Query psy7415
Match_columns 396
No_of_seqs 121 out of 144
Neff 3.3
Searched_HMMs 13730
Date Fri Aug 16 17:43:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7415.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/7415hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1w27a_ a.127.1.2 (A:) Phenyla 26.7 71 0.0052 32.0 7.9 105 70-178 526-650 (692)
2 d1b3ua_ a.118.1.2 (A:) Constan 25.3 16 0.0012 32.5 2.5 48 154-207 535-586 (588)
3 d1u6gc_ a.118.1.2 (C:) Cullin- 20.7 1.3E+02 0.0094 28.8 8.2 75 114-213 40-114 (1207)
4 d1qbkb_ a.118.1.1 (B:) Karyoph 12.8 1.1E+02 0.0082 28.6 5.4 84 115-220 432-516 (888)
5 d1wa5c_ a.118.1.1 (C:) Exporti 11.6 3.1E+02 0.023 25.0 8.1 15 153-167 511-525 (959)
6 d1m6ya1 a.60.13.1 (A:115-215) 11.4 71 0.0052 24.1 2.9 15 153-167 85-99 (101)
7 d1ot8a_ d.211.1.1 (A:) Neuroge 9.2 30 0.0022 26.1 -0.2 33 123-155 3-36 (209)
8 d1cyja_ a.3.1.1 (A:) Cytochrom 8.5 60 0.0044 22.4 1.3 24 78-101 67-90 (90)
9 g1o7d.1 a.8.3.1 (B:385-422,C:4 7.7 2E+02 0.015 20.5 4.1 42 117-158 21-66 (95)
10 d2hwna1 a.31.1.1 (A:5-43) cAMP 7.5 2.3E+02 0.017 18.2 3.8 34 175-208 3-37 (39)
No 1
>d1w27a_ a.127.1.2 (A:) Phenylalanine ammonia-lyase, PAL {Parsley (Petroselinum crispum), PAL1 [TaxId: 4043]}
Probab=26.67 E-value=71 Score=31.97 Aligned_cols=105 Identities=13% Similarity=0.168 Sum_probs=57.1
Q ss_pred cCCCCCCcchHHHHHHHHHHHHhcCCCCCCCCCCCCccccCCCChHHHH-HHHHHHHHHhhhcCC---------------
Q psy7415 70 LNPDVKNLDIQHVITSLVEFLSSKHNQVLWPYEDITAKVWTIRSGEQLD-IFLRHVLRLFRESLP--------------- 133 (396)
Q Consensus 70 ~~~d~s~~~~~e~ik~LIe~L~sr~~~~LW~yED~s~k~~~irSp~qM~-~Lvr~VV~vFs~s~P--------------- 133 (396)
+..|++..+.+...+++++.+... -.++..||...... .-...+. .++.+.+.......+
T Consensus 526 ~~~Dr~l~~d~~~~~dl~~~~~~~--~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 601 (692)
T d1w27a_ 526 MGVNGELHPSRFCEKDLLRVVDRE--YIFAYIDDPCSATY--PLMQKLRQTLVEHALKNGDNERNLSTSIFQKIATFEDE 601 (692)
T ss_dssp BTTTBCCSSCHHHHHHHHHHHHHS--CGGGTTTSTTCTTS--HHHHHHHHHHHHHHHTSGGGGGSGGGCSGGGHHHHHHH
T ss_pred ccCCCCCCcchhhhHHHHHHHHhh--hhhhhccCcccccc--hHHHHHHHHHHHHHhhccccccCCCccHHHHHHHHHHH
Confidence 446778888877777777777643 34454454443211 0011221 133333222111100
Q ss_pred -hhHHHHHHHHHHHhh---hhcccchhhhhhHHHHHHhccCCCChhHHH
Q psy7415 134 -HALISERWAQTALQL---GLSCGSRHYAGRSLQIFRALRVPINSRMLT 178 (396)
Q Consensus 134 -~~~Lre~Wg~vAL~W---ATSCssRHiAcRSFQIFRaL~ppLd~~mLs 178 (396)
...|...|....-.+ -..++.|..-|||+.+||..+..|.-.++.
