BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy7417
         (372 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1YTZ|T Chain T, Crystal Structure Of Skeletal Muscle Troponin In The Ca2+-
           Activated State
 pdb|1YV0|T Chain T, Crystal Structure Of Skeletal Muscle Troponin In The Ca2+-
           Free State
          Length = 107

 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 35/50 (70%)

Query: 156 LNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYDV 205
           L  R KPLN++  +  KL+ KA ELW+ + +L+T+KYD  E+ KR+ Y++
Sbjct: 30  LAERRKPLNIDHLNEDKLRDKAKELWDWLYQLQTEKYDFAEQIKRKKYEI 79


>pdb|2W49|1 Chain 1, Isometrically Contracting Insect Asynchronous Flight
           Muscle
 pdb|2W49|4 Chain 4, Isometrically Contracting Insect Asynchronous Flight
           Muscle
 pdb|2W49|7 Chain 7, Isometrically Contracting Insect Asynchronous Flight
           Muscle
 pdb|2W49|Y Chain Y, Isometrically Contracting Insect Asynchronous Flight
           Muscle
 pdb|2W4U|1 Chain 1, Isometrically Contracting Insect Asynchronous Flight
           Muscle Quick Frozen After A Length Step
 pdb|2W4U|4 Chain 4, Isometrically Contracting Insect Asynchronous Flight
           Muscle Quick Frozen After A Length Step
 pdb|2W4U|7 Chain 7, Isometrically Contracting Insect Asynchronous Flight
           Muscle Quick Frozen After A Length Step
 pdb|2W4U|Y Chain Y, Isometrically Contracting Insect Asynchronous Flight
           Muscle Quick Frozen After A Length Step
          Length = 90

 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 34/47 (72%)

Query: 159 RIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYDV 205
           R KPLN++  +  KL+ KA ELW+ + +L+T+KYD  E+ KR+ Y++
Sbjct: 30  RRKPLNIDHLNEDKLRDKAKELWDWLYQLQTEKYDFAEQIKRKKYEI 76


>pdb|1J1D|B Chain B, Crystal Structure Of The 46kda Domain Of Human Cardiac
           Troponin In The Ca2+ Saturated Form
 pdb|1J1D|E Chain E, Crystal Structure Of The 46kda Domain Of Human Cardiac
           Troponin In The Ca2+ Saturated Form
 pdb|1J1E|B Chain B, Crystal Structure Of The 52kda Domain Of Human Cardiac
           Troponin In The Ca2+ Saturated Form
 pdb|1J1E|E Chain E, Crystal Structure Of The 52kda Domain Of Human Cardiac
           Troponin In The Ca2+ Saturated Form
          Length = 106

 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 44/68 (64%), Gaps = 4/68 (5%)

Query: 159 RIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEERQKRQDYDV----SKIIINKKI 214
           R K L ++  +  +L+ KA ELW+TI  LE +K+DL+E+ K+Q Y++    ++I  N+K+
Sbjct: 33  RRKVLAIDHLNEDQLREKAKELWQTIYNLEAEKFDLQEKFKQQKYEINVLRNRINDNQKV 92

Query: 215 MPSPGQGR 222
             + G+ +
Sbjct: 93  SKTRGKAK 100


>pdb|1J1D|C Chain C, Crystal Structure Of The 46kda Domain Of Human Cardiac
           Troponin In The Ca2+ Saturated Form
 pdb|1J1D|F Chain F, Crystal Structure Of The 46kda Domain Of Human Cardiac
           Troponin In The Ca2+ Saturated Form
          Length = 133

 Score = 31.2 bits (69), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 14/43 (32%), Positives = 26/43 (60%)

Query: 155 ALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLEER 197
           AL+ R +PL + G    +LQ  A +L   + K++ ++YD+E +
Sbjct: 45  ALSTRAQPLELAGLGFAELQDLARQLHARVDKVDEERYDIEAK 87


>pdb|1J1E|C Chain C, Crystal Structure Of The 52kda Domain Of Human Cardiac
           Troponin In The Ca2+ Saturated Form
 pdb|1J1E|F Chain F, Crystal Structure Of The 52kda Domain Of Human Cardiac
           Troponin In The Ca2+ Saturated Form
          Length = 180

 Score = 30.4 bits (67), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 14/41 (34%), Positives = 25/41 (60%)

Query: 155 ALNIRIKPLNVEGWSIHKLQAKATELWETIVKLETDKYDLE 195
           AL+ R +PL + G    +LQ  A +L   + K++ ++YD+E
Sbjct: 45  ALSTRAQPLELAGLGFAELQDLARQLHARVDKVDEERYDIE 85


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.313    0.130    0.369 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,472,334
Number of Sequences: 62578
Number of extensions: 285214
Number of successful extensions: 562
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 557
Number of HSP's gapped (non-prelim): 5
length of query: 372
length of database: 14,973,337
effective HSP length: 100
effective length of query: 272
effective length of database: 8,715,537
effective search space: 2370626064
effective search space used: 2370626064
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)