Query psy7415
Match_columns 396
No_of_seqs 121 out of 144
Neff 3.3
Searched_HMMs 46136
Date Fri Aug 16 17:42:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7415.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7415hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14228 MOR2-PAG1_mid: Cell m 100.0 4.7E-34 1E-38 313.1 12.8 121 74-197 1000-1120(1120)
2 KOG1825|consensus 99.4 9.9E-14 2.1E-18 158.7 6.0 155 80-236 1638-1792(2206)
3 KOG1825|consensus 99.4 2.3E-13 5E-18 155.8 4.1 116 95-217 1563-1678(2206)
4 PF12755 Vac14_Fab1_bd: Vacuol 74.6 10 0.00022 32.0 6.0 70 113-203 21-91 (97)
5 PF13877 RPAP3_C: Potential Mo 42.0 51 0.0011 26.8 4.5 36 169-207 41-76 (94)
6 PF13513 HEAT_EZ: HEAT-like re 39.8 18 0.00039 26.1 1.4 49 154-202 3-51 (55)
7 PF08471 Ribonuc_red_2_N: Clas 36.6 84 0.0018 27.3 5.1 59 137-206 13-90 (93)
8 COG1955 FlaJ Archaeal flagella 29.1 88 0.0019 34.3 5.0 59 167-226 111-170 (527)
9 PF15340 COPR5: Cooperator of 22.7 53 0.0011 30.5 1.7 24 358-381 120-143 (152)
10 cd00020 ARM Armadillo/beta-cat 21.5 1E+02 0.0023 23.9 3.0 51 156-206 25-76 (120)
No 1
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=100.00 E-value=4.7e-34 Score=313.12 Aligned_cols=121 Identities=39% Similarity=0.657 Sum_probs=114.3
Q ss_pred CCCcchHHHHHHHHHHHHhcCCCCCCCCCCCCccccCCCChHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHhhhhccc
Q psy7415 74 VKNLDIQHVITSLVEFLSSKHNQVLWPYEDITAKVWTIRSGEQLDIFLRHVLRLFRESLPHALISERWAQTALQLGLSCG 153 (396)
Q Consensus 74 ~s~~~~~e~ik~LIe~L~sr~~~~LW~yED~s~k~~~irSp~qM~~Lvr~VV~vFs~s~P~~~Lre~Wg~vAL~WATSCs 153 (396)
.+..+.++.|+++|++|+.++++++|.|||.+++++.++++++|+.|+++|+++|. .+|+ |+++||++||+|||+||
T Consensus 1000 ~s~~~~~~~i~~li~~l~~~~~~~lW~yeD~~~~~~~~~s~~~l~~lv~~vv~~~~-~~~~--L~~~W~~~AL~WATsC~ 1076 (1120)
T PF14228_consen 1000 DSDSEQKQSIKSLIEFLRSRDGSPLWSYEDSSGKRTEIPSPKQLSSLVRSVVEVFS-FQPD--LREQWGRVALNWATSCP 1076 (1120)
T ss_pred ccchhhHHHHHHHHHHHHhcCCCccccCCCCCccCCCCCCHHHHHHHHHHHHHHhc-CChH--HHHHHHHHHHHHHhcCc
Confidence 44566789999999999999999999999999999999999999999999999996 3454 99999999999999999
Q ss_pred chhhhhhHHHHHHhccCCCChhHHHHHHHHHHHhhccCCcchHH
Q psy7415 154 SRHYAGRSLQIFRALRVPINSRMLTDILSRLVETVAETGEDMQG 197 (396)
Q Consensus 154 sRHiAcRSFQIFRaL~ppLd~~mLsDMLaRLsnTIaD~~~DiQg 197 (396)
|||+|||||||||||+|++|++||+|||+||++||+|+++|++|
T Consensus 1077 vRHlAcRSfQIFR~L~~~l~~~ml~dlL~rL~~~~~~~~~~v~~ 1120 (1120)
T PF14228_consen 1077 VRHLACRSFQIFRALLPSLDSDMLADLLARLSKTISDPSPEVLG 1120 (1120)
T ss_pred hHHHHHHHHHHHhHhcCCCCHHHHHHHHHHHHHHhCCCcccccC
Confidence 99999999999999999999999999999999999999999986
No 2
>KOG1825|consensus
Probab=99.43 E-value=9.9e-14 Score=158.71 Aligned_cols=155 Identities=15% Similarity=-0.023 Sum_probs=146.4
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCCccccCCCChHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHhhhhcccchhhhh
Q psy7415 80 QHVITSLVEFLSSKHNQVLWPYEDITAKVWTIRSGEQLDIFLRHVLRLFRESLPHALISERWAQTALQLGLSCGSRHYAG 159 (396)
Q Consensus 80 ~e~ik~LIe~L~sr~~~~LW~yED~s~k~~~irSp~qM~~Lvr~VV~vFs~s~P~~~Lre~Wg~vAL~WATSCssRHiAc 159 (396)
.+.+.+.+.++.++...++|+|||...++++..+++++..++++++++|....+ +...+|..+||..|.+...||+|.
