQIDSTHFPVFHQADGVHLL 187 (320)
Q Consensus 145 Ahq~~~l~~~----~~~~l~~GdVYRRDeID~tHyPvFHQmEG~~v~ 187 (320)
+.-++.+... +-++..+|.|||.+.....++-+|||+++=.+.
T Consensus 103 ~~~aR~~~~~~~~~P~rl~y~g~vfR~e~p~~gR~REF~Q~g~ei~g 149 (344)
T 1z7m_A 103 LPLVRLYSQIKDSTSARYSYFGKIFRKEKRHKGRSTENYQIGIELFG 149 (344)
T ss_dssp HHHHHHHHTCCSCCCEEEEEEEECCCCCC-------CCEEEEEEEES
T ss_pred HHHHHHHHhcCCCCCeEEEEECcEEccCCCCCCCcceeEEEEEEEEc
Confidence 9999988653 248999999999999889999999999776664
No 42
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens}
Probab=93.79 E-value=2.5 Score=42.24 Aligned_cols=99 Identities=13% Similarity=-0.013 Sum_probs=54.8
Q ss_pred CCChHHH-HHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccccCCCCCCCCCCCCCccccccccccccccCchhh
Q psy7414 69 KYHPLCM-LKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSKNDCYYVNREYLLRAHTTAHQ 147 (320)
Q Consensus 69 ~~HPl~i-l~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~L~~P~DHPsR~~~DTyYin~~~lLRTHTSAhq 147 (320)
-.||.+. ||..|++++.+.+....|. +..++ .|+ ..|.--..|..+=. ..||.=|....
T Consensus 98 ~~gP~G~~l~~nl~~~w~~~~~~~~~~--~~eV~--tp~-------~~~~~~SGH~d~~~---------~~LRPeTaqg~ 157 (459)
T 3ikl_A 98 GFGPLGVELRKNLAAEWWTSVVVFREQ--VFPVD--ALH-------HKPGPLLPGDSAFR---------GGLRENLLHGA 157 (459)
T ss_dssp CBCHHHHHHHHHHHHHHHHHHTTSSCS--CEECC--CCS-------BCCSCCCSSCSCCT---------TB-CSCSHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHHhhccCc--eEeec--ccc-------ccccccCcchhhhc---------ceECCCCChhH
Confidence 4577765 7888888676655433331 22222 233 33344444553322 67777666666
Q ss_pred HHHHHcC-------CC-eEEEecccccCCC--cCCCCC----CcceeeeEEEEe
Q psy7414 148 SELIRMG-------LD-NFVVFGDVYRRDQ--IDSTHF----PVFHQADGVHLL 187 (320)
Q Consensus 148 ~~~l~~~-------~~-~~l~~GdVYRRDe--ID~tHy----PvFHQmEG~~v~ 187 (320)
.-.+.+. ++ ++--+|.|||++. |-..|- -+|.|||+...-
T Consensus 158 ~~nfk~~~~s~r~~LP~~iaqig~~FR~E~g~~~~~~GL~RvrEFtq~E~~~F~ 211 (459)
T 3ikl_A 158 LEHYVNCLDLVNKRLPYGLAQIGVCFHPVFDTKQIRNGVKSIGEKTEASLVWFT 211 (459)
T ss_dssp HHHTTTTTGGGTTBSSEEEEEEEEEECCC----------CCCCEEEEEEEEEEE
T ss_pred HHHHhhhhhhccccCCeEEEEEeeeeecccccccCCCCcccccceeeeeEEEEe
Confidence 5555432 12 6777999999995 555554 689999998653
No 43
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}
Probab=93.35 E-value=0.76 Score=46.68 Aligned_cols=32 Identities=9% Similarity=0.181 Sum_probs=22.8
Q ss_pred CeEEEecccccCCCc----CC---CCCCcceeeeEEEEe
Q psy7414 156 DNFVVFGDVYRRDQI----DS---THFPVFHQADGVHLL 187 (320)
Q Consensus 156 ~~~l~~GdVYRRDeI----D~---tHyPvFHQmEG~~v~ 187 (320)
-++.-.|.|||++.= |. .-...|+|+|++.+-
T Consensus 292 lr~~~~s~cFR~Eags~GrdtrGL~RvhQF~kvE~~~f~ 330 (522)
T 3vbb_A 292 IKYAGLSTCFRQEVGSHGRDTRGIFRVHQFEKIEQFVYS 330 (522)
T ss_dssp EEEEEEEEEECSCCCC----CCCSSSCSEEEEEEEEEEE
T ss_pred eeEEEecccccCCCCcCCccCCCcceeeeeEEEEEEEEe
Confidence 378889999999862 10 123479999998764
No 44
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=93.12 E-value=0.18 Score=48.51 Aligned_cols=101 Identities=15% Similarity=0.112 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccccCCCCCCCCCCCCCcccccc----ccccccccCchhhH
Q psy7414 73 LCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSKNDCYYVN----REYLLRAHTTAHQS 148 (320)
Q Consensus 73 l~il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~L~~P~DHPsR~~~DTyYin----~~~lLRTHTSAhq~ 148 (320)
...+.+.|++.|.+ .| |..+.. |++...+-|-.- -++.. ..+.|-+. +...||.-.|+.-+
T Consensus 40 ~~~i~~~i~~~f~~-----~G---y~eI~t--P~le~~el~~~~---g~~~~--~~~my~~~D~~g~~l~LRpd~T~~~a 104 (373)
T 3rac_A 40 RRAVETRLLSFVED-----AG---YEPVTS--GLFEYVDTLLRA---RSPES--SRDWIRLFDGGGDAVALRPEMTPSIA 104 (373)
T ss_dssp HHHHHHHHHHHHHH-----TT---CEECCC--CSEEEHHHHHTT---SCTTS--CCCCCBCCCCSSSCEEECSSSHHHHH
T ss_pred HHHHHHHHHHHHHH-----cC---CeEEEC--CceeeHHHHhhc---CCccc--hhceEEEECCCCCEEEECCcCHHHHH
Confidence 34455555555543 46 888753 665444444321 13322 02334442 35799999999888
Q ss_pred HHHHc------CCCeEEEecccccCCCc------CCCCCCcceeeeEEEEee
Q psy7414 149 ELIRM------GLDNFVVFGDVYRRDQI------DSTHFPVFHQADGVHLLN 188 (320)
Q Consensus 149 ~~l~~------~~~~~l~~GdVYRRDeI------D~tHyPvFHQmEG~~v~~ 188 (320)
+.+.+ .+-++..+|.|||++.- ...++-+|||++.=.+..
T Consensus 105 R~~~~~~~~~~~P~r~~y~g~vfR~e~~g~~~~~~~gR~ReF~Q~g~ei~g~ 156 (373)
T 3rac_A 105 RMAAPRVAAGRTPIRWCYCERVYRRTDDPASLSWASGKAAESTQVGIERIGE 156 (373)
T ss_dssp HHHHHHHHTTCCCCEEEEEEEEEECC------------CEEEEEEEEEECSS
T ss_pred HHHHhccccCCCCeEEEEEcceEccCCCcccccccCCccceeEEeeeEEECC
Confidence 87743 23589999999999976 678899999986655543
No 45
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=92.80 E-value=0.21 Score=47.81 Aligned_cols=104 Identities=14% Similarity=0.131 Sum_probs=57.9
Q ss_pred HHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccccCCCCC--CCCCCCCCcccccc----ccccccccCchhhHH
Q psy7414 76 LKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAK--DHVSRSKNDCYYVN----REYLLRAHTTAHQSE 149 (320)
Q Consensus 76 l~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~L~~P~--DHPsR~~~DTyYin----~~~lLRTHTSAhq~~ 149 (320)
+++.|++++.+.+. +.| |..+.. |++....-| ... +|...-..+.|-+. +...||.-+++.-++
T Consensus 18 ~~~~i~~~~~~~~~-~~G---~~ei~t--P~l~~~~l~----~~~~g~~~~~~~~~m~~~~D~~g~~~~Lrp~~t~~~~r 87 (420)
T 1qe0_A 18 KWRYIENQLDELMT-FYN---YKEIRT--PIFESTDLF----ARGVGDSTDVVQKEMYTFKDKGDRSITLRPEGTAAVVR 87 (420)
T ss_dssp HHHHHHHHHHHHHH-HHT---CEECBC--CSEEEHHHH----CC-----------CCEEECHHHHCCEEECSCSHHHHHH
T ss_pred HHHHHHHHHHHHHH-HcC---CEEccC--cccchHHHh----hhccCCccchhhhheEEEEcCCCCEEEeCCCChHHHHH
Confidence 45555555544332 235 777764 555443333 222 33222222346563 468999998888888
Q ss_pred HHHc-------C-CCeEEEecccccCCCcCCCCCCcceeeeEEEEeec
Q psy7414 150 LIRM-------G-LDNFVVFGDVYRRDQIDSTHFPVFHQADGVHLLNR 189 (320)
Q Consensus 150 ~l~~-------~-~~~~l~~GdVYRRDeID~tHyPvFHQmEG~~v~~~ 189 (320)
.+.+ . +-++..+|.|||++.-...++-+|||+|+-.+...
T Consensus 88 ~~~~~~~~~~~~lP~r~~~~g~vfR~E~~~~gR~reF~q~~~e~~~~~ 135 (420)
T 1qe0_A 88 SYIEHKMQGNPNQPIKLYYNGPMFRYERKQKGRYRQFNQFGVEAIGAE 135 (420)
T ss_dssp HHHHTTGGGCSSCSEEEEEEEEEECC-------CCEEEEEEEEEESCC
T ss_pred HHHhccccccCCCCeEEEEecCEeecCCCcCCCcccEEEeeEEEECCC
Confidence 8752 1 23899999999999888889999999988777543
No 46
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=92.38 E-value=2.2 Score=43.05 Aligned_cols=105 Identities=13% Similarity=0.182 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccccCCCCCCCCCCCCCcccccc----ccccccccCchhhH
Q psy7414 73 LCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSKNDCYYVN----REYLLRAHTTAHQS 148 (320)
Q Consensus 73 l~il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~L~~P~DHPsR~~~DTyYin----~~~lLRTHTSAhq~ 148 (320)
...+.+.|++++.+.+. ..| |+.+.. |-+|.. .-+..=+ .+|.=..+|-|.+. .++.||. |+..-.
