Query psy7415
Match_columns 396
No_of_seqs 121 out of 144
Neff 3.3
Searched_HMMs 29240
Date Fri Aug 16 17:42:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7415.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7415hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3f1x_A Serine acetyltransferas 21.9 5.3E+02 0.018 24.7 10.2 118 72-206 31-154 (310)
2 2qk2_A LP04448P; mini spindles 20.1 4E+02 0.014 22.6 10.5 97 114-212 93-209 (242)
3 3b2a_A TON_1937, putative unch 19.5 1.6E+02 0.0055 28.4 5.8 57 150-206 84-142 (265)
4 1b3u_A Protein (protein phosph 18.3 5.9E+02 0.02 23.8 9.4 50 154-206 142-191 (588)
5 2qk1_A Protein STU2; STU2P, XM 17.7 4.5E+02 0.015 23.3 8.1 37 176-212 187-224 (249)
6 2qk2_A LP04448P; mini spindles 15.1 1.9E+02 0.0065 24.7 4.8 52 154-206 73-125 (242)
7 2bpt_A Importin beta-1 subunit 14.4 6.5E+02 0.022 25.0 9.0 53 154-206 469-527 (861)
8 3s4w_B Protein FACD2, fanconi 13.2 1.2E+03 0.041 27.0 11.7 100 120-223 207-349 (1323)
9 1qgr_A Protein (importin beta 11.4 7.9E+02 0.027 24.5 8.6 39 176-214 502-540 (876)
10 1u6g_C TIP120 protein, CAND1; 10.6 6E+02 0.021 27.2 7.9 53 154-206 102-161 (1230)
No 1
>3f1x_A Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 A6KZB9_BACV8, structural genomics, P protein structure initiative; 2.00A {Bacteroides vulgatus atcc 8482}
Probab=21.91 E-value=5.3e+02 Score=24.66 Aligned_cols=118 Identities=8% Similarity=0.070 Sum_probs=63.9
Q ss_pred CCCCCcchHHHHHHHHHHHHhcCCCCCCCCCCCCccccCCCChHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHhhhhc
Q psy7415 72 PDVKNLDIQHVITSLVEFLSSKHNQVLWPYEDITAKVWTIRSGEQLDIFLRHVLRLFRESLPHALISERWAQTALQLGLS 151 (396)
Q Consensus 72 ~d~s~~~~~e~ik~LIe~L~sr~~~~LW~yED~s~k~~~irSp~qM~~Lvr~VV~vFs~s~P~~~Lre~Wg~vAL~WATS 151 (396)
-|+..+|+++.+.++|+.|+.--+--.....+.+ .+.+..++.+.++-.. ..|.+++.. +|..+..
T Consensus 31 ~~~~~~p~~~~~~~~~~~~~~~~fp~~~~~~~~~--------~~~~~~~~~~~~~~~~-----~~l~~q~~~-~~~~~~~ 96 (310)
T 3f1x_A 31 KDGDPLPSAKSLYKIVELARAIIFPGYFGNSTVN--------SHTINYHIGVNVETLF-----GLLTEQILA-GLCFGQE 96 (310)
T ss_dssp CTTCCCCCHHHHHHHHHHHHHHHSTTTTSCSSCC--------GGGHHHHHHHHHHHHH-----HHHHHHHHH-HHHHC--
T ss_pred CCCCCCcCHHHHHHHHHHHHHhcCCCCCCCCccc--------hhhhHhHHHHHHHHHH-----HHHHHHHHH-HHhhccc
Confidence 3567789999999999999975332233333333 4557777777766653 236777643 4555422
Q ss_pred --ccch----hhhhhHHHHHHhccCCCChhHHHHHHHHHHHhhccCCcchHHHHHHHHHHH
Q psy7415 152 --CGSR----HYAGRSLQIFRALRVPINSRMLTDILSRLVETVAETGEDMQGYVTELLLTL 206 (396)
Q Consensus 152 --CssR----HiAcRSFQIFRaL~ppLd~~mLsDMLaRLsnTIaD~~~DiQgFvmEILlTL 206 (396)
|... ....|.-+|+......+ +..+..+-..+.. +-+.++....+ .|++++.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~i~~~l~~di~~-~~~~DPa~~s~-~e~l~~y 154 (310)
T 3f1x_A 97 NSKNATDDNEPCRETASLLAARFISKL-PELRRILATDVEA-AYYGDPAATCF-GEIISCY 154 (310)
T ss_dssp -------CCCCCHHHHHHHHHHHHTTH-HHHHHHHHHHHHH-HHHTCTTCCCH-HHHHHHC
T ss_pred ccccccchhhhHHHHHHHHHHHHHHhC-HHHHHHHHHHHHH-HhcCCchhcCc-ceEEEeC