T Consensus 1638 ~~~~~~~l~~~~s~~~~~l~~~ed~il~~~n~~~~e~ls~~l~~~~ql~~~~~a--~~ehe~e~i~~~~~lss~~~~~~~ 1715 (2206)
T KOG1825|consen 1638 LEDFRERLPLTISDTFVSLDSSEDIILRTCNSLLAELLSSLLGSHLQLLWVENA--DGEHEQEFIELIKYLSSKRGSMMW 1715 (2206)
T ss_pred HHHHHHhhceeeccccccccchhHHHHHhhhhHHHHhhHHHHHHHHHHHHhhcc--chhHHHHHHHHHHHHHHhhhhhhc
Confidence 566677778888889999999999999999999999999999999999999987 499999999999999999999999
Q ss_pred hHHHHHHhccCCCChhHHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHHhhhcCCCchhhhhhhhhcCCCCCCc
Q psy7415 160 RSLQIFRALRVPINSRMLTDILSRLVETVAETGEDMQGYVTELLLTLESAVDALESDFRPLDHMKELFKSTPNLNNK 236 (396)
Q Consensus 160 RSFQIFRaL~ppLd~~mLsDMLaRLsnTIaD~~~DiQgFvmEILlTL~aiV~~L~~~~k~~dl~~~l~~stp~~~~k 236 (396)
|+|||++++..+.....+++++.|+.++++.++.+.|+|+||.|++|+.+.++.-+|.++.+++..+..++|++-+.
T Consensus 1716 ~~~~~~~~~~~~Ps~~~~~~l~~q~v~~~G~~~d~s~~~~~~~ll~L~~~~d~~~~~~t~~~~l~~l~~~~p~~l~s 1792 (2206)
T KOG1825|consen 1716 ENEDPQVVREDFPSNWLGSALGLQMVDAIGFQSDNSEEITTEFLLWLMDCKDNHLACRTHSRLLALLPVSLPDALVS 1792 (2206)
T ss_pred CccchhHHhhcCCcccchhHHHHHHHHHHhccccchHHHHHHHHHHHHhccccccchhhHHHHHHHHhhcChHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998888775443
No 3
>KOG1825|consensus
Probab=99.37 E-value=2.3e-13 Score=155.80 Aligned_cols=116 Identities=29% Similarity=0.333 Sum_probs=98.8
Q ss_pred CCCCCCCCCCCccccCCCChHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHhhhhcccchhhhhhHHHHHHhccCCCCh
Q psy7415 95 NQVLWPYEDITAKVWTIRSGEQLDIFLRHVLRLFRESLPHALISERWAQTALQLGLSCGSRHYAGRSLQIFRALRVPINS 174 (396)
Q Consensus 95 ~~~LW~yED~s~k~~~irSp~qM~~Lvr~VV~vFs~s~P~~~Lre~Wg~vAL~WATSCssRHiAcRSFQIFRaL~ppLd~ 174 (396)
...+|.|...+..+ .+++.-|.. ..... ....+|. |.+.|+.+|+.|||+|+.||+||+||||||.|.+.+++
T Consensus 1563 ~~~~~s~~~~~~~~--s~ss~~l~~-~~n~~--~~~~~~~--i~~~~~~va~~~stt~~~~~~a~~~~~if~sll~~~~~ 1635 (2206)
T KOG1825|consen 1563 GNVLSSYSLRSRHV--SRSSGDLLI-TPNSG--EDSLHSE--IAMIWVNVALLWSTTCGHRQHACTSFQIFRSLLADLDA 1635 (2206)
T ss_pred HHHHHHHhhhcccc--ccChhhHhh-hhhcc--ccccCch--HHHHHHHHHhhhccccccccccccHHHHHHhhhhhHHH
Confidence 45688888766543 556665555 22222 3345666 99999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHHhhhcCC
Q psy7415 175 RMLTDILSRLVETVAETGEDMQGYVTELLLTLESAVDALESDF 217 (396)
Q Consensus 175 ~mLsDMLaRLsnTIaD~~~DiQgFvmEILlTL~aiV~~L~~~~ 217 (396)
+|+.||++||..|++|...++++|.++|++|+++++.++.+++
T Consensus 1636 e~~~~~~~~l~~~~s~~~~~l~~~ed~il~~~n~~~~e~ls~~ 1678 (2206)
T KOG1825|consen 1636 EMLEDFRERLPLTISDTFVSLDSSEDIILRTCNSLLAELLSSL 1678 (2206)
T ss_pred HHHHHHHHhhceeeccccccccchhHHHHHhhhhHHHHhhHHH
Confidence 9999999999999999999999999999999999999998764
No 4
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=74.64 E-value=10 Score=31.96 Aligned_cols=70 Identities=29% Similarity=0.378 Sum_probs=54.3
Q ss_pred ChHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHhhhhcccchhhhhhHH-HHHHhccCCCChhHHHHHHHHHHHhhccC
Q psy7415 113 SGEQLDIFLRHVLRLFRESLPHALISERWAQTALQLGLSCGSRHYAGRSL-QIFRALRVPINSRMLTDILSRLVETVAET 191 (396)
Q Consensus 113 Sp~qM~~Lvr~VV~vFs~s~P~~~Lre~Wg~vAL~WATSCssRHiAcRSF-QIFRaL~ppLd~~mLsDMLaRLsnTIaD~ 191 (396)