T Consensus 218 GarL~~aL~~~~~d~~~-~~G---y~eV~~-P~lv~~-~l~~~sG---~~~~f~e~emf~v~~~~~~~l~L~P-TaE~~~ 287 (501)
T 1wle_A 218 GALLQHGLVNFTLNKLI-HRG---FTPMTV-PDLLRG-VVFEGCG---MTPNAKPSQIYNIDPSRFEDLNLAG-TAEVGL 287 (501)
T ss_dssp HHHHHHHHHHHHHHHHH-HTT---CEEEEC-CSEECH-HHHHHHT---CCSSSSSCSSCBBCTTTSSSCEECS-SHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HcC---CEEEeC-CccccH-HHHHhhc---CCCccCccccEEEecCCCCeEEECC-cCcHHH
Confidence 34577778888776554 346 877653 333321 1111111 01110112344443 2456665 444444
Q ss_pred HHHHcC--------CCeEEEecccccCCCc---C---CCCCCcceeeeEEEEe
Q psy7414 149 ELIRMG--------LDNFVVFGDVYRRDQI---D---STHFPVFHQADGVHLL 187 (320)
Q Consensus 149 ~~l~~~--------~~~~l~~GdVYRRDeI---D---~tHyPvFHQmEG~~v~ 187 (320)
-.|.+. +-++.-.|.|||++.= | -.=.-.|.|+|++.+-
T Consensus 288 ~~l~~~~i~s~~~LPlrl~~~s~~FR~Ea~~G~d~~GL~RvhqF~kvE~~~f~ 340 (501)
T 1wle_A 288 AGYFMDHSVAFRDLPIRMVCSSTCYRAETDTGKEPWGLYRVHHFTKVEMFGVT 340 (501)
T ss_dssp HHHHTTEEEEGGGCSEEEEEEEEEECCCCSCC--CCSSSSCSEEEEEEEEEEE
T ss_pred HHHHhhccCCcccCCeeEEeccCcccCCCCCCCCCcCceeeeeeeeeeEEEEe
Confidence 333222 2378889999998853 1 0112569999998884
No 47
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=91.48 E-value=0.21 Score=49.20 Aligned_cols=52 Identities=17% Similarity=0.087 Sum_probs=37.7
Q ss_pred cccccccCchhhHHHHHcC------CCeEEEecccccCCCcCCCCCCcceeeeEEEEe
Q psy7414 136 EYLLRAHTTAHQSELIRMG------LDNFVVFGDVYRRDQIDSTHFPVFHQADGVHLL 187 (320)
Q Consensus 136 ~~lLRTHTSAhq~~~l~~~------~~~~l~~GdVYRRDeID~tHyPvFHQmEG~~v~ 187 (320)
...||.-.|+.-+|.+.+. +-++..+|.|||.+.-...++-+|||++.=.+.
T Consensus 95 ~l~LRpd~T~~~aR~~~~~~~~~~~p~r~~y~g~vfR~e~~~~gr~Ref~Q~g~ei~G 152 (465)
T 3net_A 95 ARALKFDQTVPLAAYIARHLNDLTFPFARYQMDVVFRGERAKDGRFRQFRQCDIDVVG 152 (465)
T ss_dssp CEEECSCSHHHHHHHHHHHGGGSCSSEEEEECCEEECBC------CCEEEEEEEEEEC
T ss_pred EEEeCCCChHHHHHHHHhcccccCCCeEEEEeccEEecCCCCCCCcceeEEeeEEEEC
Confidence 4789999999988887432 238999999999998889999999999666554
No 48
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A*
Probab=91.40 E-value=0.86 Score=44.11 Aligned_cols=113 Identities=15% Similarity=0.125 Sum_probs=64.2
Q ss_pred CCChHHHHHHHHHHHHhhcccCCCCCCceEEecCCCCeecc--------eeccccCCCCCCCC-----------------
Q psy7414 69 KYHPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTV--------EENFDSLLVAKDHV----------------- 123 (320)
Q Consensus 69 ~~HPl~il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~--------~~NFD~L~~P~DHP----------------- 123 (320)
-.-....|.+.|++++.+ .. ..| |+.+.. |+++.. +.||-.+.+...-.
T Consensus 59 ~~g~~a~L~~aLe~~~~~-~~-~~G---y~ev~~-P~lv~~~~~e~SGhl~~F~e~mf~v~~~~~d~~e~~~ll~~~~~~ 132 (346)
T 3mf2_A 59 RTALYESIVERLAALITS-HR-EAG---TEALRF-PPVMSRAQLEKSGYLKSFPNLLGCVCGLHGTEREINAAVSRFDAG 132 (346)
T ss_dssp EEHHHHHHHHHHHHHHHH-TC-CTT---CEEEEC-CSEEEHHHHHHTTHHHHCGGGCEEEEEECSCHHHHHHHHHHHHTT
T ss_pred ecchHHHHHHHHHHHHHh-hH-hcC---CeEEEC-CCccCHHHHHhcCCcccChhhcceeecccccchhhhhhhhhhccc
Confidence 344567788999998876 32 335 888865 777732 35887766543110
Q ss_pred ----CCCCCccccccccccccccCchhhHH-HHHcCCCeEEEecccccCCCc-CCCCCCcceeeeEEEEee
Q psy7414 124 ----SRSKNDCYYVNREYLLRAHTTAHQSE-LIRMGLDNFVVFGDVYRRDQI-DSTHFPVFHQADGVHLLN 188 (320)
Q Consensus 124 ----sR~~~DTyYin~~~lLRTHTSAhq~~-~l~~~~~~~l~~GdVYRRDeI-D~tHyPvFHQmEG~~v~~ 188 (320)
.--..+.|||....+. .||--+.-+ .+....-++...|.|||++.- .-...-.|+|.|.+.+-+
T Consensus 133 ~~~~~~l~~~d~~LiPtacv-pl~~~~~~eg~i~~~plr~~~~g~CFR~EaS~GL~RvhqF~kvE~v~~~t 202 (346)
T 3mf2_A 133 GDWTTSLSPADLVLSPAACY-PVYPIAASRGPLPKGGLRFDVAADCFRREPSKHLDRLQSFRMREYVCIGT 202 (346)
T ss_dssp SCGGGGEEEEEEEECSSSST-THHHHHHTTCSCCTTCEEEEEEEEEECCCCCSSTTSCSEEEEEEEEEEES
T ss_pred cccccccCCCCEEEcccccH-HHHHHHccCCcccccCeEEEEECCccCCcCCCCCeeeeeeEEEEEEEEeC
Confidence 0011234666543211 111111111 111112367779999999982 225567899999998853
No 49
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=91.31 E-value=1.6 Score=43.53 Aligned_cols=107 Identities=13% Similarity=0.236 Sum_probs=62.1
Q ss_pred CChHH-HHHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccccCCCCCCCCCCCCCccccc--------ccccccc
Q psy7414 70 YHPLC-MLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSKNDCYYV--------NREYLLR 140 (320)
Q Consensus 70 ~HPl~-il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~L~~P~DHPsR~~~DTyYi--------n~~~lLR 140 (320)
..|.+ .+++.|++++.+.+ .. | |..+.. |++....-|.. -..|...-..+-|.+ ++.+.||
T Consensus 66 ~~P~g~~l~~~i~~~~~~~~-~~-G---~~ei~t--P~l~~~~l~~~---~sG~~~~f~~emy~~~d~g~~~~~~~l~Lr 135 (501)
T 1nj1_A 66 WMPHGFMIRKNTLKILRRIL-DR-D---HEEVLF--PLLVPEDELAK---EAIHVKGFEDEVYWVTHGGLSKLQRKLALR 135 (501)
T ss_dssp ECHHHHHHHHHHHHHHHHHH-TT-T---CEECCC--CSEEEHHHHTT---SHHHHHHTTTTCCEEEEETTEEEEEEEEEC
T ss_pred ECccHHHHHHHHHHHHHHHH-Hc-C---CEEEec--CcEecHHHHhc---ccCCcccCCcceEEEecCCCcccCCeeEEc
Confidence 35654 47888888887766 34 6 887764 44422221111 000100001122333 2357888
Q ss_pred ccCchhhHHHHHcC-------CCeEEEecccccCCCcCCCC----CCcce-eeeEEEEe
Q psy7414 141 AHTTAHQSELIRMG-------LDNFVVFGDVYRRDQIDSTH----FPVFH-QADGVHLL 187 (320)
Q Consensus 141 THTSAhq~~~l~~~-------~~~~l~~GdVYRRDeID~tH----yPvFH-QmEG~~v~ 187 (320)
.=+.+.-.+++++. +-++...|.|||.+.-| ++ +-+|| |+|+-.++
T Consensus 136 Pt~e~~i~~~~~~~~~s~~~LPlr~~q~g~~fR~E~~~-~rGl~R~REF~~q~e~~~~~ 193 (501)
T 1nj1_A 136 PTSETVMYPMFALWVRSHTDLPMRFYQVVNTFRYETKH-TRPLIRVREITTFKEAHTIH 193 (501)
T ss_dssp SSSHHHHHHHHHHHCCBTTTCCEEEEEEEEEECCCCSC-CBTTTBCSEEEEEEEEEEEE
T ss_pred cCCCHHHHHHHHhhhcccccCCEEEEeecCEeeCCCCC-CCCCceeEEEeeeeeEEEEE
Confidence 76666666766532 23888899999999743 43 34899 99997664
No 50
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans}
Probab=91.12 E-value=0.27 Score=47.76 Aligned_cols=106 Identities=17% Similarity=0.187 Sum_probs=64.4
Q ss_pred CChHH-HHHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccccCCCCCCCCCCCCCcccccc----ccccccccCc
Q psy7414 70 YHPLC-MLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSKNDCYYVN----REYLLRAHTT 144 (320)
Q Consensus 70 ~HPl~-il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~L~~P~DHPsR~~~DTyYin----~~~lLRTHTS 144 (320)
.+|-. .+++.|++.+.+.+. +.| |..+.. |++...+.|-.-+ ++... ..|-+. +...||.-.|
T Consensus 19 ~lP~~~~~~~~i~~~l~~~~~-~~G---y~eI~t--P~lE~~el~~~~g---~~~~~---~my~f~D~~g~~l~LRpd~T 86 (400)
T 3od1_A 19 TLPEWYKTKKNICDQMTEEIN-LWG---YDMIET--PTLEYYETVGVVS---AILDQ---QLFKLLDQQGNTLVLRPDMT 86 (400)
T ss_dssp BCHHHHHHHHHHHHHHHHHHH-HTT---CEECBC--CSEEETTTHHHHS---SSCGG---GSCEEECTTSCEEEECSCSH
T ss_pred cCHHHHHHHHHHHHHHHHHHH-HcC---CEEEeC--CccccHHHHhhcC---Ccccc---ceEEEECCCCCEEEECCCCH
Confidence 44443 344555544433322 246 887764 6654444443221 33322 234442 3579999999
Q ss_pred hhhHHHHHcC------CCeEEEecccccCCCcCCCCCCcceeeeEEEEe
Q psy7414 145 AHQSELIRMG------LDNFVVFGDVYRRDQIDSTHFPVFHQADGVHLL 187 (320)
Q Consensus 145 Ahq~~~l~~~------~~~~l~~GdVYRRDeID~tHyPvFHQmEG~~v~ 187 (320)
+.-++.+.+. +-++..+|.|||.+.-...++-+|||++.=.+.