Confidence 2111 34567778887776543 3333333333322 23445555444 3555543
No 2
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=20.13 E-value=4e+02 Score=22.62 Aligned_cols=97 Identities=16% Similarity=0.178 Sum_probs=60.2
Q ss_pred hHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHhhhhcccchhhh---------------hhHHHHHHh-cc---CC-CC
Q psy7415 114 GEQLDIFLRHVLRLFRESLPHALISERWAQTALQLGLSCGSRHYA---------------GRSLQIFRA-LR---VP-IN 173 (396)
Q Consensus 114 p~qM~~Lvr~VV~vFs~s~P~~~Lre~Wg~vAL~WATSCssRHiA---------------cRSFQIFRa-L~---pp-Ld 173 (396)
.+.+..++..+++.|.+..+ .+++.=....-.++.+++..++- .-....+.. +. +. ..
T Consensus 93 ~~~~~~ilp~ll~~l~d~~~--~vr~~a~~aL~~~~~~~~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~ 170 (242)
T 2qk2_A 93 SNYASACVPSLLEKFKEKKP--NVVTALREAIDAIYASTSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALN 170 (242)
T ss_dssp HHHHHHHHHHHHHGGGCCCH--HHHHHHHHHHHHHHTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCC
T ss_pred HHHHHHHHHHHHHHHcCCCH--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCcc
Confidence 35667777778888876653 36655444444455544432211 111122222 21 21 34
Q ss_pred hhHHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHHh
Q psy7415 174 SRMLTDILSRLVETVAETGEDMQGYVTELLLTLESAVDA 212 (396)
Q Consensus 174 ~~mLsDMLaRLsnTIaD~~~DiQgFvmEILlTL~aiV~~ 212 (396)
...+..++--|.+.+.|...+++.-+.+.+.+|-..+..
T Consensus 171 ~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~ 209 (242)
T 2qk2_A 171 KKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGD 209 (242)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCH
Confidence 567788888999999999999999999988888877743
No 3
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=19.52 E-value=1.6e+02 Score=28.43 Aligned_cols=57 Identities=21% Similarity=0.264 Sum_probs=50.8
Q ss_pred hcccchhhhhhHHHHHHhc--cCCCChhHHHHHHHHHHHhhccCCcchHHHHHHHHHHH
Q psy7415 150 LSCGSRHYAGRSLQIFRAL--RVPINSRMLTDILSRLVETVAETGEDMQGYVTELLLTL 206 (396)
Q Consensus 150 TSCssRHiAcRSFQIFRaL--~ppLd~~mLsDMLaRLsnTIaD~~~DiQgFvmEILlTL 206 (396)
+-.....+|-|+..+.+.| .-|++...+.-+.+-|.+++....+-.+.|+.|++--|
T Consensus 84 lk~~dEkval~A~r~L~~LLe~vpL~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl 142 (265)
T 3b2a_A 84 LSQENEKVTIKALRALGYLVKDVPMGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL 142 (265)
T ss_dssp CCSTTHHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC
T ss_pred HhccchhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC
Confidence 3556788999999999998 47899999999999999999999999999999998766
No 4
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=18.27 E-value=5.9e+02 Score=23.80 Aligned_cols=50 Identities=12% Similarity=0.064 Sum_probs=37.4
Q ss_pred chhhhhhHHHHHHhccCCCChhHHHHHHHHHHHhhccCCcchHHHHHHHHHHH
Q psy7415 154 SRHYAGRSLQIFRALRVPINSRMLTDILSRLVETVAETGEDMQGYVTELLLTL 206 (396)
Q Consensus 154 sRHiAcRSFQIFRaL~ppLd~~mLsDMLaRLsnTIaD~~~DiQgFvmEILlTL 206 (396)
