BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7415
(396 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2KII|A Chain A, Nmr Structure Of The So2144 H-Nox Domain From Shewanella
Oneidensis In The Fe(Ii)co Ligation State
Length = 181
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 10/64 (15%)
Query: 76 NLDIQHVITSLVEFL----SSKHNQVLWPYEDITAKVWTIRSGEQLDIFLRHVLRLFRE- 130
N+ IQ V+ + +FL +S+H V+ ++D T+ V I D+ V +L+ E
Sbjct: 59 NMPIQDVVKAFGQFLFNGLASRHTDVVDKFDDFTSLVMGIH-----DVIHLEVNKLYHEP 113
Query: 131 SLPH 134
SLPH
Sbjct: 114 SLPH 117
>pdb|1FJX|A Chain A, Structure Of Ternary Complex Of Hhai Methyltransferase
Mutant (T250g) In Complex With Dna And Adohcy
pdb|2C7R|A Chain A, Hhai Dna Methyltransferase (T250g Mutant) Complex With
Oligonucleotide Containing 2-Aminopurine As A Target
Base (Gpgc:gmgc) And Sah
Length = 327
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Query: 194 DMQGYVTELLLTLESAVDALESDFRPLDHM-KELFKSTPNLNNKEAGGAGASGKRSPGLN 252
++ +V +LLL +S V+ L D + L +E+ ++TP G G G+R +
Sbjct: 187 ELNTFVKDLLLP-DSEVEHLVIDRKDLVMTNQEIEQTTPKTVRLGIVGKGGQGERI--YS 243
Query: 253 VPGGMMGLCSHMSGVHARSTSYSISYCTRK 282
G +GL ++ G+ A++ Y ++ TRK
Sbjct: 244 TRGIAIGLSAYGGGIFAKTGGYLVNGKTRK 273
>pdb|3RE4|A Chain A, Crystal Structure Of Archaeoglobus Fulgidus Rio1 Kinase
Bound To Toyocamycin.
pdb|3RE4|B Chain B, Crystal Structure Of Archaeoglobus Fulgidus Rio1 Kinase
Bound To Toyocamycin
Length = 258
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 9/74 (12%)
Query: 57 VPEDEVTQPKSIALNPDVKNLDIQHVITSLVEFLSSKHNQVLWPYEDITA-------KVW 109
+ EDE+ P + L ++K LD++ + +VE + + + + D++ KV+
Sbjct: 150 IGEDELPAPTLVELGRELKELDVEGIFNDVVENVKRLYQEAELVHADLSEYNIMYIDKVY 209
Query: 110 TIRSGEQLDIFLRH 123
I G+ + LRH
Sbjct: 210 FIDMGQA--VTLRH 221
>pdb|1ZP9|A Chain A, Crystal Structure Of Full-Legnth A.Fulgidus Rio1 Serine
Kinase Bound To Atp And Mn2+ Ions.
pdb|1ZP9|B Chain B, Crystal Structure Of Full-Legnth A.Fulgidus Rio1 Serine
Kinase Bound To Atp And Mn2+ Ions.
pdb|1ZP9|C Chain C, Crystal Structure Of Full-Legnth A.Fulgidus Rio1 Serine
Kinase Bound To Atp And Mn2+ Ions.
pdb|1ZP9|D Chain D, Crystal Structure Of Full-Legnth A.Fulgidus Rio1 Serine
Kinase Bound To Atp And Mn2+ Ions.
pdb|1ZTF|A Chain A, Crystal Structure Of A.Fulgidus Rio1 Serine Protein Kinase
pdb|1ZTH|A Chain A, Crystal Structure Of A.Fulgidus Rio1 Serine Protein Kinase
Bound To Adp And Manganese Ion
pdb|1ZTH|B Chain B, Crystal Structure Of A.Fulgidus Rio1 Serine Protein Kinase
Bound To Adp And Manganese Ion
pdb|1ZTH|C Chain C, Crystal Structure Of A.Fulgidus Rio1 Serine Protein Kinase
Bound To Adp And Manganese Ion
pdb|1ZTH|D Chain D, Crystal Structure Of A.Fulgidus Rio1 Serine Protein Kinase
Bound To Adp And Manganese Ion
Length = 258
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 9/74 (12%)
Query: 57 VPEDEVTQPKSIALNPDVKNLDIQHVITSLVEFLSSKHNQVLWPYEDITA-------KVW 109
+ EDE+ P + L ++K LD++ + +VE + + + + D++ KV+
Sbjct: 150 IGEDELPAPTLVELGRELKELDVEGIFNDVVENVKRLYQEAELVHADLSEYNIXYIDKVY 209
Query: 110 TIRSGEQLDIFLRH 123
I G+ + LRH
Sbjct: 210 FIDXGQA--VTLRH 221
>pdb|2ILR|A Chain A, Crystal Structure Of Human Fanconi Anemia Protein E C-
Terminal Domain
Length = 264
Score = 28.1 bits (61), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 18/23 (78%)
Query: 372 SPSQTKLVYSQIKVPQLNQAGLL 394
SPSQ L+ +Q+++PQL+ GLL
Sbjct: 48 SPSQMDLLCAQLQLPQLSDLGLL 70
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,276,157
Number of Sequences: 62578
Number of extensions: 425167
Number of successful extensions: 1045
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1044
Number of HSP's gapped (non-prelim): 7
length of query: 396
length of database: 14,973,337
effective HSP length: 101
effective length of query: 295
effective length of database: 8,652,959
effective search space: 2552622905
effective search space used: 2552622905
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)