Query psy7416
Match_columns 381
No_of_seqs 289 out of 380
Neff 4.8
Searched_HMMs 46136
Date Fri Aug 16 17:43:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7416.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7416hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2636|consensus 100.0 4.2E-95 9E-100 725.9 16.2 261 85-352 219-497 (497)
2 PF11931 DUF3449: Domain of un 100.0 1.5E-87 3.2E-92 619.5 4.3 178 174-351 1-196 (196)
3 COG5188 PRP9 Splicing factor 3 100.0 7.4E-67 1.6E-71 511.1 10.1 220 131-351 231-469 (470)
4 KOG2636|consensus 99.7 2.8E-17 6.2E-22 166.5 7.2 109 1-110 272-388 (497)
5 PF13297 Telomere_Sde2_2: Telo 99.2 4.2E-12 9E-17 97.6 2.5 46 110-155 1-60 (60)
6 PF11931 DUF3449: Domain of un 98.8 4.1E-09 8.8E-14 98.5 4.2 40 44-83 1-40 (196)
7 COG5188 PRP9 Splicing factor 3 98.0 2.5E-06 5.5E-11 85.8 2.4 71 4-84 242-314 (470)
8 KOG2827|consensus 97.6 2.1E-05 4.5E-10 77.2 2.0 47 109-155 261-321 (322)
9 PF13297 Telomere_Sde2_2: Telo 97.1 0.00033 7.1E-09 54.4 2.1 25 1-25 34-60 (60)
10 PF12874 zf-met: Zinc-finger o 94.9 0.0095 2.1E-07 37.3 0.5 25 257-282 1-25 (25)
11 PF12171 zf-C2H2_jaz: Zinc-fin 91.8 0.087 1.9E-06 33.9 1.1 26 257-283 2-27 (27)
12 smart00451 ZnF_U1 U1-like zinc 86.3 0.4 8.6E-06 31.9 1.3 31 256-287 3-33 (35)
13 PLN02748 tRNA dimethylallyltra 84.7 0.42 9E-06 50.7 1.1 36 253-288 415-450 (468)
14 smart00355 ZnF_C2H2 zinc finge 83.6 0.46 1E-05 28.5 0.6 21 257-278 1-21 (26)
15 COG4481 Uncharacterized protei 83.0 0.56 1.2E-05 36.2 1.0 33 245-277 23-55 (60)
16 PF06397 Desulfoferrod_N: Desu 82.7 0.32 7E-06 34.3 -0.4 13 254-266 4-16 (36)
17 PF09943 DUF2175: Uncharacteri 80.7 0.69 1.5E-05 39.6 0.8 17 255-271 1-17 (101)
18 PF13894 zf-C2H2_4: C2H2-type 77.6 1 2.2E-05 26.8 0.7 21 257-278 1-21 (24)
19 TIGR00319 desulf_FeS4 desulfof 73.3 1.1 2.4E-05 30.4 0.0 14 254-267 5-18 (34)
20 PF00096 zf-C2H2: Zinc finger, 72.8 1.2 2.6E-05 27.0 0.1 21 257-278 1-21 (23)
21 cd00974 DSRD Desulforedoxin (D 70.9 1.4 3E-05 30.0 0.0 13 255-267 3-15 (34)
22 PF13909 zf-H2C2_5: C2H2-type 62.0 3.6 7.9E-05 25.3 0.7 20 257-278 1-20 (24)
23 cd00729 rubredoxin_SM Rubredox 60.9 3.2 7E-05 28.6 0.3 16 256-272 2-17 (34)
24 PF12756 zf-C2H2_2: C2H2 type 60.7 3.6 7.9E-05 32.5 0.7 28 256-284 50-77 (100)
25 PF13913 zf-C2HC_2: zinc-finge 51.3 7 0.00015 25.1 0.7 20 257-278 3-22 (25)
26 PF13465 zf-H2C2_2: Zinc-finge 50.4 8.2 0.00018 24.7 0.9 17 249-265 7-23 (26)
27 PF13912 zf-C2H2_6: C2H2-type 50.0 6.4 0.00014 24.7 0.3 21 256-277 1-21 (27)
28 PRK12496 hypothetical protein; 43.4 5.6 0.00012 36.4 -1.0 26 245-270 125-157 (164)
29 PF13824 zf-Mss51: Zinc-finger 42.3 13 0.00028 28.7 1.0 28 252-279 10-37 (55)
30 KOG2608|consensus 41.3 3.6 7.9E-05 43.4 -2.8 47 269-316 315-370 (469)
31 KOG0030|consensus 40.7 28 0.00062 31.9 3.1 91 284-378 35-148 (152)
32 cd00350 rubredoxin_like Rubred 38.8 12 0.00027 25.3 0.4 14 257-271 2-15 (33)
33 PF06107 DUF951: Bacterial pro 34.7 18 0.00039 28.1 0.8 33 246-278 21-53 (57)
34 smart00504 Ubox Modified RING 32.3 21 0.00045 26.3 0.8 22 257-279 2-34 (63)
35 COG4847 Uncharacterized protei 31.6 19 0.00041 30.9 0.5 17 255-271 5-21 (103)
36 PHA02768 hypothetical protein; 31.6 22 0.00047 27.4 0.8 34 256-292 5-38 (55)
37 PF06147 DUF968: Protein of un 30.1 30 0.00065 32.7 1.6 41 242-297 117-159 (200)
38 cd00730 rubredoxin Rubredoxin; 29.5 19 0.0004 27.1 0.1 31 256-300 1-31 (50)
39 KOG0324|consensus 29.0 19 0.00042 34.7 0.1 20 240-259 126-145 (214)
40 TIGR00320 dfx_rbo desulfoferro 28.6 19 0.00042 31.7 0.0 14 254-267 5-18 (125)
41 KOG1074|consensus 27.8 24 0.00051 40.3 0.6 40 247-287 624-663 (958)
42 PF04194 PDCD2_C: Programmed c 27.4 13 0.00027 33.9 -1.4 31 237-274 78-110 (164)
43 PF04502 DUF572: Family of unk 27.1 22 0.00047 35.9 0.1 34 257-290 41-82 (324)
44 COG0151 PurD Phosphoribosylami 26.7 43 0.00093 35.5 2.2 35 269-312 102-136 (428)
45 PF00301 Rubredoxin: Rubredoxi 26.7 34 0.00073 25.4 1.0 31 256-300 1-31 (47)
46 PF07754 DUF1610: Domain of un 26.3 30 0.00066 22.4 0.6 13 252-264 12-24 (24)
47 PF15056 NRN1: Neuritin protei 25.6 62 0.0013 27.3 2.5 20 304-323 55-74 (89)
48 PF09082 DUF1922: Domain of un 24.6 33 0.00073 27.6 0.7 54 256-317 3-57 (68)
49 COG1439 Predicted nucleic acid 24.6 15 0.00033 34.5 -1.4 34 233-266 125-163 (177)
50 KOG2476|consensus 24.5 21 0.00045 38.3 -0.6 50 232-281 55-110 (528)
51 TIGR00009 L28 ribosomal protei 23.1 36 0.00078 26.0 0.6 16 257-272 3-18 (56)
52 KOG0804|consensus 23.1 32 0.0007 36.7 0.5 31 257-288 241-274 (493)
53 PF07897 DUF1675: Protein of u 22.9 27 0.00057 35.1 -0.2 51 236-288 231-282 (284)
54 PF05605 zf-Di19: Drought indu 22.8 37 0.00081 25.1 0.7 29 256-287 2-30 (54)
55 KOG2989|consensus 22.7 39 0.00086 33.3 1.0 38 234-271 11-55 (253)
56 TIGR00270 conserved hypothetic 22.6 33 0.00071 31.2 0.4 11 259-270 3-13 (154)
57 PF01348 Intron_maturas2: Type 22.2 32 0.00068 30.7 0.2 24 239-264 122-145 (146)
58 PRK13701 psiB plasmid SOS inhi 22.2 34 0.00074 31.1 0.4 24 231-267 39-62 (144)
59 PF07864 DUF1651: Protein of u 22.1 65 0.0014 25.5 2.0 28 289-316 38-65 (75)
60 PRK08359 transcription factor; 22.1 39 0.00084 31.7 0.7 13 257-270 7-19 (176)
61 COG5189 SFP1 Putative transcri 22.0 34 0.00074 35.2 0.4 12 254-265 396-407 (423)
62 PF10102 DUF2341: Domain of un 21.1 20 0.00044 29.7 -1.2 14 237-250 10-23 (89)
63 PF04046 PSP: PSP; InterPro: 20.1 72 0.0016 24.0 1.7 20 236-255 13-32 (48)
No 1
>KOG2636|consensus
Probab=100.00 E-value=4.2e-95 Score=725.89 Aligned_cols=261 Identities=60% Similarity=0.977 Sum_probs=239.4
Q ss_pred cccCCCCCCcch-hhcccccccccccCCccccccHHHHHhccCCccc------------cHHHHHHhhhhccCCC--CCC
Q psy7416 85 SEAGDTSDEDDE-KEAGSVLTHVGAHLDLSAFSSWEELASLGLDRLK------------TLEERAQRLFSTKGKT--ALD 149 (381)
Q Consensus 85 ~~s~~~~~edwe-~e~~~~~~~~~~~~dl~~~~s~~el~~lgL~~lk------------tl~eRA~RLf~~kg~~--~ld 149 (381)
.|..+ ..|+|+ +++.++.+ +||+.++|+++|+++||.+++ |+++||+|||+|++.+ .|+
T Consensus 219 ~~~aG-~lpg~~~~et~~~~~-----~dl~~~~s~Eel~~~g~erlk~al~alglk~gGt~~~ra~rlf~Tk~~~l~~L~ 292 (497)
T KOG2636|consen 219 AWAAG-TLPGWKYKETFSAKA-----LDLSGASSVEELYCLGCERLKSALTALGLKCGGTLHERAQRLFSTKSKSLSHLD 292 (497)
T ss_pred HHHhC-CCCCccccccccccc-----cccchhhHHHHHHhhchhHHHHHHHHHHHhcCCeecHHHHhhhhhcCcchhhhh
Confidence 67777 889999 55555444 999999999999988877777 9999999999999999 999
Q ss_pred hhhhcCCCCCcccchhHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhcccccccCCC--C-CCCCCC
Q psy7416 150 PSLLAKSKPDKGLKSKQQERQKEIAGLEAQIYKLAEQVSEQRSATKDNVQRKQARGEGERGDSEESEAGD--T-SDEDDE 226 (381)
Q Consensus 150 ~slFAK~~~gKs~~~~~~~~~k~~a~~E~~i~~~~~~L~~~~~~T~~~verk~~~t~~E~~~e~~~~~~~--~-~~~~~~ 226 (381)