+|+.|++. +..+.+.+...+...++.-|.+.+.|++++++..+.+.|-.+
T Consensus 142 ~R~~a~~~---l~~~~~~~~~~~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l 191 (588)
T 1b3u_A 142 SRTSACGL---FSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEF 191 (588)
T ss_dssp HHHHHGGG---HHHHTTTSCHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HHHHHHhcCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 56777764 445556666777788888888888899999998888877665
No 5
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=17.70 E-value=4.5e+02 Score=23.34 Aligned_cols=37 Identities=14% Similarity=0.186 Sum_probs=32.6
Q ss_pred HH-HHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHHh
Q psy7415 176 ML-TDILSRLVETVAETGEDMQGYVTELLLTLESAVDA 212 (396)
Q Consensus 176 mL-sDMLaRLsnTIaD~~~DiQgFvmEILlTL~aiV~~ 212 (396)
-+ ..++-.|.+.+.|.+.+++.-++|.|.++-.+|.+
T Consensus 187 ~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~ 224 (249)
T 2qk1_A 187 YLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGM 224 (249)
T ss_dssp HHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCH
Confidence 46 78888999999999999999999999998888864
No 6
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=15.13 E-value=1.9e+02 Score=24.71 Aligned_cols=52 Identities=17% Similarity=0.237 Sum_probs=38.8
Q ss_pred chhhhhhHHHHHH-hccCCCChhHHHHHHHHHHHhhccCCcchHHHHHHHHHHH
Q psy7415 154 SRHYAGRSLQIFR-ALRVPINSRMLTDILSRLVETVAETGEDMQGYVTELLLTL 206 (396)
Q Consensus 154 sRHiAcRSFQIFR-aL~ppLd~~mLsDMLaRLsnTIaD~~~DiQgFvmEILlTL 206 (396)
+|..||+.+.-+- .|.+.+ ...+..++--|-+.++|....++..+.+.|.++
T Consensus 73 V~~~a~~~l~~la~~l~~~~-~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~ 125 (242)
T 2qk2_A 73 LVAMAGKCLALLAKGLAKRF-SNYASACVPSLLEKFKEKKPNVVTALREAIDAI 125 (242)
T ss_dssp HHHHHHHHHHHHHHHHGGGG-HHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 4666777775443 445544 567888999999999999999998888777665
No 7
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=14.37 E-value=6.5e+02 Score=25.01 Aligned_cols=53 Identities=8% Similarity=0.036 Sum_probs=29.5
Q ss_pred chhhhhhHHHHHHh-cc---CCCChhHHHHHHHHHHHhhccCC--cchHHHHHHHHHHH
Q psy7415 154 SRHYAGRSLQIFRA-LR---VPINSRMLTDILSRLVETVAETG--EDMQGYVTELLLTL 206 (396)
Q Consensus 154 sRHiAcRSFQIFRa-L~---ppLd~~mLsDMLaRLsnTIaD~~--~DiQgFvmEILlTL 206 (396)
+|..||..+.-|-. +. +..-..-+..++..|.+.+.+.+ ++++..+++.+..|
T Consensus 469 v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l 527 (861)
T 2bpt_A 469 VATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTM 527 (861)
T ss_dssp HHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHH
Confidence 56677877754333 22 12223456777777777776433 56666555544433
No 8
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=13.16 E-value=1.2e+03 Score=27.01 Aligned_cols=100 Identities=14% Similarity=0.189 Sum_probs=72.2
Q ss_pred HHHHHHHHhhhcCChhHHHHHHHHHHHhhhhcccchhhhhhHHHHHHhccCCCChhHHHHHHHHHHHhhcc---------
