RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7414
(320 letters)
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold,
RRM domain, RNA recogntion, aminoacyl-tRNA synthetase,
ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB:
3hfv_A* 3teg_A* 3tup_A
Length = 415
Score = 279 bits (714), Expect = 5e-92
Identities = 122/295 (41%), Positives = 191/295 (64%), Gaps = 32/295 (10%)
Query: 25 STHAVKNDVEKATLTINGKTYHTDDYTNVTPKILSYLNKNLHNKKYHPLCMLKQRIINFF 84
+ + + + GK+Y DD++N+T K+L+ + +NLHN+++HPL ++K+R+ F
Sbjct: 2 AAECATQRAPGSVVELLGKSYPQDDHSNLTRKVLTRVGRNLHNQQHHPLWLIKERVKEHF 61
Query: 85 YSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSKNDCYYVNREYLLRAHTT 144
Y ++VG+ GTP+FS+YD++SPVVT +NFDSLL+ DH SR K D YY+NR ++LRAHT+
Sbjct: 62 YKQYVGRFGTPLFSVYDNLSPVVTTWQNFDSLLIPADHPSRKKGDNYYLNRTHMLRAHTS 121
Query: 145 AHQSELIRMGLDNFVVFGDVYRRDQIDSTHFPVFHQADGVHLLNRDQVSRGDIGVGTSLK 204
AHQ +L+ GLD F+V GDVYRRDQIDS H+P+FHQ + V L ++ ++ G
Sbjct: 122 AHQWDLLHAGLDAFLVVGDVYRRDQIDSQHYPIFHQLEAVRLFSKHELFAG--------- 172
Query: 205 IMTIFTPTSQEYFYIKKCNKISESIGQNIVIFEQGGVHTDEKQARHTLDATKVMEQKLKN 264
G+++ +FEQ + KQ HT++A K++E LK
Sbjct: 173 ----------------------IKDGESLQLFEQSS-RSAHKQETHTMEAVKLVEFDLKQ 209
Query: 265 SLVKLAKILFGDDIQMRWISEYFPFTHPSWELEILLNDKWVEILGCGVIRHEILD 319
+L +L LFGD++++RW+ YFPFTHPS+E+EI + +W+E+LGCGV+ ++++
Sbjct: 210 TLTRLMAHLFGDELEIRWVDCYFPFTHPSFEMEINFHGEWLEVLGCGVMEQQLVN 264
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer,
phenylalanine, aminoacyl-tRNA synthetase, ATP-binding,
cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus
haemolyticus} PDB: 2rhs_A*
Length = 294
Score = 73.8 bits (182), Expect = 3e-15
Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 25/123 (20%)
Query: 71 HPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISP-VVTVEENFDSLLVAKDHVSRSKND 129
HPL + I + F +G + I D V NF++L + K H +R D
Sbjct: 53 HPLTRTVEEIEDLFLG--LG------YEIVDG--YEVEQDYYNFEALNLPKSHPARDMQD 102
Query: 130 CYYVNREYLLRAHTT--------AHQSEL-IRMGLDNFVVFGDVYRRDQIDSTHFPVFHQ 180
+Y+ E L+R HT+ + +++ + G VYRRD D+TH F Q
Sbjct: 103 SFYITDEILMRTHTSPVQARTMEKRNGQGPVKI-----ICPGKVYRRDSDDATHSHQFTQ 157
Query: 181 ADG 183
+G
Sbjct: 158 IEG 160
Score = 56.5 bits (137), Expect = 2e-09
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 12/64 (18%)
Query: 262 LKNSLVKLAKILFGDDIQMRWISEYFPFTHPSWELEILL------------NDKWVEILG 309
LK +L +AK LFG D ++R YFPFT PS E+++ + W+EILG
Sbjct: 172 LKGTLELVAKKLFGADREIRLRPSYFPFTEPSVEVDVSCFKCKGKGCNVCKHTGWIEILG 231
Query: 310 CGVI 313
G++
Sbjct: 232 AGMV 235
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 701
Score = 71.2 bits (174), Expect = 8e-14
Identities = 19/134 (14%), Positives = 43/134 (32%), Gaps = 27/134 (20%)