+++|+++.+.+ ++.....+.++||+.|++|.+++.+|+++|.+|++||.|||++|+.|++.|.++++++ + ++|+++
T Consensus 293 ~~~~~kn~s~~-~~~~~~~~~keia~tEa~v~k~~~iL~eeR~~t~env~rKq~~ta~e~E~E~~eq~~~~~e~~~de~~ 371 (497)
T KOG2636|consen 293 TKLFAKNPSKK-GHRREKERNKEIARTEALVKKLLAILAEERKATRENVVRKQARTAEEREEEEEEQSDSDEESDDDEEE 371 (497)
T ss_pred hhhhccCcccc-hhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhhccccccccchhh
Confidence 99999998887 6788888999999999999999999999999999999999999999998877665542 2 333677
Q ss_pred CCCCCCCCCCCCCCCCchhHHHHhhCCCceecceeccCCcccChhhhhhhcchhhhhhcccccCCCCCccccccccHHHH
Q psy7416 227 VPYNPKNLPLGWDGKPIPYWLYKLHGLNISYTCEICGNFVYKGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDA 306 (381)
Q Consensus 227 ~~ynp~~lPlg~DGkPIPyWLYKLhGL~~ey~CEICGn~~Y~GrkaFe~HF~E~rH~~GmrcLGI~nt~~F~~IT~I~dA 306 (381)
.||||+||||||||||||||||||||||++|+||||||++|||||||+|||+||||+|||||||||||+||++||+|+||
T Consensus 372 ~~ynp~~lPLGwDGkPiPyWLyKLHGL~~ey~CEICGNy~Y~GrkaF~RHF~EwRH~hGmrCLGIpnt~~F~~IT~I~eA 451 (497)
T KOG2636|consen 372 LIYNPKNLPLGWDGKPIPYWLYKLHGLDIEYNCEICGNYVYKGRKAFDRHFNEWRHAHGMRCLGIPNTSVFKGITKIEEA 451 (497)
T ss_pred ccCCcccCCCCCCCCcCchHHHhhcCCCcccceeeccCccccCcHHHHHHhHHHHHhhcceecCCCCcHHhcccccHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhccCCCCCceeecCCCCcccHHHHHHHHhcCCC
Q psy7416 307 LALWEKLKAQKQEERWQPEQEEEFEDSLGNVVNRKTYEDLKRQGWQ 352 (381)
Q Consensus 307 ~~Lw~klk~~~~~~~~~~~~~~E~ED~~GNV~~qkLyedLkrQgli 352 (381)
+.||++||.++....|.|+.++||||++|||||+++|++||||||+
T Consensus 452 ~~LW~k~k~q~~~~kw~~~~eeE~ED~eGNV~~kKtYeDLKrQGLl 497 (497)
T KOG2636|consen 452 LELWKKMKEQSQSEKWPPDLEEEYEDEEGNVMNKKTYEDLKRQGLL 497 (497)
T ss_pred HHHHHHHHHhhhhccCCchhHhhhhccccCcccHHhHHHHHHccCC
Confidence 9999999999999999999999999999999888888888888875
No 2
>PF11931 DUF3449: Domain of unknown function (DUF3449); InterPro: IPR024598 This presumed domain is functionally uncharacterised. It has two conserved sequence motifs: PIP and CEICG and contains a zinc-finger of the C2H2-type.; PDB: 4DGW_A.
Probab=100.00 E-value=1.5e-87 Score=619.48 Aligned_cols=178 Identities=65% Similarity=1.129 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhcccccc--------------c----CCCCCCCCCCCCCCCCCCC
Q psy7416 174 AGLEAQIYKLAEQVSEQRSATKDNVQRKQARGEGERGDSEES--------------E----AGDTSDEDDEVPYNPKNLP 235 (381)
Q Consensus 174 a~~E~~i~~~~~~L~~~~~~T~~~verk~~~t~~E~~~e~~~--------------~----~~~~~~~~~~~~ynp~~lP 235 (381)
|+.|++|++|+++|+++|++|++||+||||+|++||++|... . .+++++++++.+|||+|||
T Consensus 1 ~~~E~~i~~~~~~L~~~~~~T~~~verk~a~T~~E~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~np~~lP 80 (196)
T PF11931_consen 1 ARREYKIHKLCELLSEEREDTKENVERKQARTEEERQAEEEYEEEIYSEDEYEEEEEEEESEEDSDDDEEEKIYNPLNLP 80 (196)
T ss_dssp -HHHHHHHHHHHHTHHHHHHHHHHHHHHHT--HHHHHHHHHHTS-SS-TT--SS--B-----------------------
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhhhhhccccccccccccccccccccccccccCCcccCC
Confidence 578999999999999999999999999999999999994210 0 0112233677899999999
Q ss_pred CCCCCCCchhHHHHhhCCCceecceeccCCcccChhhhhhhcchhhhhhcccccCCCCCccccccccHHHHHHHHHHHHH
Q psy7416 236 LGWDGKPIPYWLYKLHGLNISYTCEICGNFVYKGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDALALWEKLKA 315 (381)
Q Consensus 236 lg~DGkPIPyWLYKLhGL~~ey~CEICGn~~Y~GrkaFe~HF~E~rH~~GmrcLGI~nt~~F~~IT~I~dA~~Lw~klk~ 315 (381)
|||||||||||||||||||++|+||||||++|||||||+|||+||||+|||||||||||+||++||+|+||++||++|+.
T Consensus 81 LG~DGkPIPyWLYKLhGL~~ey~CEICGN~~Y~GrkaFekHF~E~rH~~GlrcLGI~nt~~F~~IT~I~dA~~Lw~kl~~ 160 (196)
T PF11931_consen 81 LGWDGKPIPYWLYKLHGLGVEYKCEICGNQSYKGRKAFEKHFQEWRHAYGLRCLGIPNTKHFKGITKIEDALELWEKLKK 160 (196)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCCcccHHHHHHhCCCCeeeeEeCCCcceecHHHHHHhcChhHHHccChhcCCCCcHHHcCcCcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccCCCCCceeecCCCCcccHHHHHHHHhcCC
Q psy7416 316 QKQEERWQPEQEEEFEDSLGNVVNRKTYEDLKRQGW 351 (381)
Q Consensus 316 ~~~~~~~~~~~~~E~ED~~GNV~~qkLyedLkrQgl 351 (381)
+....+|.+++++||||++|||||+++|.+|+||||
T Consensus 161 ~~~~~~~~~~~~eE~ED~eGNVm~~k~Y~dLkkQGL 196 (196)
T PF11931_consen 161 QKKRKRFEPDNEEEVEDSEGNVMSKKTYEDLKKQGL 196 (196)
T ss_dssp ------------------------------------
T ss_pred HhhhccCCCccceEeecCCCCCcCHHHHHHHHHccC
Confidence 999999998888999999999888888888888775
No 3
>COG5188 PRP9 Splicing factor 3a, subunit 3 [RNA processing and modification]
Probab=100.00 E-value=7.4e-67 Score=511.07 Aligned_cols=220 Identities=35% Similarity=0.590 Sum_probs=175.2
Q ss_pred cHHHHHHhhhhccCCCCC-ChhhhcCCCCCcccchhHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhh
Q psy7416 131 TLEERAQRLFSTKGKTAL-DPSLLAKSKPDKGLKSKQQERQKEIAGLEAQIYKLAEQVSEQRSATKDNVQRKQARGEGER 209 (381)
Q Consensus 131 tl~eRA~RLf~~kg~~~l-d~slFAK~~~gKs~~~~~~~~~k~~a~~E~~i~~~~~~L~~~~~~T~~~verk~~~t~~E~ 209 (381)
...+-+...+|...-... ..+||-.|+.|| .|.+...+...++..||.|++|..+|.+.+.+|++||.|++|+|+.||
T Consensus 231 ~g~~~~~~~YC~~C~r~f~~~~VFe~Hl~gK-~H~k~~~~~~~~v~~Ey~l~r~~kyl~d~~s~trs~V~r~la~ta~ER 309 (470)
T COG5188 231 EGAEWFPKVYCVKCGREFSRSKVFEYHLEGK-RHCKEGQGKEEFVYSEYVLHRYLKYLGDPVSETRSLVLRSLAITAKER 309 (470)
T ss_pred chhhhccceeeHhhhhHhhhhHHHHHHHhhh-hhhhhhhhhhHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHH
Confidence 344444444443333322 248999999999 677777778889999999999999999999999999999999999999
Q ss_pred ccccccc--------------CCC--CCC--CCCCCCCCCCCCCCCCCCCCchhHHHHhhCCCceecceeccCCcccChh
Q psy7416 210 GDSEESE--------------AGD--TSD--EDDEVPYNPKNLPLGWDGKPIPYWLYKLHGLNISYTCEICGNFVYKGPK 271 (381)
Q Consensus 210 ~~e~~~~--------------~~~--~~~--~~~~~~ynp~~lPlg~DGkPIPyWLYKLhGL~~ey~CEICGn~~Y~Grk 271 (381)
.+|++-. ++. .+. +|+..+|||++|||||||+|||||||||||||++|+||||||++|+||+
T Consensus 310 ~aei~~l~r~~~~~at~S~e~EGaeq~d~eQ~DE~~~~k~fdmPLG~DG~PmP~WL~klhgLd~ef~CEICgNyvy~GR~ 389 (470)
T COG5188 310 KAEISLLSRRKKQPATKSSEKEGAEQVDGEQRDEHVSGKSFDMPLGPDGLPMPRWLCKLHGLDIEFECEICGNYVYYGRD 389 (470)
T ss_pred HHHhHHHHHHhhccCCCchhhcccccccccccchhhccCcccCCCCCCCCCCchHHHHhcCCCcceeeeecccccccchH
Confidence 9986510 011 111 2677799999999999999999999999999999999999999999999
Q ss_pred hhhhhcchhhhhhcccccCCCCCccccccccHHHHHHHHHHHHHhhhhhccCCCCCceeecCCCCcccHHHHHHHHhcCC
Q psy7416 272 AFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDALALWEKLKAQKQEERWQPEQEEEFEDSLGNVVNRKTYEDLKRQGW 351 (381)
Q Consensus 272 aFe~HF~E~rH~~GmrcLGI~nt~~F~~IT~I~dA~~Lw~klk~~~~~~~~~~~~~~E~ED~~GNV~~qkLyedLkrQgl 351 (381)
+|+|||.|.||+|||+||||.+++.|++||+|.+|+.||++++.+..+-....+..+|+||.+||||++++|++|++|||
T Consensus 390 ~FdrHF~E~rHiygl~clGi~ps~vfkgIT~I~ea~~lw~~m~~~ss~~kv~~e~~~E~EDeEGNVmskkvY~dLK~qgL 469 (470)