T Consensus 87 ~~~aR~~~~~~~~~~~P~r~~y~g~vfR~e~~~~gR~Ref~Q~g~ei~G 135 (400)
T 3od1_A 87 APIARLVASSLKDRAYPLRLAYQSNVYRAQQNEGGKPAEFEQLGVELIG 135 (400)
T ss_dssp HHHHHHHHHHCSSSCSCEEEEEEEEEECCCC---CCCSEEEEEEEEEES
T ss_pred HHHHHHHHhhcccCCCCeEEEEEcCEEeCCCCCCCCCCccEEeEEEEEC
Confidence 9888887532 238999999999998888899999998666554
No 51
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Probab=90.55 E-value=0.98 Score=45.77 Aligned_cols=113 Identities=12% Similarity=0.010 Sum_probs=61.4
Q ss_pred CChHH-HHHHHHHHHHhhcccCCCCCCceEEecCCCCeec--------ceeccccCCCCCCCCC-CCCCc-----ccc--
Q psy7414 70 YHPLC-MLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVT--------VEENFDSLLVAKDHVS-RSKND-----CYY-- 132 (320)
Q Consensus 70 ~HPl~-il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs--------~~~NFD~L~~P~DHPs-R~~~D-----TyY-- 132 (320)
..|.+ .+++.|++++.+.+....| |..+.. |.++. -+.+|....+.-.+.. |+..+ .++
T Consensus 226 ~~P~G~~L~~~L~~~~~~e~~~~~G---~~EV~t-P~L~~~el~~~SGh~~~F~demy~v~~~~~Rd~~~~e~~~~~~~~ 301 (522)
T 2cja_A 226 HGPQSARIFRTFEKIVLEELLEPLG---YREMIF-PKLVTWEVWMKSGHAKGVYPEIYYVCPPQTRDPDYWEEVADYYKV 301 (522)
T ss_dssp ECHHHHHHHHHHHHHHHHHTHHHHT---CEECBC-CSEEEHHHHHHHTGGGTCGGGCCEEECBSCCCHHHHHHHHHHHHH
T ss_pred ECchHHHHHHHHHHHHHHHHHHHcC---CEEEEC-CCcccHHHHhhcCCcCccccceeeeecCCccchhhhhhhhhhhhc
Confidence 34554 4788888887754223345 777764 43432 1346665555432222 21000 000
Q ss_pred -------------ccccccccccCchhhHHHHHcC-------CCeEEE-ecccccCCCcCC----CCCCcceeeeEEEEe
Q psy7414 133 -------------VNREYLLRAHTTAHQSELIRMG-------LDNFVV-FGDVYRRDQIDS----THFPVFHQADGVHLL 187 (320)
Q Consensus 133 -------------in~~~lLRTHTSAhq~~~l~~~-------~~~~l~-~GdVYRRDeID~----tHyPvFHQmEG~~v~ 187 (320)
=+.++.||.=+.......+++. +-++.- .|.|||++ .=+ .-+-+|+|+|+..+.
T Consensus 302 ~~~~~~~~~~~~~~~~~l~LrPt~e~~i~~~f~~~i~s~~~LPlrl~q~ig~~FR~E-pgs~~GL~R~REF~q~E~~~F~ 380 (522)
T 2cja_A 302 THEVPTKLIKEKIAEPIGGMCYAQCPPFWMYVAGETLPNEEIPVKVFDRSGTSHRYE-SGGIHGIERVDEFHRIEIVWIG 380 (522)
T ss_dssp HSSCCHHHHHHHBCCCCEEECSSSSGGGGGGTTTCEECGGGCSEEEEECSSEEECCC-SSSCCCTTSCSEEEEEEEEEEE
T ss_pred cccccccccccccCCCcEEEccCCcHHHHHHHHhcccccccCCeeEEEEcCceEeCC-CCCCCCCeEeEEEEEeeEEEEe
Confidence 0234567753333344444322 237888 99999999 331 246789999999874
No 52
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=89.48 E-value=0.48 Score=46.79 Aligned_cols=52 Identities=13% Similarity=0.028 Sum_probs=39.3
Q ss_pred cccccccCchhhHHHHHcC------CCeEEEecccccCCCcCCCCCCcceeeeEEEEe
Q psy7414 136 EYLLRAHTTAHQSELIRMG------LDNFVVFGDVYRRDQIDSTHFPVFHQADGVHLL 187 (320)
Q Consensus 136 ~~lLRTHTSAhq~~~l~~~------~~~~l~~GdVYRRDeID~tHyPvFHQmEG~~v~ 187 (320)
...||.-.|+.-++.+.+. +-++..+|.|||.+.-...++-+|||++.=.+.
T Consensus 98 ~l~LRpd~T~~~aR~~~~~~~~~~~P~r~~y~g~vfR~e~~~~gR~ReF~Q~g~ei~G 155 (456)
T 3lc0_A 98 RVALRPEMTPSLARLLLGKGRSLLLPAKWYSIPQCWRYEAITRGRRREHYQWNMDIVG 155 (456)
T ss_dssp EEEECSCSHHHHHHHHHHSCTTCCSSEEEEECCEEECCCC-----CCEEEEEEEEEES
T ss_pred EEecCCcCHHHHHHHHHhcCcccCCCEEEEEeccEEecCCCCCCCccceEEEEEEEEc
Confidence 5799999999999988543 238999999999998888999999999766664
No 53
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Probab=89.12 E-value=0.64 Score=44.48 Aligned_cols=53 Identities=21% Similarity=0.210 Sum_probs=41.3
Q ss_pred ccccccccCchhhHHHHHcC-------CCeEEEecccccCCCcCCCCCCcceeeeEEEEe
Q psy7414 135 REYLLRAHTTAHQSELIRMG-------LDNFVVFGDVYRRDQIDSTHFPVFHQADGVHLL 187 (320)
Q Consensus 135 ~~~lLRTHTSAhq~~~l~~~-------~~~~l~~GdVYRRDeID~tHyPvFHQmEG~~v~ 187 (320)
+..+||.-.++.-++.+.+. +-++..+|.|||.+.-...++-+|||.+.=.+.
T Consensus 74 ~~l~Lrpd~t~~~ar~~~~~~~~~~~lP~rl~~~g~vfR~e~p~~gR~REf~Q~g~e~~g 133 (421)
T 1h4v_B 74 RSLTLRPEGTAAMVRAYLEHGMKVWPQPVRLWMAGPMFRAERPQKGRYRQFHQVNYEALG 133 (421)
T ss_pred CEEeeCCcchHHHHHHHHhccccccCCCeEEEEecCeecCCCCCCCCcccEEEccEEEEC
Confidence 46899998888888877422 238999999999998778889999986554443
No 54
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=88.76 E-value=1.9 Score=43.78 Aligned_cols=99 Identities=11% Similarity=0.151 Sum_probs=53.9
Q ss_pred CChH-HHHHHHHHHHHhhcccCCCCCCceEEecCCCCeec--------ceeccccCCCCCCCCCCCCCcccccc-ccccc
Q psy7414 70 YHPL-CMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVT--------VEENFDSLLVAKDHVSRSKNDCYYVN-REYLL 139 (320)
Q Consensus 70 ~HPl-~il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs--------~~~NFD~L~~P~DHPsR~~~DTyYin-~~~lL 139 (320)
.+|. ..+.+.|.+++.+.+. ..| |..+.. |-++. -+.+|.. |-|.+. .++.|
T Consensus 270 ~~p~Ga~l~~aL~~~~~~~~~-~~G---y~ev~~-P~lv~~~l~~~sG~~~~f~e-------------~mf~~~~~~~~L 331 (536)
T 3err_A 270 LKGDLALYELALLRFAMDFMA-RRG---FLPMTL-PSYAREKAFLGTGHFPAYRD-------------QVWAIAETDLYL 331 (536)
T ss_dssp EEHHHHHHHHHHHHHHHHHHH-HTT---CEEEEC-CSEEEHHHHHHHTCTTTTGG-------------GCCEETTTTEEE
T ss_pred EcCHHHHHHHHHHHHHHHHHH-HcC---CEEEec-cccccHHHHHhcCCcccChh-------------hceEecCCCEEE
Confidence 3554 5577888888876554 346 887754 33331 2235543 233332 23334
Q ss_pred cccCchhhH-HHHHc-------CCCeEEEecccccCCCc----C---CCCCCcceeeeEEEEe
Q psy7414 140 RAHTTAHQS-ELIRM-------GLDNFVVFGDVYRRDQI----D---STHFPVFHQADGVHLL 187 (320)
Q Consensus 140 RTHTSAhq~-~~l~~-------~~~~~l~~GdVYRRDeI----D---~tHyPvFHQmEG~~v~ 187 (320)
+. |+.... .+++. -+-++.-.|.+||++.= | -.-...|+|+|++..-
T Consensus 332 ~P-T~E~~~~~l~~~~i~s~~~LPlr~~~~~~~fR~E~gs~Gr~~~GL~RvrqF~k~e~~~f~ 393 (536)
T 3err_A 332 TG-TAEVVLNALHSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLT 393 (536)
T ss_dssp CS-STHHHHHHHTTTCEEEGGGCSEEEEEEEEEECCCTTCTTSSCSTTSSCSEEEEEEEEEEE
T ss_pred cc-CCcHHHHHHHhcccccHhhCCeeEEEecccccCCccccCCCCCCceeeeeeEEEEEEEEE
Confidence 32 222222 22222 12378889999998751 2 1244579999999764
No 55
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=87.48 E-value=8.5 Score=38.40 Aligned_cols=107 Identities=21% Similarity=0.255 Sum_probs=60.1
Q ss_pred CChHH-HHHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccccCCCCCCCCCCCCCccccc----cccccccccCc
Q psy7414 70 YHPLC-MLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSKNDCYYV----NREYLLRAHTT 144 (320)
Q Consensus 70 ~HPl~-il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~L~~P~DHPsR~~~DTyYi----n~~~lLRTHTS 144 (320)
.+|.+ .+++.|++++.+.+. +.| |..+.. |++....-|..=+- -|+.+ .+-|-+ ++.+.||.=++
T Consensus 42 ~lP~g~~~~~~i~~~~~~~~~-~~G---~~ei~t--P~l~~~~l~~~sG~-~~~~~---~~m~~~~d~~~~~~~LrP~~~ 111 (572)
T 2j3l_A 42 YLPLANRVLEKLKTIMREEFE-KID---AVEMLM--PALLPAELWKESGR-YETYG---PNLYRLKDRNDRDYILGPTHE 111 (572)
T ss_dssp ECHHHHHHHHHHHHHHHHHHH-TTT---CEECBC--CSEEETHHHHHHSH-HHHSC---TTSCEEECTTCCEEEECSCCH
T ss_pred eCCHHHHHHHHHHHHHHHHHH-HcC---CEEEEC--CccccHHHHHhcCC-ccccc---hheEEEecCCCCeEEEccccH
Confidence 45654 467777777766553 446 887764 44422211210000 00000 011222 24577887666
Q ss_pred hhhHHHHHcC-------CCeEEEecccccCCCcCCCC----CCcceeeeEEEEe
Q psy7414 145 AHQSELIRMG-------LDNFVVFGDVYRRDQIDSTH----FPVFHQADGVHLL 187 (320)
Q Consensus 145 Ahq~~~l~~~-------~~~~l~~GdVYRRDeID~tH----yPvFHQmEG~~v~ 187 (320)
+.-.+++++. +-++...|.|||++.- -.+ +-+|||+|+-.+.
