RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7416
         (381 letters)



>d1gsoa3 d.142.1.2 (A:104-327) Glycinamide ribonucleotide synthetase
           (GAR-syn), domain 2 {Escherichia coli [TaxId: 562]}
          Length = 224

 Score = 29.5 bits (65), Expect = 0.56
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 9/44 (20%)

Query: 271 KAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDALALWEKLK 314
           KAF + F        +    IP TA + N T++E ALA   +  
Sbjct: 2   KAFTKDF--------LARHKIP-TAEYQNFTEVEPALAYLREKG 36


>d1ajza_ c.1.21.1 (A:) Dihydropteroate synthetase {Escherichia coli
           [TaxId: 562]}
          Length = 282

 Score = 28.6 bits (63), Expect = 1.3
 Identities = 5/25 (20%), Positives = 15/25 (60%)

Query: 299 NVTQIEDALALWEKLKAQKQEERWQ 323
           +V +  +A+ + E   + K+ +R++
Sbjct: 258 DVKETVEAMRVVEATLSAKENKRYE 282


>d1dxga_ g.41.5.2 (A:) Desulforedoxin {Desulfovibrio gigas [TaxId:
           879]}
          Length = 36

 Score = 25.1 bits (55), Expect = 1.9
 Identities = 6/10 (60%), Positives = 7/10 (70%)

Query: 257 YTCEICGNFV 266
           Y CE+CG  V
Sbjct: 7   YKCELCGQVV 16


>d1mkea1 b.55.1.4 (A:31-144) Actin regulatory protein WASP {Rat
           (Rattus norvegicus) [TaxId: 10116]}
          Length = 114

 Score = 26.3 bits (58), Expect = 2.7
 Identities = 16/79 (20%), Positives = 29/79 (36%), Gaps = 15/79 (18%)

Query: 245 YWL--YKLHGLNISYTCEICGNFVYKGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQ 302
           Y+L  + +    + +  E+  NFVY  P+ +   FA       +         +FAN   
Sbjct: 48  YFLRIFDIKDGKLLWEQELYNNFVYNSPRGYFHTFAGDTCQVAL---------NFANE-- 96

Query: 303 IEDALALWEKLKAQKQEER 321
            E+A    + +       R
Sbjct: 97  -EEAKKFRKAVT-DLLGRR 113


>d1h41a1 c.1.8.10 (A:152-712) alpha-D-glucuronidase catalytic domain
           {Pseudomonas cellulosa [TaxId: 155077]}
          Length = 561

 Score = 27.4 bits (61), Expect = 3.3
 Identities = 5/29 (17%), Positives = 12/29 (41%)

Query: 295 AHFANVTQIEDALALWEKLKAQKQEERWQ 323
            ++  V Q+      W++ +A     R+ 
Sbjct: 464 KYYQGVEQVRAMQRTWDQQEAYVDAARFA 492


>d1bf6a_ c.1.9.3 (A:) Phosphotriesterase homology protein
           {Escherichia coli [TaxId: 562]}
          Length = 291

 Score = 27.2 bits (59), Expect = 3.7
 Identities = 11/54 (20%), Positives = 22/54 (40%), Gaps = 3/54 (5%)

Query: 98  EAGSVLTHVGAHLDLSAFSSWEELASLGLDRLKTLEERAQRLFSTKGKTALDPS 151
             G  L H   H+DLS F +  +     LD+   + +    L +   +  ++ +
Sbjct: 4   PTGYTLAHEHLHIDLSGFKNNVDCR---LDQYAFICQEMNDLMTRGVRNVIEMT 54


>d1l8na1 c.1.8.10 (A:143-678) alpha-D-glucuronidase catalytic domain
           {Bacillus stearothermophilus [TaxId: 1422]}
          Length = 536

 Score = 27.0 bits (60), Expect = 4.1
 Identities = 10/29 (34%), Positives = 15/29 (51%)

Query: 295 AHFANVTQIEDALALWEKLKAQKQEERWQ 323
            HF  V Q +     WE+LK +  E+R+ 
Sbjct: 469 THFEGVEQAKQLRKRWEQLKGKIDEKRYH 497


>d1tmoa2 c.81.1.1 (A:5-631) Trimethylamine N-oxide reductase
           {Shewanella massilia [TaxId: 76854]}
          Length = 627

 Score = 26.6 bits (57), Expect = 6.2
 Identities = 11/81 (13%), Positives = 21/81 (25%), Gaps = 5/81 (6%)

Query: 300 VTQIEDALALWEKLKAQKQEERWQPEQEEEFEDSLGNVVNRKTYEDLKRQGWQPEQEEEF 359
            T+    L   ++      E  W      E + +         +    +QG+       F
Sbjct: 520 FTRFAAVLGKEKEYTRNMGEMEWLETLYNECKAANAGKFEMPDFATFWKQGY-----VHF 574

Query: 360 EDSLGNVVNRKTYEDLKRQGL 380
            D      +     D +   L
Sbjct: 575 GDGEVWTRHADFRNDPEINPL 595


>d1repc2 a.4.5.10 (C:144-246) RepE54 {Escherichia coli, mini-F
           plasmid [TaxId: 562]}
          Length = 103

 Score = 24.8 bits (54), Expect = 8.6
 Identities = 8/54 (14%), Positives = 20/54 (37%), Gaps = 2/54 (3%)

Query: 306 ALALWEKLKAQKQEER--WQPEQEEEFEDSLGNVVNRKTYEDLKRQGWQPEQEE 357
           A+ L+E L   ++ +       + +   +      + +   D +R+  Q    E
Sbjct: 19  AMRLYESLCQYRKPDGSGIVSLKIDWIIERYQLPQSYQRMPDFRRRFLQVCVNE 72


>d2edua1 a.60.2.7 (A:8-98) KIF22, C-terminal domain {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 91

 Score = 24.4 bits (53), Expect = 9.0
 Identities = 8/37 (21%), Positives = 17/37 (45%), Gaps = 4/37 (10%)

Query: 316 QKQEERWQ----PEQEEEFEDSLGNVVNRKTYEDLKR 348
           +K E+ W+    PE        + +++N  +  DL+ 
Sbjct: 1   EKAEDCWELQISPELLAHGRQKILDLLNEGSARDLRS 37


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.308    0.128    0.362 

Gapped
Lambda     K      H
   0.267   0.0620    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,350,326
Number of extensions: 62940
Number of successful extensions: 155
Number of sequences better than 10.0: 1
Number of HSP's gapped: 154
Number of HSP's successfully gapped: 18
Length of query: 381
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 294
Effective length of database: 1,213,086
Effective search space: 356647284
Effective search space used: 356647284
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 54 (24.8 bits)