T COG5188 390 RFDRHFEEDRHIYGLECLGIKPSRVFKGITRIGEAMKLWNRMEESSSSLKVPTEYSEEFEDEEGNVMSKKVYEDLKRQGL 469 (470)
T ss_pred HHHhhhhhhhhhhheeeccccchHHHhhhhhHHHHHHHHHHhhhhhhhcccchhhhhhhhccccccchHHHHHHHHHccC
Confidence 99999999999999999999999999999999999999999998763322222344555555555555554444444444
No 4
>KOG2636|consensus
Probab=99.69 E-value=2.8e-17 Score=166.46 Aligned_cols=109 Identities=45% Similarity=0.590 Sum_probs=91.0
Q ss_pred ChHHHHhhhhhcCCCC--CCChhhhhccCCCcccchhHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcccchhh
Q psy7416 1 TLEERAQRLFSTKGKT--ALDPSLLAKSKPDKGLKSKQQERQKEIAGLEAQIYKLAEQVSEQRSATKDNVQRKQARGEGE 78 (381)
Q Consensus 1 tl~eraqrlf~tk~~~--~l~~~~~ak~~~~~~~~~~~~~k~k~IA~lE~~I~~Lae~L~~~R~~TkeNVERKqarT~~E 78 (381)
|+.+||+|+|+|+|++ +|++++|+|++..+ ++.....++++||+.|++|++++.+|+++|.+|++||+||||+|+.|
T Consensus 272 t~~~ra~rlf~Tk~~~l~~L~~~~~~kn~s~~-~~~~~~~~~keia~tEa~v~k~~~iL~eeR~~t~env~rKq~~ta~e 350 (497)
T KOG2636|consen 272 TLHERAQRLFSTKSKSLSHLDTKLFAKNPSKK-GHRREKERNKEIARTEALVKKLLAILAEERKATRENVVRKQARTAEE 350 (497)
T ss_pred eecHHHHhhhhhcCcchhhhhhhhhccCcccc-hhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhh
Confidence 7899999999999999 59999999987665 66777899999999999999999999999999999999999999999
Q ss_pred hhcccccccCCCCCCcch-hhc-----ccccccccccC
Q psy7416 79 RGDSEESEAGDTSDEDDE-KEA-----GSVLTHVGAHL 110 (381)
Q Consensus 79 re~E~e~~s~~~~~edwe-~e~-----~~~~~~~~~~~ 110 (381)
|+.|.++.+.+.++++.+ ++. .-++.|+|.||
T Consensus 351 ~E~E~~eq~~~~~e~~~de~~~~ynp~~lPLGwDGkPi 388 (497)
T KOG2636|consen 351 REEEEEEQSDSDEESDDDEEELIYNPKNLPLGWDGKPI 388 (497)
T ss_pred hhhhhhhhhccccccccchhhccCCcccCCCCCCCCcC
Confidence 988888877654333322 222 44556666655
No 5
>PF13297 Telomere_Sde2_2: Telomere stability C-terminal
Probab=99.23 E-value=4.2e-12 Score=97.64 Aligned_cols=46 Identities=70% Similarity=0.941 Sum_probs=42.1
Q ss_pred CCccccccHHHHHhccCCccc------------cHHHHHHhhhhccCCC--CCChhhhcC
Q psy7416 110 LDLSAFSSWEELASLGLDRLK------------TLEERAQRLFSTKGKT--ALDPSLLAK 155 (381)
Q Consensus 110 ~dl~~~~s~~el~~lgL~~lk------------tl~eRA~RLf~~kg~~--~ld~slFAK 155 (381)
|||+.|+|+++|+.+|+++|| |++|||+|||+++|++ ++|+++|||
T Consensus 1 ldL~~f~sa~eLe~lGldrLK~~L~a~GLKcGGTl~ERA~RLfs~kg~~~~~~d~~l~AK 60 (60)
T PF13297_consen 1 LDLDAFSSAEELEALGLDRLKSALMALGLKCGGTLQERAARLFSVKGLPLEEIDKKLFAK 60 (60)
T ss_pred CcchhcCCHHHHHHhCHHHHHHHHHHcCCccCCCHHHHHHHHHHhcCCChhhCCHHHhcC
Confidence 689999999999977666666 9999999999999999 999999997
No 6
>PF11931 DUF3449: Domain of unknown function (DUF3449); InterPro: IPR024598 This presumed domain is functionally uncharacterised. It has two conserved sequence motifs: PIP and CEICG and contains a zinc-finger of the C2H2-type.; PDB: 4DGW_A.
Probab=98.79 E-value=4.1e-09 Score=98.52 Aligned_cols=40 Identities=55% Similarity=0.626 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhhcccchhhhhccc
Q psy7416 44 AGLEAQIYKLAEQVSEQRSATKDNVQRKQARGEGERGDSE 83 (381)
Q Consensus 44 A~lE~~I~~Lae~L~~~R~~TkeNVERKqarT~~Ere~E~ 83 (381)
|++|++|++|+++|+++|.+|++|||||||+|++||++|.
T Consensus 1 ~~~E~~i~~~~~~L~~~~~~T~~~verk~a~T~~E~~~e~ 40 (196)
T PF11931_consen 1 ARREYKIHKLCELLSEEREDTKENVERKQARTEEERQAEE 40 (196)
T ss_dssp -HHHHHHHHHHHHTHHHHHHHHHHHHHHHT--HHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 6899999999999999999999999999999999999953
No 7
>COG5188 PRP9 Splicing factor 3a, subunit 3 [RNA processing and modification]
Probab=98.01 E-value=2.5e-06 Score=85.75 Aligned_cols=71 Identities=20% Similarity=0.129 Sum_probs=61.0
Q ss_pred HHHhhhhhcCCCC--CCChhhhhccCCCcccchhHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcccchhhhhc
Q psy7416 4 ERAQRLFSTKGKT--ALDPSLLAKSKPDKGLKSKQQERQKEIAGLEAQIYKLAEQVSEQRSATKDNVQRKQARGEGERGD 81 (381)
Q Consensus 4 eraqrlf~tk~~~--~l~~~~~ak~~~~~~~~~~~~~k~k~IA~lE~~I~~Lae~L~~~R~~TkeNVERKqarT~~Ere~ 81 (381)
..|+|.|++-.+. |+.++.|.|+... ...+|..|+.|.+|...|.+++.+|++||.|+||+|+.||-+
T Consensus 242 ~~C~r~f~~~~VFe~Hl~gK~H~k~~~~----------~~~~v~~Ey~l~r~~kyl~d~~s~trs~V~r~la~ta~ER~a 311 (470)
T COG5188 242 VKCGREFSRSKVFEYHLEGKRHCKEGQG----------KEEFVYSEYVLHRYLKYLGDPVSETRSLVLRSLAITAKERKA 311 (470)
T ss_pred HhhhhHhhhhHHHHHHHhhhhhhhhhhh----------hhHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHH
Confidence 3588999987777 5778877775332 356999999999999999999999999999999999999999
Q ss_pred ccc
Q psy7416 82 SEE 84 (381)
Q Consensus 82 E~e 84 (381)
|.+
T Consensus 312 ei~ 314 (470)
T COG5188 312 EIS 314 (470)
T ss_pred HhH
Confidence 876
No 8
>KOG2827|consensus
Probab=97.65 E-value=2.1e-05 Score=77.21 Aligned_cols=47 Identities=47% Similarity=0.670 Sum_probs=41.9
Q ss_pred cCCccccccHHHHHhccCCccc------------cHHHHHHhhhhccCCC--CCChhhhcC
Q psy7416 109 HLDLSAFSSWEELASLGLDRLK------------TLEERAQRLFSTKGKT--ALDPSLLAK 155 (381)
Q Consensus 109 ~~dl~~~~s~~el~~lgL~~lk------------tl~eRA~RLf~~kg~~--~ld~slFAK 155 (381)
||+|+.|.|++.++-||+.+|| ||.+||.|||+.++.| ++|++++++
T Consensus 261 p~~~ddf~s~~d~e~lg~e~lk~~l~~rglkcgg~l~eraarl~~~k~~~~~~~pk~~l~~ 321 (322)
T KOG2827|consen 261 PLNFDDFNSPADMEVLGMERLKTELQSRGLKCGGTLRERAARLFLLKSTPLDKLPKKLLAK 321 (322)
T ss_pred CccccccCCHHHHHHhhHHHHHHHHHhcCCcccccHHHHHhhhhhhcCCChhhhhHhhccC
Confidence 8999999999999966665555 9999999999999999 999999886
No 9
>PF13297 Telomere_Sde2_2: Telomere stability C-terminal
Probab=97.06 E-value=0.00033 Score=54.38 Aligned_cols=25 Identities=60% Similarity=0.840 Sum_probs=23.6
Q ss_pred ChHHHHhhhhhcCCCC--CCChhhhhc
Q psy7416 1 TLEERAQRLFSTKGKT--ALDPSLLAK 25 (381)
Q Consensus 1 tl~eraqrlf~tk~~~--~l~~~~~ak 25 (381)
||+|||+|||+++|++ .+++++|||
T Consensus 34 Tl~ERA~RLfs~kg~~~~~~d~~l~AK 60 (60)
T PF13297_consen 34 TLQERAARLFSVKGLPLEEIDKKLFAK 60 (60)
T ss_pred CHHHHHHHHHHhcCCChhhCCHHHhcC
Confidence 8999999999999999 499999987
No 10
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=94.85 E-value=0.0095 Score=37.27 Aligned_cols=25 Identities=24% Similarity=0.763 Sum_probs=23.2
Q ss_pred ecceeccCCcccChhhhhhhcchhhh
Q psy7416 257 YTCEICGNFVYKGPKAFQRHFAEWRH 282 (381)
Q Consensus 257 y~CEICGn~~Y~GrkaFe~HF~E~rH 282 (381)
|.|.|| +.++.++.+|..|++.-+|
T Consensus 1 ~~C~~C-~~~f~s~~~~~~H~~s~~H 25 (25)
T PF12874_consen 1 FYCDIC-NKSFSSENSLRQHLRSKKH 25 (25)
T ss_dssp EEETTT-TEEESSHHHHHHHHTTHHH
T ss_pred CCCCCC-CCCcCCHHHHHHHHCcCCC
Confidence 789999 7888899999999999887
No 11
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=91.76 E-value=0.087 Score=33.89 Aligned_cols=26 Identities=15% Similarity=0.599 Sum_probs=23.7
Q ss_pred ecceeccCCcccChhhhhhhcchhhhh
Q psy7416 257 YTCEICGNFVYKGPKAFQRHFAEWRHA 283 (381)
Q Consensus 257 y~CEICGn~~Y~GrkaFe~HF~E~rH~ 283 (381)
|.|.+|+ ..|....+|+.|...-+|.
