RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7414
         (320 letters)



>d1jjca_ d.104.1.1 (A:) Phenyl-tRNA synthetase (PheRS) alpha
           subunit, PheS {Thermus thermophilus [TaxId: 274]}
          Length = 266

 Score = 79.7 bits (196), Expect = 7e-18
 Identities = 33/140 (23%), Positives = 60/140 (42%), Gaps = 26/140 (18%)

Query: 63  KNLHNKKYHPLCMLKQRIINFFYSEFVGKKGTPIFSIYDSISPVVTVEENFDSLLVAKDH 122
            +L +   HP+ ++++ ++  F +          +   +    V +   NFD+L + + H
Sbjct: 9   ASLFSGGLHPITLMERELVEIFRALG--------YQAVEG-PEVESEFFNFDALNIPEHH 59

Query: 123 VSRSKNDCYYVNRE---------------YLLRAHTTAHQSELIRMGLD--NFVVFGDVY 165
            +R   D +++  E                LLR HT+  Q   +         VV G V+
Sbjct: 60  PARDMWDTFWLTGEGFRLEGPLGEEVEGRLLLRTHTSPMQVRYMVAHTPPFRIVVPGRVF 119

Query: 166 RRDQIDSTHFPVFHQADGVH 185
           R +Q D+TH  VFHQ +G+ 
Sbjct: 120 RFEQTDATHEAVFHQLEGLV 139


>d1dgja2 d.15.4.2 (A:1-80) Aldehyde oxidoreductase, N-terminal
          domain {Desulfovibrio desulfuricans [TaxId: 876]}
          Length = 80

 Score = 25.2 bits (55), Expect = 3.3
 Identities = 9/41 (21%), Positives = 12/41 (29%), Gaps = 2/41 (4%)

Query: 34 EKATLTINGKTYHTDDYTNVTPKILSYLNKNLHNKKYHPLC 74
          E  TL +NG         N    ++  L   L        C
Sbjct: 2  ETKTLIVNGMARRLLVSPNDL--LVDVLRSQLQLTSVKVGC 40


>d1vlba2 d.15.4.2 (A:1-80) Aldehyde oxidoreductase, N-terminal
          domain {Desulfovibrio gigas [TaxId: 879]}
          Length = 80

 Score = 24.8 bits (54), Expect = 5.9
 Identities = 6/40 (15%), Positives = 12/40 (30%), Gaps = 2/40 (5%)

Query: 35 KATLTINGKTYHTDDYTNVTPKILSYLNKNLHNKKYHPLC 74
          +  +T+NG   +          +   L + L        C
Sbjct: 3  QKVITVNGIEQNLFVDAEAL--LSDVLRQQLGLTGVKVGC 40


>d2clyc1 f.45.1.1 (C:5-70) ATPase subunit F6 {Cow (Bos taurus)
           [TaxId: 9913]}
          Length = 66

 Score = 24.3 bits (53), Expect = 6.5
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 9/53 (16%)

Query: 246 KQARHTLDATKVMEQKLKNSLVKLAKILFGDDIQMRWISEYFP---FTHPSWE 295
           + +   +DA    +Q L   L KL ++    D+        FP   F  P +E
Sbjct: 20  QTSGGPVDAGPEYQQDLDRELFKLKQMYGKADM------NTFPNFTFEDPKFE 66


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.138    0.418 

Gapped
Lambda     K      H
   0.267   0.0559    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,232,929
Number of extensions: 57001
Number of successful extensions: 146
Number of sequences better than 10.0: 1
Number of HSP's gapped: 143
Number of HSP's successfully gapped: 12
Length of query: 320
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 235
Effective length of database: 1,240,546
Effective search space: 291528310
Effective search space used: 291528310
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.6 bits)