Query: 66 HNKKYHPLCMLKQRIINFFYS-EFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVS 124
K + K+ + + + G + V E ++L ++ +
Sbjct: 133 IEKLGIKVSEHKESLQKILHGYKKGTLDGDDL------------VLEISNALEISSEMGL 180
Query: 125 RSKNDCY-------YVNREYLLRAHTTAHQSELIRMGLDN------FVVFGDVYRRDQI- 170
+ D + V+ + LR+H T+ + ++ +RR+Q
Sbjct: 181 KILEDVFPEFKDLTAVSSKLTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKE 240
Query: 171 DSTHFPVFHQADGV 184
D +H +H A
Sbjct: 241 DKSHLMTYHSASCA 254
Score = 65.4 bits (159), Expect = 6e-12
Identities = 9/61 (14%), Positives = 18/61 (29%), Gaps = 4/61 (6%)
Query: 262 LKNSLVKLAKILFGDDIQMRWISEYFPFTHPSWELEILL----NDKWVEILGCGVIRHEI 317
K L + + + + P + E+ +W+E+ GV
Sbjct: 265 GKAIAEGLLSQFGFTNFKFIPDEKKSKYYTPETQTEVYAYHPKLKEWLEVATFGVYSPVA 324
Query: 318 L 318
L
Sbjct: 325 L 325
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 685
Score = 70.8 bits (173), Expect = 1e-13
Identities = 19/133 (14%), Positives = 43/133 (32%), Gaps = 27/133 (20%)
Query: 67 NKKYHPLCMLKQRIINFFYS-EFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSR 125
K + K+ + + + G + V E ++L ++ + +
Sbjct: 134 EKLGIKVSEHKESLQKILHGYKKGTLDGDDL------------VLEISNALEISSEMGLK 181
Query: 126 SKNDCY-------YVNREYLLRAHTTAHQSELIRMGLDN------FVVFGDVYRRDQI-D 171
D + V+ + LR+H T+ + ++ +RR+Q D
Sbjct: 182 ILEDVFPEFKDLTAVSSKLTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKED 241
Query: 172 STHFPVFHQADGV 184
+H +H A
Sbjct: 242 KSHLMTYHSASCA 254
Score = 65.0 bits (158), Expect = 7e-12
Identities = 30/288 (10%), Positives = 72/288 (25%), Gaps = 63/288 (21%)
Query: 69 KYHPLCMLKQRIINFF----YSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVS 124
K HP+ + + + + E++ PV+ E + +
Sbjct: 63 KTHPVNDTIENLRQAYLRMGFEEYIN--------------PVIVDERDIYKQFGPEAMAV 108
Query: 125 R--------SKNDCYYVNREYLLRAHTTAHQS-------ELIRMGLDNFVVFGDVYRRDQ 169
++ E + + + + I G + GD +
Sbjct: 109 LDRCFYLAGLPRPDVGLSDEKISQIEKLGIKVSEHKESLQKILHGYKKGTLDGDDLVLEI 168
Query: 170 IDSTHFPVFHQADGVHLLNRDQVSRGDIGVG-------TSLKIMTIFT-----PTSQEYF 217
++ + + + + TS +T+ P + F
Sbjct: 169 SNALEISSEMGLKILEDVFPEFKDLTAVSSKLTLRSHMTSGWFLTVSDLMNKKPLPFKLF 228
Query: 218 YIKKCNKISESIGQN--IVIFEQG-GVHTDEKQARHTLDATKVMEQKLKNSLVKLAKILF 274
I +C + E ++ + E + K L
Sbjct: 229 SIDRCFR-REQKEDKSHLMTYHSASCAIAGE-------GVD--IND-GKAIAEGLLSQFG 277
Query: 275 GDDIQMRWISEYFPFTHPSWELEILL----NDKWVEILGCGVIRHEIL 318
+ + + + P + E+ +W+E+ GV L
Sbjct: 278 FTNFKFIPDEKKSKYYTPETQTEVYAYHPKLKEWLEVATFGVYSPVAL 325
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 665
Score = 68.9 bits (168), Expect = 4e-13
Identities = 19/134 (14%), Positives = 43/134 (32%), Gaps = 27/134 (20%)
Query: 66 HNKKYHPLCMLKQRIINFFYS-EFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVS 124