T Consensus 2 ~~C~~C~-k~f~~~~~~~~H~~sk~Hk 27 (27)
T PF12171_consen 2 FYCDACD-KYFSSENQLKQHMKSKKHK 27 (27)
T ss_dssp CBBTTTT-BBBSSHHHHHCCTTSHHHH
T ss_pred CCcccCC-CCcCCHHHHHHHHccCCCC
Confidence 8999999 8899999999999988873
No 12
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=86.29 E-value=0.4 Score=31.94 Aligned_cols=31 Identities=13% Similarity=0.522 Sum_probs=26.2
Q ss_pred eecceeccCCcccChhhhhhhcchhhhhhccc
Q psy7416 256 SYTCEICGNFVYKGPKAFQRHFAEWRHAHGMR 287 (381)
Q Consensus 256 ey~CEICGn~~Y~GrkaFe~HF~E~rH~~Gmr 287 (381)
.|.|++|+-. +.+..++..|...++|...++
T Consensus 3 ~~~C~~C~~~-~~~~~~~~~H~~gk~H~~~~~ 33 (35)
T smart00451 3 GFYCKLCNVT-FTDEISVEAHLKGKKHKKNVK 33 (35)
T ss_pred CeEccccCCc-cCCHHHHHHHHChHHHHHHHH
Confidence 4889999874 559999999999999987654
No 13
>PLN02748 tRNA dimethylallyltransferase
Probab=84.67 E-value=0.42 Score=50.65 Aligned_cols=36 Identities=31% Similarity=0.613 Sum_probs=32.4
Q ss_pred CCceecceeccCCcccChhhhhhhcchhhhhhcccc
Q psy7416 253 LNISYTCEICGNFVYKGPKAFQRHFAEWRHAHGMRC 288 (381)
Q Consensus 253 L~~ey~CEICGn~~Y~GrkaFe~HF~E~rH~~Gmrc 288 (381)
+-..|.|||||+.+..|....+.|++.-+|.+-++-
T Consensus 415 ~~~~~~Ce~C~~~~~~G~~eW~~Hlksr~Hk~~~~~ 450 (468)
T PLN02748 415 LWTQYVCEACGNKVLRGAHEWEQHKQGRGHRKRVQR 450 (468)
T ss_pred ccccccccCCCCcccCCHHHHHHHhcchHHHHHHhH
Confidence 357899999999899999999999999999988773
No 14
>smart00355 ZnF_C2H2 zinc finger.
Probab=83.64 E-value=0.46 Score=28.47 Aligned_cols=21 Identities=38% Similarity=0.882 Sum_probs=18.5
Q ss_pred ecceeccCCcccChhhhhhhcc
Q psy7416 257 YTCEICGNFVYKGPKAFQRHFA 278 (381)
Q Consensus 257 y~CEICGn~~Y~GrkaFe~HF~ 278 (381)
|.|.+|| .+|.++..|.+|..
T Consensus 1 ~~C~~C~-~~f~~~~~l~~H~~ 21 (26)
T smart00355 1 YRCPECG-KVFKSKSALKEHMR 21 (26)
T ss_pred CCCCCCc-chhCCHHHHHHHHH
Confidence 7899999 67789999999976
No 15
>COG4481 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.05 E-value=0.56 Score=36.17 Aligned_cols=33 Identities=30% Similarity=0.567 Sum_probs=28.3
Q ss_pred hHHHHhhCCCceecceeccCCcccChhhhhhhc
Q psy7416 245 YWLYKLHGLNISYTCEICGNFVYKGPKAFQRHF 277 (381)
Q Consensus 245 yWLYKLhGL~~ey~CEICGn~~Y~GrkaFe~HF 277 (381)
.|-.=.-|-++.-+|+=||-.+-.+|..|+|-.
T Consensus 23 rwkIiRvGaDIkikC~nC~h~vm~pR~~Ferkl 55 (60)
T COG4481 23 RWKIIRVGADIKIKCENCGHSVMMPRYDFERKL 55 (60)
T ss_pred eEEEEEecCcEEEEecCCCcEEEecHHHHHHHH
Confidence 455555699999999999999999999999854
No 16
>PF06397 Desulfoferrod_N: Desulfoferrodoxin, N-terminal domain; InterPro: IPR004462 This domain is found as essentially the full length of desulforedoxin, a 37-residue homodimeric non-haem iron protein. It is also found as the N-terminal domain of desulfoferrodoxin (rbo), a homodimeric non-haem iron protein with 2 Fe atoms per monomer in different oxidation states. This domain binds the ferric rather than the ferrous Fe of desulfoferrodoxin. Neelaredoxin, a monomeric blue non-haem iron protein, lacks this domain.; GO: 0005506 iron ion binding; PDB: 1DFX_A 1VZI_B 2JI2_D 1VZH_B 2JI3_C 2JI1_C 1VZG_A 1CFW_A 2LK5_B 1DHG_B ....
Probab=82.71 E-value=0.32 Score=34.29 Aligned_cols=13 Identities=54% Similarity=1.076 Sum_probs=8.0
Q ss_pred CceecceeccCCc
Q psy7416 254 NISYTCEICGNFV 266 (381)
Q Consensus 254 ~~ey~CEICGn~~ 266 (381)
..-|+|++|||.+
T Consensus 4 ~~~YkC~~CGniV 16 (36)
T PF06397_consen 4 GEFYKCEHCGNIV 16 (36)
T ss_dssp TEEEE-TTT--EE
T ss_pred ccEEEccCCCCEE
Confidence 4579999999975
No 17
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=80.70 E-value=0.69 Score=39.62 Aligned_cols=17 Identities=35% Similarity=0.911 Sum_probs=15.0
Q ss_pred ceecceeccCCcccChh
Q psy7416 255 ISYTCEICGNFVYKGPK 271 (381)
Q Consensus 255 ~ey~CEICGn~~Y~Grk 271 (381)
..++|-|||+.+|||-.
T Consensus 1 ~kWkC~iCg~~I~~gql 17 (101)
T PF09943_consen 1 KKWKCYICGKPIYEGQL 17 (101)
T ss_pred CceEEEecCCeeeecce
Confidence 36899999999999975
No 18
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=77.56 E-value=1 Score=26.76 Aligned_cols=21 Identities=24% Similarity=0.850 Sum_probs=16.1
Q ss_pred ecceeccCCcccChhhhhhhcc
Q psy7416 257 YTCEICGNFVYKGPKAFQRHFA 278 (381)
Q Consensus 257 y~CEICGn~~Y~GrkaFe~HF~ 278 (381)
|.|++|| .+|..+.++.+|..
T Consensus 1 ~~C~~C~-~~~~~~~~l~~H~~ 21 (24)
T PF13894_consen 1 FQCPICG-KSFRSKSELRQHMR 21 (24)
T ss_dssp EE-SSTS--EESSHHHHHHHHH
T ss_pred CCCcCCC-CcCCcHHHHHHHHH
Confidence 7899996 56779999999864
No 19
>TIGR00319 desulf_FeS4 desulfoferrodoxin FeS4 iron-binding domain. Neelaredoxin, a monomeric blue non-heme iron protein, lacks this domain.
Probab=73.32 E-value=1.1 Score=30.44 Aligned_cols=14 Identities=50% Similarity=1.122 Sum_probs=11.7
Q ss_pred CceecceeccCCcc
Q psy7416 254 NISYTCEICGNFVY 267 (381)
Q Consensus 254 ~~ey~CEICGn~~Y 267 (381)
..-|+|++|||.+-
T Consensus 5 ~~~ykC~~Cgniv~ 18 (34)
T TIGR00319 5 GQVYKCEVCGNIVE 18 (34)
T ss_pred CcEEEcCCCCcEEE
Confidence 45799999999874
No 20
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=72.76 E-value=1.2 Score=26.98 Aligned_cols=21 Identities=33% Similarity=0.964 Sum_probs=17.1
Q ss_pred ecceeccCCcccChhhhhhhcc
Q psy7416 257 YTCEICGNFVYKGPKAFQRHFA 278 (381)
Q Consensus 257 y~CEICGn~~Y~GrkaFe~HF~ 278 (381)
|.|++||. +|.-+..+.+|-.
T Consensus 1 y~C~~C~~-~f~~~~~l~~H~~ 21 (23)
T PF00096_consen 1 YKCPICGK-SFSSKSNLKRHMR 21 (23)
T ss_dssp EEETTTTE-EESSHHHHHHHHH
T ss_pred CCCCCCCC-ccCCHHHHHHHHh
Confidence 89999985 5668889988854
No 21
>cd00974 DSRD Desulforedoxin (DSRD) domain; a small non-heme iron domain present in the desulforedoxin (rubredoxin oxidoreductase) and desulfoferrodoxin proteins of some archeael and bacterial methanogens and sulfate/sulfur reducers. Desulforedoxin is a small, single-domain homodimeric protein; each subunit contains an iron atom bound to four cysteinyl sulfur atoms, Fe(S-Cys)4, in a distorted tetrahedral coordination. Its metal center is similar to that found in rubredoxin type proteins. Desulforedoxin is regarded as a potential redox partner for rubredoxin. Desulfoferrodoxin forms a homodimeric protein, with each protomer comprised of two domains, the N-terminal DSRD domain and C-terminal superoxide reductase-like (SORL) domain. Each domain has a distinct iron center: the DSRD iron center I, Fe(S-Cys)4; and the SORL iron center II, Fe[His4Cys(Glu)].