T Consensus 112 ~~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~-~~~Gl~R~ReF~q~d~~~f~ 164 (572)
T 2j3l_A 112 ETFTELIRDEINSYKRLPLNLYQIQTKYRDEKR-SRSGLLRGREFIMKDGYSFH 164 (572)
T ss_dssp HHHHHHHHHHCCBGGGCCEEEEEEEEEECCCSS-CCTGGGSCSEEEEEEEEEEE
T ss_pred HHHHHHHHhhccChhhcCHhhheecCeeccCcC-cccCccccceeEEeeeEEEc
Confidence 6656666432 2388899999998853 233 6899999987774
No 56
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=87.25 E-value=3.7 Score=41.34 Aligned_cols=96 Identities=18% Similarity=0.250 Sum_probs=53.2
Q ss_pred ChHH-HHHHHHHHHHhhcccCCCCCCceEEecCCCCeecc--------eeccccCCCCCCCCCCCCCcccccc----ccc
Q psy7414 71 HPLC-MLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTV--------EENFDSLLVAKDHVSRSKNDCYYVN----REY 137 (320)
Q Consensus 71 HPl~-il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~--------~~NFD~L~~P~DHPsR~~~DTyYin----~~~ 137 (320)
+|.+ .+.+.|.+++...+. ..| |..+.. |-+|.. +..|+. |-|.+. +-+
T Consensus 181 ~p~GarL~~aL~~~~~d~~~-~~G---y~eV~~-P~lv~~~l~~~sG~l~~f~e-------------emf~v~~~~~~~~ 242 (485)
T 3qne_A 181 RNYGVFLNQALINYGLSFLS-SKG---YVPLQA-PVMMNKEVMAKTAQLSQFDE-------------ELYKVIDGEDEKY 242 (485)
T ss_dssp CTHHHHHHHHHHHHHHHHHH-TTT---CEEEEC-CSEEEHHHHHHHSCHHHHTT-------------TCCEEEETTEEEE
T ss_pred ecHHHHHHHHHHHHHHHHHH-HcC---CEEEeC-CccccHHHHhhcCCcccccc-------------ceEEEeCCCCeEE
Confidence 4444 466668888876543 346 887754 333321 234432 223332 123
Q ss_pred cccccCchhhHHHHHc---------CCCeEEEecccccCCCc---------CCCCCCcceeeeEEEEe
Q psy7414 138 LLRAHTTAHQSELIRM---------GLDNFVVFGDVYRRDQI---------DSTHFPVFHQADGVHLL 187 (320)
Q Consensus 138 lLRTHTSAhq~~~l~~---------~~~~~l~~GdVYRRDeI---------D~tHyPvFHQmEG~~v~ 187 (320)
|+.|+..+.- .+++. -+-++.-.|.|||++.= =+. .+|+|+|++.+-
T Consensus 243 LipTaE~pl~-~l~~~ei~~S~y~dLPlr~~~~s~cfR~Eag~~Grdt~GL~Rv--hqF~kvE~~~f~ 307 (485)
T 3qne_A 243 LIATSEQPIS-AYHAGEWFESPAEQLPVRYAGYSSCFRREAGSHGKDAWGIFRV--HAFEKIEQFVLT 307 (485)
T ss_dssp ECSSTHHHHH-HHTTTCEESSHHHHCCEEEEEEEEEECSCCC-----CCSSSSC--SEEEEEEEEEEE
T ss_pred EeccccHHHH-HHHhccccccchhcCCeeEEEecccccCCCCCCCccCCCceee--eeeeeeeEEEEe
Confidence 5556654432 22221 13378889999998752 233 479999999773
No 57
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Probab=86.05 E-value=6.8 Score=39.04 Aligned_cols=111 Identities=13% Similarity=0.117 Sum_probs=69.8
Q ss_pred cccccccCchhh----HHHHHc---CC-CeEEEecccccCCCcCCCC----CCcceeeeEEEEeeccccccCccCccccc
Q psy7414 136 EYLLRAHTTAHQ----SELIRM---GL-DNFVVFGDVYRRDQIDSTH----FPVFHQADGVHLLNRDQVSRGDIGVGTSL 203 (320)
Q Consensus 136 ~~lLRTHTSAhq----~~~l~~---~~-~~~l~~GdVYRRDeID~tH----yPvFHQmEG~~v~~~~~l~~~~~~~~~~~ 203 (320)
...||.=|++.. .+.+.+ .+ -++.-+|.+||++. -..| +-+|||+|+- ++...+
T Consensus 182 ~~~LRPE~t~~i~~~~~~~~~sy~r~LP~rl~qig~~FR~E~-~pr~GL~R~REF~q~d~~-~f~~~e------------ 247 (505)
T 1ati_A 182 LAYLRPETAQGIFVNFKNVLDATSRKLGFGIAQIGKAFRNEI-TPRNFIFRVREFEQMEIE-YFVRPG------------ 247 (505)
T ss_dssp EEEECSSSHHHHHHTHHHHHHHHTCCSSEEEEEEEEEEBCCS-SCCTGGGSCSEEEEEEEE-EEECGG------------
T ss_pred ceeecccchhHHHHHHHHHHHhcCCCCCEEEEEeeceeeCCC-CCCCCCCcccceEEeeEE-EEECHH------------
Confidence 457888777777 455543 23 37888999999983 2443 4679999999 542110
Q ss_pred ceecccCCCchhhhhhhhccccccccCcceeeeecCCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHhCC-CccEEE
Q psy7414 204 KIMTIFTPTSQEYFYIKKCNKISESIGQNIVIFEQGGVHTDEKQARHTLDATKVMEQKLKNSLVKLAKILFGD-DIQMRW 282 (320)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~q~~h~~~~~~~v~~~LK~tLe~lv~~lFg~-~~~~Rw 282 (320)
.+......+......+... ||- ...++.
T Consensus 248 --------------------------------------------------~~~~~~~~~i~~~~~i~~~-LGl~~~~v~~ 276 (505)
T 1ati_A 248 --------------------------------------------------EDEYWHRYWVEERLKWWQE-MGLSRENLVP 276 (505)
T ss_dssp --------------------------------------------------GHHHHHHHHHHHHHHHHHH-TTCCGGGEEE
T ss_pred --------------------------------------------------HHHHHHHHHHHHHHHHHHH-cCCCeEEEEE
Confidence 0000113344444455544 463 245676
Q ss_pred ec---cCCC-CCCCceEEEeeeCCceEEEeecc
Q psy7414 283 IS---EYFP-FTHPSWELEILLNDKWVEILGCG 311 (320)
Q Consensus 283 ~~---ayFP-FTePS~EleV~~~g~WLEvLGCG 311 (320)
.. .-+. +..-.|.+|++...+|.|+-||.
T Consensus 277 ~~~~~~~~~~~~~~~~d~E~~~p~~~~e~~g~~ 309 (505)
T 1ati_A 277 YQQPPESSAHYAKATVDILYRFPHGSLELEGIA 309 (505)
T ss_dssp EECCTTTSCTTCSEEEEEEEEETTEEEEEEEEE
T ss_pred CCCChHhhhcccHHHHhHHhhcCCCCccchhhh
Confidence 54 4455 55666889999999999999986
No 58
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=85.48 E-value=0.45 Score=47.01 Aligned_cols=53 Identities=21% Similarity=0.298 Sum_probs=40.2
Q ss_pred ccccccccCchhhHHHHHcC------CCeEEEecccccCCCcCCCCCCcceeeeEEEEee
Q psy7414 135 REYLLRAHTTAHQSELIRMG------LDNFVVFGDVYRRDQIDSTHFPVFHQADGVHLLN 188 (320)
Q Consensus 135 ~~~lLRTHTSAhq~~~l~~~------~~~~l~~GdVYRRDeID~tHyPvFHQmEG~~v~~ 188 (320)
+.+.||.-.++.-++++.+. +-++...|.|||++.-.+..+-.|||.+ +.++.
T Consensus 104 ~~l~LRPd~t~~~ar~~~~~~~~~~lP~r~~~~g~vfR~E~~~~gR~ReF~Q~d-~ei~g 162 (467)
T 4e51_A 104 ENLTLRPENTAAVVRAAIEHNMLYDGPKRLWYIGPMFRHERPQRGRYRQFHQVG-VEALG 162 (467)
T ss_dssp CEEEECSCSHHHHHHHHHHTTTTTTSCEEEEEEEEEECCCCC---CCSEEEEEE-EEEET
T ss_pred CEEEeCcccHHHHHHHHHHcccccCCCEEEEEEccEEccCCCCCCCcCceEEEE-EEEEe
Confidence 35789999898888887532 2489999999999988888999999986 55553
No 59
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=84.56 E-value=5.5 Score=40.05 Aligned_cols=102 Identities=13% Similarity=0.182 Sum_probs=55.3
Q ss_pred ChH-HHHHHHHHHHHhhcccCCCCCCceEEecCCCCeec--------ceeccccCCCCCCCCCCCCCccccccccccccc
Q psy7414 71 HPL-CMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVT--------VEENFDSLLVAKDHVSRSKNDCYYVNREYLLRA 141 (320)
Q Consensus 71 HPl-~il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs--------~~~NFD~L~~P~DHPsR~~~DTyYin~~~lLRT 141 (320)
+|. ..+...|++|+...+. ..| |..+.. |-+|. -+..|..=.|.-.. ..+.|||- -|
T Consensus 204 ~p~GarL~~aL~~f~~d~~~-~~G---y~eV~~-P~lv~~~l~~~sG~~~~f~e~mf~v~~----~~~~~~L~-----PT 269 (484)
T 3lss_A 204 KGGLVQLQVALVSYSLDFLV-KRG---YTPFYP-PFFLNRDVMGEVAQLSQFDEELYQVSG----DGDKKYLI-----AT 269 (484)
T ss_dssp EHHHHHHHHHHHHHHHHHHH-TTT---CEEEEC-CSEEEHHHHHHHSCHHHHHHTCCEEES----SSSCEEEC-----SS
T ss_pred CCHHHHHHHHHHHHHHHHHH-HcC---CEEEec-CccccHHHHHhcCCcccccccceEeec----CCcceEEe-----cc
Confidence 454 4578888888876554 346 887754 33331 13455443332111 02345543 34
Q ss_pred cCchhhHHHHHcC-------CCeEEEecccccCCCc----CC---CCCCcceeeeEEEEe
Q psy7414 142 HTTAHQSELIRMG-------LDNFVVFGDVYRRDQI----DS---THFPVFHQADGVHLL 187 (320)
Q Consensus 142 HTSAhq~~~l~~~-------~~~~l~~GdVYRRDeI----D~---tHyPvFHQmEG~~v~ 187 (320)
|.-++ ..+++.. +-++.-.|.|||++.= |. .-...|+|+|.+..-
T Consensus 270 aE~~l-~~l~~~~i~sy~dLPlr~~~~s~cFR~Eags~Grdt~GL~RvrqF~kvE~~~f~ 328 (484)
T 3lss_A 270 SEMPI-AAYHRGRWFTELKEPLKYAGMSTCFRKEAGAHGRDTLGIFRVHQFDKIEQFVVC 328 (484)
T ss_dssp THHHH-HHHTTTCEESCCSSCEEEEEEEEEECCCTTCSSSCCSTTSSCSEEEEEEEEEEE
T ss_pred CcHHH-HHHHhccccchhhCCeeEEeecCccCCCCCcCCcccCCcceeeeEEEEEEEEEe
Confidence 44443 2333321 2378889999998851 10 123379999998764
No 60
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=84.42 E-value=0.95 Score=43.29 Aligned_cols=53 Identities=19% Similarity=0.199 Sum_probs=41.6
Q ss_pred ccccccccCchhhHHHHH-cC-----CCeEEEecccccCCCcCCCCCCcceeeeEEEEe
Q psy7414 135 REYLLRAHTTAHQSELIR-MG-----LDNFVVFGDVYRRDQIDSTHFPVFHQADGVHLL 187 (320)
Q Consensus 135 ~~~lLRTHTSAhq~~~l~-~~-----~~~~l~~GdVYRRDeID~tHyPvFHQmEG~~v~ 187 (320)
+...||.-.++.-++.+. .. +-++..+|.|||.+.-...++-+|||.+.=.+.