K + K+ + + + G + V E ++L ++ +
Sbjct: 133 IEKLGIKVSEHKESLQKILHGYKKGTLDGDDL------------VLEISNALEISSEMGL 180
Query: 125 RSKNDCY-------YVNREYLLRAHTTAHQSELIRMGLDN------FVVFGDVYRRDQI- 170
+ D + V+ + LR+H T+ + ++ +RR+Q
Sbjct: 181 KILEDVFPEFKDLTAVSSKLTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKE 240
Query: 171 DSTHFPVFHQADGV 184
D +H +H A
Sbjct: 241 DKSHLMTYHSASCA 254
Score = 65.4 bits (159), Expect = 5e-12
Identities = 9/61 (14%), Positives = 18/61 (29%), Gaps = 4/61 (6%)
Query: 262 LKNSLVKLAKILFGDDIQMRWISEYFPFTHPSWELEILL----NDKWVEILGCGVIRHEI 317
K L + + + + P + E+ +W+E+ GV
Sbjct: 265 GKAIAEGLLSQFGFTNFKFIPDEKKSKYYTPETQTEVYAYHPKLKEWLEVATFGVYSPVA 324
Query: 318 L 318
L
Sbjct: 325 L 325
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation,
tRNA-binding, DNA-binding domain, four-helix
aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP;
3.02A {Escherichia coli}
Length = 327
Score = 67.5 bits (166), Expect = 6e-13
Identities = 36/119 (30%), Positives = 54/119 (45%), Gaps = 20/119 (16%)
Query: 71 HPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISP-VVTVEENFDSLLVAKDHVSRSKND 129
HP+ RI +FF +G F++ P + NFD+L + H +R+ +D
Sbjct: 107 HPVTRTIDRIESFFGE--LG------FTVATG--PEIEDDYHNFDALNIPGHHPARADHD 156
Query: 130 CYYVNREYLLRAHTTAHQSELIRMGLDN-----FVVFGDVYRRDQIDSTHFPVFHQADG 183
++ + LLR T+ Q IR + G VYR D D TH P+FHQ +G
Sbjct: 157 TFWFDTTRLLRTQTSGVQ---IRTMKAQQPPIRIIAPGRVYRND-YDQTHTPMFHQMEG 211
Score = 62.9 bits (154), Expect = 2e-11
Identities = 23/51 (45%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 262 LKNSLVKLAKILFGDDIQMRWISEYFPFTHPSWELEIL-LNDKWVEILGCG 311
LK +L + F +D+Q+R+ YFPFT PS E++++ N KW+E+LGCG
Sbjct: 223 LKGTLHDFLRNFFEEDLQIRFRPSYFPFTEPSAEVDVMGKNGKWLEVLGCG 273
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 648
Score = 67.7 bits (165), Expect = 1e-12
Identities = 19/134 (14%), Positives = 43/134 (32%), Gaps = 27/134 (20%)
Query: 66 HNKKYHPLCMLKQRIINFFYS-EFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVS 124
K + K+ + + + G + V E ++L ++ +
Sbjct: 133 IEKLGIKVSEHKESLQKILHGYKKGTLDGDDL------------VLEISNALEISSEMGL 180
Query: 125 RSKNDCY-------YVNREYLLRAHTTAHQSELIRMGLDN------FVVFGDVYRRDQI- 170
+ D + V+ + LR+H T+ + ++ +RR+Q
Sbjct: 181 KILEDVFPEFKDLTAVSSKLTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKE 240
Query: 171 DSTHFPVFHQADGV 184
D +H +H A
Sbjct: 241 DKSHLMTYHSASCA 254
Score = 63.5 bits (154), Expect = 2e-11
Identities = 9/61 (14%), Positives = 18/61 (29%), Gaps = 4/61 (6%)
Query: 262 LKNSLVKLAKILFGDDIQMRWISEYFPFTHPSWELEILL----NDKWVEILGCGVIRHEI 317
K L + + + + P + E+ +W+E+ GV
Sbjct: 265 GKAIAEGLLSQFGFTNFKFIPDEKKSKYYTPETQTEVYAYHPKLKEWLEVATFGVYSPVA 324