Probab=70.95 E-value=1.4 Score=30.05 Aligned_cols=13 Identities=62% Similarity=1.201 Sum_probs=11.1
Q ss_pred ceecceeccCCcc
Q psy7416 255 ISYTCEICGNFVY 267 (381)
Q Consensus 255 ~ey~CEICGn~~Y 267 (381)
.-|+|++|||.+-
T Consensus 3 ~~ykC~~CGniv~ 15 (34)
T cd00974 3 EVYKCEICGNIVE 15 (34)
T ss_pred cEEEcCCCCcEEE
Confidence 4699999999874
No 22
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=62.01 E-value=3.6 Score=25.33 Aligned_cols=20 Identities=25% Similarity=0.765 Sum_probs=14.9
Q ss_pred ecceeccCCcccChhhhhhhcc
Q psy7416 257 YTCEICGNFVYKGPKAFQRHFA 278 (381)
Q Consensus 257 y~CEICGn~~Y~GrkaFe~HF~ 278 (381)
|+|..|. ++-. +..+.+|..
T Consensus 1 y~C~~C~-y~t~-~~~l~~H~~ 20 (24)
T PF13909_consen 1 YKCPHCS-YSTS-KSNLKRHLK 20 (24)
T ss_dssp EE-SSSS--EES-HHHHHHHHH
T ss_pred CCCCCCC-CcCC-HHHHHHHHH
Confidence 8999999 4557 999999964
No 23
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=60.86 E-value=3.2 Score=28.56 Aligned_cols=16 Identities=31% Similarity=1.086 Sum_probs=10.4
Q ss_pred eecceeccCCcccChhh
Q psy7416 256 SYTCEICGNFVYKGPKA 272 (381)
Q Consensus 256 ey~CEICGn~~Y~Grka 272 (381)
.|.|.+|| ++|.|..+
T Consensus 2 ~~~C~~CG-~i~~g~~~ 17 (34)
T cd00729 2 VWVCPVCG-YIHEGEEA 17 (34)
T ss_pred eEECCCCC-CEeECCcC
Confidence 47788888 55666543
No 24
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=60.73 E-value=3.6 Score=32.48 Aligned_cols=28 Identities=25% Similarity=0.648 Sum_probs=24.6
Q ss_pred eecceeccCCcccChhhhhhhcchhhhhh
Q psy7416 256 SYTCEICGNFVYKGPKAFQRHFAEWRHAH 284 (381)
Q Consensus 256 ey~CEICGn~~Y~GrkaFe~HF~E~rH~~ 284 (381)
.|.|-+|+.. +..+.++..|.....|..
T Consensus 50 ~~~C~~C~~~-f~s~~~l~~Hm~~~~H~~ 77 (100)
T PF12756_consen 50 SFRCPYCNKT-FRSREALQEHMRSKHHKK 77 (100)
T ss_dssp SEEBSSSS-E-ESSHHHHHHHHHHTTTTC
T ss_pred CCCCCccCCC-CcCHHHHHHHHcCccCCC
Confidence 8999999988 999999999999877765
No 25
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=51.27 E-value=7 Score=25.05 Aligned_cols=20 Identities=30% Similarity=0.753 Sum_probs=16.6
Q ss_pred ecceeccCCcccChhhhhhhcc
Q psy7416 257 YTCEICGNFVYKGPKAFQRHFA 278 (381)
Q Consensus 257 y~CEICGn~~Y~GrkaFe~HF~ 278 (381)
.+|.+||..- +..++++|..
T Consensus 3 ~~C~~CgR~F--~~~~l~~H~~ 22 (25)
T PF13913_consen 3 VPCPICGRKF--NPDRLEKHEK 22 (25)
T ss_pred CcCCCCCCEE--CHHHHHHHHH
Confidence 4799999764 8999999964
No 26
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=50.39 E-value=8.2 Score=24.66 Aligned_cols=17 Identities=29% Similarity=0.694 Sum_probs=13.5
Q ss_pred HhhCCCceecceeccCC
Q psy7416 249 KLHGLNISYTCEICGNF 265 (381)
Q Consensus 249 KLhGL~~ey~CEICGn~ 265 (381)
+.|-=.++|+|.+||..
T Consensus 7 ~~H~~~k~~~C~~C~k~ 23 (26)
T PF13465_consen 7 RTHTGEKPYKCPYCGKS 23 (26)
T ss_dssp HHHSSSSSEEESSSSEE
T ss_pred hhcCCCCCCCCCCCcCe
Confidence 35767789999999854
No 27
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=49.97 E-value=6.4 Score=24.69 Aligned_cols=21 Identities=24% Similarity=0.765 Sum_probs=17.5
Q ss_pred eecceeccCCcccChhhhhhhc
Q psy7416 256 SYTCEICGNFVYKGPKAFQRHF 277 (381)
Q Consensus 256 ey~CEICGn~~Y~GrkaFe~HF 277 (381)
.|.|.+|+. +|....+|.+|=
T Consensus 1 ~~~C~~C~~-~F~~~~~l~~H~ 21 (27)
T PF13912_consen 1 PFECDECGK-TFSSLSALREHK 21 (27)
T ss_dssp SEEETTTTE-EESSHHHHHHHH
T ss_pred CCCCCccCC-ccCChhHHHHHh
Confidence 489999985 678899998885
No 28
>PRK12496 hypothetical protein; Provisional
Probab=43.37 E-value=5.6 Score=36.42 Aligned_cols=26 Identities=35% Similarity=0.664 Sum_probs=22.0
Q ss_pred hHHHHhhCCCceec-------ceeccCCcccCh
Q psy7416 245 YWLYKLHGLNISYT-------CEICGNFVYKGP 270 (381)
Q Consensus 245 yWLYKLhGL~~ey~-------CEICGn~~Y~Gr 270 (381)
.|-|.=.|=+..|+ |+|||+...+-+
T Consensus 125 ~w~~~C~gC~~~~~~~~~~~~C~~CG~~~~r~~ 157 (164)
T PRK12496 125 KWRKVCKGCKKKYPEDYPDDVCEICGSPVKRKM 157 (164)
T ss_pred eeeEECCCCCccccCCCCCCcCCCCCChhhhcc
Confidence 59999999999994 999999876443
No 29
>PF13824 zf-Mss51: Zinc-finger of mitochondrial splicing suppressor 51
Probab=42.35 E-value=13 Score=28.67 Aligned_cols=28 Identities=14% Similarity=0.424 Sum_probs=23.8
Q ss_pred CCCceecceeccCCcccChhhhhhhcch
Q psy7416 252 GLNISYTCEICGNFVYKGPKAFQRHFAE 279 (381)
Q Consensus 252 GL~~ey~CEICGn~~Y~GrkaFe~HF~E 279 (381)
-..+.|.|..||=.+|--+.+...-+++
T Consensus 10 ~~~v~~~Cp~cGipthcS~ehw~~D~e~ 37 (55)
T PF13824_consen 10 PAHVNFECPDCGIPTHCSEEHWEDDYEE 37 (55)
T ss_pred ccccCCcCCCCCCcCccCHHHHHHhHHH
Confidence 4579999999999999999888776654
No 30
>KOG2608|consensus
Probab=41.33 E-value=3.6 Score=43.41 Aligned_cols=47 Identities=36% Similarity=0.541 Sum_probs=35.6
Q ss_pred ChhhhhhhcchhhhhhcccccCCC----CCccccccccHHHHHH-----HHHHHHHh
Q psy7416 269 GPKAFQRHFAEWRHAHGMRCLGIP----NTAHFANVTQIEDALA-----LWEKLKAQ 316 (381)
Q Consensus 269 GrkaFe~HF~E~rH~~GmrcLGI~----nt~~F~~IT~I~dA~~-----Lw~klk~~ 316 (381)
-.++|.+||.|..-=.|- -.+.. --.||++|+.|=|.+. ||-|||-+
T Consensus 315 ~i~~~p~hFdE~~~f~gd-~~a~~lKe~fr~hFrnISrIMDCVgCdKCRLWGKlQt~ 370 (469)
T KOG2608|consen 315 QIKAFPKHFDEAELFAGD-SEAPALKEEFRKHFRNISRIMDCVGCDKCRLWGKLQTQ 370 (469)
T ss_pred HHhhCccccchHhhhccc-ccchhHHHHHHHHHHHHHHHHhhcCcchhhhhhhhhhh
Confidence 346699999996655555 22222 3479999999999986 99999987
No 31
>KOG0030|consensus
Probab=40.71 E-value=28 Score=31.85 Aligned_cols=91 Identities=23% Similarity=0.318 Sum_probs=56.2
Q ss_pred hcccccCCCCCc---------cccc-----cccHHHHHHHHHHHHHhhhhhccCC-CCCceeecCCCC--cccHHHHHHH
Q psy7416 284 HGMRCLGIPNTA---------HFAN-----VTQIEDALALWEKLKAQKQEERWQP-EQEEEFEDSLGN--VVNRKTYEDL 346 (381)
Q Consensus 284 ~GmrcLGI~nt~---------~F~~-----IT~I~dA~~Lw~klk~~~~~~~~~~-~~~~E~ED~~GN--V~~qkLyedL 346 (381)
.-||.||-.||. +++. --+-++-+-++..|.+++..-.... -..--+=|.+|| ||...|+--|
T Consensus 35 dvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~q~t~edfvegLrvFDkeg~G~i~~aeLRhvL 114 (152)
T KOG0030|consen 35 DVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKDQGTYEDFVEGLRVFDKEGNGTIMGAELRHVL 114 (152)
T ss_pred HHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhccccCcHHHHHHHHHhhcccCCcceeHHHHHHHH
Confidence 678999988772 2332 2234666777888877643321100 000123466666 9999999988
Q ss_pred HhcC-CCCCchhh-----hhcccCCccchhhHHHHhhc
Q psy7416 347 KRQG-WQPEQEEE-----FEDSLGNVVNRKTYEDLKRQ 378 (381)
Q Consensus 347 krQg-li~~~~~E-----~ED~~GNvm~~k~y~dl~~q 378 (381)
-.-| .+.+.+++ .||++||| .|+++.|+
T Consensus 115 ttlGekl~eeEVe~Llag~eD~nG~i----~YE~fVk~ 148 (152)
T KOG0030|consen 115 TTLGEKLTEEEVEELLAGQEDSNGCI----NYEAFVKH 148 (152)
T ss_pred HHHHhhccHHHHHHHHccccccCCcC----cHHHHHHH
Confidence 8888 34444444 48999999 47777665
No 32
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=38.81 E-value=12 Score=25.30 Aligned_cols=14 Identities=43% Similarity=1.516 Sum_probs=10.2
Q ss_pred ecceeccCCcccChh
Q psy7416 257 YTCEICGNFVYKGPK 271 (381)
Q Consensus 257 y~CEICGn~~Y~Grk 271 (381)
|.|-+|| ++|.|..