..+++..++.-|+..|.+.-+ .||.+||.++ +|.+.....+ -.-+.++..-|+..++|+
T Consensus 21 ~~~~l~~Il~pVL~~~~D~d~-------------------rVRy~AcEaL~ni~k~~~~~~-l~~f~~IF~~L~kl~~D~ 80 (97)
T PF12755_consen 21 ISKYLDEILPPVLKCFDDQDS-------------------RVRYYACEALYNISKVARGEI-LPYFNEIFDALCKLSADP 80 (97)
T ss_pred HHHHHHHHHHHHHHHcCCCcH-------------------HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCC
Confidence 478899999999999986632 3788899985 6666665444 446789999999999999
Q ss_pred CcchHHHHHHHH
Q psy7415 192 GEDMQGYVTELL 203 (396)
Q Consensus 192 ~~DiQgFvmEIL 203 (396)
++.++.-+ |+|
T Consensus 81 d~~Vr~~a-~~L 91 (97)
T PF12755_consen 81 DENVRSAA-ELL 91 (97)
T ss_pred chhHHHHH-HHH
Confidence 99998877 444
No 5
>PF13877 RPAP3_C: Potential Monad-binding region of RPAP3
Probab=42.01 E-value=51 Score=26.75 Aligned_cols=36 Identities=22% Similarity=0.407 Sum_probs=26.1
Q ss_pred cCCCChhHHHHHHHHHHHhhccCCcchHHHHHHHHHHHH
Q psy7415 169 RVPINSRMLTDILSRLVETVAETGEDMQGYVTELLLTLE 207 (396)
Q Consensus 169 ~ppLd~~mLsDMLaRLsnTIaD~~~DiQgFvmEILlTL~ 207 (396)
...++.++|.+||..|.......+. ..+.++|..|.
T Consensus 41 ~~~l~~~~L~~il~~l~~~~~~~~~---~~i~~~L~~L~ 76 (94)
T PF13877_consen 41 KNSLEPEFLSEILEALNEHFIPEDP---EFIFEILEALS 76 (94)
T ss_pred HccCCHHHHHHHHHHHHHHHccCCH---HHHHHHHHHhc
Confidence 3479999999999999986654333 27777766654
No 6
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=39.75 E-value=18 Score=26.05 Aligned_cols=49 Identities=12% Similarity=0.134 Sum_probs=32.6
Q ss_pred chhhhhhHHHHHHhccCCCChhHHHHHHHHHHHhhccCCcchHHHHHHH
Q psy7415 154 SRHYAGRSLQIFRALRVPINSRMLTDILSRLVETVAETGEDMQGYVTEL 202 (396)
Q Consensus 154 sRHiAcRSFQIFRaL~ppLd~~mLsDMLaRLsnTIaD~~~DiQgFvmEI 202 (396)
+|+-|++.+--+-...+......+.+++..|...+.|++++++.-+..-
T Consensus 3 vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~a 51 (55)
T PF13513_consen 3 VRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWA 51 (55)
T ss_dssp HHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHH
T ss_pred HHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 5677777664433334455566778888888888888777777665443
No 7
>PF08471 Ribonuc_red_2_N: Class II vitamin B12-dependent ribonucleotide reductase; InterPro: IPR013678 This domain is found to the N terminus of the ribonucleotide reductase barrel domain (IPR000788 from INTERPRO). It occurs in bacterial class II ribonucleotide reductase proteins which depend upon coenzyme B12 (deoxyadenosylcobalamine) []. ; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0050897 cobalt ion binding, 0055114 oxidation-reduction process
Probab=36.65 E-value=84 Score=27.27 Aligned_cols=59 Identities=29% Similarity=0.450 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhhhhcccchhhhhhHHHHHHhccCCCC----------hhHHHHHHHHHHHhhcc---------CCcchHH
Q psy7415 137 ISERWAQTALQLGLSCGSRHYAGRSLQIFRALRVPIN----------SRMLTDILSRLVETVAE---------TGEDMQG 197 (396)
Q Consensus 137 Lre~Wg~vAL~WATSCssRHiAcRSFQIFRaL~ppLd----------~~mLsDMLaRLsnTIaD---------~~~DiQg 197 (396)
+-..|+++|.+--+ .. -||..-.|-. ...+..+++||++|+.+ ..+|.+.
