RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7416
(381 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 49.7 bits (118), Expect = 1e-06
Identities = 67/401 (16%), Positives = 115/401 (28%), Gaps = 143/401 (35%)
Query: 48 AQIYKLAEQVSEQRSATKDNVQRKQARGEGERGDSEESEAGDTSDEDDEKEA-----GSV 102
+ +A Q+ EQ + E + DDE G
Sbjct: 24 TASFFIASQLQEQFNKI-------------------LPEPTEGFAADDEPTTPAELVGKF 64
Query: 103 LTHVGAHLDLSAFSSWEELASLGLDRLKTLEERAQRLFSTKGKTALDP-SLLAKSKPDKG 161
L +V + ++ S ++++ +L L E + +G D +L AK +
Sbjct: 65 LGYVSSLVEPSKVGQFDQVLNLCLTEF----ENC---Y-LEGN---DIHALAAKLLQE-- 111
Query: 162 LKSKQQERQKEIAGLEAQIYKLAEQVSEQ------RSATKDNVQRKQAR------GEGER 209
+ KE+ + Y A ++++ SA V A+ G+G
Sbjct: 112 -NDTTLVKTKEL----IKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNT 166
Query: 210 GDS-EE----------------SEAGDT-----SDEDDEVPYNPKNLPL-GW----DGKP 242
D EE + +T D + L + W P
Sbjct: 167 DDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTP 226
Query: 243 IPYWL------YKLHGL----NISYTCEICGNFVYKGPKAFQRHFAEWRHAHGMRCLGIP 292
+L L G+ + T ++ G P + + G
Sbjct: 227 DKDYLLSIPISCPLIGVIQLAHYVVTAKLLG----FTPGELRSYLK-----------GA- 270
Query: 293 NTAHFAN-VTQIEDALALWEKLKAQKQEERWQPEQEEEFEDSLGNVVNRKTYEDLKRQGW 351
T H VT A+A+ A+ W E F S+ RK L G
Sbjct: 271 -TGHSQGLVT----AVAI-----AETDS--W-----ESFFVSV-----RKAITVLFFIGV 308
Query: 352 Q-----PEQE---EEFEDSLGNVVNRKTY----EDLKRQGL 380
+ P EDSL N + +L ++ +
Sbjct: 309 RCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQV 349
Score = 32.3 bits (73), Expect = 0.36
Identities = 31/172 (18%), Positives = 47/172 (27%), Gaps = 71/172 (41%)
Query: 199 QRKQARGEG--ERGDSEES----EAGDTSDED-------DEVPYNPKNLPL---GWDGKP 242
Q Q +G G S+ + D +D D V NP NL + G GK
Sbjct: 1624 QGSQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKR 1683
Query: 243 IPYWLYKLHGLNISYTCEICGN------------------FVYKGPKAF-------QR-- 275
I Y + E + + ++ K Q
Sbjct: 1684 I-RENY------SAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPAL 1736
Query: 276 ---HFAEWRHAHGMRCLG-IPNTAHFA--------------NVTQIEDALAL 309
A + ++ G IP A FA +V IE + +
Sbjct: 1737 TLMEKAAFED---LKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEV 1785
Score = 29.6 bits (66), Expect = 2.3
Identities = 27/141 (19%), Positives = 44/141 (31%), Gaps = 49/141 (34%)
Query: 267 YKGPKAFQRHFAEWRHA--HGMRCLGI---------PN--TAHFANVTQIEDALALWEKL 313
YK KA Q W A H G P T HF
Sbjct: 1636 YKTSKAAQ---DVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGE------------- 1679
Query: 314 KAQKQEERWQPEQEEEFEDSLGNVVNRKTYEDLKRQG----WQPEQEEEFEDSLGN---- 365
K ++ E + E D G + K ++++ ++ E+ L
Sbjct: 1680 KGKRIRENYSAMIFETIVD--GKLKTEKIFKEINEHSTSYTFRSEKGL-----LSATQFT 1732
Query: 366 -----VVNRKTYEDLKRQGLL 381