T Consensus 2 ~~C~~CG-y~y~~~~ 15 (33)
T cd00350 2 YVCPVCG-YIYDGEE 15 (33)
T ss_pred EECCCCC-CEECCCc
Confidence 7899998 4566654
No 33
>PF06107 DUF951: Bacterial protein of unknown function (DUF951); InterPro: IPR009296 This family consists of several short hypothetical bacterial proteins of unknown function.
Probab=34.66 E-value=18 Score=28.14 Aligned_cols=33 Identities=21% Similarity=0.475 Sum_probs=27.8
Q ss_pred HHHHhhCCCceecceeccCCcccChhhhhhhcc
Q psy7416 246 WLYKLHGLNISYTCEICGNFVYKGPKAFQRHFA 278 (381)
Q Consensus 246 WLYKLhGL~~ey~CEICGn~~Y~GrkaFe~HF~ 278 (381)
|----=|-++-.+|.=||-.+-.-|..|+|...
T Consensus 21 Wei~R~GaDikikC~gCg~~imlpR~~feK~~K 53 (57)
T PF06107_consen 21 WEIIRIGADIKIKCLGCGRQIMLPRSKFEKRLK 53 (57)
T ss_pred EEEEEccCcEEEEECCCCCEEEEeHHHHHHHHH
Confidence 444455889999999999999999999999753
No 34
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=32.26 E-value=21 Score=26.35 Aligned_cols=22 Identities=18% Similarity=0.442 Sum_probs=16.5
Q ss_pred ecceecc-----------CCcccChhhhhhhcch
Q psy7416 257 YTCEICG-----------NFVYKGPKAFQRHFAE 279 (381)
Q Consensus 257 y~CEICG-----------n~~Y~GrkaFe~HF~E 279 (381)
|.|-||+ .++| .|+++.+++.+
T Consensus 2 ~~Cpi~~~~~~~Pv~~~~G~v~-~~~~i~~~~~~ 34 (63)
T smart00504 2 FLCPISLEVMKDPVILPSGQTY-ERRAIEKWLLS 34 (63)
T ss_pred cCCcCCCCcCCCCEECCCCCEE-eHHHHHHHHHH
Confidence 5566666 5777 88888888876
No 35
>COG4847 Uncharacterized protein conserved in archaea [Function unknown]
Probab=31.62 E-value=19 Score=30.87 Aligned_cols=17 Identities=29% Similarity=0.856 Sum_probs=14.8
Q ss_pred ceecceeccCCcccChh
Q psy7416 255 ISYTCEICGNFVYKGPK 271 (381)
Q Consensus 255 ~ey~CEICGn~~Y~Grk 271 (381)
.+|+|=|||+.+--|.+
T Consensus 5 kewkC~VCg~~iieGqk 21 (103)
T COG4847 5 KEWKCYVCGGTIIEGQK 21 (103)
T ss_pred ceeeEeeeCCEeeeccE
Confidence 58999999999888865
No 36
>PHA02768 hypothetical protein; Provisional
Probab=31.58 E-value=22 Score=27.42 Aligned_cols=34 Identities=24% Similarity=0.570 Sum_probs=25.2
Q ss_pred eecceeccCCcccChhhhhhhcchhhhhhcccccCCC
Q psy7416 256 SYTCEICGNFVYKGPKAFQRHFAEWRHAHGMRCLGIP 292 (381)
Q Consensus 256 ey~CEICGn~~Y~GrkaFe~HF~E~rH~~GmrcLGI~ 292 (381)
-|.|++||..-- =+.++.+|-.- |..+.+|.+-.
T Consensus 5 ~y~C~~CGK~Fs-~~~~L~~H~r~--H~k~~kc~~C~ 38 (55)
T PHA02768 5 GYECPICGEIYI-KRKSMITHLRK--HNTNLKLSNCK 38 (55)
T ss_pred ccCcchhCCeec-cHHHHHHHHHh--cCCcccCCccc
Confidence 489999998644 67788888654 77777776654
No 37
>PF06147 DUF968: Protein of unknown function (DUF968); InterPro: IPR010373 This is a family of uncharacterised prophage proteins that are also found in bacteria and humans.
Probab=30.08 E-value=30 Score=32.73 Aligned_cols=41 Identities=32% Similarity=0.510 Sum_probs=25.3
Q ss_pred CchhHHHHhhCCCceecceeccCCcccChhhhhhhcchhhhh--hcccccCCCCCccc
Q psy7416 242 PIPYWLYKLHGLNISYTCEICGNFVYKGPKAFQRHFAEWRHA--HGMRCLGIPNTAHF 297 (381)
Q Consensus 242 PIPyWLYKLhGL~~ey~CEICGn~~Y~GrkaFe~HF~E~rH~--~GmrcLGI~nt~~F 297 (381)
-+|+|||.+ +.=+|-|||... .+.-|. +|+.--|+..+..|
T Consensus 117 ~~~~yl~~v----~~~~C~iCGk~~-----------~d~hH~iG~g~~~~~~~~~d~~ 159 (200)
T PF06147_consen 117 ESEKYLYWV----KSRPCVICGKPP-----------ADIHHIIGMGRGRMGIKHHDLF 159 (200)
T ss_pred HHHHHHhhh----ccCccccCCCCc-----------cccceeeccccCccccccCCCe
Confidence 368999984 466899999531 144454 44555666655443
No 38
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=29.47 E-value=19 Score=27.07 Aligned_cols=31 Identities=35% Similarity=0.868 Sum_probs=19.6
Q ss_pred eecceeccCCcccChhhhhhhcchhhhhhcccccCCCCCcccccc
Q psy7416 256 SYTCEICGNFVYKGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANV 300 (381)
Q Consensus 256 ey~CEICGn~~Y~GrkaFe~HF~E~rH~~GmrcLGI~nt~~F~~I 300 (381)
.|.|-+|| ++|-.. .|-.-.|||+-..|.++
T Consensus 1 ~y~C~~Cg-yiYd~~-------------~Gd~~~~i~pGt~f~~L 31 (50)
T cd00730 1 KYECRICG-YIYDPA-------------EGDPDEGIPPGTPFEDL 31 (50)
T ss_pred CcCCCCCC-eEECCC-------------CCCcccCcCCCCCHhHC
Confidence 48999999 888533 23344566655555544
No 39
>KOG0324|consensus
Probab=28.99 E-value=19 Score=34.73 Aligned_cols=20 Identities=35% Similarity=0.813 Sum_probs=16.9
Q ss_pred CCCchhHHHHhhCCCceecc
Q psy7416 240 GKPIPYWLYKLHGLNISYTC 259 (381)
Q Consensus 240 GkPIPyWLYKLhGL~~ey~C 259 (381)
|||||-|.-.|.-++..+.|
T Consensus 126 gk~IP~winrLa~~~~~~~~ 145 (214)
T KOG0324|consen 126 GKKIPSWVNRLARAGLCSLC 145 (214)
T ss_pred CCCccHHHHHHHHHhhhhHH
Confidence 99999999999988766444
No 40
>TIGR00320 dfx_rbo desulfoferrodoxin. This protein is described in some articles as rubredoxin oxidoreductase (rbo), and its gene shares an operon with the rubredoxin gene in Desulfovibrio vulgaris Hildenborough.
Probab=28.62 E-value=19 Score=31.71 Aligned_cols=14 Identities=50% Similarity=1.042 Sum_probs=11.6
Q ss_pred CceecceeccCCcc
Q psy7416 254 NISYTCEICGNFVY 267 (381)
Q Consensus 254 ~~ey~CEICGn~~Y 267 (381)
..-|+|++|||.+-
T Consensus 5 ~~fYkC~~CGniv~ 18 (125)
T TIGR00320 5 LQVYKCEVCGNIVE 18 (125)
T ss_pred CcEEECCCCCcEEE
Confidence 34799999999883
No 41
>KOG1074|consensus
Probab=27.78 E-value=24 Score=40.30 Aligned_cols=40 Identities=20% Similarity=0.488 Sum_probs=29.2
Q ss_pred HHHhhCCCceecceeccCCcccChhhhhhhcchhhhhhccc
Q psy7416 247 LYKLHGLNISYTCEICGNFVYKGPKAFQRHFAEWRHAHGMR 287 (381)
Q Consensus 247 LYKLhGL~~ey~CEICGn~~Y~GrkaFe~HF~E~rH~~Gmr 287 (381)
-|+-|+=-.+|+|-|||.. |-.+-+.--||.--|--+-||
T Consensus 624 HyrtHtGERPFkCKiCgRA-FtTkGNLkaH~~vHka~p~~R 663 (958)
T KOG1074|consen 624 HYRTHTGERPFKCKICGRA-FTTKGNLKAHMSVHKAKPPAR 663 (958)
T ss_pred hhhcccCcCccccccccch-hccccchhhcccccccCcccc
Confidence 5999999999999999953 334445566777666555555
No 42
>PF04194 PDCD2_C: Programmed cell death protein 2, C-terminal putative domain ; InterPro: IPR007320 PDCD2 is localized predominantly in the cytosol of cells situated at the opposite pole of the germinal centre from the centroblasts as well as in cells in the mantle zone. It has been shown to interact with BCL6, an evolutionarily conserved Kruppel-type zinc finger protein that functions as a strong transcriptional repressor and is required for germinal centre development. The rat homologue, Rp8, is associated with programmed cell death in thymocytes.; GO: 0005737 cytoplasm
Probab=27.43 E-value=13 Score=33.93 Aligned_cols=31 Identities=32% Similarity=0.679 Sum_probs=19.9
Q ss_pred CCCCCCchhHHHHhhCCC--ceecceeccCCcccChhhhh
Q psy7416 237 GWDGKPIPYWLYKLHGLN--ISYTCEICGNFVYKGPKAFQ 274 (381)
Q Consensus 237 g~DGkPIPyWLYKLhGL~--~ey~CEICGn~~Y~GrkaFe 274 (381)
.+.|+|+ |+....-.. ..-+|+.|| |+|.||
T Consensus 78 ~~gG~PL--w~s~~~~~~~~~ip~C~~Cg-----~~R~FE 110 (164)
T PF04194_consen 78 CRGGKPL--WISSTPIPPESDIPKCENCG-----SPRVFE 110 (164)
T ss_pred CCCCeEE--EecCCCCCccccCCCCccCC-----CccEEE
Confidence 4567744 665433222 256899999 788887
No 43
>PF04502 DUF572: Family of unknown function (DUF572) ; InterPro: IPR007590 This entry represents eukaryotic proteins with undetermined function belonging to the CWC16 family.