Query: 318 L 318
L
Sbjct: 325 L 325
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA
complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB:
2du4_A 2du5_A* 2du6_A*
Length = 534
Score = 66.0 bits (161), Expect = 3e-12
Identities = 14/90 (15%), Positives = 27/90 (30%), Gaps = 14/90 (15%)
Query: 109 VEENFDSLLVAKDHVSRSKNDCYY-------VNREYLLRAHTTAHQSELIRMGLDN---- 157
+ L V + ++ + ++ LR+H T + D
Sbjct: 146 SYLIAEVLDVDDITAVKILDEVFPEFKELKPISSTLTLRSHMTTGWFITLSHIADKLPLP 205
Query: 158 --FVVFGDVYRRDQ-IDSTHFPVFHQADGV 184
+RR+Q D+T + A V
Sbjct: 206 IKLFSIDRCFRREQGEDATRLYTYFSASCV 235
Score = 60.6 bits (147), Expect = 2e-10
Identities = 11/69 (15%), Positives = 22/69 (31%), Gaps = 12/69 (17%)
Query: 262 LKNSLVKLAKILFGDDIQMRWISEYFPFTHPSWELEI------------LLNDKWVEILG 309
K L + ++ + R + + P + E+ +D W+EI
Sbjct: 246 GKAVAEALLRQFGFENFRFRKDEKRSKYYIPDTQTEVFAFHPKLVGSSTKYSDGWIEIAT 305
Query: 310 CGVIRHEIL 318
G+ L
Sbjct: 306 FGIYSPTAL 314
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation,
tRNA-binding, DNA-binding domain, four-helix
acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A
{Homo sapiens}
Length = 508
Score = 64.5 bits (157), Expect = 8e-12
Identities = 32/162 (19%), Positives = 59/162 (36%), Gaps = 54/162 (33%)
Query: 69 KYHPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSKN 128
HPL ++ + F +G F+ + + + + NFD+L + H +R ++
Sbjct: 223 HLHPLLKVRSQFRQIFLE--MG------FTEMPTDNFIESSFWNFDALFQPQQHPARDQH 274
Query: 129 DCYYVN---------------------------------------REYLLRAHTTAHQS- 148
D +++ R+ LLR HTT+ +
Sbjct: 275 DTFFLRDPAEALQLPMDYVQRVKRTHSQGGYGSQGYKYNWKLDEARKNLLRTHTTSASAR 334
Query: 149 ELIRMGLDN------FVVFGDVYRRDQIDSTHFPVFHQADGV 184
L R+ + V+R + +D+TH FHQ +GV
Sbjct: 335 ALYRLAQKKPFTPVKYFSIDRVFRNETLDATHLAEFHQIEGV 376
Score = 53.0 bits (127), Expect = 5e-08
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Query: 262 LKNSLVKLAKILFGDDIQMRWISEYFPFTHPSWELEILLN--DKWVEILGCGVIRHEIL 318
L L + L ++ + Y P+T PS E+ KWVE+ GV R E+L
Sbjct: 387 LMGVLREFFTKLGITQLRFK--PAYNPYTEPSMEVFSYHQGLKKWVEVGNSGVFRPEML 443
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta
homodimer, ligase; HET: FYA; 2.50A {Thermus
thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A
1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A*
2amc_A*
Length = 350
Score = 63.4 bits (155), Expect = 1e-11
Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 34/134 (25%)
Query: 71 HPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISP-VVTVEENFDSLLVAKDHVSRSKND 129
HP+ ++++ ++ F + +G + + P V + NFD+L + + H +R D
Sbjct: 101 HPITLMERELVEIFRA--LG------YQAVEG--PEVESEFFNFDALNIPEHHPARDMWD 150
Query: 130 CYYVNRE---------------YLLRAHTTAHQSELIRMGLDN-----FVVFGDVYRRDQ 169