++ + +EDLK +GL+
Sbjct: 1733 QPALTLMEKAAFEDLKSKGLI 1753
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 49.1 bits (116), Expect = 2e-06
Identities = 60/445 (13%), Positives = 121/445 (27%), Gaps = 154/445 (34%)
Query: 3 EERAQRLFST---KGKTALDPSLLAKSKPDKG-LKSKQQERQKEIAGLEAQ-IYKLAEQV 57
RLF T K + + + + + L S + Q++ + + I +
Sbjct: 61 VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY 120
Query: 58 SEQRSATKDNVQRKQARGEGERGDSEESEA------GDTSDEDDEKEAG---SVLT---- 104
++ + K NV R Q + + E A G G + +
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV---------LGSGKTWVALDVC 171
Query: 105 ---HVGAHLDLSAFSSWEELASLG-LDRLKTLEERAQRLFSTKGKTALDPSLLAKSKPDK 160
V +D F W +L + +T+ E Q+L +DP+ ++S
Sbjct: 172 LSYKVQCKMDFKIF--W---LNLKNCNSPETVLEMLQKLLYQ-----IDPNWTSRSDHSS 221
Query: 161 GLKSKQQERQKEIAGL-EAQIYK-----LAEQVSEQRSATKDNVQRKQARGEGERGDSEE 214
+K + Q E+ L +++ Y+ L NVQ +++
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLVL------------LNVQ-----------NAKA 258
Query: 215 SEAGD--------TSDE---DDEVPYNPKNLPLGWDGKPIPYWLYKLHGLNISYTCEICG 263
A + T + D ++ L + L +
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD----------HHSMTLTPDEVKSLLL 308
Query: 264 NFVYKGPKAFQRHFAEWRHAHGMRCLGIPNTAHFAN-------VTQIEDALALWEKLKAQ 316
++ R +P N I D LA W
Sbjct: 309 KYL------------------DCRPQDLPREVLTTNPRRLSIIAESIRDGLATW------ 344
Query: 317 KQEERWQPEQEEEFEDSLGNVVN-------RKTYEDLK--RQG-----------WQPEQE 356
+ W+ ++ + + +N RK ++ L W +
Sbjct: 345 ---DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK 401
Query: 357 EEFEDSLGNVVNRKTYEDLKRQGLL 381
+ + L + L+
Sbjct: 402 SDVMVVV---------NKLHKYSLV 417
Score = 43.3 bits (101), Expect = 1e-04
Identities = 50/346 (14%), Positives = 98/346 (28%), Gaps = 94/346 (27%)
Query: 113 SAFSSWEELASLGLDRL---KTLEERAQRLFST---KGKTALDPSLLAKSKPDKG-LKSK 165
S S E +D + K RLF T K + + + + + L S
Sbjct: 44 SILSKEE------IDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSP 97
Query: 166 QQERQKEIAGLEAQ-IYKLAEQVSEQRSATKDNVQRKQ--------------ARG---EG 207
+ Q++ + + I + ++ + K NV R Q A+ +G
Sbjct: 98 IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG 157
Query: 208 ERGDSEESEAGDTSDEDDEVPYNPKN---LPLGWDGKP--IPYWLYKL-HGLNISYTCEI 261
G + A D L L P + L KL + ++ ++T
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217
Query: 262 CGNFVYKGP-----KAFQRHFAEWRHAHGMRCLGI------PNTA-HFAN-----VT--- 301
+ K +R + CL + F +T
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYE---NCLLVLLNVQNAKAWNAFNLSCKILLTTRF 274
Query: 302 -QIEDALALWEKLKAQKQEERWQPEQEEEFEDSLGNVVNRKTYEDLKRQ----------- 349
Q+ D L+ + +E + L ++ + +DL R+
Sbjct: 275 KQVTDFLSA-ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP-QDLPREVLTTNPRRLSI 332