Probab=27.07 E-value=22 Score=35.93 Aligned_cols=34 Identities=21% Similarity=0.540 Sum_probs=24.2
Q ss_pred ecceeccCCcccChh--------hhhhhcchhhhhhcccccC
Q psy7416 257 YTCEICGNFVYKGPK--------AFQRHFAEWRHAHGMRCLG 290 (381)
Q Consensus 257 y~CEICGn~~Y~Grk--------aFe~HF~E~rH~~GmrcLG 290 (381)
-.|.-||+++|+|.| --|+.++=.-+.|-|+|=.
T Consensus 41 i~C~~C~~~I~kG~rFNA~Ke~v~~E~Yls~~I~rF~~kC~~ 82 (324)
T PF04502_consen 41 IWCNTCGEYIYKGVRFNARKEKVGNEKYLSTPIYRFYIKCPR 82 (324)
T ss_pred CcCCCCccccccceeeeeeeEecCCCccccceEEEEEEEcCC
Confidence 469999999999976 1244566666666777653
No 44
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=26.70 E-value=43 Score=35.50 Aligned_cols=35 Identities=43% Similarity=0.687 Sum_probs=30.0
Q ss_pred ChhhhhhhcchhhhhhcccccCCCCCccccccccHHHHHHHHHH
Q psy7416 269 GPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDALALWEK 312 (381)
Q Consensus 269 GrkaFe~HF~E~rH~~GmrcLGI~nt~~F~~IT~I~dA~~Lw~k 312 (381)
|.|+|-|-| |.-.||| |..|...|+.++|.+.-++
T Consensus 102 ~SK~faK~f--------m~k~~IP-ta~y~~f~~~e~a~ayi~~ 136 (428)
T COG0151 102 GSKAFAKDF--------MKKYGIP-TAEYEVFTDPEEAKAYIDE 136 (428)
T ss_pred hhHHHHHHH--------HHHcCCC-cccccccCCHHHHHHHHHH
Confidence 789999999 6677999 9999999999999984433
No 45
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=26.68 E-value=34 Score=25.40 Aligned_cols=31 Identities=35% Similarity=0.852 Sum_probs=19.6
Q ss_pred eecceeccCCcccChhhhhhhcchhhhhhcccccCCCCCcccccc
Q psy7416 256 SYTCEICGNFVYKGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANV 300 (381)
Q Consensus 256 ey~CEICGn~~Y~GrkaFe~HF~E~rH~~GmrcLGI~nt~~F~~I 300 (381)
.|.|.+|| ++|-. +.|-.--|||+-..|.++
T Consensus 1 ky~C~~Cg-yvYd~-------------~~Gd~~~~i~pGt~F~~L 31 (47)
T PF00301_consen 1 KYQCPVCG-YVYDP-------------EKGDPENGIPPGTPFEDL 31 (47)
T ss_dssp EEEETTTS-BEEET-------------TTBBGGGTB-TT--GGGS
T ss_pred CcCCCCCC-EEEcC-------------CcCCcccCcCCCCCHHHC
Confidence 38999999 88843 235555688876667665
No 46
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=26.32 E-value=30 Score=22.43 Aligned_cols=13 Identities=23% Similarity=0.749 Sum_probs=11.0
Q ss_pred CCCceecceeccC
Q psy7416 252 GLNISYTCEICGN 264 (381)
Q Consensus 252 GL~~ey~CEICGn 264 (381)
+.++.|+|.-||.
T Consensus 12 ~~~v~f~CPnCG~ 24 (24)
T PF07754_consen 12 EQAVPFPCPNCGF 24 (24)
T ss_pred ccCceEeCCCCCC
Confidence 4589999999994
No 47
>PF15056 NRN1: Neuritin protein family
Probab=25.56 E-value=62 Score=27.32 Aligned_cols=20 Identities=35% Similarity=0.790 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHhhhhhccC
Q psy7416 304 EDALALWEKLKAQKQEERWQ 323 (381)
Q Consensus 304 ~dA~~Lw~klk~~~~~~~~~ 323 (381)
++|-++|++|+.+.+.-+|.
T Consensus 55 eeAa~iWEsLrqESrk~~f~ 74 (89)
T PF15056_consen 55 EEAAAIWESLRQESRKMQFQ 74 (89)
T ss_pred HHHHHHHHHHHHHHHcCCCC
Confidence 78999999999998887774
No 48
>PF09082 DUF1922: Domain of unknown function (DUF1922); InterPro: IPR015166 Members of this family consist of a beta-sheet region followed by an alpha-helix and an unstructured C terminus. The beta-sheet region contains a CXCX...XCXC sequence with Cys residues located in two proximal loops and pointing towards each other. This precise function of this set of bacterial proteins is, as yet, unknown []. ; PDB: 1GH9_A.
Probab=24.63 E-value=33 Score=27.56 Aligned_cols=54 Identities=22% Similarity=0.391 Sum_probs=30.5
Q ss_pred eecceeccCCcccChhhhhhhcchhhhh-hcccccCCCCCccccccccHHHHHHHHHHHHHhh
Q psy7416 256 SYTCEICGNFVYKGPKAFQRHFAEWRHA-HGMRCLGIPNTAHFANVTQIEDALALWEKLKAQK 317 (381)
Q Consensus 256 ey~CEICGn~~Y~GrkaFe~HF~E~rH~-~GmrcLGI~nt~~F~~IT~I~dA~~Lw~klk~~~ 317 (381)
-|.| =||+++|--.-+ ..|. .-=+-|.|.-...|+-.-+.++|-++-.+|+.+.
T Consensus 3 ifrC-~Cgr~lya~e~~-------kTkkC~CG~~l~vk~~rIl~~~~~~~eA~eiVrklQ~e~ 57 (68)
T PF09082_consen 3 IFRC-DCGRYLYAKEGA-------KTKKCVCGKTLKVKERRILARAENAEEASEIVRKLQEEK 57 (68)
T ss_dssp EEEE-TTS--EEEETT--------SEEEETTTEEEE--SSS-BS--SSHHHHHHHHHHHSS--
T ss_pred EEEe-cCCCEEEecCCc-------ceeEecCCCeeeeeeEEEEEecCCHHHHHHHHHHHHHHh
Confidence 5889 599999932211 1111 1123356777889999999999999999999874
No 49
>COG1439 Predicted nucleic acid-binding protein, consists of a PIN domain and a Zn-ribbon module [General function prediction only]
Probab=24.55 E-value=15 Score=34.48 Aligned_cols=34 Identities=24% Similarity=0.548 Sum_probs=27.7
Q ss_pred CCCCCCCCCCchhHHHHhhCCCceec-----ceeccCCc
Q psy7416 233 NLPLGWDGKPIPYWLYKLHGLNISYT-----CEICGNFV 266 (381)
Q Consensus 233 ~lPlg~DGkPIPyWLYKLhGL~~ey~-----CEICGn~~ 266 (381)
+++++.-.+-+=-|.|.=||-.+.|+ |+|||..+
T Consensus 125 ~~~~~~~I~~v~~w~~rC~GC~~~f~~~~~~Cp~CG~~~ 163 (177)
T COG1439 125 SISYKGKIKKVRKWRLRCHGCKRIFPEPKDFCPICGSPL 163 (177)
T ss_pred eeeccCccceEeeeeEEEecCceecCCCCCcCCCCCCce
Confidence 34555556677789999999999999 99999874
No 50
>KOG2476|consensus
Probab=24.55 E-value=21 Score=38.33 Aligned_cols=50 Identities=24% Similarity=0.204 Sum_probs=35.0
Q ss_pred CCCCCCCCCCCchhH-HHHhhCCC-----ceecceeccCCcccChhhhhhhcchhh
Q psy7416 232 KNLPLGWDGKPIPYW-LYKLHGLN-----ISYTCEICGNFVYKGPKAFQRHFAEWR 281 (381)
Q Consensus 232 ~~lPlg~DGkPIPyW-LYKLhGL~-----~ey~CEICGn~~Y~GrkaFe~HF~E~r 281 (381)
.++-.|.++-|||-. |.--.++. -.+-||||-|-+|.||+-+=+-++.-.
T Consensus 55 ~~ykng~~~vPiptY~~g~~~~~~~ky~~n~~g~Ei~~Nlt~Lg~~G~~~l~sGl~ 110 (528)
T KOG2476|consen 55 EKYKNGTKKVPIPTYFLGDNANETEKYFENSDGKEIAENLTYLGRKGTYKLASGLT 110 (528)
T ss_pred HHHhcCCccCceeEEEecCCCCccceecccCCCcccccceeeecccceEeecCCcE
Confidence 355678889999944 33333322 347899999999999999877665433
No 51
>TIGR00009 L28 ribosomal protein L28. This model describes bacterial and chloroplast forms of the 50S ribosomal protein L28, a polypeptide about 60 amino acids in length. Mitochondrial homologs differ substantially in architecture and are not included.
Probab=23.13 E-value=36 Score=26.00 Aligned_cols=16 Identities=19% Similarity=0.436 Sum_probs=13.5
Q ss_pred ecceeccCCcccChhh
Q psy7416 257 YTCEICGNFVYKGPKA 272 (381)
Q Consensus 257 y~CEICGn~~Y~Grka 272 (381)
-.|+|||..+..|...
T Consensus 3 ~~C~i~GK~~~~Gn~v 18 (56)
T TIGR00009 3 RKCQLTGKGPLSGNNV 18 (56)
T ss_pred CEeeeCCCcCccCCee
Confidence 4699999999988764
No 52
>KOG0804|consensus
Probab=23.12 E-value=32 Score=36.70 Aligned_cols=31 Identities=39% Similarity=0.680 Sum_probs=25.4
Q ss_pred ecceeccCCc---ccChhhhhhhcchhhhhhcccc
Q psy7416 257 YTCEICGNFV---YKGPKAFQRHFAEWRHAHGMRC 288 (381)
Q Consensus 257 y~CEICGn~~---Y~GrkaFe~HF~E~rH~~Gmrc 288 (381)
.-|=||||.. |++..|. |||-|.-|-|-|..
T Consensus 241 wicliCg~vgcgrY~eghA~-rHweet~H~yalel 274 (493)
T KOG0804|consen 241 WICLICGNVGCGRYKEGHAR-RHWEETGHCYALEL 274 (493)
T ss_pred EEEEEccceecccccchhHH-HHHHhhcceEEEee
Confidence 4688999875 7777774 89999999998864
No 53
>PF07897 DUF1675: Protein of unknown function (DUF1675); InterPro: IPR012463 The members of this family are sequences derived from hypothetical plant proteins of unknown function. One member of this family (Q9SFV5 from SWISSPROT) is annotated as a putative RNA-binding protein, but no evidence was found to support this.