T Consensus 602 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ly~fvR~~l~~~~~~ 650 (692)
T d1w27a_ 602 LKALLPKEVESARAALESGNPAIPNRIEECRSYPLYKFVRKELGTEYLT 650 (692)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSSCCGGGGSTTHHHHHHHHTTSCCCCCC
T ss_pred HHHHHHHHHHHHHHHHhcCCccchhhhcCCcchHHHHHHHHHcCCCccC
Confidence 012334444333333 255788999999999999999888877754
No 2
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.34 E-value=16 Score=32.48 Aligned_cols=48 Identities=23% Similarity=0.335 Sum_probs=31.2
Q ss_pred chhhhhhHHHHHHhccCCCChhH----HHHHHHHHHHhhccCCcchHHHHHHHHHHHH
Q psy7415 154 SRHYAGRSLQIFRALRVPINSRM----LTDILSRLVETVAETGEDMQGYVTELLLTLE 207 (396)
Q Consensus 154 sRHiAcRSFQIFRaL~ppLd~~m----LsDMLaRLsnTIaD~~~DiQgFvmEILlTL~ 207 (396)
||..|++.+.-+ ...++... +..+|.+| ..|++.|++-|+-|.|.+|.
T Consensus 535 VR~~a~~~l~~i---~~~~~~~~~~~~i~~~l~~L---~~D~d~dVr~~A~~al~~l~ 586 (588)
T d1b3ua_ 535 VRFNVAKSLQKI---GPILDNSTLQSEVKPILEKL---TQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHHHHHHHHHHH---GGGSCHHHHHHHHHHHHHHH---TTCSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH---HHHcCcHhHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHHh
Confidence 677777776432 23333333 33444444 56899999999999998874
No 3
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.74 E-value=1.3e+02 Score=28.76 Aligned_cols=75 Identities=12% Similarity=0.225 Sum_probs=51.3
Q ss_pred hHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHhhhhcccchhhhhhHHHHHHhccCCCChhHHHHHHHHHHHhhccCCc
Q psy7415 114 GEQLDIFLRHVLRLFRESLPHALISERWAQTALQLGLSCGSRHYAGRSLQIFRALRVPINSRMLTDILSRLVETVAETGE 193 (396)
Q Consensus 114 p~qM~~Lvr~VV~vFs~s~P~~~Lre~Wg~vAL~WATSCssRHiAcRSFQIFRaL~ppLd~~mLsDMLaRLsnTIaD~~~ 193 (396)
......++..+++.+.+..|. ||..|++++..| ...+....+..++..|...+.+.++
T Consensus 40 ~~~~~~i~~~ll~~L~D~~~~-------------------Vq~~A~k~l~~l---~~~~~~~~~~~l~~~L~~~l~~~~~ 97 (1207)
T d1u6gc_ 40 DDSERKVVKMILKLLEDKNGE-------------------VQNLAVKCLGPL---VSKVKEYQVETIVDTLCTNMLSDKE 97 (1207)
T ss_dssp TTHHHHHHHHHHHHTTCSSHH-------------------HHHHHHHHHHHH---HTTSCHHHHHHHHHHHHHHTTCSSS
T ss_pred hHHHHHHHHHHHHHhCCCCHH-------------------HHHHHHHHHHHH---HHhCcHhhHHHHHHHHHHHhcCCch
Confidence 345567888899999877543 456677776654 3456788899999999988888777
Q ss_pred chHHHHHHHHHHHHHHHHhh
Q psy7415 194 DMQGYVTELLLTLESAVDAL 213 (396)
Q Consensus 194 DiQgFvmEILlTL~aiV~~L 213 (396)
+.+..+.- +|..++..+
T Consensus 98 ~~r~~~~~---~L~~i~~~l 114 (1207)
T d1u6gc_ 98 QLRDISSI---GLKTVIGEL 114 (1207)
T ss_dssp HHHHHHHH---HHHHHHHHC
T ss_pred hhhHHHHH---HHHHHHHhc
Confidence 76665543 334444444
No 4