Query: 350 -------------GWQPEQEEEFEDSLGNVVN-------RKTYEDL 375
W+ ++ + + +N RK ++ L
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL 378
Score = 36.0 bits (82), Expect = 0.020
Identities = 64/424 (15%), Positives = 125/424 (29%), Gaps = 105/424 (24%)
Query: 4 ERAQRLFSTKGKTALDPSLLAKSKPDKGLKSKQQERQKEIAGL-EAQIYKLA----EQVS 58
E Q+L +DP+ ++S +K + Q E+ L +++ Y+ V
Sbjct: 200 EMLQKLLYQ-----IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ 254
Query: 59 EQRSA------------TKD--------NVQRKQARGEGERGDSEESEAG-------DTS 91
++ T+ + E D
Sbjct: 255 NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR 314
Query: 92 DEDDEKEA--GS--VLTHVGAHLDLSAFSSWEELASLGLDRLKTLEERAQRLFSTKGKTA 147
+D +E + L+ + + ++W+ + D+L T+ E +
Sbjct: 315 PQDLPREVLTTNPRRLSIIAESIR-DGLATWDNWKHVNCDKLTTIIESSLN--------V 365
Query: 148 LDPSLLAK-----------SK-PDKGL-----KSKQQERQKEIAGLEAQIYKLAEQVSEQ 190
L+P+ K + P L + + + L Y L E+ ++
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK--YSLVEKQPKE 423
Query: 191 RSATKDNVQ---RKQARGEGE--RGDSEESEAGDTSDEDDEVPYNPKNLPLGWDGKPIPY 245
+ + ++ + + E R + T D DD +P D Y
Sbjct: 424 STISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDL-------IPPYLDQ----Y 472
Query: 246 WLYKL--HGLNISYTCEICGNFVYKGPKAFQR-HFAEWRHAHGMRCLGIPNTAHFANVTQ 302
+ + H NI + E F F F E + +R A
Sbjct: 473 FYSHIGHHLKNIEHP-ERMTLF----RMVFLDFRFLEQK----IRHDSTAWNA----SGS 519
Query: 303 IEDALALWEKLKAQKQEERWQPEQE----EEFEDSLGNVVNRKTYEDLKRQGWQPEQEEE 358
I + L + K + + E+ +F + + Y DL R E E
Sbjct: 520 ILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAI 579
Query: 359 FEDS 362
FE++
Sbjct: 580 FEEA 583
>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 402
Score = 46.8 bits (110), Expect = 6e-06
Identities = 18/99 (18%), Positives = 44/99 (44%), Gaps = 15/99 (15%)
Query: 7 QRLFSTKGKTALDPSLLAKSKPDKGLKSKQQERQKEIAGLEAQIYKLAEQVSEQRSATKD 66
R F T + + L+ K K + +++ E ++++ + ++++ S T+
Sbjct: 299 SRWFKTS--SVFESHLVGKIH------KKNESKRRNFVYSEYKLHRYLKYLNDEFSRTRS 350
Query: 67 NVQRKQARGEGER-------GDSEESEAGDTSDEDDEKE 98
V+RK A ER E+ A D+++++ ++
Sbjct: 351 FVERKLAFTANERMAEMDILTQKYEAPAYDSTEKEGAEQ 389
Score = 46.0 bits (108), Expect = 1e-05
Identities = 18/101 (17%), Positives = 43/101 (42%), Gaps = 15/101 (14%)
Query: 137 QRLFSTKGKTALDPSLLAKSKPDKGLKSKQQERQKEIAGLEAQIYKLAEQVSEQRSATKD 196
R F T + + L+ K K + +++ E ++++ + ++++ S T+
Sbjct: 299 SRWFKTS--SVFESHLVGKIH------KKNESKRRNFVYSEYKLHRYLKYLNDEFSRTRS 350
Query: 197 NVQRKQARGEGER-------GDSEESEAGDTSDEDDEVPYN 230
V+RK A ER E+ A D+++++ +
Sbjct: 351 FVERKLAFTANERMAEMDILTQKYEAPAYDSTEKEGAEQVD 391
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 37.5 bits (87), Expect = 0.008
Identities = 39/226 (17%), Positives = 81/226 (35%), Gaps = 19/226 (8%)