Probab=22.90 E-value=27 Score=35.12 Aligned_cols=51 Identities=29% Similarity=0.540 Sum_probs=39.0
Q ss_pred CCCCCCCchhHHHHh-hCCCceecceeccCCcccChhhhhhhcchhhhhhcccc
Q psy7416 236 LGWDGKPIPYWLYKL-HGLNISYTCEICGNFVYKGPKAFQRHFAEWRHAHGMRC 288 (381)
Q Consensus 236 lg~DGkPIPyWLYKL-hGL~~ey~CEICGn~~Y~GrkaFe~HF~E~rH~~Gmrc 288 (381)
+||.|+-|-=||||. -|=.|.-.| +|-. +++-+..|-+|=..---+|-||+
T Consensus 231 ~gpng~~i~g~ly~y~~~~~v~i~c-~chg-~~~~~~efv~h~~~~~~~~p~~h 282 (284)
T PF07897_consen 231 DGPNGKRIEGFLYKYGKGEEVRIVC-VCHG-SFLSPAEFVKHAGGGDVANPLRH 282 (284)
T ss_pred CCCCCceeeEEEEEecCCCeEEEEE-EecC-CCCCHHHHHHhcCCCCcCCchhc
Confidence 589999999999999 677777777 5544 35689999999776655555554
No 54
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=22.82 E-value=37 Score=25.07 Aligned_cols=29 Identities=24% Similarity=0.557 Sum_probs=21.0
Q ss_pred eecceeccCCcccChhhhhhhcchhhhhhccc
Q psy7416 256 SYTCEICGNFVYKGPKAFQRHFAEWRHAHGMR 287 (381)
Q Consensus 256 ey~CEICGn~~Y~GrkaFe~HF~E~rH~~Gmr 287 (381)
.|.|..||. . .-..++-+|+.+ .|...-+
T Consensus 2 ~f~CP~C~~-~-~~~~~L~~H~~~-~H~~~~~ 30 (54)
T PF05605_consen 2 SFTCPYCGK-G-FSESSLVEHCED-EHRSESK 30 (54)
T ss_pred CcCCCCCCC-c-cCHHHHHHHHHh-HCcCCCC
Confidence 699999999 4 467889888865 4555433
No 55
>KOG2989|consensus
Probab=22.68 E-value=39 Score=33.33 Aligned_cols=38 Identities=37% Similarity=0.703 Sum_probs=26.0
Q ss_pred CCCCCCCCCchhHH-HHhhCCC------ceecceeccCCcccChh
Q psy7416 234 LPLGWDGKPIPYWL-YKLHGLN------ISYTCEICGNFVYKGPK 271 (381)
Q Consensus 234 lPlg~DGkPIPyWL-YKLhGL~------~ey~CEICGn~~Y~Grk 271 (381)
+|-.+|.+-||+-= -|-.++- ..-.|=-||++.|+|++
T Consensus 11 yppdfDP~ki~r~k~~k~~q~~~Rlm~Pf~~rC~tCgeyi~kg~k 55 (253)
T KOG2989|consen 11 YPPDFDPKKIPRAKEPKNRQLKIRLMTPFRLRCNTCGEYIYKGKK 55 (253)
T ss_pred CCCCCChhhhhhhhccchhhcceeecccceeecccccchhhcCCC
Confidence 56777777787642 2223333 34579999999999986
No 56
>TIGR00270 conserved hypothetical protein TIGR00270.
Probab=22.61 E-value=33 Score=31.25 Aligned_cols=11 Identities=55% Similarity=1.247 Sum_probs=9.0
Q ss_pred ceeccCCcccCh
Q psy7416 259 CEICGNFVYKGP 270 (381)
Q Consensus 259 CEICGn~~Y~Gr 270 (381)
|||||..+. |+
T Consensus 3 CEiCG~~i~-~~ 13 (154)
T TIGR00270 3 CEICGRKIK-GK 13 (154)
T ss_pred cccCCCccC-CC
Confidence 999998775 65
No 57
>PF01348 Intron_maturas2: Type II intron maturase; InterPro: IPR002866 Group II introns use intron-encoded reverse transcriptase, maturase and DNA endonuclease activities for site-specific insertion into DNA []. Although this type of intron is self splicing in vitro they require a maturase protein for splicing in vivo. These introns are found in plant organelles []. Maturases in higher plants are encoded for in the nuclear genes [] but are otherwise encoded by organellar introns. The Maturase-related, N-terminal domain is found in plant potential maturases, which probably assists in the splicing of chloroplast group II introns []. The function of this region is, however, unknown It has been shown that a specific region of the aI2 intron is needed for the maturase function []. This C-terminal region was found to be conserved in group II introns and called domain X [].; GO: 0006397 mRNA processing, 0009507 chloroplast
Probab=22.25 E-value=32 Score=30.73 Aligned_cols=24 Identities=33% Similarity=0.807 Sum_probs=15.7
Q ss_pred CCCCchhHHHHhhCCCceecceeccC
Q psy7416 239 DGKPIPYWLYKLHGLNISYTCEICGN 264 (381)
Q Consensus 239 DGkPIPyWLYKLhGL~~ey~CEICGn 264 (381)
|+.|.++|--.- .-..-+|||||-
T Consensus 122 ~~~~~~~~~~~~--~~~~~~C~lCg~ 145 (146)
T PF01348_consen 122 DQFPRTYWYLRT--RLKARKCELCGS 145 (146)
T ss_pred cccccccccccc--ccCCCEEEEeee
Confidence 455555554444 567778999994
No 58
>PRK13701 psiB plasmid SOS inhibition protein B; Provisional
Probab=22.23 E-value=34 Score=31.06 Aligned_cols=24 Identities=33% Similarity=0.585 Sum_probs=19.9
Q ss_pred CCCCCCCCCCCCchhHHHHhhCCCceecceeccCCcc
Q psy7416 231 PKNLPLGWDGKPIPYWLYKLHGLNISYTCEICGNFVY 267 (381)
Q Consensus 231 p~~lPlg~DGkPIPyWLYKLhGL~~ey~CEICGn~~Y 267 (381)
-|..|=||+ .+-||.||.||-+.-
T Consensus 39 ~L~~P~gW~-------------~naEy~sEFgGffPV 62 (144)
T PRK13701 39 ELDAPDGWT-------------MNGEYGSEFGGFFPV 62 (144)
T ss_pred ccCCCccce-------------eehhhhccccCeeeE
Confidence 467899997 678999999998754
No 59
>PF07864 DUF1651: Protein of unknown function (DUF1651); InterPro: IPR012447 The proteins in this entry have not been characterised.
Probab=22.12 E-value=65 Score=25.54 Aligned_cols=28 Identities=29% Similarity=0.438 Sum_probs=22.1
Q ss_pred cCCCCCccccccccHHHHHHHHHHHHHh
Q psy7416 289 LGIPNTAHFANVTQIEDALALWEKLKAQ 316 (381)
Q Consensus 289 LGI~nt~~F~~IT~I~dA~~Lw~klk~~ 316 (381)
+|-|+...-.-.-.|++|.++|..|.+.
T Consensus 38 ~g~pp~lk~rr~l~~~~A~e~W~~L~~~ 65 (75)
T PF07864_consen 38 LGEPPLLKTRRRLTREEARELWKELQKT 65 (75)
T ss_pred CCCCCcceEEEEEEHHHHHHHHHHHHHc
Confidence 3666666666666999999999999875
No 60
>PRK08359 transcription factor; Validated
Probab=22.07 E-value=39 Score=31.67 Aligned_cols=13 Identities=54% Similarity=1.147 Sum_probs=10.5
Q ss_pred ecceeccCCcccCh
Q psy7416 257 YTCEICGNFVYKGP 270 (381)
Q Consensus 257 y~CEICGn~~Y~Gr 270 (381)
-.|||||..+. |+
T Consensus 7 ~~CEiCG~~i~-g~ 19 (176)
T PRK08359 7 RYCEICGAEIR-GP 19 (176)
T ss_pred ceeecCCCccC-CC
Confidence 34999999986 76
No 61
>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
Probab=22.01 E-value=34 Score=35.23 Aligned_cols=12 Identities=33% Similarity=0.985 Sum_probs=10.3
Q ss_pred CceecceeccCC
Q psy7416 254 NISYTCEICGNF 265 (381)
Q Consensus 254 ~~ey~CEICGn~ 265 (381)
+++|.||+||..
T Consensus 396 ~KPYrCevC~KR 407 (423)
T COG5189 396 DKPYRCEVCDKR 407 (423)
T ss_pred CCceeccccchh
Confidence 589999999964
No 62
>PF10102 DUF2341: Domain of unknown function (DUF2341); InterPro: IPR018765 This domain of unknown function is found in various bacterial proteins, including MotA/TolQ/ExbB proton channels and other transport proteins.
Probab=21.12 E-value=20 Score=29.67 Aligned_cols=14 Identities=43% Similarity=1.134 Sum_probs=11.4
Q ss_pred CCCCCCchhHHHHh
Q psy7416 237 GWDGKPIPYWLYKL 250 (381)
Q Consensus 237 g~DGkPIPyWLYKL 250 (381)
+-||.|||||+-+.
T Consensus 10 d~~~~~L~ywIE~w 23 (89)
T PF10102_consen 10 DSDGTPLPYWIESW 23 (89)
T ss_pred eCCCCEeEEEEEEC
Confidence 45799999998774
No 63
>PF04046 PSP: PSP; InterPro: IPR006568 PSP is a proline-rich domain of unknown function found in spliceosome associated proteins.
Probab=20.09 E-value=72 Score=24.01 Aligned_cols=20 Identities=35% Similarity=0.775 Sum_probs=15.1
Q ss_pred CCCCCCCchhHHHHhhCCCc
Q psy7416 236 LGWDGKPIPYWLYKLHGLNI 255 (381)
Q Consensus 236 lg~DGkPIPyWLYKLhGL~~ 255 (381)
||....-+|-|||+.+-+|-
T Consensus 13 Lg~~~~~~PPwl~~M~~~G~ 32 (48)
T PF04046_consen 13 LGMQENDPPPWLYRMRRLGY 32 (48)
T ss_pred cCCCCCCCChHHHHHHhcCC
Confidence 56666679999999886653
Done!