T Consensus 75 ~~l~Lrpd~t~~~aR~~~~~~~~~~~P~rl~~~g~vfR~e~p~~gR~Ref~Q~d~e~~g 133 (423)
T 1htt_A 75 DSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQLGCEVFG 133 (423)
T ss_dssp CEEEECSCSHHHHHHHHHHHTCSTTCCEEEEEEEEEECCCCCCSSCCSEEEEEEEEEES
T ss_pred CEEEeCCCchHHHHHHHHhcccccCCCeEEEEEcCEecCCCCCCCccceeEEeeEEEEC
Confidence 468999988887888774 22 348999999999998888899999987655553
No 61
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B*
Probab=83.20 E-value=12 Score=36.84 Aligned_cols=108 Identities=16% Similarity=0.154 Sum_probs=53.8
Q ss_pred CCChHHH-HHHHHHHHHhhc-ccCCCCCCceEEecCCCCeecceeccccCCCCCCCCCCCC-Cccc--------------
Q psy7414 69 KYHPLCM-LKQRIINFFYSE-FVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSK-NDCY-------------- 131 (320)
Q Consensus 69 ~~HPl~i-l~~~I~~~F~~~-~~~~~g~p~F~~~~~~~pVVs~~~NFD~L~~P~DHPsR~~-~DTy-------------- 131 (320)
-.+|++. +++.|++++.+. +....| +..++. |+....+.+ +.+--+|.- -|.|
T Consensus 56 ~~~P~G~~l~~~i~~~~~~~~~~~~~g---~~ev~t--p~l~~~~~~-----~~s~~g~~~r~d~~~e~~~~~g~~~eem 125 (454)
T 1g5h_A 56 RFGPLGVELRKNLASQWWSSMVVFREQ---VFAVDS--LHQEPGSSQ-----PRDSAFRLVSPESIREILQDREPSKEQL 125 (454)
T ss_dssp CBCHHHHHHHHHHHHHHHHHHTTTCTT---EEECCC--CSEECCCCS-----SCCCCCEEECHHHHHHHHCC---CHHHH
T ss_pred eeCchHHHHHHHHHHHHHHHHhhhcCC---eEEEEc--CccCChhhc-----cccccCcccHHHHHHHHhhccCCCHHHH
Confidence 4789975 888999977765 333444 665554 554333322 111111100 1111
Q ss_pred ------cccccccccccCchhhHHHH-------HcCCC-eEEEecccccC--CCcCCCC----CCcceeeeEEEE
Q psy7414 132 ------YVNREYLLRAHTTAHQSELI-------RMGLD-NFVVFGDVYRR--DQIDSTH----FPVFHQADGVHL 186 (320)
Q Consensus 132 ------Yin~~~lLRTHTSAhq~~~l-------~~~~~-~~l~~GdVYRR--DeID~tH----yPvFHQmEG~~v 186 (320)
+.+....||.=|.......+ ++.++ ++.-+|.|||+ +||-..| .-.|.|+|+...
T Consensus 126 ~~~~~~~~~~~~~LRPeta~g~~~~f~~~~~s~r~~LP~~~aqig~~fR~~~nE~s~~~Gl~R~REF~q~E~~~F 200 (454)
T 1g5h_A 126 VAFLENLLKTSGKLRATLLHGALEHYVNCLDLVNRKLPFGLAQIGVCFHPVSNSNQTPSSVTRVGEKTEASLVWF 200 (454)
T ss_dssp HHHHHHHHHHSCEECSCSHHHHHHTHHHHHHHTTTBSCEEEEEEEEEEEEEC---------CEEEEEEEEEEEEE
T ss_pred HHHHHhhcCcceeecccccHHHHHHHhhhHhhcccCCCEEEEEeeeeccCCcccccCCCCccccCceehhheEEE
Confidence 12345678884443333222 21233 77779999998 8884433 235788888644
No 62
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=78.60 E-value=4.4 Score=38.94 Aligned_cols=105 Identities=15% Similarity=0.148 Sum_probs=63.8
Q ss_pred CChHHH-HHHHHHHHHhhcccCCCCCCceEEecCCCCeecceecccc-CCCCCCCCCCCCCcccccc----ccccccccC
Q psy7414 70 YHPLCM-LKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDS-LLVAKDHVSRSKNDCYYVN----REYLLRAHT 143 (320)
Q Consensus 70 ~HPl~i-l~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~-L~~P~DHPsR~~~DTyYin----~~~lLRTHT 143 (320)
..|... +++.|++.+.+.|. +.| |..+.. |++...+-|.. .+- ..+ .+.|-+. +..+||.-.
T Consensus 15 ~lP~~~~~~~~i~~~i~~~~~-~~G---~~ei~t--P~le~~el~~~~~G~---~~~---~em~~~~D~~g~~l~LrPd~ 82 (434)
T 1wu7_A 15 FYPEDMDVEKFIFKTAEEAAE-AFG---FRRIDF--PSLEYLDLYRIKSGE---ELL---QQTYSFVDKGGREVTLIPEA 82 (434)
T ss_dssp BCHHHHHHHHHHHHHHHHHHH-HTT---CEECBC--CSEEETHHHHTTSCT---TGG---GGSCEEECTTSCEEEECSCS
T ss_pred CCHHHHHHHHHHHHHHHHHHH-HcC---CEEeec--cccccHHHhhhccCC---ccc---cceEEEECCCCCEEEeCCCC
Confidence 345433 45555555544332 246 877754 66544444432 111 111 1234342 358999988
Q ss_pred chhhHHHHHcC-----CCeEEEecccccCCCcCCCCCCcceeeeEEEE
Q psy7414 144 TAHQSELIRMG-----LDNFVVFGDVYRRDQIDSTHFPVFHQADGVHL 186 (320)
Q Consensus 144 SAhq~~~l~~~-----~~~~l~~GdVYRRDeID~tHyPvFHQmEG~~v 186 (320)
++.-++.+.+. +-++..+|.|||.+.--...+-+|||.++=.+
T Consensus 83 t~~~aR~~~~~~~~~lP~rl~~~g~vfR~erp~~gR~REF~Q~d~ei~ 130 (434)
T 1wu7_A 83 TPSTVRMVTSRKDLQRPLRWYSFPKVWRYEEPQAGRYREHYQFNADIF 130 (434)
T ss_dssp HHHHHHHHTTCTTCCSSEEEEECCEEECCCCSCSSCCSEEEEEEEEEE
T ss_pred hHHHHHHHHhcCCCCCCeEEEEEcCeecCCCCCCCCccceEEeeEEEE
Confidence 88778877543 23899999999999777889999998655544
No 63
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1
Probab=77.23 E-value=41 Score=32.86 Aligned_cols=108 Identities=11% Similarity=0.194 Sum_probs=62.9
Q ss_pred CChHH-HHHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccccCCCCCCCCCCCCCccccc--------ccccccc
Q psy7414 70 YHPLC-MLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSKNDCYYV--------NREYLLR 140 (320)
Q Consensus 70 ~HPl~-il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~L~~P~DHPsR~~~DTyYi--------n~~~lLR 140 (320)
..|.+ .+++.|++++.+.+. ..| |..+.. |++....-|.. -..|..--..+-|.+ ++...||
T Consensus 33 ~lP~g~~l~~~i~~~~~~~~~-~~G---~~ei~t--P~l~~~~l~~~---~~G~~~~~~~emy~~~d~g~~~~~~~l~LR 103 (459)
T 1nj8_A 33 YLPYGFKIRRYTFEIIRNLLD-ESG---HDEALF--PMLIPEDLLAK---EAEHIKGFEDEVYWVTHGGKTQLDVKLALR 103 (459)
T ss_dssp BCHHHHHHHHHHHHHHHHHHH-HTT---CEECBC--CSEEEHHHHHH---HCSSSGGGGGGCEEEEESSSSEEEEEEEEC
T ss_pred ECChHHHHHHHHHHHHHHHHH-HcC---CEEeeC--CcccCHHHHhh---hcCcccccchhhEEEeccCcccCCCeeEEC
Confidence 45654 477777777765543 335 777654 44322222221 012221111133444 3467899
Q ss_pred ccCchhhHHHHHcC-------CCeEEEecccccCCCcCCCC----CCcce-eeeEEEEe
Q psy7414 141 AHTTAHQSELIRMG-------LDNFVVFGDVYRRDQIDSTH----FPVFH-QADGVHLL 187 (320)
Q Consensus 141 THTSAhq~~~l~~~-------~~~~l~~GdVYRRDeID~tH----yPvFH-QmEG~~v~ 187 (320)
.=+++.-.+++.+. +-++...|.|||.+.-+ ++ +-+|| |.|+-.++
T Consensus 104 P~~~~~i~~~~~~~~~s~r~LP~rl~qig~~fR~E~~~-~rGl~R~REF~qq~d~~~~~ 161 (459)
T 1nj8_A 104 PTSETPIYYMMKLWVKVHTDLPIKIYQIVNTFRYETKH-TRPLIRLREIMTFKEAHTAH 161 (459)
T ss_dssp SSSHHHHHHHHHTTCCBTTSCCCCEEEEECCBCCCCSC-CBTTTBCSBCSCEEEEEEEE
T ss_pred CCCcHHHHHHHHHhhhhcccCCeEEEEEccEecCccCC-CCCceEeeeeeccCcEEEEE
Confidence 88888888887643 23888999999998642 33 44899 77776654
No 64
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens}
Probab=77.03 E-value=35 Score=34.34 Aligned_cols=108 Identities=16% Similarity=0.187 Sum_probs=61.2
Q ss_pred CChHH-HHHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccccCCCCCCCCCCCCCcccccc--------cccccc
Q psy7414 70 YHPLC-MLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSKNDCYYVN--------REYLLR 140 (320)
Q Consensus 70 ~HPl~-il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~L~~P~DHPsR~~~DTyYin--------~~~lLR 140 (320)
..|.+ .+++.|++++.+.+. ..| |..+.. |+.-...-|.. -..|..-=..+-|++. ..+.||
T Consensus 56 ~lP~G~~i~~~L~~~~~~~~~-~~G---y~ev~t--P~l~~~~l~~k---~sGh~~~f~~emy~~~d~g~~~l~e~l~Lr 126 (519)
T 4hvc_A 56 LRPWAYAIWEAIKDFFDAEIK-KLG---VENCYF--PMFVSQSALEK---EKTHVADFAPEVAWVTRSGKTELAEPIAIR 126 (519)
T ss_dssp ECHHHHHHHHHHHHHHHHHHH-HTT---CEECBC--CSEEEHHHHTT---SCCSCGGGGGGCEEEEEETTEEEEEEEEEC
T ss_pred ECccHHHHHHHHHHHHHHHHH-HcC---CEEEec--cccccHHHHhc---ccCCcccccccceEEeccCCcccccceeeC
