RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7415
         (396 letters)



>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 393

 Score = 28.3 bits (61), Expect = 1.9
 Identities = 4/33 (12%), Positives = 12/33 (36%)

Query: 91  SSKHNQVLWPYEDITAKVWTIRSGEQLDIFLRH 123
           +     +     D   + W +++ E++     H
Sbjct: 298 NDSGETLCSAGWDGKLRFWDVKTKERITTLNMH 330


>d1zeea1 a.266.1.2 (A:6-392) Hypothetical protein SO4414 {Shewanella
           oneidensis [TaxId: 70863]}
          Length = 387

 Score = 26.7 bits (59), Expect = 5.1
 Identities = 18/78 (23%), Positives = 28/78 (35%), Gaps = 9/78 (11%)

Query: 201 ELLLTLESAVDALESDFRPLDHMKELFKSTPNLNNKEAGG---AGASGKRSPGLNVPGGM 257
                L+  +++ +  F  LD  +  +   P       G     GA+     G+NV    
Sbjct: 184 VTKQALQDVIESNQQLFNRLDTDRFFYCVRPYYKPYRVGSVVYRGANAGDFAGINVIDLT 243

Query: 258 MGLCSHMSGVHARSTSYS 275
           +GLC       A   SYS
Sbjct: 244 LGLC------FANEASYS 255


>d1i5na_ a.24.10.3 (A:) Chemotaxis protein CheA P1 domain
           {Salmonella typhimurium [TaxId: 90371]}
          Length = 128

 Score = 25.6 bits (56), Expect = 5.7
 Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 4/45 (8%)

Query: 201 ELLLTLESAVDALESDFRPLDHMKELFKSTPNLNNKEAGGAGASG 245
           ELL  +E  +  L  +    + +  +F++  ++     GGAG  G
Sbjct: 15  ELLADMEQHLLDLVPESPDAEQLNAIFRAAHSI----KGGAGTFG 55


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.132    0.395 

Gapped
Lambda     K      H
   0.267   0.0616    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,434,646
Number of extensions: 65714
Number of successful extensions: 197
Number of sequences better than 10.0: 1
Number of HSP's gapped: 197
Number of HSP's successfully gapped: 3
Length of query: 396
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 309
Effective length of database: 1,213,086
Effective search space: 374843574
Effective search space used: 374843574
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.8 bits)