Query: 3 EERAQRLFSTKGKTALDPSLLAKSKPDKGLKSKQQERQKEIAGLEAQIYKLAEQVSEQRS 62
EE A R K D + ++ + + KE LE ++ L ++E+
Sbjct: 966 EEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEE 1025
Query: 63 ATKDNVQRKQARGEGERGDSEESEAGDTSDEDDEKEAGSVLTHVGAHLDLSAFSSWEELA 122
K+ + + + + E + E + + ++ E +
Sbjct: 1026 KAKN-LTKLKNKHESMISELEVRLKKEEKSRQELEKI---------------KRKLEGES 1069
Query: 123 SLGLDRLKTLEERAQRLFSTKGKTALDPSLLAKSKPDKGLKSKQQERQKEIAGLEAQIYK 182
S +++ L+ + L + K + D+ S++ K+I LE+ I
Sbjct: 1070 SDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDE--TSQKNNALKKIRELESHISD 1127
Query: 183 LAEQV-SEQRSATKDNVQRKQARGEGERGDSEESEAGDTSDEDDEV 227
L E + SE+ + K Q++ E E +E + DT+ E+
Sbjct: 1128 LQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQEL 1173
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 30.0 bits (67), Expect = 0.99
Identities = 7/30 (23%), Positives = 8/30 (26%), Gaps = 13/30 (43%)
Query: 257 YTCEICG-----NFVYKGPKAFQRHFAEWR 281
C +CG V EWR
Sbjct: 43 VVCALCGLVLSDKLVDTRS--------EWR 64
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.8 bits (61), Expect = 4.4
Identities = 8/63 (12%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 166 QQERQKEIAGLEAQIYKLAEQVSEQRSATKDNVQRKQA-RGEGERGDSEESEAGDTSDED 224
++E++K + L+A + ++ E+ + ++Q+ + E + ++ ++ D
Sbjct: 91 REEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPD 150
Query: 225 DEV 227
++
Sbjct: 151 ADI 153
Score = 27.0 bits (59), Expect = 9.0
Identities = 8/62 (12%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 36 QQERQKEIAGLEAQIYKLAEQVSEQRSATKDNVQRKQA-RGEGERGDSEESEAGDTSDED 94
++E++K + L+A + ++ E+ + ++Q+ + E + ++ ++ D
Sbjct: 91 REEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPD 150
Query: 95 DE 96
+
Sbjct: 151 AD 152
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator
protein R and maltose...; novel fold for DNA binding;
HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28
c.94.1.1
Length = 487
Score = 28.3 bits (63), Expect = 5.2
Identities = 10/63 (15%), Positives = 21/63 (33%)
Query: 10 FSTKGKTALDPSLLAKSKPDKGLKSKQQERQKEIAGLEAQIYKLAEQVSEQRSATKDNVQ 69
F +TA+ + + D+ L + Q E I L + + +D +
Sbjct: 339 FWYAVRTAVINAASGRQTVDEALAAAQTNAAAEFMSKINDINDLVNATFQVKKFFRDTKK 398
Query: 70 RKQ 72
+
Sbjct: 399 KFN 401
Score = 28.3 bits (63), Expect = 5.2
Identities = 10/63 (15%), Positives = 21/63 (33%)
Query: 140 FSTKGKTALDPSLLAKSKPDKGLKSKQQERQKEIAGLEAQIYKLAEQVSEQRSATKDNVQ 199
F +TA+ + + D+ L + Q E I L + + +D +
Sbjct: 339 FWYAVRTAVINAASGRQTVDEALAAAQTNAAAEFMSKINDINDLVNATFQVKKFFRDTKK 398
Query: 200 RKQ 202
+
Sbjct: 399 KFN 401
>1zch_A Hypothetical oxidoreductase YCND; nitroreductase, NADH-oxidase;
HET: FMN; 1.85A {Bacillus subtilis} SCOP: d.90.1.1