+++ E LLR HT+ Q +R + + VV G V+R +Q
Sbjct: 151 TFWLTGEGFRLEGPLGEEVEGRLLLRTHTSPMQ---VRYMVAHTPPFRIVVPGRVFRFEQ 207
Query: 170 IDSTHFPVFHQADG 183
D+TH VFHQ +G
Sbjct: 208 TDATHEAVFHQLEG 221
Score = 61.9 bits (151), Expect = 5e-11
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 262 LKNSLVKLAKILFGDDIQMRWISEYFPFTHPSWELEIL--LNDKWVEILGCG 311
LK ++ +LA+ LFG D ++R+ YFPF P + + KW+E+ G G
Sbjct: 233 LKGAIYELAQALFGPDSKVRFQPVYFPFVEPGAQFAVWWPEGGKWLELGGAG 284
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural
genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
Length = 549
Score = 61.5 bits (149), Expect = 9e-11
Identities = 15/88 (17%), Positives = 30/88 (34%), Gaps = 14/88 (15%)
Query: 111 ENFDSLLVAKDHVSRSKNDCYYVNRE-------YLLRAHTTAHQSELIRMGLDN------ 157
E +L V+ + + + ++ LR+H T+ + +
Sbjct: 160 EIAKALNVSNEMGLKVLETAFPEFKDLKPESTTLTLRSHMTSGWFITLSSLIKKRKLPLK 219
Query: 158 FVVFGDVYRRDQI-DSTHFPVFHQADGV 184
+RR+Q D +H +H A V
Sbjct: 220 LFSIDRCFRREQREDRSHLMSYHSASCV 247
Score = 61.1 bits (148), Expect = 1e-10
Identities = 9/61 (14%), Positives = 18/61 (29%), Gaps = 4/61 (6%)
Query: 262 LKNSLVKLAKILFGDDIQMRWISEYFPFTHPSWELEILL----NDKWVEILGCGVIRHEI 317
K L + + + + P + E+ +W+E+ GV
Sbjct: 258 GKVVAEGLLAQFGFTKFKFKPDEKKSKYYTPETQTEVYAYHPKLGEWIEVATFGVYSPIA 317
Query: 318 L 318
L
Sbjct: 318 L 318
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 52.5 bits (125), Expect = 9e-08
Identities = 49/301 (16%), Positives = 96/301 (31%), Gaps = 86/301 (28%)
Query: 78 QRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSK---------- 127
+ I++ F FV + D +++ EE D ++++KD VS +
Sbjct: 19 KDILSVFEDAFV--DNFDCKDVQDMPKSILSKEE-IDHIIMSKDAVSGTLRLFWTLLSKQ 75
Query: 128 --------NDCYYVNREYLLRA----------HTTAHQSELIRMGLDNFVVF--GDVYRR 167
+ +N ++L+ T + + R+ DN VF +V R
Sbjct: 76 EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN-QVFAKYNVSRL 134
Query: 168 DQIDSTHFPVFHQADGVHLLNRDQVSR-----GDIGVG-TSLKIMTIFTPTSQEYFY--- 218
QA L + ++ G +G G T + + + Q
Sbjct: 135 QPYLK-----LRQA-----LLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI 184
Query: 219 ----IKKCNKISESIG--QNIVI-----FEQGGVHTDEKQARHTLDATK------VMEQK 261
+K CN + Q ++ + H+ + + + + + +
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS--NIKLRIHSIQAELRRLLKSKP 242
Query: 262 LKNSLVKLAKILFGDDIQMRWISEYFPFTHPSWELEILL--NDKWV-EILGCGVIRHEIL 318
+N L+ +L ++Q F +ILL K V + L H L
Sbjct: 243 YENCLL----VL--LNVQNAKAWNAFNL-----SCKILLTTRFKQVTDFLSAATTTHISL 291
Query: 319 D 319
D
Sbjct: 292 D 292
Score = 42.1 bits (98), Expect = 2e-04
Identities = 45/338 (13%), Positives = 93/338 (27%), Gaps = 96/338 (28%)
Query: 1 MFLRCIVKPVFS-RHTSCYLNLLRFSTHAVKNDVEKATLTINGKTYHTDDYTNVTPKILS 59