Confidence 45665 577888888876543 335 777654 44422221110 1122211112235452 246787
Q ss_pred ccCchhhHHHHHcC-------CCeEEEecccccCCCcCCCC----CCcceeeeEEEEe
Q psy7414 141 AHTTAHQSELIRMG-------LDNFVVFGDVYRRDQIDSTH----FPVFHQADGVHLL 187 (320)
Q Consensus 141 THTSAhq~~~l~~~-------~~~~l~~GdVYRRDeID~tH----yPvFHQmEG~~v~ 187 (320)
.=..+.-..++.+. +-++.-.|.|||.+.-+. | +-.|+|.|+..++
T Consensus 127 Ptse~~i~~~~~~~i~SyrdLPlrl~q~g~~fR~E~~~~-~Gl~R~ReF~q~e~h~~~ 183 (519)
T 4hvc_A 127 PTSETVMYPAYAKWVQSHRDLPIKLNQWCNVVRWEFKHP-QPFLRTREFLWQEGHSAF 183 (519)
T ss_dssp SSSHHHHHHHHHHHCSSGGGCCEEEEEEEEEECCCCSCC-BTTTBCSEEEEEEEEEEE
T ss_pred CCCcHHHHHHHHhhccccccCCeEEEEEcCeeeCCCCCC-CCCcceeEEEEeeEEEEe
Confidence 65555555665431 237888999999984343 3 3489999999875
No 65
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=76.86 E-value=0.79 Score=44.94 Aligned_cols=107 Identities=15% Similarity=0.091 Sum_probs=57.4
Q ss_pred CChHH-HHHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccccCCCCCCCCCCCCCccccc----cccccccc---
Q psy7414 70 YHPLC-MLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSKNDCYYV----NREYLLRA--- 141 (320)
Q Consensus 70 ~HPl~-il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~L~~P~DHPsR~~~DTyYi----n~~~lLRT--- 141 (320)
..|.+ .+++.|++++.+.+. ..| |..+.. |++....-|..-+ --|+.+. +-|-+ ++...||.
T Consensus 62 ~lP~g~~~~~~i~~~ir~~~~-~~G---~~ei~t--P~l~~~el~~~sg-~~d~~~~---em~~~~d~~~~~~~LrPt~e 131 (458)
T 2i4l_A 62 WLPLGHRVLKKIEQIVREEQN-RAG---AIELLM--PTLQLADLWRESG-RYDAYGP---EMLRIADRHKRELLYGPTNE 131 (458)
T ss_dssp ECHHHHHHHHHHHHHHHHHHH-HTT---CEECBC--CSEEEHHHHHHHT-HHHHSCT---TSEEEECTTCCEEEECSCCH
T ss_pred ECCCHHHHHHHHHHHHHHHHH-HcC---CEEEEc--CccCcHHHHHhcC-Ccccccc---ceEEEEeCCCCeEEECCCCh
Confidence 34544 356666666655442 346 887764 5554333332211 0001111 11322 23578887
Q ss_pred -cCchhhHHHHH---cCCCeEEEecccccCCCcCCC----CCCcceeeeEEEEe
Q psy7414 142 -HTTAHQSELIR---MGLDNFVVFGDVYRRDQIDST----HFPVFHQADGVHLL 187 (320)
Q Consensus 142 -HTSAhq~~~l~---~~~~~~l~~GdVYRRDeID~t----HyPvFHQmEG~~v~ 187 (320)
.|.+.-...+. ..+-++..+|.|||++ +... -+.+|+|+|+-.+.
T Consensus 132 e~t~~i~r~~~~s~~~lP~rl~~ig~~fR~E-~~p~~Gl~R~REF~q~d~~~f~ 184 (458)
T 2i4l_A 132 EMITEIFRAYIKSYKSLPLNLYHIQWKFRDE-QRPRFGVMRGREFLMKDAYSFD 184 (458)
T ss_dssp HHHHHHHHHHCCBGGGCSEEEEEEEEEECCC-SSCBTGGGBCSEEEEEEEEEEE
T ss_pred HHHHHHHHHHHhhccccCeeeEEecCEeeCC-CCCCCCcccccceEEeEEEEEE
Confidence 33333222222 2234899999999988 3333 57899999988875
No 66
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=76.55 E-value=5.7 Score=38.16 Aligned_cols=51 Identities=24% Similarity=0.156 Sum_probs=36.3
Q ss_pred cccccccCchhhHHHHHcC---CCeEEEecccccCCCcC--CCCCCcceeeeEEEE
Q psy7414 136 EYLLRAHTTAHQSELIRMG---LDNFVVFGDVYRRDQID--STHFPVFHQADGVHL 186 (320)
Q Consensus 136 ~~lLRTHTSAhq~~~l~~~---~~~~l~~GdVYRRDeID--~tHyPvFHQmEG~~v 186 (320)
...||.--|+--+|.+.+. +-++..+|.|||.+.-- .-++-+|||.+.=.+
T Consensus 82 ~l~LRPd~T~~~aR~~~~~~~~p~k~~y~g~vfR~erp~~~~gR~Ref~Q~g~ei~ 137 (464)
T 4g84_A 82 LLSLRYDLTVPFARYLAMNKLTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIA 137 (464)
T ss_dssp CEEECSCSHHHHHHHHHHTTCSCEEEEEEEEEECCCC------CCSEEEEEEEEEE
T ss_pred EEEeCCcCcHHHHHHHHhcCCCCceeEEEecceeccCCccccCccceeeecceecc
Confidence 4789998888777877543 24889999999988542 347889999864443
No 67
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=76.12 E-value=3 Score=42.63 Aligned_cols=105 Identities=12% Similarity=0.204 Sum_probs=67.6
Q ss_pred CChHHH-HHHHHHHHHhhcccCCCCCCceEEecCCCCeecce---------eccccCCCCC-CCCCCCCCcccccc-ccc
Q psy7414 70 YHPLCM-LKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVE---------ENFDSLLVAK-DHVSRSKNDCYYVN-REY 137 (320)
Q Consensus 70 ~HPl~i-l~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~---------~NFD~L~~P~-DHPsR~~~DTyYin-~~~ 137 (320)
.+|.+. +++.|++++.+.+. ..| |..+.. |++... ++|..-.+.- |-- + +.+
T Consensus 266 ~lP~g~~~~~~l~~~ir~~~~-~~G---y~eV~t--P~l~~~~l~~~sG~~d~~~~~mf~~~d~~----------~~~~~ 329 (645)
T 1nyr_A 266 WLPNGATIRREIERYIVDKEV-SMG---YDHVYT--PVLANVDLYKTSGHWDHYQEDMFPPMQLD----------ETESM 329 (645)
T ss_dssp ECHHHHHHHHHHHHHHHHHHH-HTT---EEECBC--CSEEETHHHHHHTHHHHCTTSSCCCEEET----------TTEEE
T ss_pred ECCCHHHHHHHHHHHHHHHHH-HcC---CEEEEC--CeeccHHHHhhCCCccccccCcceeEecC----------CCeEE
Confidence 456554 77777777765543 346 888875 554222 2443333332 211 2 467
Q ss_pred cccccCchhhHHHHHcC-------CCeEEEecccccCCCcCCC----CCCcceeeeEEEEeecc
Q psy7414 138 LLRAHTTAHQSELIRMG-------LDNFVVFGDVYRRDQIDST----HFPVFHQADGVHLLNRD 190 (320)
Q Consensus 138 lLRTHTSAhq~~~l~~~-------~~~~l~~GdVYRRDeID~t----HyPvFHQmEG~~v~~~~ 190 (320)
.||.-+++.-++.+.+. +-++..+|.|||++.--.+ -+-.|||+|+-.+.+++
T Consensus 330 ~LrP~~~~~~~~~~~~~~~syr~LPlrl~~~g~~fR~E~~~~~~GL~R~ReF~Q~d~~~f~~~~ 393 (645)
T 1nyr_A 330 VLRPMNCPHHMMIYANKPHSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHIFVRPD 393 (645)
T ss_dssp EECSSSHHHHHHHHHTSCCBGGGCCEEEEEEEEEECCCCTTTCBTTTBCSEEEEEEEEEEECGG
T ss_pred EeCCCCCHHHHHHHHhhhhhccCCCeEEEEeccEEecCCCccccCcceeeeEEEccEEEEcCHH
Confidence 89998888888888654 2388899999999865333 36899999998765433
No 68
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A
Probab=74.18 E-value=68 Score=31.57 Aligned_cols=109 Identities=13% Similarity=0.102 Sum_probs=60.4
Q ss_pred CChHHH-HHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccccCCCCCCCCCCCCCccccc--------ccccccc
Q psy7414 70 YHPLCM-LKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSKNDCYYV--------NREYLLR 140 (320)
Q Consensus 70 ~HPl~i-l~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~L~~P~DHPsR~~~DTyYi--------n~~~lLR 140 (320)
..|.+. +++.|++++.+.+. ..| |..+.. |++....-|.. -..|...=..+-|.+ ++.+.||
T Consensus 39 ~lP~g~~l~~~I~~~~r~~~~-~~G---~~ei~t--P~l~~~el~~~---~sgh~d~f~~emy~~~d~g~~~l~~~l~LR 109 (477)
T 1hc7_A 39 VRPYGYAIWENIQQVLDRMFK-ETG---HQNAYF--PLFIPMSFLRK---EAEHVEGFSPELAVVTHAGGEELEEPLAVR 109 (477)
T ss_dssp ECHHHHHHHHHHHHHHHHHHH-HTT---CEECBC--CSEEESTTC------------CCTTCEEEEEESSSEEEEEEEEC
T ss_pred ECccHHHHHHHHHHHHHHHHH-HcC---CEEEec--CccccHHHHhh---cCCcccccccceEEEECCCCccCCCeEEEc
Confidence 356544 67777777765543 335 776654 55433333321 123322112233444 3457888
Q ss_pred ccCchhhHHHHHcC-------CCeEEEecccccCCCcCCC--CCCcceeeeEEEEe
Q psy7414 141 AHTTAHQSELIRMG-------LDNFVVFGDVYRRDQIDST--HFPVFHQADGVHLL 187 (320)
Q Consensus 141 THTSAhq~~~l~~~-------~~~~l~~GdVYRRDeID~t--HyPvFHQmEG~~v~ 187 (320)
.=+++.-.+.+.+. +-++.-.|.|||.+.-=+- =+-+|||+|+-.++
T Consensus 110 P~~~~~i~~~~~~~~~s~r~LP~rl~qig~vfR~E~~~rGl~R~REF~q~d~~~~~ 165 (477)
T 1hc7_A 110 PTSETVIGYMWSKWIRSWRDLPQLLNQWGNVVRWEMRTRPFLRTSEFLWQEGHTAH 165 (477)