Length = 255
Score = 27.8 bits (62), Expect = 5.6
Identities = 9/66 (13%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Query: 296 HFANVTQIEDALALWEKLKAQKQEERWQPEQEEEFEDSLGNVVNRKTYED----LKRQGW 351
+ N ++ + +++ ++ +R ++ + S+ + R Y L++QG+
Sbjct: 186 TYLNQDELTSHIQAYDEQMSEYMNKRTNGKETRNWSQSIASYYERLYYPHIREMLEKQGF 245
Query: 352 QPEQEE 357
+ E+
Sbjct: 246 KVEKHH 251
>1f5v_A Oxygen-insensitive NADPH nitroreductase; flavoprotein,
oxidoreduction, nitrocompound, oxidoreductase; HET: FMN;
1.70A {Escherichia coli} SCOP: d.90.1.1
Length = 240
Score = 27.6 bits (62), Expect = 5.8
Identities = 9/65 (13%), Positives = 18/65 (27%), Gaps = 6/65 (9%)
Query: 319 EERWQPEQEEEFE--DSLGNVVNRKTYEDLKRQGWQPEQEEEFEDSLGNVVNRKTYEDLK 376
E +QP + D + +R W + ++ + L
Sbjct: 178 ENSYQPLDKGALAQYDEQLAEYYLTRGSNNRRDTWS----DHIRRTIIKESRPFILDYLH 233
Query: 377 RQGLL 381
+QG
Sbjct: 234 KQGWA 238
>1l8n_A Alpha-D-glucuronidase; hydrolase; HET: GCW XYP; 1.50A {Geobacillus
stearothermophilus} SCOP: c.1.8.10 d.92.2.2 PDB: 1k9d_A*
1mqq_A* 1mqp_A 1mqr_A* 1k9f_A* 1k9e_A*
Length = 679
Score = 27.9 bits (62), Expect = 7.4
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 295 AHFANVTQIEDALALWEKLKAQKQEERWQ 323
HF V Q + WE+LK + E+R+
Sbjct: 611 THFEGVEQAKQLRKRWEQLKGKIDEKRYH 639
>1gqi_A Alpha-glucuronidase; (alpha-beta)8 barrel, glycoside hydrolase;
1.48A {Pseudomonas cellulosa} SCOP: c.1.8.10 d.92.2.2
PDB: 1gqj_A* 1gqk_A* 1gql_A* 1h41_A*
Length = 708
Score = 27.9 bits (62), Expect = 7.6
Identities = 5/29 (17%), Positives = 12/29 (41%)
Query: 295 AHFANVTQIEDALALWEKLKAQKQEERWQ 323
++ V Q+ W++ +A R+
Sbjct: 611 KYYQGVEQVRAMQRTWDQQEAYVDAARFA 639
>4g9b_A Beta-PGM, beta-phosphoglucomutase; HAD, putative
phosphoglucomutase, enzyme function initiative
structural genomics, isomerase; 1.70A {Escherichia coli}
Length = 243
Score = 27.3 bits (61), Expect = 8.2
Identities = 12/61 (19%), Positives = 19/61 (31%), Gaps = 14/61 (22%)
Query: 282 HAHGMRCLGIPNTAHFANVT-------QIEDALALWEKLKAQK------QEERWQ-PEQE 327
+A GMR +GI A + A W+ + W P+ E
Sbjct: 183 NASGMRSVGIGAGLTGAQLLLPSTESLTWPRLSAFWQNVAENLYFQSHHHHHHWSHPQFE 242
Query: 328 E 328
+
Sbjct: 243 K 243
>4a95_A Glycylpeptide N-tetradecanoyltransferase; malaria; HET: 9MT NHM;
1.55A {Plasmodium vivax}
Length = 384
Score = 27.3 bits (60), Expect = 8.6
Identities = 13/82 (15%), Positives = 28/82 (34%), Gaps = 13/82 (15%)
Query: 206 EGERGDSEESEAGDTSDEDDEVPYNPKNLPLG--W-----DGKPIPYWLYKLHGLNISYT 258
+ + +E + ++ ++V + LP G W + +Y L L +Y
Sbjct: 13 INDEFNESVNEPFISDNKVEDVRKDEYKLPPGYSWYVCDVKDEKDRSEIYTL--LTDNYV 70
Query: 259 CEICGNFVYKGPKAFQRHFAEW 280
+ F + + F W
Sbjct: 71 EDDDNIFRFN----YSAEFLLW 88