+ L+ + N R S A AT N K + D T + L+
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD-NWKHVNCDKLTTIIESSLN 364
Query: 60 YLNKNLHNKKYHPLCMLKQRIINFFYSEFVGKKGTPI----FSIY----DSISPVVTVEE 111
L + K + L + I S+ +V V +
Sbjct: 365 VLEPAEYRKMFDRLSVF--------------PPSAHIPTILLSLIWFDVIKSDVMVVVNK 410
Query: 112 NFDSLLVAKDHVSRSKNDCYYVNREYLLRAHTTAHQSELIRMGLDNFVVFGDVYRRDQID 171
LV K +E + +Y ++
Sbjct: 411 LHKYSLVEKQ------------PKESTISIP--------------------SIYLELKVK 438
Query: 172 STHFPVFHQADGVHLLNRDQVSRGDIGVGTSLKIMTIFTPTSQEYFY------IKKCNKI 225
+ H++ +++ + + + P +YFY +K
Sbjct: 439 LENEYALHRS----IVDHYNIPKT-------FDSDDLIPPYLDQYFYSHIGHHLKNIEH- 486
Query: 226 SESIGQNIVIFEQGGVHTDEKQARHTLDATKVMEQKLKNS-LVKLAKILFGDDIQ-MRWI 283
+ + +F V D + +EQK+++ A + +Q +++
Sbjct: 487 ----PERMTLFRM--VFLD----------FRFLEQKIRHDSTAWNASGSILNTLQQLKFY 530
Query: 284 SEYFPFTHPSWELEILLND--KWVEILGCGVIRHEILD 319
Y P +E L+N ++ + +I + D
Sbjct: 531 KPYICDNDPKYER--LVNAILDFLPKIEENLICSKYTD 566
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.4 bits (125), Expect = 1e-07
Identities = 42/284 (14%), Positives = 78/284 (27%), Gaps = 78/284 (27%)
Query: 56 KILSYLNKNLHNKKYHPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDS 115
K L Y++ + K + + F + ++ +G I ++ + + D+
Sbjct: 63 KFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYL--EGNDIHAL------AAKLLQENDT 114
Query: 116 LLVAKDHVSRSKNDCYYVNREYLLRAHTTAHQSELIRMGLDN----FVVFG--------- 162
LV + + Y R R S L R + +FG
Sbjct: 115 TLVKTKELIK----NYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYF 170
Query: 163 ----DVYRRDQIDSTHF--PVFHQADGVHLLNR-DQVSRGDIGVGTSLKIMT-IFTPTS- 213
D+Y+ + + L + L I+ + P++
Sbjct: 171 EELRDLYQ----TYHVLVGDLIKFSAE-TLSELIRTTLDAEKVFTQGLNILEWLENPSNT 225
Query: 214 --QEYFYIKKCNKIS------ESIGQNIVIFEQGGVHTDEKQARHTLDATKVMEQKL--- 262
++Y IS + +V + G E R L Q L
Sbjct: 226 PDKDYL---LSIPISCPLIGVIQLAHYVVTAKLLGFTPGE--LRSYLKGATGHSQGLVTA 280
Query: 263 ------------KNSLVKLAKILFGDDIQMRWI----SEYFPFT 290
S+ K +LF +I E +P T
Sbjct: 281 VAIAETDSWESFFVSVRKAITVLF-------FIGVRCYEAYPNT 317
Score = 43.1 bits (101), Expect = 1e-04
Identities = 42/226 (18%), Positives = 65/226 (28%), Gaps = 83/226 (36%)
Query: 40 INGKTYHTDDYTNVT--PKILSYLNKNLHNKKYHPLCMLKQRIINF------FYSEFVGK 91
+NG V+ P+ L LN L K L Q I F F + F+
Sbjct: 371 VNGAKNL-----VVSGPPQSLYGLNLTLRKAKAPS--GLDQSRIPFSERKLKFSNRFL-- 421
Query: 92 KGTPIFSIYDSISPVVTVEENFDS-LLV-AKDHVSRSKNDCYYVNREYLLRAHTTAHQSE 149
P+ S P F S LLV A D + D L++ + + + +
Sbjct: 422 ---PVAS------P-------FHSHLLVPASDLI---NKD--------LVKNNVSFNAKD 454
Query: 150 LIRMGLDNFVVFGDVYRRDQIDSTHFPVFHQADGVHLLNRDQVSRGDIGVGTSLKIMTIF 209
+ PV+ DG L +V G I + + I
Sbjct: 455 I-----------------------QIPVYDTFDGSDL----RVLSGSI--SERI-VDCII 484