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.80 E-value=1.1e+02 Score=28.65 Aligned_cols=84 Identities=12% Similarity=0.202 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHhhhhcccchhhhhhHH-HHHHhccCCCChhHHHHHHHHHHHhhccCCc
Q psy7415 115 EQLDIFLRHVLRLFRESLPHALISERWAQTALQLGLSCGSRHYAGRSL-QIFRALRVPINSRMLTDILSRLVETVAETGE 193 (396)
Q Consensus 115 ~qM~~Lvr~VV~vFs~s~P~~~Lre~Wg~vAL~WATSCssRHiAcRSF-QIFRaL~ppLd~~mLsDMLaRLsnTIaD~~~ 193 (396)
+.+..++..++..+.+..|. +|..||..+ |+...+.+......+..++.-|-+.+.|+++
T Consensus 432 ~~l~~li~~l~~~l~d~~~~-------------------Vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~l~d~~~ 492 (888)
T d1qbkb_ 432 PYLPELIPHLIQCLSDKKAL-------------------VRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNK 492 (888)
T ss_dssp TTHHHHHHHHHHHTTSSCHH-------------------HHHHHHHHHHHTHHHHHSSCHHHHTTTHHHHHHHHHSSSCH
T ss_pred ccchhhhHHHHHhccCCCHH-------------------HHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhcCCCH
Q ss_pred chHHHHHHHHHHHHHHHHhhhcCCCch
Q psy7415 194 DMQGYVTELLLTLESAVDALESDFRPL 220 (396)
Q Consensus 194 DiQgFvmEILlTL~aiV~~L~~~~k~~ 220 (396)
.+|..+...|.+| ++...+.+.++
T Consensus 493 ~V~~~a~~al~~l---~~~~~~~l~p~ 516 (888)
T d1qbkb_ 493 RVQEAACSAFATL---EEEACTELVPY 516 (888)
T ss_dssp HHHHHHHHHHHHH---HHHHTTSSGGG
T ss_pred HHHHHHHHHHHHH---HHHhhhhhhhH
No 5
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=11.63 E-value=3.1e+02 Score=25.00 Aligned_cols=15 Identities=13% Similarity=0.118 Sum_probs=9.5
Q ss_pred cchhhhhhHHHHHHh
Q psy7415 153 GSRHYAGRSLQIFRA 167 (396)
Q Consensus 153 ssRHiAcRSFQIFRa 167 (396)
++|-.||++++-|-.
T Consensus 511 ~V~~~a~~al~~~~~ 525 (959)
T d1wa5c_ 511 VVYTYAAITIEKILT 525 (959)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHH
Confidence 456777777765543
No 6
>d1m6ya1 a.60.13.1 (A:115-215) Putative methyltransferase TM0872, insert domain {Thermotoga maritima [TaxId: 2336]}
Probab=11.41 E-value=71 Score=24.07 Aligned_cols=15 Identities=33% Similarity=0.649 Sum_probs=12.1
Q ss_pred cchhhhhhHHHHHHh
Q psy7415 153 GSRHYAGRSLQIFRA 167 (396)
Q Consensus 153 ssRHiAcRSFQIFRa 167 (396)
...|.|-|.||-+|-
T Consensus 85 ~~~h~atr~FQALRI 99 (101)
T d1m6ya1 85 RKRHFATKTFQAIRI 99 (101)
T ss_dssp CSSCTTHHHHHHHHH
T ss_pred CCCChhhHHhhhhee
Confidence 466889999998884
No 7
>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=9.15 E-value=30 Score=26.12 Aligned_cols=33 Identities=12% Similarity=0.083 Sum_probs=20.2
Q ss_pred HHHHHhhhcCChhHH-HHHHHHHHHhhhhcccch
Q psy7415 123 HVLRLFRESLPHALI-SERWAQTALQLGLSCGSR 155 (396)
Q Consensus 123 ~VV~vFs~s~P~~~L-re~Wg~vAL~WATSCssR 155 (396)
+||++|-...++-.. .+++|..||.||......