Q psy7415 120 FLRHVLRLFRESLPHALISERWAQTALQLGLSCGSRHYAGRSLQIFRALRVPINSRMLTDILSRLVETVAE--------- 190 (396)
Q Consensus 120 Lvr~VV~vFs~s~P~~~Lre~Wg~vAL~WATSCssRHiAcRSFQIFRaL~ppLd~~mLsDMLaRLsnTIaD--------- 190 (396)
|+--|+++|+...=+.++.++--+.++....+|+...+.. |.|-|+.+.++..+..++..|-+-+--
T Consensus 207 L~~~iLdaLs~L~Ls~~~l~~vr~~vl~~L~s~~~e~LP~----lIkFLL~s~t~~~~~evI~~LR~~L~~~~~~~p~~~ 282 (1323)
T 3s4w_B 207 LTVPILDVFSSLRLDPNFLSKIRQLVMGKLSSVRLEDFPV----IVKFLLHSVTDTTSLEVIAELRENLNVQQFILPSRI 282 (1323)
T ss_dssp THHHHHHHHHHSCCCHHHHHHHHHHHHHSTTSSCTTHHHH----HHHHHHHSCSSTTHHHHHHHHHHHHHCC--------
T ss_pred hHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCChhhhHH----HHHHHHHhCCHhhHHHHHHHHHHHcCccccccchhh
Confidence 4556778887776566788899999999999999988875 677788778888888888888764422
Q ss_pred ------------------CCcchHHHHHHHHHHHHHH--------------HHhhhc--CCCchhhh
Q psy7415 191 ------------------TGEDMQGYVTELLLTLESA--------------VDALES--DFRPLDHM 223 (396)
Q Consensus 191 ------------------~~~DiQgFvmEILlTL~ai--------------V~~L~~--~~k~~dl~ 223 (396)
...+.+...++|+.+|+.. |+..+. +.|..|+.
T Consensus 283 ~~s~~~~k~~~~~~~~~~~~~s~~~~~~lild~lks~l~~~k~i~eAwlK~I~~~~~~~~hk~~Dl~ 349 (1323)
T 3s4w_B 283 QASQSKLKSKGLASSSGNQENSDKDCIVLVFDVIKSAIRYEKTISEAWFKAIERIESAAEHKSLDVV 349 (1323)
T ss_dssp --------------------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHGGGSTTCCTHHHH
T ss_pred hhhhhhhhccccccCCccccccccchHHHHHHHHHHHHhcChHHHHHHHHHHhCCCcccccchhHHH
Confidence 1112466777777777765 444543 68889983
No 9
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=11.45 E-value=7.9e+02 Score=24.46 Aligned_cols=39 Identities=15% Similarity=0.149 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHHhhh
Q psy7415 176 MLTDILSRLVETVAETGEDMQGYVTELLLTLESAVDALE 214 (396)
Q Consensus 176 mLsDMLaRLsnTIaD~~~DiQgFvmEILlTL~aiV~~L~ 214 (396)
.+..++..|...+.+.+.+....-..++.+|..++....
T Consensus 502 ~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~ 540 (876)
T 1qgr_A 502 SFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSA 540 (876)
T ss_dssp THHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCc
Confidence 356666666666655432211222333444444444443
No 10
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=10.62 E-value=6e+02 Score=27.23 Aligned_cols=53 Identities=15% Similarity=0.194 Sum_probs=34.8
Q ss_pred chhhhhhHHHHHHhccCCC------ChhHHHHHHHHHHHhhcc-CCcchHHHHHHHHHHH
Q psy7415 154 SRHYAGRSLQIFRALRVPI------NSRMLTDILSRLVETVAE-TGEDMQGYVTELLLTL 206 (396)
Q Consensus 154 sRHiAcRSFQIFRaL~ppL------d~~mLsDMLaRLsnTIaD-~~~DiQgFvmEILlTL 206 (396)
+|+.|++.+.-+-....+- .......++..|-+.+.+ ++.+++..++++|..+
T Consensus 102 vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~ 161 (1230)
T 1u6g_C 102 LRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADM 161 (1230)
T ss_dssp HHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence 4777777765444333322 244678888888888874 6677888887777654
Done!