Query: 210 TPTSQEYFYIKKCNKISESIGQNIVIFEQGGVHTDEKQARHTLDAT 255
+ + + +I+ F GG D T
Sbjct: 485 R----LPVKWETTTQFKAT---HILDFGPGGASGLGVLTHRNKDGT 523
Score = 42.3 bits (99), Expect = 2e-04
Identities = 14/71 (19%), Positives = 25/71 (35%), Gaps = 25/71 (35%)
Query: 8 KPVFSR---------HTSCYLNLLRFSTHAVKNDVEKATLTINGKT-----YHTDD---- 49
K FS H+ LL ++ + D+ K ++ N K Y T D
Sbjct: 413 KLKFSNRFLPVASPFHSH----LLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDL 468
Query: 50 ---YTNVTPKI 57
+++ +I
Sbjct: 469 RVLSGSISERI 479
Score = 36.2 bits (83), Expect = 0.015
Identities = 44/275 (16%), Positives = 78/275 (28%), Gaps = 93/275 (33%)
Query: 21 LLRFSTHAVKNDVEKATLTINGKTYHTDDYTNVTPKIL-----SYL-NKNLH-------N 67
+ +F + V + VE + + + V L YL ++H
Sbjct: 61 VGKFLGY-VSSLVEPSKVG---------QFDQVLNLCLTEFENCYLEGNDIHALAAKLLQ 110
Query: 68 KKYHPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSK 127
+ L K+ I N+ + + K+ P +S +L V
Sbjct: 111 ENDTTLVKTKELIKNYITARIMAKR--PFDKKSNS------------ALF---RAVGEGN 153
Query: 128 NDCYYV------NREYL--LRA-HTT-------------AHQSELIRMGLDNFVVFG--- 162
+ +Y LR + T SELIR LD VF
Sbjct: 154 AQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGL 213
Query: 163 DVYR----------RDQIDS-------------THFPVFHQADGVHLLNRDQVSRGDIGV 199
++ +D + S H+ V + G +G G
Sbjct: 214 NILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGH 273
Query: 200 GTSLKIMTIFTPTSQ--EYFY--IKKCNKISESIG 230
L + + + E F+ ++K + IG
Sbjct: 274 SQGL-VTAVAIAETDSWESFFVSVRKAITVLFFIG 307
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B
O-methyl tyrosine binding, magnesium binding,
aminoacylatio esterification; HET: 0A1 ANP; 1.75A
{Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A*
2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A*
Length = 290
Score = 46.4 bits (110), Expect = 4e-06
Identities = 21/123 (17%), Positives = 41/123 (33%), Gaps = 18/123 (14%)
Query: 68 KKYHPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDHVSRSK 127
++ + L L++ I FF +G F S P++ E + + + D +
Sbjct: 74 ERENYLGKLEREITRFFVD-----RG---FLEIKS--PILIPLEYIERMGIDNDTELSKQ 123
Query: 128 NDCYYVNREYLLRAHTTAHQSELIRMGLDN------FVVFGDVYRRDQIDSTHFPVFHQA 181
+ V++ + LR T + +R G YR++ H F
Sbjct: 124 I--FRVDKNFCLRPMLTPNLYNYLRKLDRALPDPIKIFEIGPCYRKESDGKEHLEEFTML 181
Query: 182 DGV 184
Sbjct: 182 VFW 184
Score = 33.3 bits (76), Expect = 0.083
Identities = 3/39 (7%), Positives = 7/39 (17%), Gaps = 5/39 (12%)
Query: 281 RWISEYFPFTHPSWELEILLNDKWVEILGCGVIRHEILD 319
F + +E+ V +
Sbjct: 212 IVGDSCMVFGDTLDVMH-----GDLELSSALVGPIPLDR 245
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 35.7 bits (81), Expect = 0.007
Identities = 15/54 (27%), Positives = 18/54 (33%), Gaps = 29/54 (53%)