T Consensus 13 vP~~WSq~AtdI~A--------qK---YFRk~Gvp~~~~~~~~~~g~E~S~rQv~~Rla~tw~~wG~~~GYF~t~eDA~~ 81 (93)
T PF08471_consen 13 VPEFWSQVATDILA--------QK---YFRKAGVPARDPDEEARFGGETSVRQVFDRLAGTWTYWGWKGGYFATEEDAEA 81 (93)
T ss_pred cCchHHHHHHHHHH--------HH---HhhhcCCCcccccccccccccchHHHHHHHHHHHHHHHHHhCCCcCCHHHHHH
Confidence 56789999988644 33 4567777666 88999999999999987 3378888
Q ss_pred HHHHHHHHH
Q psy7415 198 YVTELLLTL 206 (396)
Q Consensus 198 FvmEILlTL 206 (396)
|--|+--.|
T Consensus 82 FydEl~~mL 90 (93)
T PF08471_consen 82 FYDELTYML 90 (93)
T ss_pred HHHHHHHHH
Confidence 888875443
No 8
>COG1955 FlaJ Archaeal flagella assembly protein J [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=29.08 E-value=88 Score=34.31 Aligned_cols=59 Identities=25% Similarity=0.400 Sum_probs=46.5
Q ss_pred hccCCCChhHHHHHHHHHHHhhccCCcchHHHH-HHHHHHHHHHHHhhhcCCCchhhhhhh
Q psy7415 167 ALRVPINSRMLTDILSRLVETVAETGEDMQGYV-TELLLTLESAVDALESDFRPLDHMKEL 226 (396)
Q Consensus 167 aL~ppLd~~mLsDMLaRLsnTIaD~~~DiQgFv-mEILlTL~aiV~~L~~~~k~~dl~~~l 226 (396)
-+...+..+-++|.|.||++.++. ++|.+.|. -|...|+..--+.-+-.+..+|+++++
T Consensus 111 ~iA~k~~~~~l~dfL~Rla~ai~s-Ge~~~eFl~~E~~~~~~~y~~~Yer~LeSl~~~~di 170 (527)
T COG1955 111 FIAKKTPSEILADFLDRLAYALDS-GEDLKEFLEREQDTTMDEYETEYERALESLDVWKDI 170 (527)
T ss_pred HHHhhCcHHHHHHHHHHHHHhhhc-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455678899999999999999976 55666665 478888888777777777788887776
No 9
>PF15340 COPR5: Cooperator of PRMT5 family
Probab=22.67 E-value=53 Score=30.45 Aligned_cols=24 Identities=33% Similarity=0.764 Sum_probs=21.5
Q ss_pred cccccCCCCCCCCCCCCccceeee
Q psy7415 358 PQLYRPSWSTPCSKSPSQTKLVYS 381 (396)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~ 381 (396)
-|+|-|||-.|----|--.|.||.
T Consensus 120 DmIYDPSWHHPpPLiPHYSKMVFE 143 (152)
T PF15340_consen 120 DMIYDPSWHHPPPLIPHYSKMVFE 143 (152)
T ss_pred CcccCCccCCCCCCcccchheeee
Confidence 379999999999999999999985
No 10
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=21.49 E-value=1e+02 Score=23.87 Aligned_cols=51 Identities=18% Similarity=0.053 Sum_probs=26.3
Q ss_pred hhhhhHHHHHHhccCCCChhHHH-HHHHHHHHhhccCCcchHHHHHHHHHHH
Q psy7415 156 HYAGRSLQIFRALRVPINSRMLT-DILSRLVETVAETGEDMQGYVTELLLTL 206 (396)
Q Consensus 156 HiAcRSFQIFRaL~ppLd~~mLs-DMLaRLsnTIaD~~~DiQgFvmEILlTL 206 (396)
..|++.+.-+..-.+.....++. +++..|.+.+.+.+++++..+.-+|.-|
T Consensus 25 ~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l 76 (120)
T cd00020 25 REAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNL 76 (120)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 33333333333332333333333 5666666667776677776666555554
Done!