T ss_dssp SCSHHHHHHHHHHHCCBGGGCCEEEEEEEEEECCCSSCBTTTBCSEEEEEEEEEEE
T ss_pred CCCcHHHHHHHHhhhhccccCCeeeEeecCEEeCCCCCCCcceeEEEEEccEEEEe
Confidence 76666666666421 2378889999999943111 34589999998875
No 69
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=73.81 E-value=4.7 Score=38.41 Aligned_cols=102 Identities=17% Similarity=0.276 Sum_probs=62.7
Q ss_pred CChHH-HHHHHHHHHHhhcccCCCCCCceEEecCCCCeecce---------eccccCCCCCCCCCCCCCccccccccccc
Q psy7414 70 YHPLC-MLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVE---------ENFDSLLVAKDHVSRSKNDCYYVNREYLL 139 (320)
Q Consensus 70 ~HPl~-il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~---------~NFD~L~~P~DHPsR~~~DTyYin~~~lL 139 (320)
..|.+ .+++.|++++.+.+. ..| |..+.. |++... .+|..-.+..|+- ++.+.|
T Consensus 25 ~lP~g~~~~~~i~~~~~~~~~-~~G---~~ei~t--P~l~~~~l~~~sG~~~~~~~em~~~d~~----------~~~~~L 88 (401)
T 1evl_A 25 WHNDGWTIFRELEVFVRSKLK-EYQ---YQEVKG--PFMMDRVLWEKTGHWDNYKDAMFTTSSE----------NREYCI 88 (401)
T ss_dssp ECHHHHHHHHHHHHHHHHHHH-HTT---CEECBC--CSEEEHHHHHHHTHHHHSGGGCCEEEET----------TEEEEE
T ss_pred ECchHHHHHHHHHHHHHHHHH-HcC---CEEEEC--CeeccHHHHHhcCcHhhhchhhEeEecC----------CceEEE
Confidence 45554 467777777765543 346 888765 444222 2444333333321 235678
Q ss_pred cccCchhhHHHHHcC-------CCeEEEecccccCCCcCCC----CCCcceeeeEEEEe
Q psy7414 140 RAHTTAHQSELIRMG-------LDNFVVFGDVYRRDQIDST----HFPVFHQADGVHLL 187 (320)
Q Consensus 140 RTHTSAhq~~~l~~~-------~~~~l~~GdVYRRDeID~t----HyPvFHQmEG~~v~ 187 (320)
|.=+++.-.+.+.+. +-++..+|.|||++.-..+ -+.+|||+|+-.+.
T Consensus 89 rP~~~~~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~~p~~Gl~R~reF~q~d~~~f~ 147 (401)
T 1evl_A 89 KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFC 147 (401)
T ss_dssp CSCSHHHHHHHHTSSCCBGGGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEE
T ss_pred cCCCCHHHHHHHHhhhhhhhhCChhhccccceecCCCCcccccccccCcEEecceEEeC
Confidence 876666667777542 2388889999999864123 47899999999664
No 70
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=73.09 E-value=7.1 Score=38.57 Aligned_cols=51 Identities=24% Similarity=0.148 Sum_probs=35.9
Q ss_pred cccccccCchhhHHHHHcC---CCeEEEecccccCCCcCC--CCCCcceeeeEEEE
Q psy7414 136 EYLLRAHTTAHQSELIRMG---LDNFVVFGDVYRRDQIDS--THFPVFHQADGVHL 186 (320)
Q Consensus 136 ~~lLRTHTSAhq~~~l~~~---~~~~l~~GdVYRRDeID~--tHyPvFHQmEG~~v 186 (320)
...||.--|+--+|.+.++ +-++..+|.|||++.--. -++-+|||.+.=.+
T Consensus 135 ~l~LRPd~T~~~aR~~~~~~~~p~k~yyig~vfR~Erp~~~~GR~ReF~Q~g~ei~ 190 (517)
T 4g85_A 135 LLSLRYDLTVPFARYLAMNKLTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIA 190 (517)
T ss_dssp CEEECSCSHHHHHHHHHHTTCSCEEEEEEEEEECCCC-------CCEEEEEEEEEE
T ss_pred EEEeCCcCcHHHHHHHHhCCCCCceeEEEeceEeccCcccccCccceeeeeceecc
Confidence 4789998888778877543 248899999999885422 46889999764444
No 71
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A
Probab=69.59 E-value=7.4 Score=38.16 Aligned_cols=106 Identities=16% Similarity=0.258 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccccCCCCCCCCCCCCCcccccc---ccccccccCchhhHHH
Q psy7414 74 CMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSKNDCYYVN---REYLLRAHTTAHQSEL 150 (320)
Q Consensus 74 ~il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~L~~P~DHPsR~~~DTyYin---~~~lLRTHTSAhq~~~ 150 (320)
..+++.|++++.+.+. ..| |..+.. |++....-|..=+ |-..-..+-|-++ +.+.||.=+++.-+++
T Consensus 49 ~~~~~~i~~~~~~~~~-~~G---~~ei~t--P~l~~~~l~~~sg----~~~~~~~emy~~d~~~~~l~LRP~~t~~i~~~ 118 (471)
T 3a32_A 49 GPIRYALAEVLAKFHA-RRG---YYVVET--PIIASTELFKVSG----HIEFYRNNMYLFDIEGHEFAVKPMNCPYHILL 118 (471)
T ss_dssp HHHHHHHHHHHHHHHH-HTT---CEECCC--CSEEETHHHHHTC----CCTTGGGGSEEEEETTEEEEECSCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HcC---CEEEEC--CeeeehHHhhhcc----CccccccceEEEecCCcEEEEccccHHHHHHH
Confidence 4466777776665543 346 777754 5554433333222 2211122334442 3578998766666665
Q ss_pred HHc---------C-CCeEEEecccccCCCcCC--C--CCCcceeeeEEEEeec
Q psy7414 151 IRM---------G-LDNFVVFGDVYRRDQIDS--T--HFPVFHQADGVHLLNR 189 (320)
Q Consensus 151 l~~---------~-~~~~l~~GdVYRRDeID~--t--HyPvFHQmEG~~v~~~ 189 (320)
+.+ . +-++..+|.|||++.--+ - -+-+|+|+|+-.+.+.
T Consensus 119 ~~~~~~s~r~~~~lP~rl~~~g~vfR~E~~~~~~Gl~R~REF~Q~~~e~f~~~ 171 (471)
T 3a32_A 119 FLNEVAKHRSKLPLPFKVFEFGRVHRYEPSGSIYGLLRVRGFTQDDAHIIVPG 171 (471)
T ss_dssp HHHHHHHHGGGSCSSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEEEG
T ss_pred HHhhhhhccccccCCeEEeeccceeccCCCcccccceeEEEEEECCeEEEcCh
Confidence 531 2 348889999999986431 1 4679999988777543
No 72
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*
Probab=61.03 E-value=16 Score=36.01 Aligned_cols=111 Identities=19% Similarity=0.270 Sum_probs=62.8
Q ss_pred CChHH-HHHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccccCCCCCCCCCCCCCccccc------ccccccccc
Q psy7414 70 YHPLC-MLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSKNDCYYV------NREYLLRAH 142 (320)
Q Consensus 70 ~HPl~-il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~L~~P~DHPsR~~~DTyYi------n~~~lLRTH 142 (320)
.+|.+ .+++.|++++.+.+....| |..+.. |+.-...-|..= .|-..-..+-|.+ ++.+.||.=
T Consensus 59 ~lP~g~~l~~~l~~~~~~~~~~~~G---y~ev~t--P~l~~~~l~~~s----Gh~~~~~~emy~~~d~~~~~~~l~LrPt 129 (460)
T 3uh0_A 59 FLPNGAKIFNKLIEFMKLQQKFKFG---FNEVVT--PLIYKKTLWEKS----GHWENYADDMFKVETTDEEKEEYGLKPM 129 (460)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHTSC---CEECCC--CSEEEHHHHHHH----TCTTTSGGGSCEECC------CEEECSC
T ss_pred ECccHHHHHHHHHHHHHHHHHHhcC---CEEEEC--CeeccHHHHHhc----CCccccccceEEEecCCCCCceEEEccc
Confidence 55664 4778888888776523446 887754 554222222111 1111111122222 234677765
Q ss_pred CchhhHHHHHcC-------CCeEEEecccccCCCcCCC----CCCcceeeeEEEEeec
Q psy7414 143 TTAHQSELIRMG-------LDNFVVFGDVYRRDQIDST----HFPVFHQADGVHLLNR 189 (320)
Q Consensus 143 TSAhq~~~l~~~-------~~~~l~~GdVYRRDeID~t----HyPvFHQmEG~~v~~~ 189 (320)
+.+....++++. +-++...|.|||.+.--++ =+-.|+|+|+..+-++
T Consensus 130 ~~~~~~~~~~~~~~s~r~LPlrl~~~g~~fR~E~~~~~~GL~R~ReF~q~d~~~f~~~ 187 (460)
T 3uh0_A 130 NCPGHCLIFGKKDRSYNELPLRFSDFSPLHRNEASGALSGLTRLRKFHQDDGHIFCTP 187 (460)
T ss_dssp SHHHHHHHHTTSCCBGGGCSEEEEECCEEECCCCTTTCBTTTBCSEEEEEEEEEEECG
T ss_pred CcHHHHHHHHhccccccccCeEEEEecCeeeCCCCCCCCCceeeeeEEEeeEEEEcCH
Confidence 555566666543 2378889999999864323 3578999999876443
No 73
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Probab=59.36 E-value=89 Score=32.45 Aligned_cols=55 Identities=20% Similarity=0.277 Sum_probs=39.6
Q ss_pred cccccccCchhh----HHHHHcC---C-CeEEEecccccCCCcCCCCC----CcceeeeEEEEeeccc
Q psy7414 136 EYLLRAHTTAHQ----SELIRMG---L-DNFVVFGDVYRRDQIDSTHF----PVFHQADGVHLLNRDQ 191 (320)