Query: 245 EKQARHTLDATKVMEQKLKNSLVKLAKILFGDDIQMRWISEYFPFTHPSWELEI 298
EKQA K KL+ SL KL Y + P+ L I
Sbjct: 18 EKQA------LK----KLQASL-KL----------------YADDSAPA--LAI 42
>4dkw_A Large terminase protein; DNA-packaging, small terminase, nuclease
FO endonuclease, DNA, DNA-packaging motor, hydrolase;
2.02A {Enterobacteria phage P22}
Length = 211
Score = 32.0 bits (72), Expect = 0.16
Identities = 21/138 (15%), Positives = 35/138 (25%), Gaps = 20/138 (14%)
Query: 127 KNDCYYVNREYLLRAHTTAHQSELI--RMGLDNFVVFGDVYRRDQIDSTHFPVFHQADGV 184
D +Y+ R + +T + D ++ ++ + G
Sbjct: 50 DADVFYLARVWKKSENTAVQAWGAVKSWANKIPVAWPHDGHQHEKGGGEQLKTQYADAGF 109
Query: 185 HLLNRD-QVSRGDIGVGTSLKIMTIFTPTSQEYFYI-KKCNKISESIGQNIVIFEQGGVH 242
+L G V I + + F + C E H
Sbjct: 110 SMLPDHATFPDGGNSV--ESGISELRDLMLEGRFKVFNTCEPF---------FEEFRLYH 158
Query: 243 TDE-----KQARHTLDAT 255
DE K LDAT
Sbjct: 159 RDENGKIVKTNDDVLDAT 176
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A
motif, P-loop, signature motif,
replication/recombination complex; HET: DNA; 1.61A
{Deinococcus radiodurans}
Length = 359
Score = 29.9 bits (68), Expect = 1.0
Identities = 11/77 (14%), Positives = 24/77 (31%), Gaps = 7/77 (9%)
Query: 137 YLL--RAHTTAHQSELIRMGLDNFVVFGDVYRRDQIDSTHFPVFHQADGVHLLNRDQVSR 194
YL +LI+ G V D+ + + + + ++ +
Sbjct: 47 YLALTGQTDAPRIEQLIQAGETEAYVRADLQQGGSLSIQEVGLGRGRRQL-KVDGVRART 105
Query: 195 GDIGVGTSLKIMTIFTP 211
GD+ G ++ P
Sbjct: 106 GDLPRGGAV----WIRP 118
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein,
metal-binding, metalloprotease, protease, hydrolase,
adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB:
2yd0_A* 3qnf_A* 3mdj_A*
Length = 897
Score = 27.0 bits (60), Expect = 9.9
Identities = 9/96 (9%), Positives = 30/96 (31%), Gaps = 12/96 (12%)
Query: 50 YTNVTPKIL-SYLNKNLHNKKYHPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSIS---- 104
Y N + L + + R + S ++G + ++ ++ +
Sbjct: 425 YKNTKNEDLWDSMASICPTDGVKGMDGFCSRSQHSSSSSHWHQEGVDVKTMMNTWTLQKG 484
Query: 105 -PVVTVEENFDSLLV------AKDHVSRSKNDCYYV 133
P++T+ ++ + + ++V
Sbjct: 485 FPLITITVRGRNVHMKQEHYMKGSDGAPDTGYLWHV 520
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.138 0.418
Gapped
Lambda K H
0.267 0.0505 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,934,112
Number of extensions: 286935
Number of successful extensions: 591
Number of sequences better than 10.0: 1
Number of HSP's gapped: 552
Number of HSP's successfully gapped: 37
Length of query: 320
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 226
Effective length of database: 4,077,219
Effective search space: 921451494
Effective search space used: 921451494
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (26.3 bits)