T Consensus 3 ~~v~~Ll~~g~din~~~d~~G~t~L~~A~~~g~~ 36 (209)
T d1ot8a_ 3 QVISDLLAQGAELNATMDKTGETSLHLAARFARA 36 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTTCH
T ss_pred HHHHHHHHCCCCcCcCcCCCCCCHHHHHHHcCCH
Confidence 445555444322112 468999999999877543
No 8
>d1cyja_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=8.49 E-value=60 Score=22.40 Aligned_cols=24 Identities=17% Similarity=0.440 Sum_probs=18.8
Q ss_pred chHHHHHHHHHHHHhcCCCCCCCC
Q psy7415 78 DIQHVITSLVEFLSSKHNQVLWPY 101 (396)
Q Consensus 78 ~~~e~ik~LIe~L~sr~~~~LW~y 101 (396)
-+++.|++++.+|.+.....=|.|
T Consensus 67 Lsd~ei~~v~aYi~~~a~~~~w~~ 90 (90)
T d1cyja_ 67 LSEEEIQAVAEYVFKQATDAAWKY 90 (90)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCCCC
T ss_pred CCHHHHHHHHHHHHHHccCCCCCC
Confidence 357899999999988765556876
No 9
>g1o7d.1 a.8.3.1 (B:385-422,C:431-487) Lysosomal alpha-mannosidase {Cow (Bos taurus) [TaxId: 9913]}
Probab=7.71 E-value=2e+02 Score=20.52 Aligned_cols=42 Identities=17% Similarity=-0.024 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHhhhcCChhHHHHHHHHHHHhhh----hcccchhhh
Q psy7415 117 LDIFLRHVLRLFRESLPHALISERWAQTALQLG----LSCGSRHYA 158 (396)
Q Consensus 117 M~~Lvr~VV~vFs~s~P~~~Lre~Wg~vAL~WA----TSCssRHiA 158 (396)
++.+++.+=.++.-.+|...+...|-.+++.-. ++|++++..
T Consensus 21 ~e~~L~~~E~l~s~~~~~~~~~~lwk~ll~~Q~HD~i~GTs~~~V~ 66 (95)
T g1o7d.1 21 SYNFLQVCNQLEALAGPAGDSAPLNEAMAVLQHHDAVSGTSRQHVA 66 (95)
T ss_dssp HHHHHHHHHHHHHHSCC-CCSHHHHHHHHHTTBTTTTTCCSCHHHH
T ss_pred HHHHHHHHHHHHhhccccccHHHHHHHHHhcccccccCCcCchHHH
Confidence 344444433333334676678888888877754 555555444
No 10
>d2hwna1 a.31.1.1 (A:5-43) cAMP-dependent protein kinase type II regulatory subunit {Mouse (Mus musculus) [TaxId: 10090]}
Probab=7.54 E-value=2.3e+02 Score=18.25 Aligned_cols=34 Identities=21% Similarity=0.346 Sum_probs=27.8
Q ss_pred hHHHHHHHHHH-HhhccCCcchHHHHHHHHHHHHH
Q psy7415 175 RMLTDILSRLV-ETVAETGEDMQGYVTELLLTLES 208 (396)
Q Consensus 175 ~mLsDMLaRLs-nTIaD~~~DiQgFvmEILlTL~a 208 (396)
.-|.++|.-++ +++.++-+|+-.|+.+-+..|..
T Consensus 3 ~gL~~lL~~ftrevLR~qP~di~~faa~YF~~L~~ 37 (39)
T d2hwna1 3 PGLTELLQGYTVEVLRQQPPDLVDFAVEYFTRLRE 37 (39)
T ss_dssp TTHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHh
Confidence 45778888887 78888889999999998887753
Done!