Q Consensus 136 ~~lLRTHTSAhq----~~~l~~~---~-~~~l~~GdVYRRDeID~tHy----PvFHQmEG~~v~~~~~ 191 (320)
..-||.=|++-. .++++.. . -++.-+|.+||++ |-..|- -.|+|+|+-...++++
T Consensus 239 ~~~LRPEtaqg~f~~f~r~~~~~~~~LP~~~aqiG~~fRnE-isPr~GLlR~REF~q~d~e~F~~p~~ 305 (693)
T 2zt5_A 239 PGYLRPETAQGIFLNFKRLLEFNQGKLPFAAAQIGNSFRNE-ISPRSGLIRVREFTMAEIEHFVDPSE 305 (693)
T ss_dssp EEEECSCSHHHHHTTHHHHHHHTTTCSCEEEEEEEEEECCC-SSCCSGGGSCSEEEEEEEEEEECTTC
T ss_pred ceeeccccchHHHHHHHHHHHHhCcCCCEEEEeecceecCC-CCCCCCCccceeeEEccceEEeCcch
Confidence 456888888877 6666542 2 3788899999997 445554 8999999966654443
No 74
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803}
Probab=49.33 E-value=1.4e+02 Score=30.01 Aligned_cols=107 Identities=17% Similarity=0.294 Sum_probs=56.6
Q ss_pred CChHHH-HHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccccCCCCCCCCCCCCCccccc--------ccccccc
Q psy7414 70 YHPLCM-LKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSKNDCYYV--------NREYLLR 140 (320)
Q Consensus 70 ~HPl~i-l~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~L~~P~DHPsR~~~DTyYi--------n~~~lLR 140 (320)
.+|.+. +++.|++++.+.+. ..| |..+.. |+.-...-|. --..|..-=..+-|.+ +..+.||
T Consensus 50 ~lP~G~~i~~~L~~~~~~~~~-~~G---y~eV~t--P~l~~~el~~---k~sgh~~~f~~emy~v~d~g~~~~~~~l~Lr 120 (518)
T 3ial_A 50 FRPYGFFMENAIMRLCEEEYA-KVG---ISQILF--PTVIPESFLK---KESDHIKGFEAECFWVEKGGLQPLEERLALR 120 (518)
T ss_dssp ECHHHHHHHHHHHHHHHHHHH-HTT---CEECBC--CSEEEHHHHT---SSHHHHHHHGGGCEEEEEETTEEEEEEEEEC
T ss_pred ECccHHHHHHHHHHHHHHHHH-HcC---CEEEEc--ccccCHHHHH---hhcCCcccccccEEEEecCCCcccCcceeEC
Confidence 467664 77788888766553 345 777654 4431111110 0000100000122333 2357787
Q ss_pred ccCchhhHHHHHc-------CCCeEEEecccccCCCcCCC----CCCcceeeeEEEE
Q psy7414 141 AHTTAHQSELIRM-------GLDNFVVFGDVYRRDQIDST----HFPVFHQADGVHL 186 (320)
Q Consensus 141 THTSAhq~~~l~~-------~~~~~l~~GdVYRRDeID~t----HyPvFHQmEG~~v 186 (320)
.=..+.-..++++ -+-++.-.|.|||.+. -.+ -+-+|+|+|+..+
T Consensus 121 Pt~e~~i~~~~~~~i~SyrdLPlrl~q~~~~fR~E~-~~~~GL~R~REF~q~e~h~f 176 (518)
T 3ial_A 121 PTSETAIYSMFSKWVRSYKDLPLKIHQTCTIFRHET-KNTKPLIRVREIHWNEAHCC 176 (518)
T ss_dssp SSSHHHHHHHHHHHCCBGGGCCEEEEEEEEEECTTC-CSCBTTTBCSEEEEEEEEEE
T ss_pred CCCcHHHHHHHHhhhcccccCCeEEEEEeceecCCC-CCCCCCceeeEEEEeeEEEE
Confidence 5333334455532 1237888999999983 223 2458999999888
No 75
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=46.63 E-value=20 Score=36.80 Aligned_cols=104 Identities=16% Similarity=0.264 Sum_probs=65.7
Q ss_pred CChHHH-HHHHHHHHHhhcccCCCCCCceEEecCCCCeecc---------eeccccCCCCCCCCCCCCCccccccccccc
Q psy7414 70 YHPLCM-LKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTV---------EENFDSLLVAKDHVSRSKNDCYYVNREYLL 139 (320)
Q Consensus 70 ~HPl~i-l~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~---------~~NFD~L~~P~DHPsR~~~DTyYin~~~lL 139 (320)
.+|.+. +++.|++++.+.+. ..| |..+.. |++.. +.+|..-.+..| |. ++++.|
T Consensus 266 ~lP~g~~l~~~l~~~~r~~~~-~~G---y~ev~t--P~l~~~~l~~~sGh~~~~~~~my~~d---~~-------~~~~~L 329 (642)
T 1qf6_A 266 WHNDGWTIFRELEVFVRSKLK-EYQ---YQEVKG--PFMMDRVLWEKTGHWDNYKDAMFTTS---SE-------NREYCI 329 (642)
T ss_dssp ECHHHHHHHHHHHHHHHHHHH-HTT---CEECCC--CSEEETHHHHHHSHHHHHGGGCEEEE---ET-------TEEEEE
T ss_pred ECCcHHHHHHHHHHHHHHHHH-HcC---CEEEEC--CcCccHHHHhhcCccccccccceeee---cC-------CceEEe
Confidence 567654 77888887766553 346 888765 44422 235544334332 11 235678
Q ss_pred cccCchhhHHHHHcC-------CCeEEEecccccCCCcCCC----CCCcceeeeEEEEeec
Q psy7414 140 RAHTTAHQSELIRMG-------LDNFVVFGDVYRRDQIDST----HFPVFHQADGVHLLNR 189 (320)
Q Consensus 140 RTHTSAhq~~~l~~~-------~~~~l~~GdVYRRDeID~t----HyPvFHQmEG~~v~~~ 189 (320)
|.=+.+...+.+.+. +-++.-.|.|||++.--.+ =+-.|+|.|+-...++
T Consensus 330 rP~~~~~~~~~~~~~~~syr~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~ 390 (642)
T 1qf6_A 330 KPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTE 390 (642)
T ss_dssp CSSSHHHHHHHHTTSCEEGGGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEECG
T ss_pred cCCCCHHHHHHHHhhhhhccccCeEEEEeccEEecCCCccccCCceeeeEEEccEEEEcCH
Confidence 876667677777543 2388889999999864123 3678999999886543
No 76
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
Probab=40.74 E-value=1 Score=46.04 Aligned_cols=52 Identities=8% Similarity=-0.019 Sum_probs=38.7
Q ss_pred hhhccCCCCCCCCCCChHHHHHHHHHHHHhhcccCCCCCCceEEecCCCCeecceeccccCCCCC
Q psy7414 56 KILSYLNKNLHNKKYHPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAK 120 (320)
Q Consensus 56 ~Ils~~gr~l~~~~~HPl~il~~~I~~~F~~~~~~~~g~p~F~~~~~~~pVVs~~~NFD~L~~P~ 120 (320)
+|.+ +||+||.. |++++|+.|.++|..... + -+-...|+++.+|||+++...
T Consensus 124 ~i~~-~g~~~~~~---~~~~~~~~~~~y~~~~~~-------~--~~~~~~v~~~~~~~~s~g~~~ 175 (549)
T 2du7_A 124 IIKN-LGIDIDEE---KKERLREVLHLYKKGAID-------G--DDLVFEIAKALNVSNEMGLKV 175 (549)
T ss_dssp CSSC-SCCCCSCC---CSSSCCCSCCCSSSSCCC-------S--SSCCSCCCSSSSCCSCSCCCS
T ss_pred hhhh-cccccccc---hhhhhhhhhhhhccCCCc-------h--hhhhhHhhhhhhccccccccc
Confidence 4556 89999977 999999999998853210 1 112357899999999999866
No 77
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C*
Probab=30.98 E-value=39 Score=30.59 Aligned_cols=51 Identities=18% Similarity=0.047 Sum_probs=33.4
Q ss_pred cccccccCchhhHH-HHHc---CCCeEEEecccccCCCcCCCCCCcceeeeEEEEeecc
Q psy7414 136 EYLLRAHTTAHQSE-LIRM---GLDNFVVFGDVYRRDQIDSTHFPVFHQADGVHLLNRD 190 (320)
Q Consensus 136 ~~lLRTHTSAhq~~-~l~~---~~~~~l~~GdVYRRDeID~tHyPvFHQmEG~~v~~~~ 190 (320)
...||.=.|+.-+. .+.. .+-|+...|.|||.+.--+ -.|||++ +-++..+
T Consensus 47 ~l~LRpd~T~~~a~~~~~~~~~~p~R~~y~g~vfR~e~~~~---Ref~Q~g-~ei~g~~ 101 (275)
T 1usy_A 47 LFSIREDFTKTVLNHRKRYSPDSQIKVWYADFVYRYSGSDL---VAEYQLG-LEKVPRN 101 (275)
T ss_dssp EEEECCCHHHHHHHHHTTCTTCCCEEEECCEEEEEEETTEE---EEEEEEE-EEEESCC
T ss_pred EEEeCCcChHHHHHHHhhcCCCCceEEEEeceEEecCCCCC---CeeeEeC-EEEecCC
Confidence 57899876655541 1111 2348999999999987444 7999964 5555433
No 78
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=29.55 E-value=25 Score=36.28 Aligned_cols=31 Identities=32% Similarity=0.414 Sum_probs=23.4
Q ss_pred EEEeccCCCCCCCceE----------------EEeeeCCceEEEeeccc
Q psy7414 280 MRWISEYFPFTHPSWE----------------LEILLNDKWVEILGCGV 312 (320)
Q Consensus 280 ~Rw~~ayFPFTePS~E----------------leV~~~g~WLEvLGCGv 312 (320)
-||..+-.|||.|--| .|+.++| .||+|..+
T Consensus 456 ~~~~a~HhPFT~P~~~d~~~l~~~p~~~~a~~ydlv~~g--~El~~gs~ 502 (617)
T 4ah6_A 456 RELESAHHPFTAPHPSDIHLLYTEPKKARSQHYDLVLNG--NEIGGGSI 502 (617)
T ss_dssp SSCCBSSCSSCCCCCTTSTHHHHSTTSSBCCCEEEEETT--EEEEEEEC
T ss_pred cceeeccCCcCCCChhhHHHhhcChhhhhhceEEEEECC--EEEeeeeE
Confidence 4788889999999533 5777787 69887653
Done!