>1rxt_A Myristoyl-, glycylpeptide N-tetradecanoyltransferase 1; alpha-beta
structure, unique N-myristoyltransferase fold; 3.00A
{Homo sapiens} SCOP: d.108.1.2 d.108.1.2
Length = 496
Score = 27.4 bits (60), Expect = 9.1
Identities = 26/183 (14%), Positives = 52/183 (28%), Gaps = 29/183 (15%)
Query: 59 EQRSATKDNVQRKQARGEGERGDSEESEAGDTSDEDDEKEAGSVLTHVGAHLDLSAFSSW 118
E +A K EG E + +++ G
Sbjct: 4 ESETAVKPPAPPLPQMMEGNGNGHEHCSDCENEEDNSYNRGGL----------------- 46
Query: 119 EELASLGLDRLKTLEERAQRLFSTKGKTALDPSLLAKSKPDKGLKSKQQERQKEIAGLEA 178
G + K +++ K K + S + L +++ + ++ L +
Sbjct: 47 SPANDTGAKKKKKKQKKK------KEKGSETDSAQDQPVKMNSLPAERIQEIQKAIELFS 100
Query: 179 QIYKLAEQVSEQRSATKDNVQRKQARGEGERGDSEESEAGDTSDEDDEVPYNPKNLPLG- 237
A+ + E + + GE ++ G + D + P LP G
Sbjct: 101 VGQGPAKTMEEASKRSYQFWDTQPVPKLGEVVNTH----GPVEPDKDNIRQEPYTLPQGF 156
Query: 238 -WD 239
WD
Sbjct: 157 TWD 159
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex,
thymine-adenine, CLOS conformation; HET: DNA 2DT D3T;
1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A*
3px6_A* 3thv_A* 3ti0_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A*
3hp6_A* 2hhw_A* 3ez5_A* 2hvh_A* 2hvi_A* 3eyz_A* 1nk4_A*
1l3t_A* 1l3u_A* 1l3v_A* 1l5u_A* ...
Length = 592
Score = 27.5 bits (62), Expect = 9.7
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 32 LKSKQQERQKEIAGLEAQIYKLAEQ 56
L+ +E +++ +E +IY+LA Q
Sbjct: 216 LEQMGKELAEQLGTVEQRIYELAGQ 240
Score = 27.5 bits (62), Expect = 9.7
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 162 LKSKQQERQKEIAGLEAQIYKLAEQ 186
L+ +E +++ +E +IY+LA Q
Sbjct: 216 LEQMGKELAEQLGTVEQRIYELAGQ 240
>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG,
protein structure initiative, PSI, joint center for S
genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1
c.30.1.1 d.142.1.2
Length = 412
Score = 27.1 bits (61), Expect = 9.9
Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 9/47 (19%)
Query: 269 GPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDALALWEKLKA 315
G K + + F + ++ GI TA F E+ +K
Sbjct: 105 GSKVYAKRFMK-KY-------GIR-TARFEVAETPEELREKIKKFSP 142
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.308 0.128 0.362
Gapped
Lambda K H
0.267 0.0735 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,658,818
Number of extensions: 337689
Number of successful extensions: 853
Number of sequences better than 10.0: 1
Number of HSP's gapped: 828
Number of HSP's successfully gapped: 70
Length of query: 381
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 286
Effective length of database: 4,049,298
Effective search space: 1158099228
Effective search space used: 1158099228
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 58 (26.1 bits)